molstar 3.3.1 → 3.6.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1114) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -194
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/build/viewer/molstar.js.LICENSE.txt +12 -14
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/index.js +1 -1
  9. package/lib/apps/docking-viewer/viewport.js +1 -1
  10. package/lib/apps/viewer/app.d.ts +7 -6
  11. package/lib/apps/viewer/app.js +3 -1
  12. package/lib/apps/viewer/embedded.html +43 -43
  13. package/lib/apps/viewer/index.html +106 -106
  14. package/lib/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  15. package/lib/cli/chem-comp-dict/create-saccharides.js +67 -0
  16. package/lib/cli/chem-comp-dict/util.d.ts +20 -20
  17. package/lib/cli/cif2bcif/converter.js +1 -1
  18. package/lib/cli/cif2bcif/index.js +4 -4
  19. package/lib/cli/cifschema/util/cif-dic.d.ts +1 -1
  20. package/lib/cli/cifschema/util/cif-dic.js +7 -5
  21. package/lib/cli/cifschema/util/generate.d.ts +1 -1
  22. package/lib/cli/cifschema/util/generate.js +12 -3
  23. package/lib/cli/cifschema/util/schema.d.ts +3 -3
  24. package/lib/cli/cifschema/util/schema.js +1 -1
  25. package/lib/commonjs/apps/docking-viewer/index.js +14 -14
  26. package/lib/commonjs/apps/docking-viewer/viewport.js +33 -33
  27. package/lib/commonjs/apps/viewer/app.d.ts +7 -6
  28. package/lib/commonjs/apps/viewer/app.js +26 -24
  29. package/lib/commonjs/apps/viewer/index.js +1 -1
  30. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +6 -6
  31. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  32. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +69 -0
  33. package/lib/commonjs/cli/chem-comp-dict/create-table.js +8 -8
  34. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +20 -20
  35. package/lib/commonjs/cli/chem-comp-dict/util.js +17 -17
  36. package/lib/commonjs/cli/cif2bcif/converter.js +9 -9
  37. package/lib/commonjs/cli/cif2bcif/index.js +12 -12
  38. package/lib/commonjs/cli/cifschema/index.js +27 -27
  39. package/lib/commonjs/cli/cifschema/util/cif-dic.d.ts +1 -1
  40. package/lib/commonjs/cli/cifschema/util/cif-dic.js +8 -6
  41. package/lib/commonjs/cli/cifschema/util/generate.d.ts +1 -1
  42. package/lib/commonjs/cli/cifschema/util/generate.js +12 -3
  43. package/lib/commonjs/cli/cifschema/util/schema.d.ts +3 -3
  44. package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
  45. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  46. package/lib/commonjs/cli/state-docs/index.js +2 -2
  47. package/lib/commonjs/cli/structure-info/helpers.js +11 -11
  48. package/lib/commonjs/cli/structure-info/model.js +15 -15
  49. package/lib/commonjs/cli/structure-info/volume.js +9 -9
  50. package/lib/commonjs/examples/alpha-orbitals/controls.js +3 -3
  51. package/lib/commonjs/examples/alpha-orbitals/index.js +12 -12
  52. package/lib/commonjs/examples/basic-wrapper/controls.js +2 -2
  53. package/lib/commonjs/examples/basic-wrapper/index.js +23 -23
  54. package/lib/commonjs/examples/basic-wrapper/superposition.js +8 -8
  55. package/lib/commonjs/examples/domain-annotation-server/mapping.js +3 -3
  56. package/lib/commonjs/examples/domain-annotation-server/server.js +6 -6
  57. package/lib/commonjs/examples/domain-annotation-server/test.js +3 -3
  58. package/lib/commonjs/examples/lighting/index.js +7 -7
  59. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +2 -2
  60. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +4 -4
  61. package/lib/commonjs/examples/proteopedia-wrapper/index.js +27 -27
  62. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +2 -2
  63. package/lib/commonjs/examples/task.js +15 -15
  64. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +2 -2
  65. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +1 -1
  66. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -2
  67. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -2
  68. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -2
  69. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +13 -13
  70. package/lib/commonjs/extensions/anvil/algorithm.js +13 -13
  71. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  72. package/lib/commonjs/extensions/anvil/behavior.js +14 -14
  73. package/lib/commonjs/extensions/anvil/prop.js +7 -7
  74. package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
  75. package/lib/commonjs/extensions/anvil/representation.js +5 -5
  76. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  77. package/lib/commonjs/extensions/cellpack/model.js +26 -24
  78. package/lib/commonjs/extensions/cellpack/preset.js +6 -6
  79. package/lib/commonjs/extensions/cellpack/property.js +3 -3
  80. package/lib/commonjs/extensions/cellpack/representation.d.ts +1 -0
  81. package/lib/commonjs/extensions/cellpack/representation.js +2 -2
  82. package/lib/commonjs/extensions/cellpack/state.js +13 -13
  83. package/lib/commonjs/extensions/cellpack/util.js +14 -14
  84. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
