molstar 4.2.0 → 4.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (339) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +197 -197
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +129 -129
  5. package/build/viewer/molstar.js +1 -1
  6. package/build/viewer/molstar.js.LICENSE.txt +9 -0
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/mesoscale-explorer/index.html +100 -100
  9. package/lib/apps/mesoscale-explorer/style.scss +33 -33
  10. package/lib/apps/viewer/app.d.ts +2 -1
  11. package/lib/apps/viewer/app.js +2 -1
  12. package/lib/apps/viewer/embedded.html +52 -52
  13. package/lib/apps/viewer/index.html +129 -129
  14. package/lib/cli/chem-comp-dict/create-ions.js +9 -9
  15. package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
  16. package/lib/cli/cifschema/util/generate.js +12 -12
  17. package/lib/cli/lipid-params/index.js +9 -9
  18. package/lib/commonjs/apps/viewer/app.d.ts +2 -1
  19. package/lib/commonjs/apps/viewer/app.js +1 -0
  20. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
  21. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
  22. package/lib/commonjs/cli/cifschema/util/generate.js +12 -12
  23. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  24. package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
  25. package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
  26. package/lib/commonjs/extensions/assembly-symmetry/prop.js +24 -24
  27. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +5 -5
  28. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +5 -5
  29. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
  30. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +1 -0
  31. package/lib/commonjs/extensions/mp4-export/encoder.js +1 -1
  32. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +0 -2
  33. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +2 -2
  34. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +8 -2
  35. package/lib/commonjs/extensions/sb-ncbr/index.d.ts +8 -0
  36. package/lib/commonjs/extensions/sb-ncbr/index.js +14 -1
  37. package/lib/commonjs/extensions/sb-ncbr/tunnels/actions.d.ts +20 -0
  38. package/lib/commonjs/extensions/sb-ncbr/tunnels/actions.js +89 -0
  39. package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.d.ts +26 -0
  40. package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.js +474 -0
  41. package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.d.ts +40 -0
  42. package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.js +96 -0
  43. package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.d.ts +146 -0
  44. package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.js +28 -0
  45. package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.d.ts +12 -0
  46. package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.js +54 -0
  47. package/lib/commonjs/extensions/sb-ncbr/tunnels/props.d.ts +19 -0
  48. package/lib/commonjs/extensions/sb-ncbr/tunnels/props.js +26 -0
  49. package/lib/commonjs/extensions/sb-ncbr/tunnels/representation.d.ts +29 -0
  50. package/lib/commonjs/extensions/sb-ncbr/tunnels/representation.js +99 -0
  51. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +17 -0
  52. package/lib/commonjs/mol-canvas3d/canvas3d.js +4 -0
  53. package/lib/commonjs/mol-canvas3d/passes/dof.d.ts +34 -0
  54. package/lib/commonjs/mol-canvas3d/passes/dof.js +167 -0
  55. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +2 -0
  56. package/lib/commonjs/mol-canvas3d/passes/draw.js +31 -8
  57. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +8 -0
  58. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +8 -0
  59. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +5 -0
  60. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  61. package/lib/commonjs/mol-gl/shader/background.frag.js +95 -95
  62. package/lib/commonjs/mol-gl/shader/background.vert.js +11 -11
  63. package/lib/commonjs/mol-gl/shader/blend-back-dpoit.frag.js +13 -13
  64. package/lib/commonjs/mol-gl/shader/bloom/blur.frag.js +28 -28
  65. package/lib/commonjs/mol-gl/shader/bloom/composite.frag.js +33 -33
  66. package/lib/commonjs/mol-gl/shader/bloom/luminosity.frag.js +52 -52
  67. package/lib/commonjs/mol-gl/shader/cas.frag.js +144 -144
  68. package/lib/commonjs/mol-gl/shader/chunks/apply-fog.glsl.js +31 -31
  69. package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +12 -12
  70. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +77 -77
  71. package/lib/commonjs/mol-gl/shader/chunks/apply-marker-color.glsl.js +16 -16
  72. package/lib/commonjs/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +8 -8
  73. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +140 -140
  74. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +6 -6
