molstar 4.3.0 → 4.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1384) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +197 -197
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +129 -129
  5. package/build/viewer/molstar.css +1 -1
  6. package/build/viewer/molstar.js +1 -1
  7. package/build/viewer/molstar.js.LICENSE.txt +0 -9
  8. package/lib/apps/docking-viewer/index.html +36 -36
  9. package/lib/apps/docking-viewer/viewport.d.ts +1 -1
  10. package/lib/apps/docking-viewer/viewport.js +2 -1
  11. package/lib/apps/mesoscale-explorer/app.d.ts +3 -1
  12. package/lib/apps/mesoscale-explorer/app.js +12 -1
  13. package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
  14. package/lib/apps/mesoscale-explorer/behavior/camera.js +32 -6
  15. package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
  16. package/lib/apps/mesoscale-explorer/behavior/select.js +58 -9
  17. package/lib/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
  18. package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +8 -5
  19. package/lib/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
  20. package/lib/apps/mesoscale-explorer/data/generic/model.js +2 -1
  21. package/lib/apps/mesoscale-explorer/data/generic/preset.js +7 -6
  22. package/lib/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
  23. package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +6 -3
  24. package/lib/apps/mesoscale-explorer/data/petworld/model.js +3 -1
  25. package/lib/apps/mesoscale-explorer/data/petworld/preset.js +6 -3
  26. package/lib/apps/mesoscale-explorer/data/state.d.ts +48 -10
  27. package/lib/apps/mesoscale-explorer/data/state.js +83 -8
  28. package/lib/apps/mesoscale-explorer/index.html +106 -101
  29. package/lib/apps/mesoscale-explorer/style.scss +66 -33
  30. package/lib/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
  31. package/lib/apps/mesoscale-explorer/ui/entities.js +301 -32
  32. package/lib/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
  33. package/lib/apps/mesoscale-explorer/ui/panels.js +42 -5
  34. package/lib/apps/mesoscale-explorer/ui/states.d.ts +60 -2
  35. package/lib/apps/mesoscale-explorer/ui/states.js +471 -11
  36. package/lib/apps/viewer/app.d.ts +10 -4
  37. package/lib/apps/viewer/app.js +28 -0
  38. package/lib/apps/viewer/embedded.html +52 -52
  39. package/lib/apps/viewer/index.html +129 -129
  40. package/lib/cli/chem-comp-dict/create-ions.js +9 -9
  41. package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
  42. package/lib/cli/cifschema/util/generate.js +12 -12
  43. package/lib/cli/lipid-params/index.js +9 -9
  44. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +1 -1
  45. package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
  46. package/lib/commonjs/apps/mesoscale-explorer/app.d.ts +3 -1
  47. package/lib/commonjs/apps/mesoscale-explorer/app.js +12 -1
  48. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
  49. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.js +34 -8
  50. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
  51. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.js +58 -9
  52. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
  53. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +8 -6
  54. package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
  55. package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.js +2 -1
  56. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +9 -9
  57. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
  58. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +6 -4
  59. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/model.js +3 -1
  60. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +6 -4
  61. package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +48 -10
  62. package/lib/commonjs/apps/mesoscale-explorer/data/state.js +107 -28
  63. package/lib/commonjs/apps/mesoscale-explorer/data/util.js +2 -3
  64. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
  65. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +302 -30
  66. package/lib/commonjs/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
  67. package/lib/commonjs/apps/mesoscale-explorer/ui/panels.js +39 -2
  68. package/lib/commonjs/apps/mesoscale-explorer/ui/states.d.ts +60 -2
  69. package/lib/commonjs/apps/mesoscale-explorer/ui/states.js +477 -13
  70. package/lib/commonjs/apps/viewer/app.d.ts +10 -4
  71. package/lib/commonjs/apps/viewer/app.js +28 -0
  72. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
  73. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
  74. package/lib/commonjs/cli/chem-comp-dict/util.js +7 -7
  75. package/lib/commonjs/cli/cif2bcif/converter.js +1 -2
  76. package/lib/commonjs/cli/cifschema/util/cif-dic.js +2 -3
  77. package/lib/commonjs/cli/cifschema/util/generate.js +13 -14
  78. package/lib/commonjs/cli/cifschema/util/helper.js +1 -2
  79. package/lib/commonjs/cli/cifschema/util/schema.js +9 -10
  80. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  81. package/lib/commonjs/cli/state-docs/pd-to-md.js +1 -2
  82. package/lib/commonjs/cli/structure-info/helpers.js +2 -3
  83. package/lib/commonjs/cli/structure-info/model.js +11 -12
  84. package/lib/commonjs/examples/alpha-orbitals/controls.js +1 -2
  85. package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
  86. package/lib/commonjs/examples/basic-wrapper/custom-theme.js +2 -2
  87. package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
  88. package/lib/commonjs/examples/domain-annotation-server/mapping.js +1 -2
  89. package/lib/commonjs/examples/lighting/index.d.ts +1 -1
  90. package/lib/commonjs/examples/lighting/index.js +2 -1
  91. package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +5 -20
  92. package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +1 -2