  85. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.d.ts +397 -2
  86. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +223 -131
  87. package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js +6 -8
  88. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  89. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +2 -2
  90. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +19 -20
  91. package/lib/commonjs/extensions/g3d/data.js +6 -6
  92. package/lib/commonjs/extensions/g3d/format.js +14 -14
  93. package/lib/commonjs/extensions/g3d/model.js +4 -4
  94. package/lib/commonjs/extensions/geo-export/controls.js +3 -3
  95. package/lib/commonjs/extensions/geo-export/glb-exporter.js +9 -9
  96. package/lib/commonjs/extensions/geo-export/index.js +1 -1
  97. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +12 -12
  98. package/lib/commonjs/extensions/geo-export/obj-exporter.js +7 -7
  99. package/lib/commonjs/extensions/geo-export/stl-exporter.js +7 -7
  100. package/lib/commonjs/extensions/geo-export/ui.js +7 -7
  101. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +9 -9
  102. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +9 -9
  103. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +4 -4
  104. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +4 -4
  105. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +5 -5
  106. package/lib/commonjs/extensions/model-export/export.js +4 -4
  107. package/lib/commonjs/extensions/model-export/index.js +1 -1
  108. package/lib/commonjs/extensions/model-export/ui.js +5 -5
  109. package/lib/commonjs/extensions/mp4-export/controls.js +5 -5
  110. package/lib/commonjs/extensions/mp4-export/encoder.js +4 -4
  111. package/lib/commonjs/extensions/mp4-export/index.js +1 -1
  112. package/lib/commonjs/extensions/mp4-export/ui.js +5 -5
  113. package/lib/commonjs/extensions/pdbe/preferred-assembly.js +2 -2
  114. package/lib/commonjs/extensions/pdbe/struct-ref-domain.js +2 -2
  115. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
  116. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +8 -8
  117. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -0
  118. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +17 -17
  119. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +2 -2
  120. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +9 -9
  121. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -0
  122. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +6 -6
  123. package/lib/commonjs/extensions/rcsb/assembly-symmetry/ui.js +9 -9
  124. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +17 -17
  125. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +15 -15
  126. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  127. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +3 -3
  128. package/lib/commonjs/extensions/zenodo/index.d.ts +7 -0
  129. package/lib/commonjs/extensions/zenodo/index.js +35 -0
  130. package/lib/commonjs/extensions/zenodo/ui.d.ts +61 -0
  131. package/lib/commonjs/extensions/zenodo/ui.js +306 -0
  132. package/lib/commonjs/mol-canvas3d/camera/stereo.js +1 -1
  133. package/lib/commonjs/mol-canvas3d/camera/util.js +1 -1
  134. package/lib/commonjs/mol-canvas3d/camera.js +2 -1
  135. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -0
  136. package/lib/commonjs/mol-canvas3d/canvas3d.js +14 -14
  137. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  138. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +1 -1
  139. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -0
  140. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +5 -5
  141. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  142. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +5 -5
  143. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  144. package/lib/commonjs/mol-canvas3d/helper/helper.js +1 -1
  145. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +2 -2
  146. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
  147. package/lib/commonjs/mol-canvas3d/passes/fxaa.js +3 -3
  148. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
  149. package/lib/commonjs/mol-canvas3d/passes/image.js +1 -1
  150. package/lib/commonjs/mol-canvas3d/passes/marking.js +6 -6
  151. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +3 -3
  152. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +12 -12
  153. package/lib/commonjs/mol-canvas3d/passes/smaa.js +9 -9
  154. package/lib/commonjs/mol-canvas3d/passes/wboit.js +3 -3
  155. package/lib/commonjs/mol-canvas3d/util.js +2 -2
  156. package/lib/commonjs/mol-data/db/column.d.ts +10 -3
  157. package/lib/commonjs/mol-data/db/column.js +40 -18
  158. package/lib/commonjs/mol-data/db/table.js +1 -1
  159. package/lib/commonjs/mol-data/db.js +1 -1
  160. package/lib/commonjs/mol-data/generic.js +3 -3
  161. package/lib/commonjs/mol-data/index.js +4 -4
  162. package/lib/commonjs/mol-data/int/interval.js +1 -1
  163. package/lib/commonjs/mol-data/int/ordered-set.js +1 -1
