molstar 3.3.1 → 3.6.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1114) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -194
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/build/viewer/molstar.js.LICENSE.txt +12 -14
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/index.js +1 -1
  9. package/lib/apps/docking-viewer/viewport.js +1 -1
  10. package/lib/apps/viewer/app.d.ts +7 -6
  11. package/lib/apps/viewer/app.js +3 -1
  12. package/lib/apps/viewer/embedded.html +43 -43
  13. package/lib/apps/viewer/index.html +106 -106
  14. package/lib/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  15. package/lib/cli/chem-comp-dict/create-saccharides.js +67 -0
  16. package/lib/cli/chem-comp-dict/util.d.ts +20 -20
  17. package/lib/cli/cif2bcif/converter.js +1 -1
  18. package/lib/cli/cif2bcif/index.js +4 -4
  19. package/lib/cli/cifschema/util/cif-dic.d.ts +1 -1
  20. package/lib/cli/cifschema/util/cif-dic.js +7 -5
  21. package/lib/cli/cifschema/util/generate.d.ts +1 -1
  22. package/lib/cli/cifschema/util/generate.js +12 -3
  23. package/lib/cli/cifschema/util/schema.d.ts +3 -3
  24. package/lib/cli/cifschema/util/schema.js +1 -1
  25. package/lib/commonjs/apps/docking-viewer/index.js +14 -14
  26. package/lib/commonjs/apps/docking-viewer/viewport.js +33 -33
  27. package/lib/commonjs/apps/viewer/app.d.ts +7 -6
  28. package/lib/commonjs/apps/viewer/app.js +26 -24
  29. package/lib/commonjs/apps/viewer/index.js +1 -1
  30. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +6 -6
  31. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  32. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +69 -0
  33. package/lib/commonjs/cli/chem-comp-dict/create-table.js +8 -8
  34. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +20 -20
  35. package/lib/commonjs/cli/chem-comp-dict/util.js +17 -17
  36. package/lib/commonjs/cli/cif2bcif/converter.js +9 -9
  37. package/lib/commonjs/cli/cif2bcif/index.js +12 -12
  38. package/lib/commonjs/cli/cifschema/index.js +27 -27
  39. package/lib/commonjs/cli/cifschema/util/cif-dic.d.ts +1 -1
  40. package/lib/commonjs/cli/cifschema/util/cif-dic.js +8 -6
  41. package/lib/commonjs/cli/cifschema/util/generate.d.ts +1 -1
  42. package/lib/commonjs/cli/cifschema/util/generate.js +12 -3
  43. package/lib/commonjs/cli/cifschema/util/schema.d.ts +3 -3
  44. package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
  45. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  46. package/lib/commonjs/cli/state-docs/index.js +2 -2
  47. package/lib/commonjs/cli/structure-info/helpers.js +11 -11
  48. package/lib/commonjs/cli/structure-info/model.js +15 -15
  49. package/lib/commonjs/cli/structure-info/volume.js +9 -9
  50. package/lib/commonjs/examples/alpha-orbitals/controls.js +3 -3
  51. package/lib/commonjs/examples/alpha-orbitals/index.js +12 -12
  52. package/lib/commonjs/examples/basic-wrapper/controls.js +2 -2
  53. package/lib/commonjs/examples/basic-wrapper/index.js +23 -23
  54. package/lib/commonjs/examples/basic-wrapper/superposition.js +8 -8
  55. package/lib/commonjs/examples/domain-annotation-server/mapping.js +3 -3
  56. package/lib/commonjs/examples/domain-annotation-server/server.js +6 -6
  57. package/lib/commonjs/examples/domain-annotation-server/test.js +3 -3
  58. package/lib/commonjs/examples/lighting/index.js +7 -7
  59. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +2 -2
  60. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +4 -4
  61. package/lib/commonjs/examples/proteopedia-wrapper/index.js +27 -27
  62. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +2 -2
  63. package/lib/commonjs/examples/task.js +15 -15
  64. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +2 -2
  65. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +1 -1
  66. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -2
  67. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -2
  68. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -2
  69. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +13 -13
  70. package/lib/commonjs/extensions/anvil/algorithm.js +13 -13
  71. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  72. package/lib/commonjs/extensions/anvil/behavior.js +14 -14
  73. package/lib/commonjs/extensions/anvil/prop.js +7 -7
  74. package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
  75. package/lib/commonjs/extensions/anvil/representation.js +5 -5
  76. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  77. package/lib/commonjs/extensions/cellpack/model.js +26 -24
  78. package/lib/commonjs/extensions/cellpack/preset.js +6 -6
  79. package/lib/commonjs/extensions/cellpack/property.js +3 -3
  80. package/lib/commonjs/extensions/cellpack/representation.d.ts +1 -0
  81. package/lib/commonjs/extensions/cellpack/representation.js +2 -2
  82. package/lib/commonjs/extensions/cellpack/state.js +13 -13
  83. package/lib/commonjs/extensions/cellpack/util.js +14 -14
  84. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
  85. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.d.ts +397 -2
  86. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +223 -131
  87. package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js +6 -8
  88. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  89. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +2 -2
  90. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +19 -20
  91. package/lib/commonjs/extensions/g3d/data.js +6 -6
  92. package/lib/commonjs/extensions/g3d/format.js +14 -14
  93. package/lib/commonjs/extensions/g3d/model.js +4 -4
  94. package/lib/commonjs/extensions/geo-export/controls.js +3 -3
  95. package/lib/commonjs/extensions/geo-export/glb-exporter.js +9 -9
  96. package/lib/commonjs/extensions/geo-export/index.js +1 -1
  97. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +12 -12
  98. package/lib/commonjs/extensions/geo-export/obj-exporter.js +7 -7
  99. package/lib/commonjs/extensions/geo-export/stl-exporter.js +7 -7
  100. package/lib/commonjs/extensions/geo-export/ui.js +7 -7
  101. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +9 -9
  102. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +9 -9
  103. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +4 -4
  104. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +4 -4
  105. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +5 -5
  106. package/lib/commonjs/extensions/model-export/export.js +4 -4
  107. package/lib/commonjs/extensions/model-export/index.js +1 -1
  108. package/lib/commonjs/extensions/model-export/ui.js +5 -5
  109. package/lib/commonjs/extensions/mp4-export/controls.js +5 -5
  110. package/lib/commonjs/extensions/mp4-export/encoder.js +4 -4
  111. package/lib/commonjs/extensions/mp4-export/index.js +1 -1
  112. package/lib/commonjs/extensions/mp4-export/ui.js +5 -5
  113. package/lib/commonjs/extensions/pdbe/preferred-assembly.js +2 -2
  114. package/lib/commonjs/extensions/pdbe/struct-ref-domain.js +2 -2
  115. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
  116. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +8 -8
  117. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -0
  118. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +17 -17
  119. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +2 -2
  120. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +9 -9
  121. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -0
  122. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +6 -6
  123. package/lib/commonjs/extensions/rcsb/assembly-symmetry/ui.js +9 -9
  124. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +17 -17
  125. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +15 -15
  126. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  127. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +3 -3
  128. package/lib/commonjs/extensions/zenodo/index.d.ts +7 -0
  129. package/lib/commonjs/extensions/zenodo/index.js +35 -0
  130. package/lib/commonjs/extensions/zenodo/ui.d.ts +61 -0
  131. package/lib/commonjs/extensions/zenodo/ui.js +306 -0
  132. package/lib/commonjs/mol-canvas3d/camera/stereo.js +1 -1
  133. package/lib/commonjs/mol-canvas3d/camera/util.js +1 -1
  134. package/lib/commonjs/mol-canvas3d/camera.js +2 -1
  135. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -0
  136. package/lib/commonjs/mol-canvas3d/canvas3d.js +14 -14
  137. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  138. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +1 -1
  139. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -0
  140. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +5 -5
  141. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  142. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +5 -5