  93. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +1 -2
  94. package/lib/commonjs/examples/task.js +6 -6
  95. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +1 -2
  96. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +4 -5
  97. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -3
  98. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -3
  99. package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
  100. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -3
  101. package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js +2 -2
  102. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +3 -3
  103. package/lib/commonjs/extensions/anvil/algorithm.js +5 -5
  104. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  105. package/lib/commonjs/extensions/anvil/behavior.js +2 -2
  106. package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
  107. package/lib/commonjs/extensions/anvil/representation.js +3 -3
  108. package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +1 -0
  109. package/lib/commonjs/extensions/assembly-symmetry/behavior.js +3 -3
  110. package/lib/commonjs/extensions/assembly-symmetry/color.d.ts +2 -2
  111. package/lib/commonjs/extensions/assembly-symmetry/color.js +3 -3
  112. package/lib/commonjs/extensions/assembly-symmetry/prop.js +27 -27
  113. package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
  114. package/lib/commonjs/extensions/assembly-symmetry/representation.js +2 -2
  115. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
  116. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +3 -3
  117. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  118. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +3 -3
  119. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +7 -7
  120. package/lib/commonjs/extensions/dnatco/ntc-tube/color.js +3 -3
  121. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
  122. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.js +3 -3
  123. package/lib/commonjs/extensions/g3d/data.js +2 -3
  124. package/lib/commonjs/extensions/g3d/format.d.ts +3 -3
  125. package/lib/commonjs/extensions/g3d/model.js +5 -5
  126. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +2 -2
  127. package/lib/commonjs/extensions/geo-export/ui.d.ts +0 -1
  128. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
  129. package/lib/commonjs/extensions/meshes/examples.js +9 -9
  130. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +3 -6
  131. package/lib/commonjs/extensions/meshes/mesh-extension.js +2 -2
  132. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +3 -3
  133. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +3 -3
  134. package/lib/commonjs/extensions/meshes/mesh-utils.js +9 -9
  135. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +1 -1
  136. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +11 -8
  137. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +3 -3
  138. package/lib/commonjs/extensions/model-export/export.js +2 -2
  139. package/lib/commonjs/extensions/model-export/ui.d.ts +0 -1
  140. package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -1
  141. package/lib/commonjs/extensions/mp4-export/encoder.js +1 -2
  142. package/lib/commonjs/extensions/mp4-export/ui.d.ts +0 -1
  143. package/lib/commonjs/extensions/mvs/camera.js +4 -5
  144. package/lib/commonjs/extensions/mvs/components/annotation-color-theme.js +2 -2
  145. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +32 -32
  146. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.js +2 -2
  147. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +16 -16
  148. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.js +2 -2
  149. package/lib/commonjs/extensions/mvs/components/annotation-prop.js +2 -2
  150. package/lib/commonjs/extensions/mvs/components/annotation-structure-component.js +4 -4
  151. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +32 -32
  152. package/lib/commonjs/extensions/mvs/components/custom-label/representation.js +2 -2
  153. package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +16 -16
  154. package/lib/commonjs/extensions/mvs/components/custom-label/visual.js +2 -2
  155. package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -6
  156. package/lib/commonjs/extensions/mvs/components/formats.js +2 -2
  157. package/lib/commonjs/extensions/mvs/components/is-mvs-model-prop.js +3 -3
  158. package/lib/commonjs/extensions/mvs/components/multilayer-color-theme.js +3 -3
  159. package/lib/commonjs/extensions/mvs/components/selector.js +3 -3
  160. package/lib/commonjs/extensions/mvs/helpers/indexing.d.ts +2 -2
  161. package/lib/commonjs/extensions/mvs/helpers/label-text.js +1 -2
  162. package/lib/commonjs/extensions/mvs/helpers/param-definition.js +2 -3
  163. package/lib/commonjs/extensions/mvs/helpers/schemas.d.ts +1 -1
  164. package/lib/commonjs/extensions/mvs/helpers/schemas.js +2 -2
  165. package/lib/commonjs/extensions/mvs/helpers/selections.js +6 -7
  166. package/lib/commonjs/extensions/mvs/helpers/utils.d.ts +1 -1
  167. package/lib/commonjs/extensions/mvs/helpers/utils.js +7 -7
  168. package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
  169. package/lib/commonjs/extensions/mvs/load-helpers.js +17 -17
  170. package/lib/commonjs/extensions/mvs/load.js +1 -2
  171. package/lib/commonjs/extensions/mvs/tree/generic/params-schema.js +8 -8
  172. package/lib/commonjs/extensions/mvs/tree/generic/tree-schema.js +8 -9
  173. package/lib/commonjs/extensions/mvs/tree/generic/tree-utils.js +10 -11
  174. package/lib/commonjs/extensions/mvs/tree/molstar/conversion.js +4 -4
  175. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +0 -8
  176. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.js +3 -3