  164. package/lib/commonjs/mol-data/int/segmentation.js +1 -1
  165. package/lib/commonjs/mol-data/int/sorted-array.js +1 -1
  166. package/lib/commonjs/mol-data/util.js +7 -7
  167. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +4 -2
  168. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -4
  169. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -3
  170. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +1 -1
  171. package/lib/commonjs/mol-geo/geometry/image/image.js +3 -3
  172. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  173. package/lib/commonjs/mol-geo/geometry/lines/lines.js +3 -3
  174. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +1 -1
  175. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +5 -3
  176. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
  177. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +4 -4
  178. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  179. package/lib/commonjs/mol-geo/geometry/points/points.js +3 -3
  180. package/lib/commonjs/mol-geo/geometry/size-data.js +1 -1
  181. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -1
  182. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +4 -4
  183. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
  184. package/lib/commonjs/mol-geo/geometry/text/text-builder.js +3 -2
  185. package/lib/commonjs/mol-geo/geometry/text/text.js +3 -3
  186. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +1 -1
  187. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +10 -8
  188. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +2 -1
  189. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +4 -4
  190. package/lib/commonjs/mol-geo/primitive/circle.js +1 -1
  191. package/lib/commonjs/mol-geo/primitive/cylinder.js +1 -1
  192. package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
  193. package/lib/commonjs/mol-geo/primitive/prism.js +1 -1
  194. package/lib/commonjs/mol-geo/primitive/star.js +1 -1
  195. package/lib/commonjs/mol-geo/primitive/torus.js +1 -1
  196. package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +9 -9
  197. package/lib/commonjs/mol-gl/compute/grid3d.js +5 -5
  198. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +3 -3
  199. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +3 -3
  200. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +3 -3
  201. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  202. package/lib/commonjs/mol-gl/compute/util.js +3 -3
  203. package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
  204. package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
  205. package/lib/commonjs/mol-gl/renderable/image.js +3 -3
  206. package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
  207. package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
  208. package/lib/commonjs/mol-gl/renderable/points.js +3 -3
  209. package/lib/commonjs/mol-gl/renderable/schema.js +1 -1
  210. package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
  211. package/lib/commonjs/mol-gl/renderable/text.js +3 -3
  212. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
  213. package/lib/commonjs/mol-gl/renderable/util.js +1 -1
  214. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +2 -2
  215. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +2 -2
  216. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  217. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  218. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
  219. package/lib/commonjs/mol-gl/shader/image.frag.js +2 -2
  220. package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
  221. package/lib/commonjs/mol-gl/shader/lines.frag.js +2 -2
  222. package/lib/commonjs/mol-gl/shader/points.frag.d.ts +2 -2
  223. package/lib/commonjs/mol-gl/shader/points.frag.js +2 -2
  224. package/lib/commonjs/mol-gl/shader/text.frag.d.ts +2 -2
  225. package/lib/commonjs/mol-gl/shader/text.frag.js +2 -2
  226. package/lib/commonjs/mol-gl/shader-code.js +2 -1
  227. package/lib/commonjs/mol-gl/webgl/buffer.d.ts +2 -2
  228. package/lib/commonjs/mol-gl/webgl/buffer.js +16 -17
  229. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  230. package/lib/commonjs/mol-gl/webgl/context.js +5 -5
  231. package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
  232. package/lib/commonjs/mol-gl/webgl/program.js +10 -4
  233. package/lib/commonjs/mol-gl/webgl/render-item.js +1 -1
  234. package/lib/commonjs/mol-gl/webgl/resources.js +2 -2
  235. package/lib/commonjs/mol-io/common/binary-cif/classifier.js +7 -6
  236. package/lib/commonjs/mol-io/common/binary-cif/decoder.js +4 -3
  237. package/lib/commonjs/mol-io/common/binary-cif.js +3 -3
  238. package/lib/commonjs/mol-io/common/io-buffer.d.ts +206 -0
  239. package/lib/commonjs/mol-io/common/io-buffer.js +408 -0
  240. package/lib/commonjs/mol-io/common/netcdf/reader.d.ts +78 -0
  241. package/lib/commonjs/mol-io/common/netcdf/reader.js +459 -0
  242. package/lib/commonjs/mol-io/common/typed-array.js +2 -2
  243. package/lib/commonjs/mol-io/reader/ccp4/parser.js +8 -8