  143. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  144. package/lib/commonjs/mol-canvas3d/helper/helper.js +1 -1
  145. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +2 -2
  146. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
  147. package/lib/commonjs/mol-canvas3d/passes/fxaa.js +3 -3
  148. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
  149. package/lib/commonjs/mol-canvas3d/passes/image.js +1 -1
  150. package/lib/commonjs/mol-canvas3d/passes/marking.js +6 -6
  151. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +3 -3
  152. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +12 -12
  153. package/lib/commonjs/mol-canvas3d/passes/smaa.js +9 -9
  154. package/lib/commonjs/mol-canvas3d/passes/wboit.js +3 -3
  155. package/lib/commonjs/mol-canvas3d/util.js +2 -2
  156. package/lib/commonjs/mol-data/db/column.d.ts +10 -3
  157. package/lib/commonjs/mol-data/db/column.js +40 -18
  158. package/lib/commonjs/mol-data/db/table.js +1 -1
  159. package/lib/commonjs/mol-data/db.js +1 -1
  160. package/lib/commonjs/mol-data/generic.js +3 -3
  161. package/lib/commonjs/mol-data/index.js +4 -4
  162. package/lib/commonjs/mol-data/int/interval.js +1 -1
  163. package/lib/commonjs/mol-data/int/ordered-set.js +1 -1
  164. package/lib/commonjs/mol-data/int/segmentation.js +1 -1
  165. package/lib/commonjs/mol-data/int/sorted-array.js +1 -1
  166. package/lib/commonjs/mol-data/util.js +7 -7
  167. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +4 -2
  168. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -4
  169. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -3
  170. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +1 -1
  171. package/lib/commonjs/mol-geo/geometry/image/image.js +3 -3
  172. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  173. package/lib/commonjs/mol-geo/geometry/lines/lines.js +3 -3
  174. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +1 -1
  175. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +5 -3
  176. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
  177. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +4 -4
  178. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  179. package/lib/commonjs/mol-geo/geometry/points/points.js +3 -3
  180. package/lib/commonjs/mol-geo/geometry/size-data.js +1 -1
  181. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -1
  182. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +4 -4
  183. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
  184. package/lib/commonjs/mol-geo/geometry/text/text-builder.js +3 -2
  185. package/lib/commonjs/mol-geo/geometry/text/text.js +3 -3
  186. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +1 -1
  187. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +10 -8
  188. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +2 -1
  189. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +4 -4
  190. package/lib/commonjs/mol-geo/primitive/circle.js +1 -1
  191. package/lib/commonjs/mol-geo/primitive/cylinder.js +1 -1
  192. package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
  193. package/lib/commonjs/mol-geo/primitive/prism.js +1 -1
  194. package/lib/commonjs/mol-geo/primitive/star.js +1 -1
  195. package/lib/commonjs/mol-geo/primitive/torus.js +1 -1
  196. package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +9 -9
  197. package/lib/commonjs/mol-gl/compute/grid3d.js +5 -5
  198. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +3 -3
  199. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +3 -3
  200. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +3 -3
  201. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  202. package/lib/commonjs/mol-gl/compute/util.js +3 -3
  203. package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
  204. package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
  205. package/lib/commonjs/mol-gl/renderable/image.js +3 -3
  206. package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
  207. package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
  208. package/lib/commonjs/mol-gl/renderable/points.js +3 -3
  209. package/lib/commonjs/mol-gl/renderable/schema.js +1 -1
  210. package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
  211. package/lib/commonjs/mol-gl/renderable/text.js +3 -3
  212. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
  213. package/lib/commonjs/mol-gl/renderable/util.js +1 -1
  214. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +2 -2
  215. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +2 -2
  216. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  217. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  218. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
  219. package/lib/commonjs/mol-gl/shader/image.frag.js +2 -2
  220. package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
  221. package/lib/commonjs/mol-gl/shader/lines.frag.js +2 -2
  222. package/lib/commonjs/mol-gl/shader/points.frag.d.ts +2 -2
  223. package/lib/commonjs/mol-gl/shader/points.frag.js +2 -2
  224. package/lib/commonjs/mol-gl/shader/text.frag.d.ts +2 -2
  225. package/lib/commonjs/mol-gl/shader/text.frag.js +2 -2
  226. package/lib/commonjs/mol-gl/shader-code.js +2 -1
  227. package/lib/commonjs/mol-gl/webgl/buffer.d.ts +2 -2
  228. package/lib/commonjs/mol-gl/webgl/buffer.js +16 -17
  229. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  230. package/lib/commonjs/mol-gl/webgl/context.js +5 -5
  231. package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
  232. package/lib/commonjs/mol-gl/webgl/program.js +10 -4
  233. package/lib/commonjs/mol-gl/webgl/render-item.js +1 -1
  234. package/lib/commonjs/mol-gl/webgl/resources.js +2 -2
  235. package/lib/commonjs/mol-io/common/binary-cif/classifier.js +7 -6
  236. package/lib/commonjs/mol-io/common/binary-cif/decoder.js +4 -3
  237. package/lib/commonjs/mol-io/common/binary-cif.js +3 -3
  238. package/lib/commonjs/mol-io/common/io-buffer.d.ts +206 -0
  239. package/lib/commonjs/mol-io/common/io-buffer.js +408 -0
  240. package/lib/commonjs/mol-io/common/netcdf/reader.d.ts +78 -0
  241. package/lib/commonjs/mol-io/common/netcdf/reader.js +459 -0
  242. package/lib/commonjs/mol-io/common/typed-array.js +2 -2
  243. package/lib/commonjs/mol-io/reader/ccp4/parser.js +8 -8
  244. package/lib/commonjs/mol-io/reader/cif/binary/parser.js +3 -3
  245. package/lib/commonjs/mol-io/reader/cif/data-model.js +1 -1
  246. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +8 -8
  247. package/lib/commonjs/mol-io/reader/cif/schema/bird.js +12 -11
  248. package/lib/commonjs/mol-io/reader/cif/schema/ccd-extras.d.ts +1 -1
  249. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +12 -12
  250. package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +13 -12
  251. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +5 -5
  252. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.js +4 -4
  253. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +31 -27
  254. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +44 -39
  255. package/lib/commonjs/mol-io/reader/cif/schema.d.ts +1 -1
  256. package/lib/commonjs/mol-io/reader/cif/schema.js +24 -4
  257. package/lib/commonjs/mol-io/reader/cif/text/parser.js +7 -7
  258. package/lib/commonjs/mol-io/reader/cif.js +1 -1
  259. package/lib/commonjs/mol-io/reader/common/text/tokenizer.js +4 -4
  260. package/lib/commonjs/mol-io/reader/csv/data-model.js +1 -1
  261. package/lib/commonjs/mol-io/reader/csv/parser.js +7 -7
  262. package/lib/commonjs/mol-io/reader/cube/parser.js +2 -2
  263. package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
  264. package/lib/commonjs/mol-io/reader/dsn6/parser.js +8 -8
  265. package/lib/commonjs/mol-io/reader/dx/parser.js +4 -4
  266. package/lib/commonjs/mol-io/reader/gro/parser.js +6 -6
  267. package/lib/commonjs/mol-io/reader/mol/parser.js +2 -2
  268. package/lib/commonjs/mol-io/reader/mol2/parser.js +8 -8
  269. package/lib/commonjs/mol-io/reader/nctraj/parser.d.ts +18 -0
  270. package/lib/commonjs/mol-io/reader/nctraj/parser.js +101 -0
  271. package/lib/commonjs/mol-io/reader/obj/parser.js +4 -4
  272. package/lib/commonjs/mol-io/reader/pdb/parser.js +2 -2
  273. package/lib/commonjs/mol-io/reader/ply/parser.js +4 -4
  274. package/lib/commonjs/mol-io/reader/prmtop/parser.d.ts +58 -0
  275. package/lib/commonjs/mol-io/reader/prmtop/parser.js +172 -0
  276. package/lib/commonjs/mol-io/reader/psf/parser.js +8 -8
  277. package/lib/commonjs/mol-io/reader/sdf/parser.js +2 -2
  278. package/lib/commonjs/mol-io/reader/top/parser.d.ts +37 -0
  279. package/lib/commonjs/mol-io/reader/top/parser.js +303 -0