  75. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +8 -8
  76. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +112 -112
  77. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +14 -14
  78. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +18 -18
  79. package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +12 -12
  80. package/lib/commonjs/mol-gl/shader/chunks/check-transparency.glsl.js +16 -16
  81. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +7 -7
  82. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +5 -5
  83. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +60 -60
  84. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +122 -122
  85. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +104 -104
  86. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +150 -150
  87. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +61 -61
  88. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +234 -234
  89. package/lib/commonjs/mol-gl/shader/chunks/dpoit-write.glsl.js +62 -62
  90. package/lib/commonjs/mol-gl/shader/chunks/fade-lod.glsl.js +42 -42
  91. package/lib/commonjs/mol-gl/shader/chunks/float-to-rgba.glsl.js +39 -39
  92. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +127 -127
  93. package/lib/commonjs/mol-gl/shader/chunks/matrix-scale.glsl.js +5 -5
  94. package/lib/commonjs/mol-gl/shader/chunks/normal-frag-params.glsl.js +2 -2
  95. package/lib/commonjs/mol-gl/shader/chunks/read-from-texture.glsl.js +14 -14
  96. package/lib/commonjs/mol-gl/shader/chunks/rgba-to-float.glsl.js +84 -84
  97. package/lib/commonjs/mol-gl/shader/chunks/size-vert-params.glsl.js +11 -11
  98. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +23 -23
  99. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +17 -17
  100. package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +8 -8
  101. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +25 -25
  102. package/lib/commonjs/mol-gl/shader/compose.frag.js +12 -12
  103. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +23 -23
  104. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +43 -43
  105. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +15 -15
  106. package/lib/commonjs/mol-gl/shader/copy.frag.js +11 -11
  107. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +266 -266
  108. package/lib/commonjs/mol-gl/shader/cylinders.vert.js +89 -89
  109. package/lib/commonjs/mol-gl/shader/depth-merge.frag.js +23 -23
  110. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +362 -362
  111. package/lib/commonjs/mol-gl/shader/direct-volume.vert.js +41 -41
  112. package/lib/commonjs/mol-gl/shader/dof.frag.d.ts +7 -0
  113. package/lib/commonjs/mol-gl/shader/dof.frag.js +122 -0
  114. package/lib/commonjs/mol-gl/shader/evaluate-dpoit.frag.js +10 -10
  115. package/lib/commonjs/mol-gl/shader/evaluate-wboit.frag.js +17 -17
  116. package/lib/commonjs/mol-gl/shader/fxaa.frag.js +228 -228
  117. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +49 -49
  118. package/lib/commonjs/mol-gl/shader/gaussian-density.vert.js +27 -27
  119. package/lib/commonjs/mol-gl/shader/hi-z.frag.js +18 -18
  120. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +58 -58
  121. package/lib/commonjs/mol-gl/shader/histogram-pyramid/sum.frag.js +19 -19
  122. package/lib/commonjs/mol-gl/shader/image.frag.js +169 -169
  123. package/lib/commonjs/mol-gl/shader/image.vert.js +21 -21
  124. package/lib/commonjs/mol-gl/shader/lines.frag.js +42 -42
  125. package/lib/commonjs/mol-gl/shader/lines.vert.js +117 -117
  126. package/lib/commonjs/mol-gl/shader/marching-cubes/active-voxels.frag.js +70 -70
  127. package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.js +311 -311
  128. package/lib/commonjs/mol-gl/shader/marking/edge.frag.js +28 -28
  129. package/lib/commonjs/mol-gl/shader/marking/overlay.frag.js +26 -26
  130. package/lib/commonjs/mol-gl/shader/mesh.frag.js +65 -65
  131. package/lib/commonjs/mol-gl/shader/mesh.vert.js +49 -49
  132. package/lib/commonjs/mol-gl/shader/outlines.frag.js +95 -95
  133. package/lib/commonjs/mol-gl/shader/points.frag.js +59 -59
  134. package/lib/commonjs/mol-gl/shader/points.vert.js +38 -38
  135. package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +150 -150
  136. package/lib/commonjs/mol-gl/shader/quad.vert.js +10 -10
  137. package/lib/commonjs/mol-gl/shader/shadows.frag.js +123 -123
  138. package/lib/commonjs/mol-gl/shader/smaa/blend.frag.js +56 -56
  139. package/lib/commonjs/mol-gl/shader/smaa/blend.vert.js +25 -25
  140. package/lib/commonjs/mol-gl/shader/smaa/edges.frag.js +66 -66
  141. package/lib/commonjs/mol-gl/shader/smaa/edges.vert.js +26 -26
  142. package/lib/commonjs/mol-gl/shader/smaa/weights.frag.js +206 -206
