molstar 3.3.1 → 3.6.0

package/lib/commonjs/mol-plugin-state/helpers/structure-transparency.js

@@ -15,13 +15,13 @@ var loci_1 = require("../../mol-model/loci");
 var transparency_1 = require("../../mol-theme/transparency");
 var TransparencyManagerTag = 'transparency-controls';
 function setStructureTransparency(plugin, components, value, lociGetter, types) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var _this = this;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
-                case 0: return [4 /*yield*/, eachRepr(plugin, components, function (update, repr, transparencyCell) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+                case 0: return [4 /*yield*/, eachRepr(plugin, components, function (update, repr, transparencyCell) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
                         var structure, loci, layer, bundleLayers, filtered, filtered;
-                        return (0, tslib_1.__generator)(this, function (_a) {
+                        return tslib_1.__generator(this, function (_a) {
                             switch (_a.label) {
                                 case 0:
                                     if (types && types.length > 0 && !types.includes(repr.params.values.type.name))
@@ -37,7 +37,7 @@ function setStructureTransparency(plugin, components, value, lociGetter, types)
                                         value: value,
                                     };
                                     if (transparencyCell) {
-                                        bundleLayers = (0, tslib_1.__spreadArray)((0, tslib_1.__spreadArray)([], transparencyCell.params.values.layers, true), [layer], false);
+                                        bundleLayers = tslib_1.__spreadArray(tslib_1.__spreadArray([], transparencyCell.params.values.layers, true), [layer], false);
                                         filtered = getFilteredBundle(bundleLayers, structure);
                                         update.to(transparencyCell).update(transparency_1.Transparency.toBundle(filtered));
                                     }
@@ -59,12 +59,12 @@ function setStructureTransparency(plugin, components, value, lociGetter, types)
 }
 exports.setStructureTransparency = setStructureTransparency;
 function clearStructureTransparency(plugin, components, types) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var _this = this;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
-                case 0: return [4 /*yield*/, eachRepr(plugin, components, function (update, repr, transparencyCell) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-                        return (0, tslib_1.__generator)(this, function (_a) {
+                case 0: return [4 /*yield*/, eachRepr(plugin, components, function (update, repr, transparencyCell) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                        return tslib_1.__generator(this, function (_a) {
                             if (types && types.length > 0 && !types.includes(repr.params.values.type.name))
                                 return [2 /*return*/];
                             if (transparencyCell) {
@@ -82,9 +82,9 @@ function clearStructureTransparency(plugin, components, types) {
 }
 exports.clearStructureTransparency = clearStructureTransparency;
 function eachRepr(plugin, components, callback) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var state, update, _i, components_1, c, _a, _b, r, transparency;
-        return (0, tslib_1.__generator)(this, function (_c) {
+        return tslib_1.__generator(this, function (_c) {
             switch (_c.label) {
                 case 0:
                     state = plugin.state.data;