  280. package/lib/commonjs/mol-io/reader/trr/parser.d.ts +22 -0
  281. package/lib/commonjs/mol-io/reader/trr/parser.js +146 -0
  282. package/lib/commonjs/mol-io/reader/xtc/parser.js +4 -4
  283. package/lib/commonjs/mol-io/reader/xyz/parser.js +2 -2
  284. package/lib/commonjs/mol-io/writer/cif/encoder.js +3 -2
  285. package/lib/commonjs/mol-io/writer/cif.js +1 -1
  286. package/lib/commonjs/mol-io/writer/ligand-encoder.js +1 -1
  287. package/lib/commonjs/mol-io/writer/mol/encoder.js +2 -2
  288. package/lib/commonjs/mol-io/writer/mol2/encoder.js +1 -1
  289. package/lib/commonjs/mol-math/geometry/boundary-helper.js +5 -5
  290. package/lib/commonjs/mol-math/geometry/common.d.ts +2 -1
  291. package/lib/commonjs/mol-math/geometry/common.js +1 -1
  292. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.d.ts +1 -1
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  1100. package/lib/mol-task/util/scheduler.d.ts +2 -2
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  1113. package/lib/commonjs/mol-plugin-state/formats/structure.js +0 -64
  1114. package/lib/mol-plugin-state/formats/structure.js +0 -61
@@ -17,7 +17,7 @@ var parameters_1 = require("../controls/parameters");
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  var update_transform_1 = require("../state/update-transform");
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  var generic_1 = require("./generic");
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  var StructureComponentControls = /** @class */ (function (_super) {
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- (0, tslib_1.__extends)(StructureComponentControls, _super);
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+ tslib_1.__extends(StructureComponentControls, _super);
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  function StructureComponentControls() {
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  return _super !== null && _super.apply(this, arguments) || this;
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  }
@@ -36,13 +36,13 @@ var StructureComponentControls = /** @class */ (function (_super) {
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  }); });
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  };
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  StructureComponentControls.prototype.renderControls = function () {
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- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(ComponentEditorControls, {}, void 0), (0, jsx_runtime_1.jsx)(ComponentListControls, {}, void 0), (0, jsx_runtime_1.jsx)(generic_1.GenericEntryListControls, {}, void 0)] }, void 0);
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+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(ComponentEditorControls, {}), (0, jsx_runtime_1.jsx)(ComponentListControls, {}), (0, jsx_runtime_1.jsx)(generic_1.GenericEntryListControls, {})] });
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  };
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  return StructureComponentControls;
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  }(base_1.CollapsableControls));
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  exports.StructureComponentControls = StructureComponentControls;
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  var ComponentEditorControls = /** @class */ (function (_super) {
45
- (0, tslib_1.__extends)(ComponentEditorControls, _super);
45
+ tslib_1.__extends(ComponentEditorControls, _super);
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  function ComponentEditorControls() {
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  var _this = _super !== null && _super.apply(this, arguments) || this;
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  _this.state = {
@@ -99,7 +99,7 @@ var ComponentEditorControls = /** @class */ (function (_super) {
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  };
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  Object.defineProperty(ComponentEditorControls.prototype, "presetControls", {
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  get: function () {
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- return (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.presetActions, onSelect: this.applyPreset }, void 0);
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+ return (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.presetActions, onSelect: this.applyPreset });
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  },
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  enumerable: false,
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@@ -117,12 +117,12 @@ var ComponentEditorControls = /** @class */ (function (_super) {
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  var undoTitle = this.state.canUndo
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  ? "Undo ".concat(this.plugin.state.data.latestUndoLabel)
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  : 'Some mistakes of the past can be undone.';
120
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.BookmarksOutlinedSvg, label: 'Preset', title: 'Apply a representation preset for the current structure(s).', toggle: this.togglePreset, isSelected: this.state.action === 'preset', disabled: this.isDisabled }, void 0), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.AddSvg, label: 'Add', title: 'Add a new representation component for a selection.', toggle: this.toggleAdd, isSelected: this.state.action === 'add', disabled: this.isDisabled }, void 0), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.TuneSvg, label: '', title: 'Options that are applied to all applicable representations.', style: { flex: '0 0 40px', padding: 0 }, toggle: this.toggleOptions, isSelected: this.state.action === 'options', disabled: this.isDisabled }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.RestoreSvg, className: 'msp-flex-item', flex: '40px', onClick: this.undo, disabled: !this.state.canUndo || this.isDisabled, title: undoTitle }, void 0)] }), void 0), this.state.action === 'preset' && this.presetControls, this.state.action === 'add' && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset' }, { children: (0, jsx_runtime_1.jsx)(AddComponentControls, { onApply: this.hideAction }, void 0) }), void 0), this.state.action === 'options' && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset' }, { children: (0, jsx_runtime_1.jsx)(ComponentOptionsControls, { isDisabled: this.isDisabled }, void 0) }), void 0)] }, void 0);
120
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.BookmarksOutlinedSvg, label: 'Preset', title: 'Apply a representation preset for the current structure(s).', toggle: this.togglePreset, isSelected: this.state.action === 'preset', disabled: this.isDisabled }), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.AddSvg, label: 'Add', title: 'Add a new representation component for a selection.', toggle: this.toggleAdd, isSelected: this.state.action === 'add', disabled: this.isDisabled }), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.TuneSvg, label: '', title: 'Options that are applied to all applicable representations.', style: { flex: '0 0 40px', padding: 0 }, toggle: this.toggleOptions, isSelected: this.state.action === 'options', disabled: this.isDisabled }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.RestoreSvg, className: 'msp-flex-item', flex: '40px', onClick: this.undo, disabled: !this.state.canUndo || this.isDisabled, title: undoTitle })] })), this.state.action === 'preset' && this.presetControls, this.state.action === 'add' && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-offset' }, { children: (0, jsx_runtime_1.jsx)(AddComponentControls, { onApply: this.hideAction }) })), this.state.action === 'options' && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-offset' }, { children: (0, jsx_runtime_1.jsx)(ComponentOptionsControls, { isDisabled: this.isDisabled }) }))] });
121
121
  };
122
122
  return ComponentEditorControls;
123
123
  }(base_1.PurePluginUIComponent));
124
124
  var AddComponentControls = /** @class */ (function (_super) {
125
- (0, tslib_1.__extends)(AddComponentControls, _super);
125
+ tslib_1.__extends(AddComponentControls, _super);
126
126
  function AddComponentControls() {
127
127
  var _this = _super !== null && _super.apply(this, arguments) || this;
128
128
  _this.state = _this.createState();
@@ -153,13 +153,13 @@ var AddComponentControls = /** @class */ (function (_super) {
153
153
  configurable: true
154
154
  });
155
155
  AddComponentControls.prototype.render = function () {
156