  244. package/lib/commonjs/mol-io/reader/cif/binary/parser.js +3 -3
  245. package/lib/commonjs/mol-io/reader/cif/data-model.js +1 -1
  246. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +8 -8
  247. package/lib/commonjs/mol-io/reader/cif/schema/bird.js +12 -11
  248. package/lib/commonjs/mol-io/reader/cif/schema/ccd-extras.d.ts +1 -1
  249. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +12 -12
  250. package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +13 -12
  251. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +5 -5
  252. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.js +4 -4
  253. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +31 -27
  254. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +44 -39
  255. package/lib/commonjs/mol-io/reader/cif/schema.d.ts +1 -1
  256. package/lib/commonjs/mol-io/reader/cif/schema.js +24 -4
  257. package/lib/commonjs/mol-io/reader/cif/text/parser.js +7 -7
  258. package/lib/commonjs/mol-io/reader/cif.js +1 -1
  259. package/lib/commonjs/mol-io/reader/common/text/tokenizer.js +4 -4
  260. package/lib/commonjs/mol-io/reader/csv/data-model.js +1 -1
  261. package/lib/commonjs/mol-io/reader/csv/parser.js +7 -7
  262. package/lib/commonjs/mol-io/reader/cube/parser.js +2 -2
  263. package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
  264. package/lib/commonjs/mol-io/reader/dsn6/parser.js +8 -8
  265. package/lib/commonjs/mol-io/reader/dx/parser.js +4 -4
  266. package/lib/commonjs/mol-io/reader/gro/parser.js +6 -6
  267. package/lib/commonjs/mol-io/reader/mol/parser.js +2 -2
  268. package/lib/commonjs/mol-io/reader/mol2/parser.js +8 -8
  269. package/lib/commonjs/mol-io/reader/nctraj/parser.d.ts +18 -0
  270. package/lib/commonjs/mol-io/reader/nctraj/parser.js +101 -0
  271. package/lib/commonjs/mol-io/reader/obj/parser.js +4 -4
  272. package/lib/commonjs/mol-io/reader/pdb/parser.js +2 -2
  273. package/lib/commonjs/mol-io/reader/ply/parser.js +4 -4
  274. package/lib/commonjs/mol-io/reader/prmtop/parser.d.ts +58 -0
  275. package/lib/commonjs/mol-io/reader/prmtop/parser.js +172 -0
  276. package/lib/commonjs/mol-io/reader/psf/parser.js +8 -8
  277. package/lib/commonjs/mol-io/reader/sdf/parser.js +2 -2
  278. package/lib/commonjs/mol-io/reader/top/parser.d.ts +37 -0
  279. package/lib/commonjs/mol-io/reader/top/parser.js +303 -0
  280. package/lib/commonjs/mol-io/reader/trr/parser.d.ts +22 -0
  281. package/lib/commonjs/mol-io/reader/trr/parser.js +146 -0
  282. package/lib/commonjs/mol-io/reader/xtc/parser.js +4 -4
  283. package/lib/commonjs/mol-io/reader/xyz/parser.js +2 -2
  284. package/lib/commonjs/mol-io/writer/cif/encoder.js +3 -2
  285. package/lib/commonjs/mol-io/writer/cif.js +1 -1
  286. package/lib/commonjs/mol-io/writer/ligand-encoder.js +1 -1
  287. package/lib/commonjs/mol-io/writer/mol/encoder.js +2 -2
  288. package/lib/commonjs/mol-io/writer/mol2/encoder.js +1 -1
  289. package/lib/commonjs/mol-math/geometry/boundary-helper.js +5 -5
  290. package/lib/commonjs/mol-math/geometry/common.d.ts +2 -1
  291. package/lib/commonjs/mol-math/geometry/common.js +1 -1
  292. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.d.ts +1 -1
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-
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- //
99
- // 1. Correct color not being inherited.
100
- // Known issue: affects color of disabled elements.
101
- // 2. Correct font properties not being inherited.
102
- // 3. Address margins set differently in Firefox 4+, Safari, and Chrome.
103
- //
104
-
105
- button,
106
- input,
107
- optgroup,
108
- select,
109
- textarea {
110
- color: inherit; // 1
111
- font: inherit; // 2
112
- margin: 0; // 3
113
- }
114
-
115
- //
116
- // Address `overflow` set to `hidden` in IE 8/9/10/11.
117
- //
118
-
119
- button {
120
- overflow: visible;
121
- }
122
-
123
- //
124
- // Address inconsistent `text-transform` inheritance for `button` and `select`.
125
- // All other form control elements do not inherit `text-transform` values.
126
- // Correct `button` style inheritance in Firefox, IE 8/9/10/11, and Opera.
127
- // Correct `select` style inheritance in Firefox.
128
- //
129
-
130
- button,
131
- select {
132
- text-transform: none;
133
- }
134
-
135
- //
136
- // 1. Avoid the WebKit bug in Android 4.0.* where (2) destroys native `audio`
137
- // and `video` controls.
138
- // 2. Correct inability to style clickable `input` types in iOS.
139
- // 3. Improve usability and consistency of cursor style between image-type
140
- // `input` and others.
141
- //
142
-
143
- button,
144
- html input[type="button"], // 1
145
- input[type="reset"],
146
- input[type="submit"] {
147
- -webkit-appearance: button; // 2
148
- cursor: pointer; // 3
149
- }
150
-
151
- //
152
- // Re-set default cursor for disabled elements.
153
- //
154
-
155
- button[disabled],
156
- html input[disabled] {
157
- cursor: default;
158
- }
159
-
160
- //
161
- // Remove inner padding and border in Firefox 4+.