  143. package/lib/commonjs/mol-gl/shader/smaa/weights.vert.js +32 -32
  144. package/lib/commonjs/mol-gl/shader/spheres.frag.js +148 -148
  145. package/lib/commonjs/mol-gl/shader/spheres.vert.js +132 -132
  146. package/lib/commonjs/mol-gl/shader/ssao-blur.frag.js +97 -97
  147. package/lib/commonjs/mol-gl/shader/ssao.frag.js +211 -211
  148. package/lib/commonjs/mol-gl/shader/text.frag.js +85 -85
  149. package/lib/commonjs/mol-gl/shader/text.vert.js +85 -85
  150. package/lib/commonjs/mol-gl/shader/util/grid3d-template.frag.js +46 -46
  151. package/lib/commonjs/mol-gl/shader-code.js +15 -15
  152. package/lib/commonjs/mol-gl/webgl/compat.js +12 -12
  153. package/lib/commonjs/mol-gl/webgl/context.js +1 -0
  154. package/lib/commonjs/mol-gl/webgl/timer.d.ts +1 -1
  155. package/lib/commonjs/mol-gl/webgl/timer.js +8 -1
  156. package/lib/commonjs/mol-math/linear-algebra/3d/minimize-rmsd.js +2 -1
  157. package/lib/commonjs/mol-plugin/animation-loop.d.ts +1 -0
  158. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +6 -6
  159. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +1 -1
  160. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +3 -3
  161. package/lib/commonjs/mol-plugin-state/animation/built-in/state-snapshots.js +7 -3
  162. package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +3 -0
  163. package/lib/commonjs/servers/common/swagger-ui/indexTemplate.js +66 -66
  164. package/lib/commonjs/servers/volume/config.js +5 -5
  165. package/lib/examples/alpha-orbitals/example-data.js +160 -160
  166. package/lib/examples/alpha-orbitals/index.html +72 -72
  167. package/lib/examples/basic-wrapper/index.html +137 -137
  168. package/lib/examples/lighting/index.html +88 -88
  169. package/lib/examples/proteopedia-wrapper/index.html +236 -236
  170. package/lib/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
  171. package/lib/extensions/assembly-symmetry/prop.js +24 -24
  172. package/lib/extensions/dnatco/confal-pyramids/behavior.js +5 -5
  173. package/lib/extensions/dnatco/ntc-tube/behavior.js +5 -5
  174. package/lib/extensions/geo-export/usdz-exporter.js +41 -41
  175. package/lib/extensions/meshes/mesh-extension.d.ts +1 -0
  176. package/lib/extensions/mp4-export/encoder.js +1 -1
  177. package/lib/extensions/mvs/components/annotation-label/representation.d.ts +0 -2
  178. package/lib/extensions/mvs/components/custom-label/representation.d.ts +2 -2
  179. package/lib/extensions/mvs/tree/mvs/mvs-builder.d.ts +8 -2
  180. package/lib/extensions/sb-ncbr/index.d.ts +8 -0
  181. package/lib/extensions/sb-ncbr/index.js +8 -0
  182. package/lib/extensions/sb-ncbr/tunnels/actions.d.ts +20 -0
  183. package/lib/extensions/sb-ncbr/tunnels/actions.js +86 -0
  184. package/lib/extensions/sb-ncbr/tunnels/algorithm.d.ts +26 -0
  185. package/lib/extensions/sb-ncbr/tunnels/algorithm.js +469 -0
  186. package/lib/extensions/sb-ncbr/tunnels/behavior.d.ts +40 -0
  187. package/lib/extensions/sb-ncbr/tunnels/behavior.js +92 -0
  188. package/lib/extensions/sb-ncbr/tunnels/data-model.d.ts +146 -0
  189. package/lib/extensions/sb-ncbr/tunnels/data-model.js +23 -0
  190. package/lib/extensions/sb-ncbr/tunnels/examples.d.ts +12 -0
  191. package/lib/extensions/sb-ncbr/tunnels/examples.js +49 -0
  192. package/lib/extensions/sb-ncbr/tunnels/props.d.ts +19 -0
  193. package/lib/extensions/sb-ncbr/tunnels/props.js +22 -0
  194. package/lib/extensions/sb-ncbr/tunnels/representation.d.ts +29 -0
  195. package/lib/extensions/sb-ncbr/tunnels/representation.js +96 -0
  196. package/lib/mol-canvas3d/canvas3d.d.ts +17 -0
  197. package/lib/mol-canvas3d/canvas3d.js +4 -0
  198. package/lib/mol-canvas3d/passes/dof.d.ts +34 -0
  199. package/lib/mol-canvas3d/passes/dof.js +163 -0
  200. package/lib/mol-canvas3d/passes/draw.d.ts +2 -0
  201. package/lib/mol-canvas3d/passes/draw.js +31 -8
  202. package/lib/mol-canvas3d/passes/image.d.ts +8 -0
  203. package/lib/mol-canvas3d/passes/postprocessing.d.ts +8 -0
  204. package/lib/mol-canvas3d/passes/postprocessing.js +5 -0
  205. package/lib/mol-geo/geometry/lines/lines.d.ts +0 -1
  206. package/lib/mol-gl/shader/background.frag.js +95 -95
  207. package/lib/mol-gl/shader/background.vert.js +11 -11
  208. package/lib/mol-gl/shader/blend-back-dpoit.frag.js +13 -13
  209. package/lib/mol-gl/shader/bloom/blur.frag.js +28 -28
  210. package/lib/mol-gl/shader/bloom/composite.frag.js +33 -33
  211. package/lib/mol-gl/shader/bloom/luminosity.frag.js +52 -52
  212. package/lib/mol-gl/shader/cas.frag.js +144 -144
  213. package/lib/mol-gl/shader/chunks/apply-fog.glsl.js +31 -31
  214. package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.js +12 -12
  215. package/lib/mol-gl/shader/chunks/apply-light-color.glsl.js +77 -77