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: this.state.params, values: this.state.values, onChangeValues: this.paramsChanged }, void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ icon: icons_1.AddSvg, title: 'Use Selection and optional Representation to create a new Component.', className: 'msp-btn-commit msp-btn-commit-on', onClick: this.apply, style: { marginTop: '1px' } }, { children: "Create Component" }), void 0)] }, void 0);
156
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: this.state.params, values: this.state.values, onChangeValues: this.paramsChanged }), (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ icon: icons_1.AddSvg, title: 'Use Selection and optional Representation to create a new Component.', className: 'msp-btn-commit msp-btn-commit-on', onClick: this.apply, style: { marginTop: '1px' } }, { children: "Create Component" }))] });
157
157
  };
158
158
  return AddComponentControls;
159
159
  }(base_1.PurePluginUIComponent));
160
160
  exports.AddComponentControls = AddComponentControls;
161
161
  var ComponentOptionsControls = /** @class */ (function (_super) {
162
- (0, tslib_1.__extends)(ComponentOptionsControls, _super);
162
+ tslib_1.__extends(ComponentOptionsControls, _super);
163
163
  function ComponentOptionsControls() {
164
164
  var _this = _super !== null && _super.apply(this, arguments) || this;
165
165
  _this.update = function (options) { return _this.plugin.managers.structure.component.setOptions(options); };
@@ -170,12 +170,12 @@ var ComponentOptionsControls = /** @class */ (function (_super) {
170
170
  this.subscribe(this.plugin.managers.structure.component.events.optionsUpdated, function () { return _this.forceUpdate(); });
171
171
  };
172
172
  ComponentOptionsControls.prototype.render = function () {
173
- return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: component_1.StructureComponentManager.OptionsParams, values: this.plugin.managers.structure.component.state.options, onChangeValues: this.update, isDisabled: this.props.isDisabled }, void 0);
173
+ return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: component_1.StructureComponentManager.OptionsParams, values: this.plugin.managers.structure.component.state.options, onChangeValues: this.update, isDisabled: this.props.isDisabled });
174
174
  };
175
175
  return ComponentOptionsControls;
176
176
  }(base_1.PurePluginUIComponent));
177
177
  var ComponentListControls = /** @class */ (function (_super) {
178
- (0, tslib_1.__extends)(ComponentListControls, _super);
178
+ tslib_1.__extends(ComponentListControls, _super);
179
179
  function ComponentListControls() {
180
180
  return _super !== null && _super.apply(this, arguments) || this;
181
181
  }
@@ -189,12 +189,12 @@ var ComponentListControls = /** @class */ (function (_super) {
189
189
  var componentGroups = this.plugin.managers.structure.hierarchy.currentComponentGroups;
190
190
  if (componentGroups.length === 0)
191
191
  return null;
192
- return (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ style: { marginTop: '6px' } }, { children: componentGroups.map(function (g) { return (0, jsx_runtime_1.jsx)(StructureComponentGroup, { group: g }, g[0].cell.transform.ref); }) }), void 0);
192
+ return (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ style: { marginTop: '6px' } }, { children: componentGroups.map(function (g) { return (0, jsx_runtime_1.jsx)(StructureComponentGroup, { group: g }, g[0].cell.transform.ref); }) }));
193
193
  };
194
194
  return ComponentListControls;
195
195
  }(base_1.PurePluginUIComponent));
196
196
  var StructureComponentGroup = /** @class */ (function (_super) {
197
- (0, tslib_1.__extends)(StructureComponentGroup, _super);
197
+ tslib_1.__extends(StructureComponentGroup, _super);
198
198
  function StructureComponentGroup() {
199
199
  var _this = _super !== null && _super.apply(this, arguments) || this;
200
200
  _this.state = { action: void 0 };
@@ -281,13 +281,13 @@ var StructureComponentGroup = /** @class */ (function (_super) {
281
281
  var _this = this;
282
282
  var mng = this.plugin.managers.structure.component;
283
283
  var ret = [
284
- (0, tslib_1.__spreadArray)([
284
+ tslib_1.__spreadArray([
285
285
  action_menu_1.ActionMenu.Header('Add Representation')
286
286
  ], component_1.StructureComponentManager.getRepresentationTypes(this.plugin, this.props.group[0])
287
287
  .map(function (t) { return action_menu_1.ActionMenu.Item(t[1], function () { return mng.addRepresentation(_this.props.group, t[0]); }); }), true)
288
288
  ];
289
289
  if (this.pivot.representations.length > 0) {
290
- ret.push((0, tslib_1.__spreadArray)([
290
+ ret.push(tslib_1.__spreadArray([
291
291
  action_menu_1.ActionMenu.Header('Set Coloring', { isIndependent: true })
292
292
  ], this.colorByActions, true));
293
293
  }
@@ -329,12 +329,12 @@ var StructureComponentGroup = /** @class */ (function (_super) {
329
329
  var cell = component.cell;
330
330
  var label = (_a = cell.obj) === null || _a === void 0 ? void 0 : _a.label;
331
331
  var reprLabel = this.reprLabel;
332
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsxs)(common_1.Button, (0, tslib_1.__assign)({ noOverflow: true, className: 'msp-control-button-label', title: "".concat(label, ". Click to focus."), onClick: this.focus, onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: { textAlign: 'left' } }, { children: [label, (0, jsx_runtime_1.jsx)("small", (0, tslib_1.__assign)({ className: 'msp-25-lower-contrast-text', style: { float: 'right' } }, { children: reprLabel }), void 0)] }), void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: cell.state.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: "".concat(cell.state.isHidden ? 'Show' : 'Hide', " component"), small: true, className: 'msp-form-control', flex: true }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, toggleState: false, onClick: this.remove, title: 'Remove', small: true, className: 'msp-form-control', flex: true }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.MoreHorizSvg, onClick: this.toggleAction, title: 'Actions', toggleState: this.state.action === 'action', className: 'msp-form-control', flex: true }, void 0)] }), void 0), this.state.action === 'label' && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset', style: { marginBottom: '6px' } }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlRow, { label: 'Label', control: (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { display: 'flex', textAlignLast: 'center' } }, { children: [(0, jsx_runtime_1.jsx)(common_1.TextInput, { onChange: this.updateLabel, value: label, style: { flex: '1 1 auto', minWidth: 0 }, className: 'msp-form-control', blurOnEnter: true, blurOnEscape: true }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.CheckSvg, onClick: this.toggleLabel, className: 'msp-form-control msp-control-button-label', flex: true }, void 0)] }), void 0) }, void 0) }), void 0), this.state.action === 'action' && (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-accent-offset' }, { children: [(0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ style: { marginBottom: '6px' } }, { children: (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.actions, onSelect: this.selectAction, noOffset: true }, void 0) }), void 0), (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ style: { marginBottom: '6px' } }, { children: component.representations.map(function (r) { return (0, jsx_runtime_1.jsx)(StructureRepresentationEntry, { group: _this.props.group, representation: r }, r.cell.transform.ref); }) }), void 0)] }), void 0)] }, void 0);
332