package/lib/commonjs/mol-plugin-state/manager/animation.js

@@ -13,7 +13,7 @@ var param_definition_1 = require("../../mol-util/param-definition");
 // TODO: handle unregistered animations on state restore
 // TODO: better API
 var PluginAnimationManager = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(PluginAnimationManager, _super);
+    tslib_1.__extends(PluginAnimationManager, _super);
     function PluginAnimationManager(context) {
         var _this = _super.call(this, { params: { current: '' }, animationState: 'stopped' }) || this;
         _this.context = context;
@@ -61,7 +61,7 @@ var PluginAnimationManager = /** @class */ (function (_super) {
     PluginAnimationManager.prototype.updateParams = function (newParams) {
         if (this.isEmpty)
             return;
-        this.updateState({ params: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, this.state.params), newParams) });
+        this.updateState({ params: tslib_1.__assign(tslib_1.__assign({}, this.state.params), newParams) });
         var anim = this.map.get(this.state.params.current);
         var params = anim.params(this.context);
         this._current = {
@@ -77,7 +77,7 @@ var PluginAnimationManager = /** @class */ (function (_super) {
     PluginAnimationManager.prototype.updateCurrentParams = function (values) {
         if (this.isEmpty)
             return;
-        this._current.paramValues = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, this._current.paramValues), values);
+        this._current.paramValues = tslib_1.__assign(tslib_1.__assign({}, this._current.paramValues), values);
         this.triggerUpdate();
     };
     PluginAnimationManager.prototype.register = function (animation) {
@@ -96,8 +96,8 @@ var PluginAnimationManager = /** @class */ (function (_super) {
         }
     };
     PluginAnimationManager.prototype.play = function (animation, params) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-            return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0: return [4 /*yield*/, this.stop()];
                     case 1:
@@ -116,8 +116,8 @@ var PluginAnimationManager = /** @class */ (function (_super) {
         });
     };
     PluginAnimationManager.prototype.tick = function (t, isSynchronous, animation) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-            return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         this.currentTime = t;
@@ -137,9 +137,9 @@ var PluginAnimationManager = /** @class */ (function (_super) {
         });
     };
     PluginAnimationManager.prototype.start = function () {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var anim, initialState, state;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         this.updateState({ animationState: 'playing' });
@@ -167,9 +167,9 @@ var PluginAnimationManager = /** @class */ (function (_super) {
         });
     };
     PluginAnimationManager.prototype.stop = function () {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var anim;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         this.isStopped = true;
@@ -201,8 +201,8 @@ var PluginAnimationManager = /** @class */ (function (_super) {
         configurable: true
     });
     PluginAnimationManager.prototype.applyAsync = function () {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-            return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         if (this.isApplying)
@@ -224,9 +224,9 @@ var PluginAnimationManager = /** @class */ (function (_super) {
         });
     };
     PluginAnimationManager.prototype.applyFrame = function (animation) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var t, newState;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         t = this.currentTime;
@@ -275,9 +275,9 @@ var PluginAnimationManager = /** @class */ (function (_super) {
         }
     };
     PluginAnimationManager.prototype.resume = function () {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var anim;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         this._current.lastTime = 0;

package/lib/commonjs/mol-plugin-state/manager/camera.js

@@ -109,7 +109,7 @@ var CameraManager = /** @class */ (function () {
     };
     CameraManager.prototype.focusSphere = function (sphere, options) {
         var _a, _b, _c, _d;
-        var _e = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, DefaultCameraFocusOptions), options), extraRadius = _e.extraRadius, minRadius = _e.minRadius, durationMs = _e.durationMs;
+        var _e = tslib_1.__assign(tslib_1.__assign({}, DefaultCameraFocusOptions), options), extraRadius = _e.extraRadius, minRadius = _e.minRadius, durationMs = _e.durationMs;
         var radius = Math.max(sphere.radius + extraRadius, minRadius);
         if (options === null || options === void 0 ? void 0 : options.principalAxes) {
             var _f = options === null || options === void 0 ? void 0 : options.principalAxes.boxAxes, origin_1 = _f.origin, dirA = _f.dirA, dirC = _f.dirC;