162
- //
163
-
164
- button::-moz-focus-inner,
165
- input::-moz-focus-inner {
166
- border: 0;
167
- padding: 0;
168
- }
169
-
170
- //
171
- // Address Firefox 4+ setting `line-height` on `input` using `!important` in
172
- // the UA stylesheet.
173
- //
174
-
175
- input {
176
- line-height: normal;
177
- }
178
-
179
- //
180
- // It's recommended that you don't attempt to style these elements.
181
- // Firefox's implementation doesn't respect box-sizing, padding, or width.
182
- //
183
- // 1. Address box sizing set to `content-box` in IE 8/9/10.
184
- // 2. Remove excess padding in IE 8/9/10.
185
- //
186
-
187
- input[type="checkbox"],
188
- input[type="radio"] {
189
- box-sizing: border-box; // 1
190
- padding: 0; // 2
191
- }
192
-
193
- //
194
- // Fix the cursor style for Chrome's increment/decrement buttons. For certain
195
- // `font-size` values of the `input`, it causes the cursor style of the
196
- // decrement button to change from `default` to `text`.
197
- //
198
-
199
- input[type="number"]::-webkit-inner-spin-button,
200
- input[type="number"]::-webkit-outer-spin-button {
201
- height: auto;
202
- }
203
-
204
- //
205
- // Remove default vertical scrollbar in IE 8/9/10/11.
206
- //
207
-
208
- textarea {
209
- overflow: auto;
1
+ /*! normalize.css v3.0.3 | MIT License | github.com/necolas/normalize.css */
2
+
3
+ //
4
+ // 1. Set default font family to sans-serif.
5
+ // 2. Prevent iOS and IE text size adjust after device orientation change,
6
+ // without disabling user zoom.
7
+ //
8
+ * {
9
+ box-sizing: border-box; // 1
10
+ }
11
+
12
+ //
13
+ // Address `[hidden]` styling not present in IE 8/9/10.
14
+ // Hide the `template` element in IE 8/9/10/11, Safari, and Firefox < 22.
15
+ //
16
+
17
+ [hidden],
18
+ template {
19
+ display: none;
20
+ }
21
+
22
+ // Links
23
+ // ==========================================================================
24
+
25
+ //
26
+ // Remove the gray background color from active links in IE 10.
27
+ //
28
+
29
+ a {
30
+ background-color: transparent;
31
+ }
32
+
33
+ //
34
+ // Improve readability of focused elements when they are also in an
35
+ // active/hover state.
36
+ //
37
+
38
+ a:active,
39
+ a:hover {
40
+ outline: 0;
41
+ }
42
+
43
+ // Text-level semantics
44
+ // ==========================================================================
45
+
46
+ //
47
+ // Address styling not present in IE 8/9/10/11, Safari, and Chrome.
48
+ //
49
+
50
+ abbr[title] {
51
+ border-bottom: 1px dotted;
52
+ }
53
+
54
+ //
55
+ // Address style set to `bolder` in Firefox 4+, Safari, and Chrome.
56
+ //
57
+
58
+ b,
59
+ strong {
60
+ font-weight: bold;
61
+ }
62
+
63
+ //
64
+ // Address inconsistent and variable font size in all browsers.
65
+ //
66
+
67
+ small {
68
+ font-size: 80%;
69
+ }
70
+
71
+ // Embedded content
72
+ // ==========================================================================
73
+
74
+ //
75
+ // Remove border when inside `a` element in IE 8/9/10.
76
+ //
77
+
78
+ img {
79
+ border: 0;
80
+ }
81
+
82
+ //
83
+ // Correct overflow not hidden in IE 9/10/11.
84
+ //
85
+
86
+ svg:not(:root) {
87
+ overflow: hidden;
88
+ }
89
+
90
+ // Forms
91
+ // ==========================================================================
92
+
93
+ //
94
+ // Known limitation: by default, Chrome and Safari on OS X allow very limited
95
+ // styling of `select`, unless a `border` property is set.
96
+ //
97
+
98
+ //
99
+ // 1. Correct color not being inherited.
100
+ // Known issue: affects color of disabled elements.
101
+ // 2. Correct font properties not being inherited.
102
+ // 3. Address margins set differently in Firefox 4+, Safari, and Chrome.
103
+ //
104
+
105
+ button,
106
+ input,
107
+ optgroup,
108
+ select,
109
+ textarea {
110
+ color: inherit; // 1
111
+ font: inherit; // 2
112
+ margin: 0; // 3
113
+ }
114
+
115
+ //
116
+ // Address `overflow` set to `hidden` in IE 8/9/10/11.
117
+ //
118
+
119
+ button {
120
+ overflow: visible;
121
+ }
122
+
123
+ //
124
+ // Address inconsistent `text-transform` inheritance for `button` and `select`.
125
+ // All other form control elements do not inherit `text-transform` values.
126
+ // Correct `button` style inheritance in Firefox, IE 8/9/10/11, and Opera.