  216. package/lib/mol-gl/shader/chunks/apply-marker-color.glsl.js +16 -16
  217. package/lib/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +8 -8
  218. package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +140 -140
  219. package/lib/mol-gl/shader/chunks/assign-group.glsl.js +6 -6
  220. package/lib/mol-gl/shader/chunks/assign-marker-varying.glsl.js +8 -8
  221. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +112 -112
  222. package/lib/mol-gl/shader/chunks/assign-position.glsl.js +14 -14
  223. package/lib/mol-gl/shader/chunks/assign-size.glsl.js +18 -18
  224. package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.js +12 -12
  225. package/lib/mol-gl/shader/chunks/check-transparency.glsl.js +16 -16
  226. package/lib/mol-gl/shader/chunks/clip-instance.glsl.js +7 -7
  227. package/lib/mol-gl/shader/chunks/clip-pixel.glsl.js +5 -5
  228. package/lib/mol-gl/shader/chunks/color-frag-params.glsl.js +60 -60
  229. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +122 -122
  230. package/lib/mol-gl/shader/chunks/common-clip.glsl.js +104 -104
  231. package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +150 -150
  232. package/lib/mol-gl/shader/chunks/common-vert-params.glsl.js +61 -61
  233. package/lib/mol-gl/shader/chunks/common.glsl.js +234 -234
  234. package/lib/mol-gl/shader/chunks/dpoit-write.glsl.js +62 -62
  235. package/lib/mol-gl/shader/chunks/fade-lod.glsl.js +42 -42
  236. package/lib/mol-gl/shader/chunks/float-to-rgba.glsl.js +39 -39
  237. package/lib/mol-gl/shader/chunks/light-frag-params.glsl.js +127 -127
  238. package/lib/mol-gl/shader/chunks/matrix-scale.glsl.js +5 -5
  239. package/lib/mol-gl/shader/chunks/normal-frag-params.glsl.js +2 -2
  240. package/lib/mol-gl/shader/chunks/read-from-texture.glsl.js +14 -14
  241. package/lib/mol-gl/shader/chunks/rgba-to-float.glsl.js +84 -84
  242. package/lib/mol-gl/shader/chunks/size-vert-params.glsl.js +11 -11
  243. package/lib/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +23 -23
  244. package/lib/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +17 -17
  245. package/lib/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +8 -8
  246. package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +25 -25
  247. package/lib/mol-gl/shader/compose.frag.js +12 -12
  248. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +23 -23
  249. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +43 -43
  250. package/lib/mol-gl/shader/compute/color-smoothing/normalize.frag.js +15 -15
  251. package/lib/mol-gl/shader/copy.frag.js +11 -11
  252. package/lib/mol-gl/shader/cylinders.frag.js +266 -266
  253. package/lib/mol-gl/shader/cylinders.vert.js +89 -89
  254. package/lib/mol-gl/shader/depth-merge.frag.js +23 -23
  255. package/lib/mol-gl/shader/direct-volume.frag.js +362 -362
  256. package/lib/mol-gl/shader/direct-volume.vert.js +41 -41
  257. package/lib/mol-gl/shader/dof.frag.d.ts +7 -0
  258. package/lib/mol-gl/shader/dof.frag.js +119 -0
  259. package/lib/mol-gl/shader/evaluate-dpoit.frag.js +10 -10
  260. package/lib/mol-gl/shader/evaluate-wboit.frag.js +17 -17
  261. package/lib/mol-gl/shader/fxaa.frag.js +228 -228
  262. package/lib/mol-gl/shader/gaussian-density.frag.js +49 -49
  263. package/lib/mol-gl/shader/gaussian-density.vert.js +27 -27
  264. package/lib/mol-gl/shader/hi-z.frag.js +18 -18
  265. package/lib/mol-gl/shader/histogram-pyramid/reduction.frag.js +58 -58
  266. package/lib/mol-gl/shader/histogram-pyramid/sum.frag.js +19 -19
  267. package/lib/mol-gl/shader/image.frag.js +169 -169
  268. package/lib/mol-gl/shader/image.vert.js +21 -21
  269. package/lib/mol-gl/shader/lines.frag.js +42 -42
  270. package/lib/mol-gl/shader/lines.vert.js +117 -117
  271. package/lib/mol-gl/shader/marching-cubes/active-voxels.frag.js +70 -70
  272. package/lib/mol-gl/shader/marching-cubes/isosurface.frag.js +311 -311
  273. package/lib/mol-gl/shader/marking/edge.frag.js +28 -28
  274. package/lib/mol-gl/shader/marking/overlay.frag.js +26 -26
  275. package/lib/mol-gl/shader/mesh.frag.js +65 -65
  276. package/lib/mol-gl/shader/mesh.vert.js +49 -49
  277. package/lib/mol-gl/shader/outlines.frag.js +95 -95
  278. package/lib/mol-gl/shader/points.frag.js +59 -59
  279. package/lib/mol-gl/shader/points.vert.js +38 -38
  280. package/lib/mol-gl/shader/postprocessing.frag.js +150 -150
  281. package/lib/mol-gl/shader/quad.vert.js +10 -10
  282. package/lib/mol-gl/shader/shadows.frag.js +123 -123
  283. package/lib/mol-gl/shader/smaa/blend.frag.js +56 -56
  284. package/lib/mol-gl/shader/smaa/blend.vert.js +25 -25
  285. package/lib/mol-gl/shader/smaa/edges.frag.js +66 -66
  286. package/lib/mol-gl/shader/smaa/edges.vert.js +26 -26
  287. package/lib/mol-gl/shader/smaa/weights.frag.js +206 -206