  177. package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +2 -2
  178. package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +2 -2
  179. package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +3 -3
  180. package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +2 -2
  181. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  182. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +5 -5
  183. package/lib/commonjs/extensions/sb-ncbr/partial-charges/color.js +3 -3
  184. package/lib/commonjs/extensions/sb-ncbr/partial-charges/labels.js +1 -2
  185. package/lib/commonjs/extensions/sb-ncbr/partial-charges/property.js +2 -2
  186. package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.js +2 -3
  187. package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.js +2 -2
  188. package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.d.ts +6 -6
  189. package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.js +3 -3
  190. package/lib/commonjs/extensions/sb-ncbr/tunnels/props.js +2 -2
  191. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +3 -3
  192. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +3 -3
  193. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +3 -3
  194. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +2 -3
  195. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +3 -3
  196. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +6 -6
  197. package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +0 -1
  198. package/lib/commonjs/extensions/zenodo/ui.d.ts +0 -1
  199. package/lib/commonjs/mol-canvas3d/camera/transition.d.ts +1 -1
  200. package/lib/commonjs/mol-canvas3d/camera/transition.js +23 -6
  201. package/lib/commonjs/mol-canvas3d/camera/util.js +3 -4
  202. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +9 -1
  203. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.d.ts +1 -6
  204. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
  205. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  206. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
  207. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  208. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -0
  209. package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
  210. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -3
  211. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
  212. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +7 -2
  213. package/lib/commonjs/mol-canvas3d/util.js +3 -4
  214. package/lib/commonjs/mol-data/db/column-helpers.js +6 -7
  215. package/lib/commonjs/mol-data/db/column.d.ts +1 -1
  216. package/lib/commonjs/mol-data/generic/hash-set.js +1 -2
  217. package/lib/commonjs/mol-data/generic/linked-list.js +1 -2
  218. package/lib/commonjs/mol-data/int/impl/interval.js +15 -15
  219. package/lib/commonjs/mol-data/int/impl/ordered-set.js +25 -25
  220. package/lib/commonjs/mol-data/int/impl/segmentation.js +7 -7
  221. package/lib/commonjs/mol-data/int/impl/sorted-array.js +31 -31
  222. package/lib/commonjs/mol-data/int/linked-index.js +1 -2
  223. package/lib/commonjs/mol-data/util/array.js +5 -6
  224. package/lib/commonjs/mol-data/util/buckets.js +1 -2
  225. package/lib/commonjs/mol-data/util/combination.js +2 -2
  226. package/lib/commonjs/mol-data/util/equivalence-classes.js +2 -2
  227. package/lib/commonjs/mol-data/util/grouping.js +2 -3
  228. package/lib/commonjs/mol-data/util/hash-functions.js +9 -10
  229. package/lib/commonjs/mol-data/util/sort.js +5 -6
  230. package/lib/commonjs/mol-geo/geometry/base.d.ts +1 -1
  231. package/lib/commonjs/mol-geo/geometry/base.js +3 -3
  232. package/lib/commonjs/mol-geo/geometry/clipping-data.js +4 -5
  233. package/lib/commonjs/mol-geo/geometry/color-data.js +4 -5
  234. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -0
  235. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -0
  236. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -0
  237. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -0
  238. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +3 -4
  239. package/lib/commonjs/mol-geo/geometry/emissive-data.js +5 -6
  240. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +1 -1
  241. package/lib/commonjs/mol-geo/geometry/marker-data.js +3 -4
  242. package/lib/commonjs/mol-geo/geometry/mesh/builder/axes.js +1 -2
  243. package/lib/commonjs/mol-geo/geometry/mesh/builder/box.js +2 -3
  244. package/lib/commonjs/mol-geo/geometry/mesh/builder/cylinder.js +4 -5
  245. package/lib/commonjs/mol-geo/geometry/mesh/builder/ellipsoid.js +1 -2
  246. package/lib/commonjs/mol-geo/geometry/mesh/builder/ribbon.js +1 -2
  247. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +1 -2
  248. package/lib/commonjs/mol-geo/geometry/mesh/builder/sphere.js +2 -3
  249. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +1 -2
  250. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +7 -8
  251. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -0
  252. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -0
  253. package/lib/commonjs/mol-geo/geometry/overpaint-data.js +4 -5
  254. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  255. package/lib/commonjs/mol-geo/geometry/size-data.js +9 -9
  256. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  257. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -0
  258. package/lib/commonjs/mol-geo/geometry/substance-data.js +4 -5
  259. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +3 -3
  260. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +7 -7
  261. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -0
  262. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -0
  263. package/lib/commonjs/mol-geo/geometry/transform-data.js +4 -5
  264. package/lib/commonjs/mol-geo/geometry/transparency-data.js +5 -6