127
+ // Correct `select` style inheritance in Firefox.
128
+ //
129
+
130
+ button,
131
+ select {
132
+ text-transform: none;
133
+ }
134
+
135
+ //
136
+ // 1. Avoid the WebKit bug in Android 4.0.* where (2) destroys native `audio`
137
+ // and `video` controls.
138
+ // 2. Correct inability to style clickable `input` types in iOS.
139
+ // 3. Improve usability and consistency of cursor style between image-type
140
+ // `input` and others.
141
+ //
142
+
143
+ button,
144
+ html input[type="button"], // 1
145
+ input[type="reset"],
146
+ input[type="submit"] {
147
+ -webkit-appearance: button; // 2
148
+ cursor: pointer; // 3
149
+ }
150
+
151
+ //
152
+ // Re-set default cursor for disabled elements.
153
+ //
154
+
155
+ button[disabled],
156
+ html input[disabled] {
157
+ cursor: default;
158
+ }
159
+
160
+ //
161
+ // Remove inner padding and border in Firefox 4+.
162
+ //
163
+
164
+ button::-moz-focus-inner,
165
+ input::-moz-focus-inner {
166
+ border: 0;
167
+ padding: 0;
168
+ }
169
+
170
+ //
171
+ // Address Firefox 4+ setting `line-height` on `input` using `!important` in
172
+ // the UA stylesheet.
173
+ //
174
+
175
+ input {
176
+ line-height: normal;
177
+ }
178
+
179
+ //
180
+ // It's recommended that you don't attempt to style these elements.
181
+ // Firefox's implementation doesn't respect box-sizing, padding, or width.
182
+ //
183
+ // 1. Address box sizing set to `content-box` in IE 8/9/10.
184
+ // 2. Remove excess padding in IE 8/9/10.
185
+ //
186
+
187
+ input[type="checkbox"],
188
+ input[type="radio"] {
189
+ box-sizing: border-box; // 1
190
+ padding: 0; // 2
191
+ }
192
+
193
+ //
194
+ // Fix the cursor style for Chrome's increment/decrement buttons. For certain
195
+ // `font-size` values of the `input`, it causes the cursor style of the
196
+ // decrement button to change from `default` to `text`.
197
+ //
198
+
199
+ input[type="number"]::-webkit-inner-spin-button,
200
+ input[type="number"]::-webkit-outer-spin-button {
201
+ height: auto;
202
+ }
203
+
204
+ //
205
+ // Remove default vertical scrollbar in IE 8/9/10/11.
206
+ //
207
+
208
+ textarea {
209
+ overflow: auto;
210
210
  }
@@ -1,41 +1,41 @@
1
-
2
- @mixin non-selectable {
3
- -webkit-user-select: none; /* Chrome/Safari */
4
- -moz-user-select: none; /* Firefox */
5
- -ms-user-select: none; /* IE10+ */
6
- /* Rules below not implemented in browsers yet */
7
- -o-user-select: none;
8
- user-select: none;
9
-
10
- cursor: default;
11
- }
12
-
13
- ::-webkit-scrollbar {
14
- width: 10px;
15
- height:10px;
16
- }
17
-
18
- ::-webkit-scrollbar-track {
19
- //-webkit-box-shadow: inset 0 0 6px rgba(0,0,0,0.8);
20
- border-radius: 0;
21
- background-color: color-lower-contrast($control-background, 4%);
22
- }
23
-
24
- ::-webkit-scrollbar-thumb {
25
- border-radius: 0;
26
- //-webkit-box-shadow: inset 0 0 6px rgba(0,0,0,0.9);
27
- background-color: color-lower-contrast($control-background, 8%);
28
- }
29
-
30
- @import 'components/controls-base';
31
- @import 'components/controls';
32
- @import 'components/slider';
33
- @import 'components/misc';
34
- @import 'components/tasks';
35
- @import 'components/viewport';
36
- @import 'components/log';
37
- @import 'components/sequence';
38
- @import 'components/transformer';
39
- @import 'components/toast';
40
- @import 'components/help';
1
+
2
+ @mixin non-selectable {
3
+ -webkit-user-select: none; /* Chrome/Safari */
4
+ -moz-user-select: none; /* Firefox */
5
+ -ms-user-select: none; /* IE10+ */
6
+ /* Rules below not implemented in browsers yet */
7
+ -o-user-select: none;
8
+ user-select: none;
9
+
10
+ cursor: default;
11
+ }
12
+
13
+ ::-webkit-scrollbar {
14
+ width: 10px;
15
+ height:10px;
16
+ }
17
+
18
+ ::-webkit-scrollbar-track {
19
+ //-webkit-box-shadow: inset 0 0 6px rgba(0,0,0,0.8);
20
+ border-radius: 0;
21
+ background-color: color-lower-contrast($control-background, 4%);
22
+ }
23
+
24