  288. package/lib/mol-gl/shader/smaa/weights.vert.js +32 -32
  289. package/lib/mol-gl/shader/spheres.frag.js +148 -148
  290. package/lib/mol-gl/shader/spheres.vert.js +132 -132
  291. package/lib/mol-gl/shader/ssao-blur.frag.js +97 -97
  292. package/lib/mol-gl/shader/ssao.frag.js +211 -211
  293. package/lib/mol-gl/shader/text.frag.js +85 -85
  294. package/lib/mol-gl/shader/text.vert.js +85 -85
  295. package/lib/mol-gl/shader/util/grid3d-template.frag.js +46 -46
  296. package/lib/mol-gl/shader-code.js +15 -15
  297. package/lib/mol-gl/webgl/compat.js +12 -12
  298. package/lib/mol-gl/webgl/context.js +1 -0
  299. package/lib/mol-gl/webgl/timer.d.ts +1 -1
  300. package/lib/mol-gl/webgl/timer.js +8 -1
  301. package/lib/mol-math/linear-algebra/3d/minimize-rmsd.js +2 -1
  302. package/lib/mol-plugin/animation-loop.d.ts +1 -0
  303. package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +6 -6
  304. package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +1 -1
  305. package/lib/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +3 -3
  306. package/lib/mol-plugin/version.js +2 -2
  307. package/lib/mol-plugin-state/animation/built-in/state-snapshots.js +7 -3
  308. package/lib/mol-plugin-ui/skin/base/base.scss +37 -37
  309. package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
  310. package/lib/mol-plugin-ui/skin/base/components/controls.scss +445 -445
  311. package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
  312. package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
  313. package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
  314. package/lib/mol-plugin-ui/skin/base/components/misc.scss +663 -663
  315. package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
  316. package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
  317. package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
  318. package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
  319. package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
  320. package/lib/mol-plugin-ui/skin/base/components/viewport.scss +194 -194
  321. package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
  322. package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
  323. package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
  324. package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
  325. package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
  326. package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
  327. package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
  328. package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
  329. package/lib/mol-plugin-ui/skin/base/variables.scss +88 -88
  330. package/lib/mol-plugin-ui/skin/blue.scss +1 -1
  331. package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
  332. package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
  333. package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
  334. package/lib/mol-plugin-ui/skin/dark.scss +1 -1
  335. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  336. package/lib/mol-plugin-ui/viewport/simple-settings.js +3 -0
  337. package/lib/servers/common/swagger-ui/indexTemplate.js +66 -66
  338. package/lib/servers/volume/config.js +5 -5
  339. package/package.json +196 -195
@@ -1,195 +1,195 @@
1
- .msp-viewport {
2
- position: absolute;
3
- left: 0;
4
- top: 0;
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- right: 0;
6
- bottom: 0;
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- background: $default-background;
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-
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- .msp-btn-link {
10
- background: rgba(0, 0, 0, 0.2);
11
- }
12
-
13
- }
14
-
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- .msp-viewport-expanded {
16
- position: fixed;
17
- z-index: 1000;
18
- }
19
-
20
- .msp-viewport-host3d {
21
- position: absolute;
22
- left: 0;
23
- top: 0;
24
- right: 0;
25
- bottom: 0;
26
- -webkit-user-select: none;
27
- user-select: none;
28
- -webkit-tap-highlight-color: rgba(0, 0, 0, 0);
29
- -webkit-touch-callout: none;
30
- touch-action: manipulation;
31
-
32
- > canvas {
33
- background-color: $default-background;
34
- background-image: linear-gradient(45deg, lightgrey 25%, transparent 25%, transparent 75%, lightgrey 75%, lightgrey),
35
- linear-gradient(45deg, lightgrey 25%, transparent 25%, transparent 75%, lightgrey 75%, lightgrey);
36
- background-size: 60px 60px;
37
- background-position: 0 0, 30px 30px;
38
- }
39
- }
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-
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- .msp-viewport-controls {
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- position: absolute;