  265. package/lib/commonjs/mol-geo/primitive/box.js +3 -4
  266. package/lib/commonjs/mol-geo/primitive/cage.js +3 -4
  267. package/lib/commonjs/mol-geo/primitive/circle.js +2 -2
  268. package/lib/commonjs/mol-geo/primitive/cylinder.js +2 -2
  269. package/lib/commonjs/mol-geo/primitive/dodecahedron.js +3 -3
  270. package/lib/commonjs/mol-geo/primitive/icosahedron.js +2 -3
  271. package/lib/commonjs/mol-geo/primitive/octahedron.js +4 -4
  272. package/lib/commonjs/mol-geo/primitive/plane.js +2 -3
  273. package/lib/commonjs/mol-geo/primitive/polygon.js +1 -2
  274. package/lib/commonjs/mol-geo/primitive/polyhedron.js +2 -2
  275. package/lib/commonjs/mol-geo/primitive/primitive.js +4 -5
  276. package/lib/commonjs/mol-geo/primitive/prism.js +11 -11
  277. package/lib/commonjs/mol-geo/primitive/pyramid.js +6 -7
  278. package/lib/commonjs/mol-geo/primitive/sphere.js +2 -3
  279. package/lib/commonjs/mol-geo/primitive/spiked-ball.js +1 -2
  280. package/lib/commonjs/mol-geo/primitive/star.js +2 -2
  281. package/lib/commonjs/mol-geo/primitive/tetrahedron.js +3 -3
  282. package/lib/commonjs/mol-geo/primitive/torus.js +2 -2
  283. package/lib/commonjs/mol-geo/primitive/wedge.js +3 -4
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  1383. package/lib/servers/volume/config.js +5 -5
  1384. package/package.json +197 -196
@@ -1,67 +1,67 @@
1
- export const indexTemplate = `<!DOCTYPE html>
2
- <html lang="en">
3
- <head>
4
- <meta charset="UTF-8">
5
- <title>\${title}</title>
6
- <link rel="stylesheet" type="text/css" href="\${apiPrefix}/swagger-ui.css" >
7
- \${shortcutIconLink}
8
-
9
- <style>
10
- html
11
- {
12
- box-sizing: border-box;
13
- overflow: -moz-scrollbars-vertical;
14
- overflow-y: scroll;
15
- }
16
- *,
17
- *:before,
18
- *:after
19
- {
20
- box-sizing: inherit;
21
- }
22
- body
23
- {
24
- margin:0;
25
- background: #fafafa;
26
- }
27
- </style>
28
- </head>
29
-
30
- <body>
31
- <div id="swagger-ui"></div>
32
-
33
- <script src="\${apiPrefix}/swagger-ui-bundle.js"> </script>
34
- <script src="\${apiPrefix}/swagger-ui-standalone-preset.js"> </script>
35
- <script>
36
- function HidePlugin() {
37
- // this plugin overrides some components to return nothing
38
- return {
39
- components: {
40
- Topbar: function () { return null },
41
- Models: function () { return null },
42
- }
43
- }
44
- }
45
- window.onload = function () {
46
- var ui = SwaggerUIBundle({
47
- url: '\${openapiJsonUrl}',
48
- validatorUrl: null,
49
- docExpansion: 'list',
50
- dom_id: '#swagger-ui',
51
- deepLinking: true,
52
- presets: [
53
- SwaggerUIBundle.presets.apis,
54
- SwaggerUIStandalonePreset
55
- ],
56
- syntaxHighlight: { activated: false, theme: 'agate' },
57
- plugins: [
58
- SwaggerUIBundle.plugins.DownloadUrl,
59
- HidePlugin
60
- ],
61
- layout: 'StandaloneLayout'
62
- })
63
- window.ui = ui
64
- }
65
- </script>
66
- </body>
1
+ export const indexTemplate = `<!DOCTYPE html>
2
+ <html lang="en">
3
+ <head>
4
+ <meta charset="UTF-8">
5
+ <title>\${title}</title>
6
+ <link rel="stylesheet" type="text/css" href="\${apiPrefix}/swagger-ui.css" >
7
+ \${shortcutIconLink}
8
+
9
+ <style>
10
+ html
11
+ {
12
+ box-sizing: border-box;
13
+ overflow: -moz-scrollbars-vertical;
14
+ overflow-y: scroll;
15
+ }
16
+ *,
17
+ *:before,
18
+ *:after
19
+ {
20
+ box-sizing: inherit;
21
+ }
22
+ body
23
+ {
24
+ margin:0;
25
+ background: #fafafa;
26
+ }
27
+ </style>
28
+ </head>
29
+
30
+ <body>
31
+ <div id="swagger-ui"></div>
32
+
33
+ <script src="\${apiPrefix}/swagger-ui-bundle.js"> </script>
34
+ <script src="\${apiPrefix}/swagger-ui-standalone-preset.js"> </script>
35
+ <script>
36
+ function HidePlugin() {
37
+ // this plugin overrides some components to return nothing
38
+ return {
39
+ components: {
40
+ Topbar: function () { return null },
41
+ Models: function () { return null },
42
+ }
43
+ }
44
+ }
45
+ window.onload = function () {
46
+ var ui = SwaggerUIBundle({
47
+ url: '\${openapiJsonUrl}',
48
+ validatorUrl: null,
49
+ docExpansion: 'list',
50
+ dom_id: '#swagger-ui',
51
+ deepLinking: true,
52
+ presets: [
53
+ SwaggerUIBundle.presets.apis,
54
+ SwaggerUIStandalonePreset
55
+ ],
56
+ syntaxHighlight: { activated: false, theme: 'agate' },
57
+ plugins: [
58
+ SwaggerUIBundle.plugins.DownloadUrl,
59
+ HidePlugin
60
+ ],
61
+ layout: 'StandaloneLayout'
62
+ })
63
+ window.ui = ui
64
+ }
65
+ </script>
66
+ </body>
67
67
  </html>`;
@@ -39,7 +39,7 @@ declare const DefaultModelServerConfig: {
39
39
  /**
40
40
  * Provide a property config or a path a JSON file with the config.
41
41
  */
42
- customProperties: string | ModelPropertyProviderConfig;
42
+ customProperties: ModelPropertyProviderConfig | string;
43
43
  /**
44
44
  * Default source for fileMapping.
45
45
  */
@@ -53,7 +53,7 @@ declare const DefaultModelServerConfig: {
53
53
  *
54
54
  * /static query uses 'pdb-cif' and 'pdb-bcif' source names.
55
55
  */
56
- sourceMap: ([string, string] | [string, string, "cif" | "bcif" | "cif.gz" | "bcif.gz"])[];
56
+ sourceMap: ([string, string] | [string, string, ModelServerFetchFormats])[];
57
57
  };
58
58
  export declare const ModelServerFetchFormats: readonly ["cif", "bcif", "cif.gz", "bcif.gz"];
59
59
  export type ModelServerFetchFormats = (typeof ModelServerFetchFormats)[number];
@@ -94,7 +94,7 @@ export declare const ModelServerConfig: {
94
94
  /**
95
95
  * Provide a property config or a path a JSON file with the config.
96
96
  */
97
- customProperties: string | ModelPropertyProviderConfig;
97
+ customProperties: ModelPropertyProviderConfig | string;
98
98
  /**
99
99
  * Default source for fileMapping.
100
100
  */
@@ -108,7 +108,7 @@ export declare const ModelServerConfig: {
108
108
  *
109
109
  * /static query uses 'pdb-cif' and 'pdb-bcif' source names.