+ ::-webkit-scrollbar-thumb {
25
+ border-radius: 0;
26
+ //-webkit-box-shadow: inset 0 0 6px rgba(0,0,0,0.9);
27
+ background-color: color-lower-contrast($control-background, 8%);
28
+ }
29
+
30
+ @import 'components/controls-base';
31
+ @import 'components/controls';
32
+ @import 'components/slider';
33
+ @import 'components/misc';
34
+ @import 'components/tasks';
35
+ @import 'components/viewport';
36
+ @import 'components/log';
37
+ @import 'components/sequence';
38
+ @import 'components/transformer';
39
+ @import 'components/toast';
40
+ @import 'components/help';
41
41
  @import 'components/line-graph';
@@ -1,86 +1,86 @@
1
-
2
- // measures
3
-
4
- $control-label-width: 110px;
5
- $control-label-short-width: 70px;
6
- $row-height: 32px;
7
- $control-spacing: 10px;
8
- $entity-subtree-offset: 8px;
9
- $info-vertical-padding: 3px;
10
- $slider-border-radius-base: 6px;
11
-
12
- // layout
13
- $expanded-top-height: 100px;
14
- $expanded-bottom-height: 70px; // 3 * $row-height + 2;
15
- $expanded-right-width: 300px;
16
- $expanded-left-width: 330px;
17
-
18
- $collapsed-left-width: $row-height;
19
-
20
- $expanded-portrait-bottom-height: 10 * ($row-height + 1) + 3 * $control-spacing + 1;
21
- $expanded-portrait-top-height: 3 * $row-height + 1;
22
-
23
- $standard-bottom-height: 8 * ($row-height + 1) + 3 * $control-spacing + 1;
24
- $standard-top-height: 3 * $row-height + 1;
25
-
26
-
27
- $color-accent-cyan: color-lower-contrast(#95a5a6, 15%);
28
- $color-accent-red: color-lower-contrast(#e74c3c, 15%);
29
- $color-accent-gray: color-lower-contrast(#34495e, 10%);
30
- $color-accent-green: color-lower-contrast(#2ecc71, 10%);
31
- $color-accent-purple: color-lower-contrast(#9b59b6, 10%);
32
- $color-accent-blue: color-lower-contrast(#3498db, 5%);
33
- $color-accent-orange: color-lower-contrast(#e67e22, 5%);
34
-
35
- // TypeClass = 'Root' | 'Group' | 'Data' | 'Object' | 'Representation3D' | 'Behavior'
36
-
37
- $type-class-Root: $default-background;
38
- $type-class-Data: color-lower-contrast(#95a5a6, 15%);
39
- $type-class-Object: color-lower-contrast(#2ecc71, 10%);
40
- $type-class-Behavior: color-lower-contrast(#9b59b6, 10%);
41
- $type-class-Representation3D: color-lower-contrast(#3498db, 5%);
42
- $type-class-Group: color-lower-contrast(#e67e22, 5%);
43
-
44
- //////////////////////////////////////////////////
45
- // COLORS and COMPUTED COLORS
46
-
47
- $slider-disabledColor: #ccc;
48
-
49
- $control-background: color-increase-contrast($default-background, 6.5%);
50
- $border-color: color-increase-contrast($default-background, 15%);
51
- $msp-form-control-background: color-lower-contrast($default-background, 2.5%);
52
-
53
- // buttons
54
- $msp-btn-link-font-color: $font-color;
55
- $msp-btn-link-toggle-on-font-color: $font-color;
56
- $msp-btn-link-toggle-off-font-color: color-lower-contrast($font-color, 33%);
57
-
58
- // used for "actions" -- i.e. + in selection
59
- $msp-btn-remove-font-color: $font-color;
60
-
61
- $msp-btn-action-background: $msp-form-control-background;
62
-
63
- // update selection etc
64
- //!! $msp-btn-commit-on-font-color: $entity-current-font-color;
65
- $msp-btn-commit-on-hover-font-color: color-lower-contrast($msp-btn-commit-on-font-color, 20%); //!!Change
66
- $msp-btn-commit-on-background: color-lower-contrast($default-background, 2%);
67
- $msp-btn-commit-off-background: color-lower-contrast($default-background, 4%); //$control-background;
68
- $msp-btn-commit-off-font-color: $font-color;
69
-
70
- // log
71
- $log-font-color: color-lower-contrast($font-color, 5%);
72
- $log-timestamp-font-color: color-lower-contrast($font-color, 20%);
73
-
74
- // highlight
75
- $highlight-info-font-color: $hover-font-color;
76
- $highlight-info-additional-font-color: color-lower-contrast($hover-font-color, 20%);
77
-
78
- // entity state
79
- $entity-color-fully-visible: $font-color;
80
- $entity-color-not-visible: color-lower-contrast($font-color, 66%);