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsxs)(common_1.Button, tslib_1.__assign({ noOverflow: true, className: 'msp-control-button-label', title: "".concat(label, ". Click to focus."), onClick: this.focus, onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: { textAlign: 'left' } }, { children: [label, (0, jsx_runtime_1.jsx)("small", tslib_1.__assign({ className: 'msp-25-lower-contrast-text', style: { float: 'right' } }, { children: reprLabel }))] })), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: cell.state.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: "".concat(cell.state.isHidden ? 'Show' : 'Hide', " component"), small: true, className: 'msp-form-control', flex: true }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, toggleState: false, onClick: this.remove, title: 'Remove', small: true, className: 'msp-form-control', flex: true }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.MoreHorizSvg, onClick: this.toggleAction, title: 'Actions', toggleState: this.state.action === 'action', className: 'msp-form-control', flex: true })] })), this.state.action === 'label' && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-offset', style: { marginBottom: '6px' } }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlRow, { label: 'Label', control: (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ style: { display: 'flex', textAlignLast: 'center' } }, { children: [(0, jsx_runtime_1.jsx)(common_1.TextInput, { onChange: this.updateLabel, value: label, style: { flex: '1 1 auto', minWidth: 0 }, className: 'msp-form-control', blurOnEnter: true, blurOnEscape: true }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.CheckSvg, onClick: this.toggleLabel, className: 'msp-form-control msp-control-button-label', flex: true })] })) }) })), this.state.action === 'action' && (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-accent-offset' }, { children: [(0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ style: { marginBottom: '6px' } }, { children: (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.actions, onSelect: this.selectAction, noOffset: true }) })), (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ style: { marginBottom: '6px' } }, { children: component.representations.map(function (r) { return (0, jsx_runtime_1.jsx)(StructureRepresentationEntry, { group: _this.props.group, representation: r }, r.cell.transform.ref); }) }))] }))] });
333
333
  };
334
334
  return StructureComponentGroup;
335
335
  }(base_1.PurePluginUIComponent));
336
336
  var StructureRepresentationEntry = /** @class */ (function (_super) {
337
- (0, tslib_1.__extends)(StructureRepresentationEntry, _super);
337
+ tslib_1.__extends(StructureRepresentationEntry, _super);
338
338
  function StructureRepresentationEntry() {
339
339
  var _this = _super !== null && _super.apply(this, arguments) || this;
340
340
  _this.remove = function () { return _this.plugin.managers.structure.component.removeRepresentations(_this.props.group, _this.props.representation); };
@@ -356,11 +356,11 @@ var StructureRepresentationEntry = /** @class */ (function (_super) {
356
356
  StructureRepresentationEntry.prototype.render = function () {
357
357
  var _a;
358
358
  var repr = this.props.representation.cell;
359
- return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-representation-entry' }, { children: [repr.parent && (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, (0, tslib_1.__assign)({ header: "".concat(((_a = repr.obj) === null || _a === void 0 ? void 0 : _a.label) || '', " Representation"), noOffset: true }, { children: (0, jsx_runtime_1.jsx)(update_transform_1.UpdateTransformControl, { state: repr.parent, transform: repr.transform, customHeader: 'none', customUpdate: this.update, noMargin: true }, void 0) }), void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, onClick: this.remove, title: 'Remove', small: true, className: 'msp-default-bg', toggleState: false, style: {
359
+ return (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-representation-entry' }, { children: [repr.parent && (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, tslib_1.__assign({ header: "".concat(((_a = repr.obj) === null || _a === void 0 ? void 0 : _a.label) || '', " Representation"), noOffset: true }, { children: (0, jsx_runtime_1.jsx)(update_transform_1.UpdateTransformControl, { state: repr.parent, transform: repr.transform, customHeader: 'none', customUpdate: this.update, noMargin: true }) })), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, onClick: this.remove, title: 'Remove', small: true, className: 'msp-default-bg', toggleState: false, style: {
360
360
  position: 'absolute', top: 0, right: '32px', lineHeight: '24px', height: '24px', textAlign: 'right', width: '44px', paddingRight: '6px', background: 'none'
361
- } }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: this.props.representation.cell.state.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: 'Toggle Visibility', small: true, className: 'msp-default-bg', style: {
361
+ } }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: this.props.representation.cell.state.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: 'Toggle Visibility', small: true, className: 'msp-default-bg', style: {
362
362
  position: 'absolute', top: 0, right: 0, lineHeight: '24px', height: '24px', textAlign: 'right', width: '32px', paddingRight: '6px', background: 'none'
363
- } }, void 0)] }), void 0);
363
+ } })] }));
364
364
  };
365
365
  return StructureRepresentationEntry;
366
366
  }(base_1.PurePluginUIComponent));
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -4,7 +4,7 @@ exports.StructureFocusControls = void 0;
4
4
  var tslib_1 = require("tslib");
5
5
  var jsx_runtime_1 = require("react/jsx-runtime");
6
6
  /**
7
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
7
+ * Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
8
8
  *
9
9
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
10
10
  */
@@ -92,7 +92,7 @@ function getFocusEntries(structure) {
92
92
  return entries;
93
93
  }
94
94
  var StructureFocusControls = /** @class */ (function (_super) {
95
- (0, tslib_1.__extends)(StructureFocusControls, _super);
95
+ tslib_1.__extends(StructureFocusControls, _super);
96
96
  function StructureFocusControls() {
97
97
  var _this = _super !== null && _super.apply(this, arguments) || this;
98
98
  _this.state = { isBusy: false, showAction: false };
@@ -105,7 +105,7 @@ var StructureFocusControls = /** @class */ (function (_super) {
105
105
  if (d) {
106
106
  var entries = getFocusEntries(d);
107
107
  if (entries.length > 0) {
108
- presetItems.push((0, tslib_1.__spreadArray)([
108
+ presetItems.push(tslib_1.__spreadArray([
109
109
  action_menu_1.ActionMenu.Header(d.label, { description: d.label })
110
110
  ], action_menu_1.ActionMenu.createItems(entries, {
111
111
  label: function (f) { return f.label; },
@@ -167,7 +167,7 @@ var StructureFocusControls = /** @class */ (function (_super) {
167
167
  };
168
168
  Object.defineProperty(StructureFocusControls.prototype, "isDisabled", {
169
169
  get: function () {
170
- return this.state.isBusy || this.actionItems.length === 0;
170
+ return this.state.isBusy || this.plugin.managers.structure.hierarchy.selection.structures.length === 0;
171
171
  },
172
172
  enumerable: false,
173
173
  configurable: true
@@ -177,7 +177,7 @@ var StructureFocusControls = /** @class */ (function (_super) {
177
177
  var historyItems = [];
178
178
  var history = this.plugin.managers.structure.focus.history;
179
179
  if (history.length > 0) {
180
- historyItems.push((0, tslib_1.__spreadArray)([
180
+ historyItems.push(tslib_1.__spreadArray([
181
181
  action_menu_1.ActionMenu.Header('History', { description: 'Previously focused on items.' })
182
182
  ], action_menu_1.ActionMenu.createItems(history, {
183
183
  label: function (f) { return f.label; },
@@ -225,7 +225,7 @@ var StructureFocusControls = /** @class */ (function (_super) {
225
225
  title += "\nor use '".concat(binding, "' on element");
226
226
  }
227
227
  }
228
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ noOverflow: true, onClick: this.focusCamera, title: title, onMouseEnter: this.highlightCurrent, onMouseLeave: this.clearHighlights, disabled: this.isDisabled || !current, style: { textAlignLast: current ? 'left' : void 0 } }, { children: label }), void 0), current && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.CancelOutlinedSvg, onClick: this.clear, title: 'Clear', className: 'msp-form-control', flex: true, disabled: this.isDisabled }, void 0), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.CenterFocusStrongSvg, title: 'Select a focus target to center on an show its surroundings. Hold shift to focus on multiple targets.', toggle: this.toggleAction, isSelected: this.state.showAction, disabled: this.isDisabled, style: { flex: '0 0 40px', padding: 0 } }, void 0)] }), void 0), this.state.showAction && (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.actionItems, onSelect: this.selectAction }, void 0)] }, void 0);
228
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ noOverflow: true, onClick: this.focusCamera, title: title, onMouseEnter: this.highlightCurrent, onMouseLeave: this.clearHighlights, disabled: this.isDisabled || !current, style: { textAlignLast: current ? 'left' : void 0 } }, { children: label })), current && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.CancelOutlinedSvg, onClick: this.clear, title: 'Clear', className: 'msp-form-control', flex: true, disabled: this.isDisabled }), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.CenterFocusStrongSvg, title: 'Select a focus target to center on an show its surroundings. Hold shift to focus on multiple targets.', toggle: this.toggleAction, isSelected: this.state.showAction, disabled: this.isDisabled, style: { flex: '0 0 40px', padding: 0 } })] })), this.state.showAction && (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.actionItems, onSelect: this.selectAction })] });