110
110
  */
111
- sourceMap: ([string, string] | [string, string, "cif" | "bcif" | "cif.gz" | "bcif.gz"])[];
111
+ sourceMap: ([string, string] | [string, string, ModelServerFetchFormats])[];
112
112
  };
113
113
  export declare const ModelServerConfigTemplate: ModelServerConfig;
114
114
  export declare function configureServer(): void;
@@ -2,7 +2,6 @@
2
2
  * Adapter from https://github.com/mafintosh/tar-stream
3
3
  * Copyright (c) 2014 Mathias Buus, MIT License (MIT)
4
4
  */
5
- /// <reference types="node" />
6
5
  export interface Headers {
7
6
  name: string;
8
7
  mode?: number;
@@ -5,7 +5,6 @@
5
5
  *
6
6
  * @author David Sehnal <david.sehnal@gmail.com>
7
7
  */
8
- /// <reference types="node" />
9
8
  import { SimpleBuffer } from '../../../mol-io/common/simple-buffer';
10
9
  export type Bool = {
11
10
  kind: 'bool';
@@ -5,7 +5,6 @@
5
5
  *
6
6
  * @author David Sehnal <david.sehnal@gmail.com>
7
7
  */
8
- /// <reference types="node" />
9
8
  import { FileHandle } from '../../../mol-io/common/file-handle';
10
9
  import { TypedArrayValueType } from '../../../mol-io/common/typed-array';
11
10
  export interface Spacegroup {
@@ -36,11 +36,7 @@ export declare const LimitsConfig: {
36
36
  maxOutputSizeInVoxelCountByPrecisionLevel: number[];
37
37
  };
38
38
  export declare function configureServer(): void;
39
- export declare function configureLocal(): {
40
- maxRequestBlockCount: number;
41
- maxFractionalBoxVolume: number;
42
- maxOutputSizeInVoxelCountByPrecisionLevel: number[];
43
- } & {
39
+ export declare function configureLocal(): LimitsConfig & {
44
40
  jobs: string;
45
41
  jobsTemplate: any;
46
42
  };
@@ -19,9 +19,9 @@ function addLimitsArgs(parser) {
19
19
  parser.add_argument('--maxRequestBlockCount', {
20
20
  default: DefaultLimitsConfig.maxRequestBlockCount,
21
21
  metavar: 'COUNT',
22
- help: `Maximum number of blocks that could be read in 1 query.
23
- This is somewhat tied to the maxOutputSizeInVoxelCountByPrecisionLevel
24
- in that the <maximum number of voxel> = maxRequestBlockCount * <block size>^3.
22
+ help: `Maximum number of blocks that could be read in 1 query.
23
+ This is somewhat tied to the maxOutputSizeInVoxelCountByPrecisionLevel
24
+ in that the <maximum number of voxel> = maxRequestBlockCount * <block size>^3.
25
25
  The default block size is 96 which corresponds to 28,311,552 voxels with 32 max blocks.`
26
26
  });
27
27
  parser.add_argument('--maxFractionalBoxVolume', {
@@ -33,8 +33,8 @@ The default block size is 96 which corresponds to 28,311,552 voxels with 32 max
33
33
  nargs: '+',
34
34
  default: DefaultLimitsConfig.maxOutputSizeInVoxelCountByPrecisionLevel,
35
35
  metavar: 'LEVEL',
36
- help: `What is the (approximate) maximum desired size in voxel count by precision level
37
- Rule of thumb: <response gzipped size> in [<voxel count> / 8, <voxel count> / 4].
36
+ help: `What is the (approximate) maximum desired size in voxel count by precision level
37
+ Rule of thumb: <response gzipped size> in [<voxel count> / 8, <voxel count> / 4].
38
38
  The maximum number of voxels is tied to maxRequestBlockCount.`
39
39
  });
40
40
  }
package/package.json CHANGED
@@ -1,196 +1,197 @@
1
- {
2
- "name": "molstar",
3
- "version": "4.3.0",
4
- "description": "A comprehensive macromolecular library.",
5
- "homepage": "https://github.com/molstar/molstar#readme",
6
- "repository": {
7
- "type": "git",
8
- "url": "https://github.com/molstar/molstar.git"
9
- },
10
- "bugs": {
11
- "url": "https://github.com/molstar/molstar/issues"
12
- },
13
- "scripts": {
14
- "lint": "eslint .",
15
- "lint-fix": "eslint . --fix",
16
- "test": "npm install --no-save \"gl@^6.0.2\" && npm run lint && jest",
17
- "jest": "jest",
18
- "build": "npm run build-tsc && npm run build-extra && npm run build-webpack",
19
- "clean": "node ./scripts/clean.js",
20
- "rebuild": "npm run clean && npm run build",
21
- "build-viewer": "npm run build-tsc && npm run build-extra && npm run build-webpack-viewer",
22
- "build-tsc": "concurrently \"tsc --incremental\" \"tsc --build tsconfig.commonjs.json --incremental\"",
23
- "build-extra": "cpx \"src/**/*.{scss,html,ico,jpg}\" lib/",
24
- "build-webpack": "webpack --mode production --config ./webpack.config.production.js",
25
- "build-webpack-viewer": "webpack --mode production --config ./webpack.config.viewer.js",
26
- "watch": "concurrently -c \"green,green,gray,gray\" --names \"tsc,srv,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-servers\" \"npm:watch-extra\" \"npm:watch-webpack\"",