package/lib/commonjs/mol-plugin-state/manager/interactivity.js

@@ -22,10 +22,10 @@ var DefaultInteractivityFocusOptions = {
     durationMs: 250,
 };
 var InteractivityManager = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(InteractivityManager, _super);
+    tslib_1.__extends(InteractivityManager, _super);
     function InteractivityManager(plugin, props) {
         if (props === void 0) { props = {}; }
-        var _this = _super.call(this, { props: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(InteractivityManager.Params)), props) }) || this;
+        var _this = _super.call(this, { props: tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(InteractivityManager.Params)), props) }) || this;
         _this.plugin = plugin;
         _this._props = param_definition_1.ParamDefinition.getDefaultValues(InteractivityManager.Params);
         _this.events = {
@@ -36,13 +36,13 @@ var InteractivityManager = /** @class */ (function (_super) {
         return _this;
     }
     Object.defineProperty(InteractivityManager.prototype, "props", {
-        get: function () { return (0, tslib_1.__assign)({}, this.state.props); },
+        get: function () { return tslib_1.__assign({}, this.state.props); },
         enumerable: false,
         configurable: true
     });
     InteractivityManager.prototype.setProps = function (props) {
         var old = this.props;
-        var _new = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, this.state.props), props);
+        var _new = tslib_1.__assign(tslib_1.__assign({}, this.state.props), props);
         if ((0, object_1.shallowEqual)(old, _new))
             return;
         this.updateState({ props: _new });
@@ -96,7 +96,7 @@ exports.InteractivityManager = InteractivityManager;
     InteractivityManager.LociMarkManager = LociMarkManager;
     //
     var LociHighlightManager = /** @class */ (function (_super) {
-        (0, tslib_1.__extends)(LociHighlightManager, _super);
+        tslib_1.__extends(LociHighlightManager, _super);
         function LociHighlightManager() {
             var _this = _super !== null && _super.apply(this, arguments) || this;
             _this.prev = [];
@@ -166,7 +166,7 @@ exports.InteractivityManager = InteractivityManager;
     InteractivityManager.LociHighlightManager = LociHighlightManager;
     //
     var LociSelectManager = /** @class */ (function (_super) {
-        (0, tslib_1.__extends)(LociSelectManager, _super);
+        tslib_1.__extends(LociSelectManager, _super);
         function LociSelectManager() {
             return _super !== null && _super.apply(this, arguments) || this;
         }

package/lib/commonjs/mol-plugin-state/manager/snapshots.js

@@ -16,7 +16,7 @@ var data_source_1 = require("../../mol-util/data-source");
 var object_1 = require("../../mol-util/object");
 var version_1 = require("../../mol-plugin/version");
 var PluginStateSnapshotManager = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(PluginStateSnapshotManager, _super);
+    tslib_1.__extends(PluginStateSnapshotManager, _super);
     function PluginStateSnapshotManager(plugin) {
         var _this = _super.call(this, {
             current: void 0,
@@ -30,9 +30,9 @@ var PluginStateSnapshotManager = /** @class */ (function (_super) {
             changed: _this.ev()
         };
         _this.timeoutHandle = void 0;
-        _this.next = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+        _this.next = function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
             var next, snapshot, delay;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         this.timeoutHandle = void 0;
@@ -146,9 +146,9 @@ var PluginStateSnapshotManager = /** @class */ (function (_super) {
         return this.state.entries.get(idx).snapshot.id;
     };
     PluginStateSnapshotManager.prototype.setStateSnapshot = function (snapshot) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var entries, _i, _a, e, current, entry, next;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         if (snapshot.version !== version_1.PLUGIN_VERSION) {
@@ -216,9 +216,9 @@ var PluginStateSnapshotManager = /** @class */ (function (_super) {
         };
     };
     PluginStateSnapshotManager.prototype.serialize = function (options) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var json, state, zipDataObj, assets, _i, _a, _b, asset, file, _c, _d, _e, index, data, zipFile;
-            return (0, tslib_1.__generator)(this, function (_f) {
+            return tslib_1.__generator(this, function (_f) {
                 switch (_f.label) {
                     case 0:
                         json = JSON.stringify(this.getStateSnapshot({ params: options === null || options === void 0 ? void 0 : options.params }), null, 2);
@@ -263,9 +263,9 @@ var PluginStateSnapshotManager = /** @class */ (function (_super) {
         });
     };
     PluginStateSnapshotManager.prototype.open = function (file) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-            var fn, data, snapshot, data, assets_1, stateFile, stateData, file_1, json, _a, _b, _i, json_1, _c, id, asset, snapshot, e_1;
-            return (0, tslib_1.__generator)(this, function (_d) {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
+            var fn, data, snapshot, data, assetData_1, stateFile, stateData, file_1, json, _a, _b, _i, json_1, _c, id, asset, snapshot, e_1;
+            return tslib_1.__generator(this, function (_d) {
                 switch (_d.label) {
                     case 0:
                         _d.trys.push([0, 8, , 9]);
@@ -288,12 +288,12 @@ var PluginStateSnapshotManager = /** @class */ (function (_super) {
                     case 2: return [4 /*yield*/, this.plugin.runTask((0, data_source_1.readFromFile)(file, 'zip'))];
                     case 3:
                         data = _d.sent();
-                        assets_1 = Object.create(null);
+                        assetData_1 = Object.create(null);
                         (0, object_1.objectForEach)(data, function (v, k) {
                             if (k === 'state.json' || k === 'assets.json')
                                 return;
                             var name = k.substring(k.indexOf('/') + 1);
-                            assets_1[name] = new File([v], name);
+                            assetData_1[name] = v;
                         });
                         stateFile = new File([data['state.json']], 'state.json');
                         return [4 /*yield*/, this.plugin.runTask((0, data_source_1.readFromFile)(stateFile, 'string'))];
@@ -307,7 +307,7 @@ var PluginStateSnapshotManager = /** @class */ (function (_super) {
                         json = _b.apply(_a, [_d.sent()]);
                         for (_i = 0, json_1 = json; _i < json_1.length; _i++) {
                             _c = json_1[_i], id = _c[0], asset = _c[1];
-                            this.plugin.managers.asset.set(asset, assets_1[id]);
+                            this.plugin.managers.asset.set(asset, new File([assetData_1[id]], asset.name));
                         }
                         _d.label = 6;
                     case 6:
@@ -364,7 +364,7 @@ var PluginStateSnapshotManager = /** @class */ (function (_super) {
 exports.PluginStateSnapshotManager = PluginStateSnapshotManager;
 (function (PluginStateSnapshotManager) {
     function Entry(snapshot, params) {
-        return (0, tslib_1.__assign)({ timestamp: +new Date(), snapshot: snapshot }, params);
+        return tslib_1.__assign({ timestamp: +new Date(), snapshot: snapshot }, params);
     }
     PluginStateSnapshotManager.Entry = Entry;
     function isStateSnapshot(x) {