229
229
  };
230
230
  return StructureFocusControls;
231
231
  }(base_1.PluginUIComponent));
@@ -10,7 +10,7 @@ var common_1 = require("../controls/common");
10
10
  var update_transform_1 = require("../state/update-transform");
11
11
  var icons_1 = require("../controls/icons");
12
12
  var GenericEntryListControls = /** @class */ (function (_super) {
13
- (0, tslib_1.__extends)(GenericEntryListControls, _super);
13
+ tslib_1.__extends(GenericEntryListControls, _super);
14
14
  function GenericEntryListControls() {
15
15
  return _super !== null && _super.apply(this, arguments) || this;
16
16
  }
@@ -40,7 +40,7 @@ var GenericEntryListControls = /** @class */ (function (_super) {
40
40
  }
41
41
  if (refs.length === 0)
42
42
  return null;
43
- return (0, jsx_runtime_1.jsx)(GenericEntry, { refs: refs, labelMultiple: 'Unit Cells' }, void 0);
43
+ return (0, jsx_runtime_1.jsx)(GenericEntry, { refs: refs, labelMultiple: 'Unit Cells' });
44
44
  },
45
45
  enumerable: false,
46
46
  configurable: true
@@ -52,7 +52,7 @@ var GenericEntryListControls = /** @class */ (function (_super) {
52
52
  this.plugin.genericRepresentationControls.forEach(function (provider, key) {
53
53
  var _a = provider(_this.plugin.managers.structure.hierarchy.selection), refs = _a[0], labelMultiple = _a[1];
54
54
  if (refs.length > 0) {
55
- controls.push((0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)(GenericEntry, { refs: refs, labelMultiple: labelMultiple }, void 0) }, key));
55
+ controls.push((0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)(GenericEntry, { refs: refs, labelMultiple: labelMultiple }) }, key));
56
56
  }
57
57
  });
58
58
  return controls.length > 0 ? controls : null;
@@ -61,13 +61,13 @@ var GenericEntryListControls = /** @class */ (function (_super) {
61
61
  configurable: true
62
62
  });
63
63
  GenericEntryListControls.prototype.render = function () {
64
- return (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { marginTop: '6px' } }, { children: [this.unitcell, this.customControls] }), void 0) }, void 0);
64
+ return (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ style: { marginTop: '6px' } }, { children: [this.unitcell, this.customControls] })) });
65
65
  };
66
66
  return GenericEntryListControls;
67
67
  }(base_1.PurePluginUIComponent));
68
68
  exports.GenericEntryListControls = GenericEntryListControls;
69
69
  var GenericEntry = /** @class */ (function (_super) {
70
- (0, tslib_1.__extends)(GenericEntry, _super);
70
+ tslib_1.__extends(GenericEntry, _super);
71
71
  function GenericEntry() {
72
72
  var _this = _super !== null && _super.apply(this, arguments) || this;
73
73
  _this.state = { showOptions: false };
@@ -147,7 +147,7 @@ var GenericEntry = /** @class */ (function (_super) {
147
147
  else {
148
148
  label = "".concat(refs.length, " ").concat(labelMultiple || 'Objects');
149
149
  }
150
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsxs)("button", (0, tslib_1.__assign)({ className: 'msp-form-control msp-control-button-label', title: "".concat(label, ". Click to focus."), onClick: this.focus, onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: { textAlign: 'left' } }, { children: [label, " ", (0, jsx_runtime_1.jsx)("small", { children: description }, void 0)] }), void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: pivot.cell.state.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, className: 'msp-form-control', onClick: this.toggleVisibility, title: "".concat(pivot.cell.state.isHidden ? 'Show' : 'Hide'), small: true, flex: true }, void 0), refs.length === 1 && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.MoreHorizSvg, className: 'msp-form-control', onClick: this.toggleOptions, title: 'Options', toggleState: this.state.showOptions, flex: true }, void 0)] }), void 0), (refs.length === 1 && this.state.showOptions && pivot.cell.parent) && (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset' }, { children: (0, jsx_runtime_1.jsx)(update_transform_1.UpdateTransformControl, { state: pivot.cell.parent, transform: pivot.cell.transform, customHeader: 'none', autoHideApply: true }, void 0) }), void 0) }, void 0)] }, void 0);
150
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsxs)("button", tslib_1.__assign({ className: 'msp-form-control msp-control-button-label', title: "".concat(label, ". Click to focus."), onClick: this.focus, onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: { textAlign: 'left' } }, { children: [label, " ", (0, jsx_runtime_1.jsx)("small", { children: description })] })), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: pivot.cell.state.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, className: 'msp-form-control', onClick: this.toggleVisibility, title: "".concat(pivot.cell.state.isHidden ? 'Show' : 'Hide'), small: true, flex: true }), refs.length === 1 && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.MoreHorizSvg, className: 'msp-form-control', onClick: this.toggleOptions, title: 'Options', toggleState: this.state.showOptions, flex: true })] })), (refs.length === 1 && this.state.showOptions && pivot.cell.parent) && (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-offset' }, { children: (0, jsx_runtime_1.jsx)(update_transform_1.UpdateTransformControl, { state: pivot.cell.parent, transform: pivot.cell.transform, customHeader: 'none', autoHideApply: true }) })) })] });
151
151
  };
152
152
  return GenericEntry;
153
153
  }(base_1.PurePluginUIComponent));
@@ -16,7 +16,7 @@ var update_transform_1 = require("../state/update-transform");
16
16
  var selection_1 = require("./selection");
17
17
  // TODO details, options (e.g. change text for labels)
18
18
  var StructureMeasurementsControls = /** @class */ (function (_super) {
19
- (0, tslib_1.__extends)(StructureMeasurementsControls, _super);
19
+ tslib_1.__extends(StructureMeasurementsControls, _super);
20
20
  function StructureMeasurementsControls() {
21
21
  return _super !== null && _super.apply(this, arguments) || this;
22
22
  }
@@ -28,13 +28,13 @@ var StructureMeasurementsControls = /** @class */ (function (_super) {
28
28
  };
29
29
  };
30
30
  StructureMeasurementsControls.prototype.renderControls = function () {
31
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(MeasurementControls, {}, void 0), (0, jsx_runtime_1.jsx)(MeasurementList, {}, void 0)] }, void 0);
31
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(MeasurementControls, {}), (0, jsx_runtime_1.jsx)(MeasurementList, {})] });
32
32
  };
33
33
  return StructureMeasurementsControls;
34
34
  }(base_1.CollapsableControls));
35
35
  exports.StructureMeasurementsControls = StructureMeasurementsControls;
36
36
  var MeasurementList = /** @class */ (function (_super) {
37
- (0, tslib_1.__extends)(MeasurementList, _super);
37
+ tslib_1.__extends(MeasurementList, _super);
38
38
  function MeasurementList() {
39
39
  return _super !== null && _super.apply(this, arguments) || this;
40
40
  }
@@ -51,17 +51,17 @@ var MeasurementList = /** @class */ (function (_super) {
51
51
  if (cell.obj)
52
52
  group.push((0, jsx_runtime_1.jsx)(MeasurementEntry, { cell: cell }, cell.obj.id));
53
53
  }
54
- return group.length ? (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, (0, tslib_1.__assign)({ header: header, initiallyExpanded: true }, { children: group }), void 0) : null;
54
+ return group.length ? (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, tslib_1.__assign({ header: header, initiallyExpanded: true }, { children: group })) : null;
55
55
  };
56
56
  MeasurementList.prototype.render = function () {
57
57
  var measurements = this.plugin.managers.structure.measurement.state;
58
- return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { marginTop: '6px' } }, { children: [this.renderGroup(measurements.labels, 'Labels'), this.renderGroup(measurements.distances, 'Distances'), this.renderGroup(measurements.angles, 'Angles'), this.renderGroup(measurements.dihedrals, 'Dihedrals'), this.renderGroup(measurements.orientations, 'Orientations'), this.renderGroup(measurements.planes, 'Planes')] }), void 0);
58
+ return (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ style: { marginTop: '6px' } }, { children: [this.renderGroup(measurements.labels, 'Labels'), this.renderGroup(measurements.distances, 'Distances'), this.renderGroup(measurements.angles, 'Angles'), this.renderGroup(measurements.dihedrals, 'Dihedrals'), this.renderGroup(measurements.orientations, 'Orientations'), this.renderGroup(measurements.planes, 'Planes')] }));