27
- "watch-viewer": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer\"",
28
- "watch-viewer-debug": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer-debug\"",
29
- "watch-tsc": "tsc --watch --incremental",
30
- "watch-servers": "tsc --build tsconfig.commonjs.json --watch --incremental",
31
- "watch-extra": "cpx \"src/**/*.{scss,html,ico,jpg}\" lib/ --watch",
32
- "watch-webpack": "webpack -w --mode development --stats minimal",
33
- "watch-webpack-viewer": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.js",
34
- "watch-webpack-viewer-debug": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.debug.js",
35
- "serve": "http-server -p 1338 -g",
36
- "model-server": "node lib/commonjs/servers/model/server.js",
37
- "model-server-watch": "nodemon --watch lib lib/commonjs/servers/model/server.js",
38
- "volume-server-test": "node lib/commonjs/servers/volume/server.js --idMap em 'test/${id}.mdb' --defaultPort 1336",
39
- "plugin-state": "node lib/commonjs/servers/plugin-state/index.js --working-folder ./build/state --port 1339",
40
- "preversion": "npm run test",
41
- "version": "npm run rebuild && cpx .npmignore lib/",
42
- "postversion": "git push && git push --tags"
43
- },
44
- "files": [
45
- "lib/",
46
- "build/viewer/"
47
- ],
48
- "bin": {
49
- "cif2bcif": "lib/commonjs/cli/cif2bcif/index.js",
50
- "cifschema": "lib/commonjs/cli/cifschema/index.js",
51
- "mvs-validate": "lib/commonjs/cli/mvs/mvs-validate.js",
52
- "mvs-render": "lib/commonjs/cli/mvs/mvs-render.js",
53
- "mvs-print-schema": "lib/commonjs/cli/mvs/mvs-print-schema.js",
54
- "model-server": "lib/commonjs/servers/model/server.js",
55
- "model-server-query": "lib/commonjs/servers/model/query.js",
56
- "model-server-preprocess": "lib/commonjs/servers/model/preprocess.js",
57
- "volume-server": "lib/commonjs/servers/volume/server.js",
58
- "volume-server-query": "lib/commonjs/servers/volume/query.js",
59
- "volume-server-pack": "lib/commonjs/servers/volume/pack.js"
60
- },
61
- "nodemonConfig": {
62
- "ignoreRoot": [
63
- "./node_modules",
64
- ".git"
65
- ],
66
- "ignore": [],
67
- "delay": "2500"
68
- },
69
- "jest": {
70
- "moduleFileExtensions": [
71
- "ts",
72
- "js"
73
- ],
74
- "transform": {
75
- "\\.ts$": "ts-jest"
76
- },
77
- "moduleDirectories": [
78
- "node_modules",
79
- "lib"
80
- ],
81
- "testEnvironmentOptions": {
82
- "url": "http://localhost/"
83
- },
84
- "testRegex": "\\.spec\\.ts$"
85
- },
86
- "author": "Mol* Contributors",
87
- "contributors": [
88
- "Alexander Rose <alexander.rose@weirdbyte.de>",
89
- "David Sehnal <david.sehnal@gmail.com>",
90
- "Sebastian Bittrich <sebastian.bittrich@rcsb.org>",
91
- "Áron Samuel Kovács <aron.kovacs@mail.muni.cz>",
92
- "Ludovic Autin <autin@scripps.edu>",
93
- "Michal Malý <michal.maly@ibt.cas.cz>",
94
- "Jiří Černý <jiri.cerny@ibt.cas.cz>",
95
- "Panagiotis Tourlas <panagiot_tourlov@hotmail.com>",
96
- "Adam Midlik <midlik@gmail.com>",
97
- "Koya Sakuma <koya.sakuma.work@gmail.com>",
98
- "Gianluca Tomasello <giagitom@gmail.com>",
99
- "Ke Ma <mark.ma@rcsb.org>",
100
- "Jason Pattle <jpattle@exscientia.co.uk>",
101
- "David Williams <dwilliams@nobiastx.com>",
102
- "Zhenyu Zhang <jump2cn@gmail.com>",
103
- "Russell Parker <russell@benchling.com>",
104
- "Dominik Tichy <tichydominik451@gmail.com>",
105
- "Yana Rose <yana.v.rose@gmail.com>",
106
- "Yakov Pechersky <ffxen158@gmail.com>",
107
- "Christian Dominguez <christian.99dominguez@gmail.com>",
108
- "Cai Huiyu <szmun.caihy@gmail.com>",
109
- "Ryan DiRisio <rjdiris@gmail.com>",
110
- "Dušan Veľký <dvelky@mail.muni.cz>"
111
- ],
112
- "license": "MIT",
113
- "devDependencies": {
114
- "@types/cors": "^2.8.17",
115
- "@types/gl": "^6.0.5",
116
- "@types/pngjs": "^6.0.5",
117
- "@types/jest": "^29.5.12",
118
- "@types/react": "^18.3.1",
119
- "@types/react-dom": "^18.3.0",
120
- "@typescript-eslint/eslint-plugin": "^7.8.0",
121
- "@typescript-eslint/parser": "^7.8.0",
122
- "benchmark": "^2.1.4",
123
- "concurrently": "^8.2.2",
124
- "cpx2": "^7.0.1",
125
- "crypto-browserify": "^3.12.0",
126
- "css-loader": "^7.1.1",
127
- "eslint": "^8.57.0",
128
- "extra-watch-webpack-plugin": "^1.0.3",
129
- "file-loader": "^6.2.0",
130
- "fs-extra": "^11.2.0",
131
- "http-server": "^14.1.1",
132
- "jest": "^29.7.0",
133
- "jpeg-js": "^0.4.4",
134
- "mini-css-extract-plugin": "^2.9.0",
135
- "path-browserify": "^1.0.1",
136
- "raw-loader": "^4.0.2",
137
- "react": "^18.3.1",
138
- "react-dom": "^18.3.1",