package/lib/commonjs/mol-plugin-state/manager/structure/component.js

@@ -31,7 +31,7 @@ var structure_substance_1 = require("../../helpers/structure-substance");
 var material_1 = require("../../../mol-util/material");
 var clip_1 = require("../../../mol-util/clip");
 var StructureComponentManager = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(StructureComponentManager, _super);
+    tslib_1.__extends(StructureComponentManager, _super);
     function StructureComponentManager(plugin) {
         var _this = _super.call(this, { options: param_definition_1.ParamDefinition.getDefaultValues(StructureComponentManager.OptionsParams) }) || this;
         _this.plugin = plugin;
@@ -55,10 +55,10 @@ var StructureComponentManager = /** @class */ (function (_super) {
         configurable: true
     });
     StructureComponentManager.prototype.setOptions = function (options) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var interactionChanged, update, _i, _a, s, _b, _c, c;
             var _this = this;
-            return (0, tslib_1.__generator)(this, function (_d) {
+            return tslib_1.__generator(this, function (_d) {
                 interactionChanged = options.interactions !== this.state.options.interactions;
                 this.updateState({ options: options });
                 this.events.optionsUpdated.next(void 0);
@@ -70,8 +70,8 @@ var StructureComponentManager = /** @class */ (function (_super) {
                         this.updateReprParams(update, c);
                     }
                 }
-                return [2 /*return*/, this.plugin.dataTransaction(function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-                        return (0, tslib_1.__generator)(this, function (_a) {
+                return [2 /*return*/, this.plugin.dataTransaction(function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                        return tslib_1.__generator(this, function (_a) {
                             switch (_a.label) {
                                 case 0: return [4 /*yield*/, update.commit()];
                                 case 1:
@@ -117,10 +117,10 @@ var StructureComponentManager = /** @class */ (function (_super) {
     };
     StructureComponentManager.prototype.updateInterationProps = function () {
         var _a, _b, _c;
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var _i, _d, s, interactionParams, oldParams, pd, params;
             var _this = this;
-            return (0, tslib_1.__generator)(this, function (_e) {
+            return tslib_1.__generator(this, function (_e) {
                 switch (_e.label) {
                     case 0:
                         _i = 0, _d = this.currentStructures;
@@ -161,9 +161,9 @@ var StructureComponentManager = /** @class */ (function (_super) {
     };
     StructureComponentManager.prototype.applyPreset = function (structures, provider, params) {
         var _this = this;
-        return this.plugin.dataTransaction(function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+        return this.plugin.dataTransaction(function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
             var _i, structures_1, s, preset;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         _i = 0, structures_1 = structures;
@@ -251,9 +251,9 @@ var StructureComponentManager = /** @class */ (function (_super) {
     };
     StructureComponentManager.prototype.modifyByCurrentSelection = function (components, action) {
         var _this = this;
-        return this.plugin.runTask(mol_task_1.Task.create('Modify Component', function (taskCtx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+        return this.plugin.runTask(mol_task_1.Task.create('Modify Component', function (taskCtx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
             var b, _i, components_2, c, selection;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         b = this.dataState.build();
@@ -385,9 +385,9 @@ var StructureComponentManager = /** @class */ (function (_super) {
         var _a = this.state.options, showHydrogens = _a.showHydrogens, quality = _a.visualQuality, ignoreLight = _a.ignoreLight, material = _a.materialStyle, clip = _a.clipObjects;
         var ignoreHydrogens = !showHydrogens;
         var typeParams = { ignoreHydrogens: ignoreHydrogens, quality: quality, ignoreLight: ignoreLight, material: material, clip: clip };
-        return this.plugin.dataTransaction(function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+        return this.plugin.dataTransaction(function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
             var _i, components_9, component;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         _i = 0, components_9 = components;
@@ -414,10 +414,10 @@ var StructureComponentManager = /** @class */ (function (_super) {
         var _this = this;
         if (structure.components.length === 0)
             return;
-        return this.plugin.runTask(mol_task_1.Task.create('Find Component', function (taskCtx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+        return this.plugin.runTask(mol_task_1.Task.create('Find Component', function (taskCtx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