59
59
  };
60
60
  return MeasurementList;
61
61
  }(base_1.PurePluginUIComponent));
62
62
  exports.MeasurementList = MeasurementList;
63
63
  var MeasurementControls = /** @class */ (function (_super) {
64
- (0, tslib_1.__extends)(MeasurementControls, _super);
64
+ tslib_1.__extends(MeasurementControls, _super);
65
65
  function MeasurementControls() {
66
66
  var _this = _super !== null && _super.apply(this, arguments) || this;
67
67
  _this.state = { isBusy: false, action: void 0 };
@@ -172,7 +172,7 @@ var MeasurementControls = /** @class */ (function (_super) {
172
172
  MeasurementControls.prototype.historyEntry = function (e, idx) {
173
173
  var _this = this;
174
174
  var history = this.plugin.managers.structure.selection.additionsHistory;
175
- return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row', onMouseEnter: function () { return _this.highlight(e.loci); }, onMouseLeave: function () { return _this.plugin.managers.interactivity.lociHighlights.clearHighlights(); } }, { children: [(0, jsx_runtime_1.jsxs)(common_1.Button, (0, tslib_1.__assign)({ noOverflow: true, title: 'Click to focus. Hover to highlight.', onClick: function () { return _this.focusLoci(e.loci); }, style: { width: 'auto', textAlign: 'left' } }, { children: [idx, ". ", (0, jsx_runtime_1.jsx)("span", { dangerouslySetInnerHTML: { __html: e.label } }, void 0)] }), void 0), history.length > 1 && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.ArrowUpwardSvg, small: true, className: 'msp-form-control', onClick: function () { return _this.moveHistory(e, 'up'); }, flex: '20px', title: 'Move up' }, void 0), history.length > 1 && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.ArrowDownwardSvg, small: true, className: 'msp-form-control', onClick: function () { return _this.moveHistory(e, 'down'); }, flex: '20px', title: 'Move down' }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, small: true, className: 'msp-form-control', onClick: function () { return _this.plugin.managers.structure.selection.modifyHistory(e, 'remove'); }, flex: true, title: 'Remove' }, void 0)] }), e.id);
175
+ return (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row', onMouseEnter: function () { return _this.highlight(e.loci); }, onMouseLeave: function () { return _this.plugin.managers.interactivity.lociHighlights.clearHighlights(); } }, { children: [(0, jsx_runtime_1.jsxs)(common_1.Button, tslib_1.__assign({ noOverflow: true, title: 'Click to focus. Hover to highlight.', onClick: function () { return _this.focusLoci(e.loci); }, style: { width: 'auto', textAlign: 'left' } }, { children: [idx, ". ", (0, jsx_runtime_1.jsx)("span", { dangerouslySetInnerHTML: { __html: e.label } })] })), history.length > 1 && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.ArrowUpwardSvg, small: true, className: 'msp-form-control', onClick: function () { return _this.moveHistory(e, 'up'); }, flex: '20px', title: 'Move up' }), history.length > 1 && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.ArrowDownwardSvg, small: true, className: 'msp-form-control', onClick: function () { return _this.moveHistory(e, 'down'); }, flex: '20px', title: 'Move down' }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, small: true, className: 'msp-form-control', onClick: function () { return _this.plugin.managers.structure.selection.modifyHistory(e, 'remove'); }, flex: true, title: 'Remove' })] }), e.id);
176
176
  };
177
177
  MeasurementControls.prototype.add = function () {
178
178
  var history = this.plugin.managers.structure.selection.additionsHistory;
@@ -180,16 +180,16 @@ var MeasurementControls = /** @class */ (function (_super) {
180
180
  for (var i = 0, _i = Math.min(history.length, 4); i < _i; i++) {
181
181
  entries.push(this.historyEntry(history[i], i + 1));
182
182
  }
183
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.actions, onSelect: this.selectAction }, void 0), entries.length > 0 && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset' }, { children: entries }), void 0), entries.length === 0 && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset msp-help-text' }, { children: (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-help-description' }, { children: [(0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.HelpOutlineSvg, inline: true }, void 0), "Add one or more selections (toggle ", (0, jsx_runtime_1.jsx)(selection_1.ToggleSelectionModeButton, { inline: true }, void 0), " mode)"] }), void 0) }), void 0)] }, void 0);
183
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.actions, onSelect: this.selectAction }), entries.length > 0 && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-offset' }, { children: entries })), entries.length === 0 && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-offset msp-help-text' }, { children: (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-help-description' }, { children: [(0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.HelpOutlineSvg, inline: true }), "Add one or more selections (toggle ", (0, jsx_runtime_1.jsx)(selection_1.ToggleSelectionModeButton, { inline: true }), " mode)"] })) }))] });
184
184
  };
185
185
  MeasurementControls.prototype.render = function () {
186
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.AddSvg, label: 'Add', toggle: this.toggleAdd, isSelected: this.state.action === 'add', disabled: this.state.isBusy, className: 'msp-btn-apply-simple' }, void 0), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.TuneSvg, label: '', title: 'Options', toggle: this.toggleOptions, isSelected: this.state.action === 'options', disabled: this.state.isBusy, style: { flex: '0 0 40px', padding: 0 } }, void 0)] }), void 0), this.state.action === 'add' && this.add(), this.state.action === 'options' && (0, jsx_runtime_1.jsx)(MeasurementsOptions, {}, void 0)] }, void 0);
186
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.AddSvg, label: 'Add', toggle: this.toggleAdd, isSelected: this.state.action === 'add', disabled: this.state.isBusy, className: 'msp-btn-apply-simple' }), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.TuneSvg, label: '', title: 'Options', toggle: this.toggleOptions, isSelected: this.state.action === 'options', disabled: this.state.isBusy, style: { flex: '0 0 40px', padding: 0 } })] })), this.state.action === 'add' && this.add(), this.state.action === 'options' && (0, jsx_runtime_1.jsx)(MeasurementsOptions, {})] });
187
187
  };
188
188
  return MeasurementControls;
189
189
  }(base_1.PurePluginUIComponent));
190
190
  exports.MeasurementControls = MeasurementControls;
191
191
  var MeasurementsOptions = /** @class */ (function (_super) {
192
- (0, tslib_1.__extends)(MeasurementsOptions, _super);
192
+ tslib_1.__extends(MeasurementsOptions, _super);
193
193
  function MeasurementsOptions() {
194
194
  var _this = _super !== null && _super.apply(this, arguments) || this;
195
195
  _this.state = { isDisabled: false };
@@ -209,12 +209,12 @@ var MeasurementsOptions = /** @class */ (function (_super) {
209
209
  };
210
210
  MeasurementsOptions.prototype.render = function () {
211
211
  var measurements = this.plugin.managers.structure.measurement.state;
212
- return (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset' }, { children: (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: measurement_1.StructureMeasurementParams, values: measurements.options, onChangeValues: this.changed, isDisabled: this.state.isDisabled }, void 0) }), void 0);
212
+ return (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-offset' }, { children: (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: measurement_1.StructureMeasurementParams, values: measurements.options, onChangeValues: this.changed, isDisabled: this.state.isDisabled }) }));
213
213
  };
214
214
  return MeasurementsOptions;
215
215
  }(base_1.PurePluginUIComponent));
216
216
  var MeasurementEntry = /** @class */ (function (_super) {
217
- (0, tslib_1.__extends)(MeasurementEntry, _super);
217
+ tslib_1.__extends(MeasurementEntry, _super);
218
218
  function MeasurementEntry() {
219
219
  var _this = _super !== null && _super.apply(this, arguments) || this;
220
220
  _this.state = { showUpdate: false };
@@ -327,7 +327,7 @@ var MeasurementEntry = /** @class */ (function (_super) {
327
327
  var obj = cell.obj;
328
328
  if (!obj)
329
329
  return null;
330