139
- "sass": "^1.76.0",
140
- "sass-loader": "^14.2.1",
141
- "simple-git": "^3.24.0",
142
- "stream-browserify": "^3.0.0",
143
- "style-loader": "^4.0.0",
144
- "ts-jest": "^29.1.2",
145
- "typescript": "^5.4.5",
146
- "webpack": "^5.91.0",
147
- "webpack-cli": "^5.1.4"
148
- },
149
- "dependencies": {
150
- "@types/argparse": "^2.0.16",
151
- "@types/benchmark": "^2.1.5",
152
- "@types/compression": "1.7.5",
153
- "@types/express": "^4.17.21",
154
- "@types/node": "^18.19.31",
155
- "@types/node-fetch": "^2.6.11",
156
- "@types/swagger-ui-dist": "3.30.4",
157
- "argparse": "^2.0.1",
158
- "body-parser": "^1.20.2",
159
- "compression": "^1.7.4",
160
- "cors": "^2.8.5",
161
- "express": "^4.19.2",
162
- "h264-mp4-encoder": "^1.0.12",
163
- "immer": "^10.1.1",
164
- "immutable": "^4.3.5",
165
- "io-ts": "^2.2.21",
166
- "node-fetch": "^2.7.0",
167
- "react-markdown": "^9.0.1",
168
- "rxjs": "^7.8.1",
169
- "swagger-ui-dist": "^5.17.2",
170
- "tslib": "^2.6.2",
171
- "util.promisify": "^1.1.2",
172
- "xhr2": "^0.2.1"
173
- },
174
- "peerDependencies": {
175
- "canvas": "^2.11.2",
176
- "gl": "^6.0.2",
177
- "jpeg-js": "^0.4.4",
178
- "pngjs": "^6.0.0",
179
- "react": "^18.1.0 || ^17.0.2 || ^16.14.0",
180
- "react-dom": "^18.1.0 || ^17.0.2 || ^16.14.0"
181
- },
182
- "peerDependenciesMeta": {
183
- "canvas": {
184
- "optional": true
185
- },
186
- "gl": {
187
- "optional": true
188
- },
189
- "jpeg-js": {
190
- "optional": true
191
- },
192
- "pngjs": {
193
- "optional": true
194
- }
195
- }
196
- }
1
+ {
2
+ "name": "molstar",
3
+ "version": "4.4.1",
4
+ "description": "A comprehensive macromolecular library.",
5
+ "homepage": "https://github.com/molstar/molstar#readme",
6
+ "repository": {
7
+ "type": "git",
8
+ "url": "https://github.com/molstar/molstar.git"
9
+ },
10
+ "bugs": {
11
+ "url": "https://github.com/molstar/molstar/issues"
12
+ },
13
+ "scripts": {
14
+ "lint": "eslint .",
15
+ "lint-fix": "eslint . --fix",
16
+ "test": "npm install --no-save \"gl@^6.0.2\" && npm run lint && jest",
17
+ "jest": "jest",
18
+ "build": "npm run build-tsc && npm run build-extra && npm run build-webpack",
19
+ "clean": "node ./scripts/clean.js",
20
+ "rebuild": "npm run clean && npm run build",
21
+ "build-viewer": "npm run build-tsc && npm run build-extra && npm run build-webpack-viewer",
22
+ "build-tsc": "concurrently \"tsc --incremental\" \"tsc --build tsconfig.commonjs.json --incremental\"",
23
+ "build-extra": "cpx \"src/**/*.{scss,html,ico,jpg}\" lib/",
24
+ "build-webpack": "webpack --mode production --config ./webpack.config.production.js",
25
+ "build-webpack-viewer": "webpack --mode production --config ./webpack.config.viewer.js",
26
+ "watch": "concurrently -c \"green,green,gray,gray\" --names \"tsc,srv,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-servers\" \"npm:watch-extra\" \"npm:watch-webpack\"",
27
+ "watch-viewer": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer\"",
28
+ "watch-viewer-debug": "concurrently -c \"green,gray,gray\" --names \"tsc,ext,wpc\" --kill-others \"npm:watch-tsc\" \"npm:watch-extra\" \"npm:watch-webpack-viewer-debug\"",
29
+ "watch-tsc": "tsc --watch --incremental",
30
+ "watch-servers": "tsc --build tsconfig.commonjs.json --watch --incremental",
31
+ "watch-extra": "cpx \"src/**/*.{scss,html,ico,jpg}\" lib/ --watch",
32
+ "watch-webpack": "webpack -w --mode development --stats minimal",
33
+ "watch-webpack-viewer": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.js",
34
+ "watch-webpack-viewer-debug": "webpack -w --mode development --stats minimal --config ./webpack.config.viewer.debug.js",
35
+ "serve": "http-server -p 1338 -g",
36
+ "model-server": "node lib/commonjs/servers/model/server.js",
37
+ "model-server-watch": "nodemon --watch lib lib/commonjs/servers/model/server.js",
38
+ "volume-server-test": "node lib/commonjs/servers/volume/server.js --idMap em 'test/${id}.mdb' --defaultPort 1336",
39
+ "plugin-state": "node lib/commonjs/servers/plugin-state/index.js --working-folder ./build/state --port 1339",
40
+ "preversion": "npm run test",
41
+ "version": "npm run rebuild && cpx .npmignore lib/",
42
+ "postversion": "git push && git push --tags"
43
+ },
44
+ "files": [
45
+ "lib/",
46
+ "build/viewer/"
47
+ ],
48
+ "bin": {
49
+ "cif2bcif": "lib/commonjs/cli/cif2bcif/index.js",
50
+ "cifschema": "lib/commonjs/cli/cifschema/index.js",
51
+ "mvs-validate": "lib/commonjs/cli/mvs/mvs-validate.js",
52
+ "mvs-render": "lib/commonjs/cli/mvs/mvs-render.js",
53