             var data, sel, _a, _b, _i, _c, c, comp;
             var _d, _e;
-            return (0, tslib_1.__generator)(this, function (_f) {
+            return tslib_1.__generator(this, function (_f) {
                 switch (_f.label) {
                     case 0:
                         data = (_d = structure.cell.obj) === null || _d === void 0 ? void 0 : _d.data;
@@ -441,12 +441,12 @@ var StructureComponentManager = /** @class */ (function (_super) {
         }); }));
     };
     StructureComponentManager.prototype.add = function (params, structures) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var _this = this;
-            return (0, tslib_1.__generator)(this, function (_a) {
-                return [2 /*return*/, this.plugin.dataTransaction(function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+            return tslib_1.__generator(this, function (_a) {
+                return [2 /*return*/, this.plugin.dataTransaction(function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
                         var xs, _a, showHydrogens, quality, ignoreLight, material, clip, ignoreHydrogens, typeParams, componentKey, _i, xs_1, s, component;
-                        return (0, tslib_1.__generator)(this, function (_b) {
+                        return tslib_1.__generator(this, function (_b) {
                             switch (_b.label) {
                                 case 0:
                                     xs = structures || this.currentStructures;
@@ -496,19 +496,19 @@ var StructureComponentManager = /** @class */ (function (_super) {
         });
     };
     StructureComponentManager.prototype.applyTheme = function (params, structures) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var _this = this;
-            return (0, tslib_1.__generator)(this, function (_a) {
-                return [2 /*return*/, this.plugin.dataTransaction(function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+            return tslib_1.__generator(this, function (_a) {
+                return [2 /*return*/, this.plugin.dataTransaction(function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
                         var xs, getLoci, _i, xs_2, s, p, p, p, p;
                         var _this = this;
-                        return (0, tslib_1.__generator)(this, function (_a) {
+                        return tslib_1.__generator(this, function (_a) {
                             switch (_a.label) {
                                 case 0:
                                     xs = structures || this.currentStructures;
                                     if (xs.length === 0)
                                         return [2 /*return*/];
-                                    getLoci = function (s) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () { var _a, _b; return (0, tslib_1.__generator)(this, function (_c) {
+                                    getLoci = function (s) { return tslib_1.__awaiter(_this, void 0, void 0, function () { var _a, _b; return tslib_1.__generator(this, function (_c) {
                                         switch (_c.label) {
                                             case 0:
                                                 _b = (_a = structure_1.StructureSelection).toLociWithSourceUnits;
@@ -637,7 +637,7 @@ exports.StructureComponentManager = StructureComponentManager;
     };
     function getAddParams(plugin, params) {
         var options = plugin.query.structure.registry.options;
-        params = (0, tslib_1.__assign)({ pivot: plugin.managers.structure.component.pivotStructure, allowNone: true, hideSelection: false, checkExisting: false }, params);
+        params = tslib_1.__assign({ pivot: plugin.managers.structure.component.pivotStructure, allowNone: true, hideSelection: false, checkExisting: false }, params);
         return {
             selection: param_definition_1.ParamDefinition.Select(options[1][0], options, { isHidden: params === null || params === void 0 ? void 0 : params.hideSelection }),
             representation: getRepresentationTypesSelect(plugin, params === null || params === void 0 ? void 0 : params.pivot, (params === null || params === void 0 ? void 0 : params.allowNone) ? [['none', '< Create Later >']] : []),
@@ -680,7 +680,7 @@ exports.StructureComponentManager = StructureComponentManager;
     }
     StructureComponentManager.getRepresentationTypes = getRepresentationTypes;
     function getRepresentationTypesSelect(plugin, pivot, custom, label) {
-        var types = (0, tslib_1.__spreadArray)((0, tslib_1.__spreadArray)([], custom, true), getRepresentationTypes(plugin, pivot), true);
+        var types = tslib_1.__spreadArray(tslib_1.__spreadArray([], custom, true), getRepresentationTypes(plugin, pivot), true);
         return param_definition_1.ParamDefinition.Select(types[0][0], types, { label: label });
     }
 })(StructureComponentManager || (StructureComponentManager = {}));