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row', onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight }, { children: [(0, jsx_runtime_1.jsx)("button", (0, tslib_1.__assign)({ className: 'msp-form-control msp-control-button-label msp-no-overflow', title: 'Click to focus. Hover to highlight.', onClick: this.focus, style: { width: 'auto', textAlign: 'left' } }, { children: (0, jsx_runtime_1.jsx)("span", { dangerouslySetInnerHTML: { __html: this.label } }, void 0) }), void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: cell.state.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, small: true, className: 'msp-form-control', onClick: this.toggleVisibility, flex: true, title: cell.state.isHidden ? 'Show' : 'Hide' }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, small: true, className: 'msp-form-control', onClick: this.delete, flex: true, title: 'Delete', toggleState: false }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.MoreHorizSvg, className: 'msp-form-control', onClick: this.toggleUpdate, flex: true, title: 'Actions', toggleState: this.state.showUpdate }, void 0)] }), obj.id), this.state.showUpdate && cell.parent && (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-accent-offset' }, { children: [(0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.actions, onSelect: this.selectAction, noOffset: true }, void 0), (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, (0, tslib_1.__assign)({ header: 'Options', noOffset: true }, { children: (0, jsx_runtime_1.jsx)(update_transform_1.UpdateTransformControl, { state: cell.parent, transform: cell.transform, customHeader: 'none', autoHideApply: true }, void 0) }), void 0)] }), void 0) }, void 0)] }, void 0);
330
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row', onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight }, { children: [(0, jsx_runtime_1.jsx)("button", tslib_1.__assign({ className: 'msp-form-control msp-control-button-label msp-no-overflow', title: 'Click to focus. Hover to highlight.', onClick: this.focus, style: { width: 'auto', textAlign: 'left' } }, { children: (0, jsx_runtime_1.jsx)("span", { dangerouslySetInnerHTML: { __html: this.label } }) })), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: cell.state.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, small: true, className: 'msp-form-control', onClick: this.toggleVisibility, flex: true, title: cell.state.isHidden ? 'Show' : 'Hide' }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, small: true, className: 'msp-form-control', onClick: this.delete, flex: true, title: 'Delete', toggleState: false }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.MoreHorizSvg, className: 'msp-form-control', onClick: this.toggleUpdate, flex: true, title: 'Actions', toggleState: this.state.showUpdate })] }), obj.id), this.state.showUpdate && cell.parent && (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-accent-offset' }, { children: [(0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.actions, onSelect: this.selectAction, noOffset: true }), (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, tslib_1.__assign({ header: 'Options', noOffset: true }, { children: (0, jsx_runtime_1.jsx)(update_transform_1.UpdateTransformControl, { state: cell.parent, transform: cell.transform, customHeader: 'none', autoHideApply: true }) }))] })) })] });
331
331
  };
332
332
  return MeasurementEntry;
333
333
  }(base_1.PurePluginUIComponent));
@@ -18,7 +18,7 @@ var postprocessing_1 = require("../../mol-canvas3d/passes/postprocessing");
18
18
  var config_1 = require("../../mol-plugin/config");
19
19
  var component_1 = require("../../mol-plugin-state/manager/structure/component");
20
20
  var StructureQuickStylesControls = /** @class */ (function (_super) {
21
- (0, tslib_1.__extends)(StructureQuickStylesControls, _super);
21
+ tslib_1.__extends(StructureQuickStylesControls, _super);
22
22
  function StructureQuickStylesControls() {
23
23
  return _super !== null && _super.apply(this, arguments) || this;
24
24
  }
@@ -30,20 +30,20 @@ var StructureQuickStylesControls = /** @class */ (function (_super) {
30
30
  };
31
31
  };
32
32
  StructureQuickStylesControls.prototype.renderControls = function () {
33
- return (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: (0, jsx_runtime_1.jsx)(QuickStyles, {}, void 0) }, void 0);
33
+ return (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: (0, jsx_runtime_1.jsx)(QuickStyles, {}) });
34
34
  };
35
35
  return StructureQuickStylesControls;
36
36
  }(base_1.CollapsableControls));
37
37
  exports.StructureQuickStylesControls = StructureQuickStylesControls;
38
38
  var QuickStyles = /** @class */ (function (_super) {
39
- (0, tslib_1.__extends)(QuickStyles, _super);
39
+ tslib_1.__extends(QuickStyles, _super);
40
40
  function QuickStyles() {
41
41
  return _super !== null && _super.apply(this, arguments) || this;
42
42
  }
43
43
  QuickStyles.prototype.default = function () {
44
- return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
44
+ return tslib_1.__awaiter(this, void 0, void 0, function () {
45
45
  var structures, preset, provider, p;
46
- return (0, tslib_1.__generator)(this, function (_a) {
46
+ return tslib_1.__generator(this, function (_a) {
47
47
  switch (_a.label) {
48
48
  case 0:
49
49
  structures = this.plugin.managers.structure.hierarchy.selection.structures;
@@ -65,9 +65,9 @@ var QuickStyles = /** @class */ (function (_super) {
65
65
  });
66
66
  };
67
67
  QuickStyles.prototype.illustrative = function () {
68
- return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
68
+ return tslib_1.__awaiter(this, void 0, void 0, function () {
69
69
  var structures;
70
- return (0, tslib_1.__generator)(this, function (_a) {
70
+ return tslib_1.__generator(this, function (_a) {
71
71
  switch (_a.label) {
72
72
  case 0:
73
73
  structures = this.plugin.managers.structure.hierarchy.selection.structures;
@@ -94,10 +94,10 @@ var QuickStyles = /** @class */ (function (_super) {
94
94
  });
95
95
  };
96
96
  QuickStyles.prototype.stylized = function () {
97
- return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
97
+ return tslib_1.__awaiter(this, void 0, void 0, function () {
98
98
  var pp;
99
- return (0, tslib_1.__generator)(this, function (_a) {
100
- this.plugin.managers.structure.component.setOptions((0, tslib_1.__assign)((0, tslib_1.__assign)({}, this.plugin.managers.structure.component.state.options), { ignoreLight: true }));
99
+ return tslib_1.__generator(this, function (_a) {
100
+ this.plugin.managers.structure.component.setOptions(tslib_1.__assign(tslib_1.__assign({}, this.plugin.managers.structure.component.state.options), { ignoreLight: true }));
101
101
  if (this.plugin.canvas3d) {
102
102
  pp = this.plugin.canvas3d.props.postprocessing;
103
103
  this.plugin.canvas3d.setProps({
@@ -123,7 +123,7 @@ var QuickStyles = /** @class */ (function (_super) {
123
123
  };
124
124
  QuickStyles.prototype.render = function () {
125
125
  var _this = this;
126
- return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ noOverflow: true, title: 'Applies default representation preset. Set outline and occlusion effects to defaults.', onClick: function () { return _this.default(); }, style: { width: 'auto' } }, { children: "Default" }), void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ noOverflow: true, title: 'Applies no representation preset. Enables outline and occlusion effects. Enables ignore-light representation parameter.', onClick: function () { return _this.stylized(); }, style: { width: 'auto' } }, { children: "Stylized" }), void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ noOverflow: true, title: 'Applies illustrative representation preset. Enables outline and occlusion effects. Enables ignore-light parameter.', onClick: function () { return _this.illustrative(); }, style: { width: 'auto' } }, { children: "Illustrative" }), void 0)] }), void 0);
126
+ return (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ noOverflow: true, title: 'Applies default representation preset. Set outline and occlusion effects to defaults.', onClick: function () { return _this.default(); }, style: { width: 'auto' } }, { children: "Default" })), (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ noOverflow: true, title: 'Applies no representation preset. Enables outline and occlusion effects. Enables ignore-light representation parameter.', onClick: function () { return _this.stylized(); }, style: { width: 'auto' } }, { children: "Stylized" })), (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ noOverflow: true, title: 'Applies illustrative representation preset. Enables outline and occlusion effects. Enables ignore-light parameter.', onClick: function () { return _this.illustrative(); }, style: { width: 'auto' } }, { children: "Illustrative" }))] }));
127
127
  };
128
128
  return QuickStyles;
129
129
  }(base_1.PurePluginUIComponent));