81
- $entity-color-partialy-visible: color-lower-contrast($font-color, 33%);
82
- $entity-tag-color: color-lower-contrast($font-color, 20%);
83
-
84
- // sequence
85
- $sequence-background: $default-background;
1
+
2
+ // measures
3
+
4
+ $control-label-width: 110px;
5
+ $control-label-short-width: 70px;
6
+ $row-height: 32px;
7
+ $control-spacing: 10px;
8
+ $entity-subtree-offset: 8px;
9
+ $info-vertical-padding: 3px;
10
+ $slider-border-radius-base: 6px;
11
+
12
+ // layout
13
+ $expanded-top-height: 100px;
14
+ $expanded-bottom-height: 70px; // 3 * $row-height + 2;
15
+ $expanded-right-width: 300px;
16
+ $expanded-left-width: 330px;
17
+
18
+ $collapsed-left-width: $row-height;
19
+
20
+ $expanded-portrait-bottom-height: 10 * ($row-height + 1) + 3 * $control-spacing + 1;
21
+ $expanded-portrait-top-height: 3 * $row-height + 1;
22
+
23
+ $standard-bottom-height: 8 * ($row-height + 1) + 3 * $control-spacing + 1;
24
+ $standard-top-height: 3 * $row-height + 1;
25
+
26
+
27
+ $color-accent-cyan: color-lower-contrast(#95a5a6, 15%);
28
+ $color-accent-red: color-lower-contrast(#e74c3c, 15%);
29
+ $color-accent-gray: color-lower-contrast(#34495e, 10%);
30
+ $color-accent-green: color-lower-contrast(#2ecc71, 10%);
31
+ $color-accent-purple: color-lower-contrast(#9b59b6, 10%);
32
+ $color-accent-blue: color-lower-contrast(#3498db, 5%);
33
+ $color-accent-orange: color-lower-contrast(#e67e22, 5%);
34
+
35
+ // TypeClass = 'Root' | 'Group' | 'Data' | 'Object' | 'Representation3D' | 'Behavior'
36
+
37
+ $type-class-Root: $default-background;
38
+ $type-class-Data: color-lower-contrast(#95a5a6, 15%);
39
+ $type-class-Object: color-lower-contrast(#2ecc71, 10%);
40
+ $type-class-Behavior: color-lower-contrast(#9b59b6, 10%);
41
+ $type-class-Representation3D: color-lower-contrast(#3498db, 5%);
42
+ $type-class-Group: color-lower-contrast(#e67e22, 5%);
43
+
44
+ //////////////////////////////////////////////////
45
+ // COLORS and COMPUTED COLORS
46
+
47
+ $slider-disabledColor: #ccc;
48
+
49
+ $control-background: color-increase-contrast($default-background, 6.5%);
50
+ $border-color: color-increase-contrast($default-background, 15%);
51
+ $msp-form-control-background: color-lower-contrast($default-background, 2.5%);
52
+
53
+ // buttons
54
+ $msp-btn-link-font-color: $font-color;
55
+ $msp-btn-link-toggle-on-font-color: $font-color;
56
+ $msp-btn-link-toggle-off-font-color: color-lower-contrast($font-color, 33%);
57
+
58
+ // used for "actions" -- i.e. + in selection
59
+ $msp-btn-remove-font-color: $font-color;
60
+
61
+ $msp-btn-action-background: $msp-form-control-background;
62
+
63
+ // update selection etc
64
+ //!! $msp-btn-commit-on-font-color: $entity-current-font-color;
65
+ $msp-btn-commit-on-hover-font-color: color-lower-contrast($msp-btn-commit-on-font-color, 20%); //!!Change
66
+ $msp-btn-commit-on-background: color-lower-contrast($default-background, 2%);
67
+ $msp-btn-commit-off-background: color-lower-contrast($default-background, 4%); //$control-background;
68
+ $msp-btn-commit-off-font-color: $font-color;
69
+
70
+ // log
71
+ $log-font-color: color-lower-contrast($font-color, 5%);
72
+ $log-timestamp-font-color: color-lower-contrast($font-color, 20%);
73
+
74
+ // highlight
75
+ $highlight-info-font-color: $hover-font-color;
76
+ $highlight-info-additional-font-color: color-lower-contrast($hover-font-color, 20%);
77
+
78
+ // entity state
79
+ $entity-color-fully-visible: $font-color;
80
+ $entity-color-not-visible: color-lower-contrast($font-color, 66%);
81
+ $entity-color-partialy-visible: color-lower-contrast($font-color, 33%);
82
+ $entity-tag-color: color-lower-contrast($font-color, 20%);
83
+
84
+ // sequence
85
+ $sequence-background: $default-background;
86
86
  $sequence-number-color: $hover-font-color;
@@ -1,2 +1,2 @@
1
- @import 'colors/blue';
1
+ @import 'colors/blue';
2
2
  @import 'base/base';