+ "mvs-print-schema": "lib/commonjs/cli/mvs/mvs-print-schema.js",
54
+ "model-server": "lib/commonjs/servers/model/server.js",
55
+ "model-server-query": "lib/commonjs/servers/model/query.js",
56
+ "model-server-preprocess": "lib/commonjs/servers/model/preprocess.js",
57
+ "volume-server": "lib/commonjs/servers/volume/server.js",
58
+ "volume-server-query": "lib/commonjs/servers/volume/query.js",
59
+ "volume-server-pack": "lib/commonjs/servers/volume/pack.js"
60
+ },
61
+ "nodemonConfig": {
62
+ "ignoreRoot": [
63
+ "./node_modules",
64
+ ".git"
65
+ ],
66
+ "ignore": [],
67
+ "delay": "2500"
68
+ },
69
+ "jest": {
70
+ "moduleFileExtensions": [
71
+ "ts",
72
+ "js"
73
+ ],
74
+ "transform": {
75
+ "\\.ts$": "ts-jest"
76
+ },
77
+ "moduleDirectories": [
78
+ "node_modules",
79
+ "lib"
80
+ ],
81
+ "testEnvironmentOptions": {
82
+ "url": "http://localhost/"
83
+ },
84
+ "testRegex": "\\.spec\\.ts$"
85
+ },
86
+ "author": "Mol* Contributors",
87
+ "contributors": [
88
+ "Alexander Rose <alexander.rose@weirdbyte.de>",
89
+ "David Sehnal <david.sehnal@gmail.com>",
90
+ "Sebastian Bittrich <sebastian.bittrich@rcsb.org>",
91
+ "Áron Samuel Kovács <aron.kovacs@mail.muni.cz>",
92
+ "Ludovic Autin <autin@scripps.edu>",
93
+ "Michal Malý <michal.maly@ibt.cas.cz>",
94
+ "Jiří Černý <jiri.cerny@ibt.cas.cz>",
95
+ "Panagiotis Tourlas <panagiot_tourlov@hotmail.com>",
96
+ "Adam Midlik <midlik@gmail.com>",
97
+ "Koya Sakuma <koya.sakuma.work@gmail.com>",
98
+ "Gianluca Tomasello <giagitom@gmail.com>",
99
+ "Ke Ma <mark.ma@rcsb.org>",
100
+ "Jason Pattle <jpattle@exscientia.co.uk>",
101
+ "David Williams <dwilliams@nobiastx.com>",
102
+ "Zhenyu Zhang <jump2cn@gmail.com>",
103
+ "Russell Parker <russell@benchling.com>",
104
+ "Dominik Tichy <tichydominik451@gmail.com>",
105
+ "Yana Rose <yana.v.rose@gmail.com>",
106
+ "Yakov Pechersky <ffxen158@gmail.com>",
107
+ "Christian Dominguez <christian.99dominguez@gmail.com>",
108
+ "Cai Huiyu <szmun.caihy@gmail.com>",
109
+ "Ryan DiRisio <rjdiris@gmail.com>",
110
+ "Dušan Veľký <dvelky@mail.muni.cz>",
111
+ "Neli Fonseca <neli@ebi.ac.uk>"
112
+ ],
113
+ "license": "MIT",
114
+ "devDependencies": {
115
+ "@types/cors": "^2.8.17",
116
+ "@types/gl": "^6.0.5",
117
+ "@types/pngjs": "^6.0.5",
118
+ "@types/jest": "^29.5.12",
119
+ "@types/react": "^18.3.3",
120
+ "@types/react-dom": "^18.3.0",
121
+ "@typescript-eslint/eslint-plugin": "^7.14.1",
122
+ "@typescript-eslint/parser": "^7.14.1",
123
+ "benchmark": "^2.1.4",
124
+ "concurrently": "^8.2.2",
125
+ "cpx2": "^7.0.1",
126
+ "crypto-browserify": "^3.12.0",
127
+ "css-loader": "^7.1.2",
128
+ "eslint": "^8.57.0",
129
+ "extra-watch-webpack-plugin": "^1.0.3",
130
+ "file-loader": "^6.2.0",
131
+ "fs-extra": "^11.2.0",
132
+ "http-server": "^14.1.1",
133
+ "jest": "^29.7.0",
134
+ "jpeg-js": "^0.4.4",
135
+ "mini-css-extract-plugin": "^2.9.0",
136
+ "path-browserify": "^1.0.1",
137
+ "raw-loader": "^4.0.2",
138
+ "react": "^18.3.1",
139
+ "react-dom": "^18.3.1",
140
+ "sass": "^1.77.6",
141
+ "sass-loader": "^14.2.1",
142
+ "simple-git": "^3.25.0",
143
+ "stream-browserify": "^3.0.0",
144
+ "style-loader": "^4.0.0",
145
+ "ts-jest": "^29.1.5",
146
+ "typescript": "^5.5.2",
147
+ "webpack": "^5.92.1",
148
+ "webpack-cli": "^5.1.4"
149
+ },
150
+ "dependencies": {
151
+ "@types/argparse": "^2.0.16",
152
+ "@types/benchmark": "^2.1.5",
153
+ "@types/compression": "1.7.5",
154
+ "@types/express": "^4.17.21",
155
+ "@types/node": "^18.19.39",
156
+ "@types/node-fetch": "^2.6.11",
157
+ "@types/swagger-ui-dist": "3.30.5",
158
+ "argparse": "^2.0.1",
159
+ "body-parser": "^1.20.2",
160
+ "compression": "^1.7.4",
161
+ "cors": "^2.8.5",
162
+ "express": "^4.19.2",
163
+ "h264-mp4-encoder": "^1.0.12",
164
+ "immer": "^10.1.1",
165
+ "immutable": "^4.3.6",
166
+ "io-ts": "^2.2.21",
167
+ "node-fetch": "^2.7.0",
168
+ "react-markdown": "^9.0.1",
169
+ "rxjs": "^7.8.1",
170
+ "swagger-ui-dist": "^5.17.14",
171
+ "tslib": "^2.6.3",
172
+ "util.promisify": "^1.1.2",
173
+ "xhr2": "^0.2.1"
174
+ },
175
+ "peerDependencies": {
176
+ "canvas": "^2.11.2",
177
+ "gl": "^6.0.2",
178
+ "jpeg-js": "^0.4.4",
179
+ "pngjs": "^6.0.0",
180
+ "react": "^18.1.0 || ^17.0.2 || ^16.14.0",
181
+ "react-dom": "^18.1.0 || ^17.0.2 || ^16.14.0"
182
+ },
183
+ "peerDependenciesMeta": {
184
+ "canvas": {
185
+ "optional": true
186
+ },
187
+ "gl": {
188
+ "optional": true
189
+ },
190
+ "jpeg-js": {
191
+ "optional": true
192
+ },
193
+ "pngjs": {
194
+ "optional": true
195
+ }
196
+ }
197
+ }