43
- right: $control-spacing;
44
- top: $control-spacing;
45
- width: 32px;
46
- }
47
-
48
- .msp-viewport-controls-buttons {
49
- text-align: right;
50
- position: relative;
51
- // opacity: 0.5;
52
- // &:hover { opacity: 1.0; }
53
-
54
- > div {
55
- position: relative;
56
- margin-bottom: 4px;
57
- }
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-
59
- button {
60
- padding: 0;
61
- text-align: center;
62
- width: $row-height;
63
- position: relative;
64
- }
65
-
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- .msp-btn-link-toggle-off {
67
- color: $msp-btn-link-toggle-off-font-color;
68
- }
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-
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- .msp-btn-link:hover {
71
- color: $hover-font-color;
72
- }
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- }
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-
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- .msp-semi-transparent-background {
76
- background: $default-background;
77
- opacity: 0.5;
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- position: absolute;
79
- top: 0;
80
- left: 0;
81
- width: 100%;
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- height: 100%;
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- }
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-
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- .msp-hover-box-wrapper {
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- position: relative;
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-
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- .msp-hover-box-body {
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- visibility: hidden;
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- position: absolute;
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- right: $row-height + 4px;
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- top: 0;
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- width: 100px;
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- background-color: $default-background;
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- }
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-
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- .msp-hover-box-spacer {
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- visibility: hidden;
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- position: absolute;
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- right: $row-height;
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- top: 0;
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- width: 4px;
103
- height: $row-height;
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- }
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-
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- &:hover .msp-hover-box-body,
107
- &:hover .msp-hover-box-spacer {
108
- visibility: visible;
109
- }
110
- }
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-
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- .msp-viewport-controls-panel {
113
- width: 290px;
114
- top: 0;
115
- right: $row-height + 4px;
116
- position: absolute;
117
- background: $control-background;
118
-
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- .msp-control-group-wrapper:first-child {
120
- padding-top: 0;
121
- }
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-
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- .msp-viewport-controls-panel-controls {
124
- overflow-y: auto;
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- max-height: 400px;
126
- }
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- }
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-
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- /* highlight & toasts */
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-
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- .msp-highlight-toast-wrapper {
132
- position: absolute;
133
- right: $control-spacing;
134
- bottom: $control-spacing;
135
- max-width: 95%;
136
-
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- z-index: 10000;
138
- }
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-
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- .msp-highlight-info {
141
- color: $highlight-info-font-color;
142
- padding: $info-vertical-padding $control-spacing;
143
- background: $default-background; //$highlight-info-background;
144
- opacity: 90%;
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- max-width: 400px;
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-
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- @include non-selectable;
148
- }
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-
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- .msp-highlight-markdown-row {
151
- padding-left: $control-spacing;
152
- }
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-
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- .msp-highlight-simple-row {
155
- text-align: right;
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- }
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-
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- .msp-highlight-info-hr {
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- margin-inline: 0px;
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- margin-block: 3px;
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- border: none;
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- height: 1px;
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- background-color: $highlight-info-font-color;
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- }
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-
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- .msp-highlight-info-additional {
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- font-size: 85%;
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- display: inline-block;
169
- color: $highlight-info-additional-font-color;
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- }
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-
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- .msp-snapshot-description-wrapper {
173
- background: rgba(red($default-background), green($default-background), blue($default-background), 0.5);
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-
175
- position: absolute;
176
- left: 0;
177
- top: $control-spacing + $row-height;
178
- padding: (0.66 * $control-spacing) $control-spacing;
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-
180
- max-height: 7 * $row-height;
181
- overflow: hidden;
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- overflow-y: auto;
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-
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- max-width: 400px;
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-
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- a {
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- text-decoration: underline;
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- cursor: pointer;
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- color: $font-color;
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- }
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-
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- ul, ol {
193
- padding-left: $control-spacing + 4px;
194
- }
1
+ .msp-viewport {
2
+ position: absolute;
3
+ left: 0;
4
+ top: 0;
5
+ right: 0;
6
+ bottom: 0;
7
+ background: $default-background;
8
+
9
+ .msp-btn-link {
10
+ background: rgba(0, 0, 0, 0.2);
11
+ }
12
+
13
+ }
14
+
15
+ .msp-viewport-expanded {
16
+ position: fixed;
17
+ z-index: 1000;
18
+ }
19
+
20
+ .msp-viewport-host3d {
21
+ position: absolute;
22
+ left: 0;
23
+ top: 0;
24
+ right: 0;
25
+ bottom: 0;
26
+ -webkit-user-select: none;
27
+ user-select: none;
28
+ -webkit-tap-highlight-color: rgba(0, 0, 0, 0);
29
+ -webkit-touch-callout: none;
30
+ touch-action: manipulation;
31
+
32
+ > canvas {
33
+ background-color: $default-background;
34
+ background-image: linear-gradient(45deg, lightgrey 25%, transparent 25%, transparent 75%, lightgrey 75%, lightgrey),
35
+ linear-gradient(45deg, lightgrey 25%, transparent 25%, transparent 75%, lightgrey 75%, lightgrey);
36
+ background-size: 60px 60px;
37
+ background-position: 0 0, 30px 30px;
38
+ }
39
+ }
40
+
41
+ .msp-viewport-controls {
42
+ position: absolute;
43
+ right: $control-spacing;
44
+ top: $control-spacing;
45
+ width: 32px;
46
+ }
47
+
48
+ .msp-viewport-controls-buttons {
49
+ text-align: right;
50
+ position: relative;
51
+ // opacity: 0.5;
52
+ // &:hover { opacity: 1.0; }
53
+
54
+ > div {
55
+ position: relative;
56
+ margin-bottom: 4px;
57
+ }
58
+
59
+ button {
60
+ padding: 0;
61
+ text-align: center;
62
+ width: $row-height;
63
+ position: relative;
64
+ }
65
+
66
+ .msp-btn-link-toggle-off {
67
+ color: $msp-btn-link-toggle-off-font-color;
68
+ }
69
+
70
+ .msp-btn-link:hover {
71
+ color: $hover-font-color;
72
+ }
73
+ }
74
+
75
+ .msp-semi-transparent-background {
76
+ background: $default-background;
77
+ opacity: 0.5;
78
+ position: absolute;
79
+ top: 0;
80
+ left: 0;
81
+ width: 100%;
82
+ height: 100%;
83
+ }
84
+
85
+ .msp-hover-box-wrapper {
86
+ position: relative;
87
+
88
+ .msp-hover-box-body {
89
+ visibility: hidden;
90
+ position: absolute;
91
+ right: $row-height + 4px;
92
+ top: 0;
93
+ width: 100px;
94
+ background-color: $default-background;
95
+ }
96
+
97
+ .msp-hover-box-spacer {
98
+ visibility: hidden;
99
+ position: absolute;
100
+ right: $row-height;
101
+ top: 0;
102
+ width: 4px;
103
+ height: $row-height;
104
+ }
105
+
106
+ &:hover .msp-hover-box-body,
107
+ &:hover .msp-hover-box-spacer {
108
+ visibility: visible;
109
+ }
110
+ }
111
+
112
+ .msp-viewport-controls-panel {
113
+ width: 290px;
114
+ top: 0;
115
+ right: $row-height + 4px;
116
+ position: absolute;
117
+ background: $control-background;
118
+
119
+ .msp-control-group-wrapper:first-child {
120
+ padding-top: 0;
121
+ }
122
+
123
+ .msp-viewport-controls-panel-controls {
124
+ overflow-y: auto;
125
+ max-height: 400px;
126
+ }
127
+ }
128
+
129
+ /* highlight & toasts */
130
+
131
+ .msp-highlight-toast-wrapper {
132
+ position: absolute;
133
+ right: $control-spacing;
134
+ bottom: $control-spacing;
135
+ max-width: 95%;
136
+
137
+ z-index: 10000;
138
+ }
139
+
140
+ .msp-highlight-info {
141
+ color: $highlight-info-font-color;
142
+ padding: $info-vertical-padding $control-spacing;
143
+ background: $default-background; //$highlight-info-background;
144
+ opacity: 90%;
145
+ max-width: 400px;
146
+
147
+ @include non-selectable;
148
+ }
149
+
150
+ .msp-highlight-markdown-row {
151
+ padding-left: $control-spacing;
152
+ }
153
+
154
+ .msp-highlight-simple-row {
155
+ text-align: right;
156
+ }
157
+
158
+ .msp-highlight-info-hr {
159
+ margin-inline: 0px;
160
+ margin-block: 3px;
161
+ border: none;
162
+ height: 1px;
163
+ background-color: $highlight-info-font-color;
164
+ }
165
+
166
+ .msp-highlight-info-additional {
167
+ font-size: 85%;
168
+ display: inline-block;
169
+ color: $highlight-info-additional-font-color;
170
+ }
171
+
172
+ .msp-snapshot-description-wrapper {
173
+ background: rgba(red($default-background), green($default-background), blue($default-background), 0.5);
174
+
175
+ position: absolute;
176
+ left: 0;
177
+ top: $control-spacing + $row-height;
178
+ padding: (0.66 * $control-spacing) $control-spacing;
179
+
180
+ max-height: 7 * $row-height;
181
+ overflow: hidden;
182
+ overflow-y: auto;
183
+
184
+ max-width: 400px;
185
+
186
+ a {
187
+ text-decoration: underline;
188
+ cursor: pointer;
189
+ color: $font-color;
190
+ }
191
+
192
+ ul, ol {
193
+ padding-left: $control-spacing + 4px;
194
+ }
195
195
  }
@@ -1,72 +1,72 @@
1
-
2
-
3
- .msp-layout-expanded, .msp-layout-standard {
4
- left: 0;
5
- right: 0;
6
- top: 0;
7
- bottom: 0;
8
- }
9
-
10
- .msp-layout-standard {
11
- border: 1px solid $border-color;
12
- }
13
-
14
- .msp-layout-region {
15
- overflow: hidden;
16
- }
17
-
18
- .msp-layout-static, .msp-layout-scrollable {
19
- position: absolute;
20
- }
21
-
22
- .msp-scrollable {
23
- overflow-y: auto;
24
- }
25
-
26
- .msp-scrollable-container {
27
- position: absolute;
28
- left: 0;
29
- right: 0;
30
- top: 0;
31
- bottom: 0;
32
- overflow-y: auto;
33
- }
34
-
35
- .msp-layout-static {
36
- overflow: hidden;
37
- }
38
-
39
- .msp-layout-top, .msp-layout-main, .msp-layout-bottom {
40
- .msp-layout-static {
41
- left: 0;
42
- right: 0;
43
- top: 0;
44
- bottom: 0;
45
- }
46
- }
47
-
48
- .msp-layout-right {
49
- .msp-layout-static {
50
- left: 0;
51
- right: 0;
52
- top: 0;
53
- bottom: 0; // height: $row-height + $control-spacing;
54
- }
55
-
56
- .msp-layout-scrollable {
57
- left: 0;
58
- right: 0;
59
- top: $row-height + $control-spacing + 1;
60
- bottom: 0;
61
- }
62
-
63
- }
64
-
65
- .msp-layout-left {
66
- .msp-layout-static {
67
- left: 0;
68
- right: 0;
69
- bottom: 0;
70
- top: 0;
71
- }
1
+
2
+
3
+ .msp-layout-expanded, .msp-layout-standard {
4
+ left: 0;
5
+ right: 0;
6
+ top: 0;
7
+ bottom: 0;
8
+ }
9
+
10
+ .msp-layout-standard {
11
+ border: 1px solid $border-color;
12
+ }
13
+
14
+ .msp-layout-region {
15
+ overflow: hidden;
16
+ }
17
+
18
+ .msp-layout-static, .msp-layout-scrollable {
19
+ position: absolute;
20
+ }
21
+
22
+ .msp-scrollable {
23
+ overflow-y: auto;
24
+ }
25
+
26
+ .msp-scrollable-container {
27
+ position: absolute;
28
+ left: 0;
29
+ right: 0;
30
+ top: 0;
31
+ bottom: 0;
32
+ overflow-y: auto;
33
+ }
34
+
35
+ .msp-layout-static {
36
+ overflow: hidden;
37
+ }
38
+
39
+ .msp-layout-top, .msp-layout-main, .msp-layout-bottom {
40
+ .msp-layout-static {
41
+ left: 0;
42
+ right: 0;
43
+ top: 0;
44
+ bottom: 0;
45
+ }
46
+ }
47
+
48
+ .msp-layout-right {
49
+ .msp-layout-static {
50
+ left: 0;
51
+ right: 0;
52
+ top: 0;
53
+ bottom: 0; // height: $row-height + $control-spacing;
54
+ }
55
+
56
+ .msp-layout-scrollable {
57
+ left: 0;
58
+ right: 0;
59
+ top: $row-height + $control-spacing + 1;
60
+ bottom: 0;
61
+ }
62
+
63
+ }
64
+
65
+ .msp-layout-left {
66
+ .msp-layout-static {
67
+ left: 0;
68
+ right: 0;
69
+ bottom: 0;
70
+ top: 0;
71
+ }
72
72
  }