package/lib/commonjs/mol-plugin-state/manager/structure/focus.js

@@ -19,7 +19,7 @@ var linear_algebra_1 = require("../../../mol-math/linear-algebra");
 var geometry_1 = require("../../../mol-math/geometry");
 var HISTORY_CAPACITY = 8;
 var StructureFocusManager = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(StructureFocusManager, _super);
+    tslib_1.__extends(StructureFocusManager, _super);
     function StructureFocusManager(plugin) {
         var _this = _super.call(this, { history: [] }) || this;
         _this.plugin = plugin;
@@ -65,7 +65,7 @@ var StructureFocusManager = /** @class */ (function (_super) {
                 var structure = obj.data;
                 if (current && current.loci.structure === oldData) {
                     var loci = structure_1.StructureElement.Loci.remap(current.loci, structure);
-                    _this.state.current = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, current), { loci: loci });
+                    _this.state.current = tslib_1.__assign(tslib_1.__assign({}, current), { loci: loci });
                     _this.behaviors.current.next(_this.state.current);
                     loci_1.Loci.getBoundingSphere(loci, sphere);
                     var camera = (_b = _this.plugin.canvas3d) === null || _b === void 0 ? void 0 : _b.camera;

package/lib/commonjs/mol-plugin-state/manager/structure/hierarchy-state.js

@@ -50,7 +50,7 @@ function StructureVolumeStreamingRef(cell, structure) {
 function componentKey(cell) {
     if (!cell.transform.tags)
         return cell.transform.ref;
-    return (0, tslib_1.__spreadArray)([], cell.transform.tags, true).sort().join();
+    return tslib_1.__spreadArray([], cell.transform.tags, true).sort().join();
 }
 function StructureComponentRef(cell, structure) {
     return { kind: 'structure-component', cell: cell, version: cell.transform.version, structure: structure, key: componentKey(cell), representations: [] };

package/lib/commonjs/mol-plugin-state/manager/structure/hierarchy.js

@@ -15,7 +15,7 @@ var set_1 = require("../../../mol-util/set");
 var component_1 = require("../../component");
 var hierarchy_state_1 = require("./hierarchy-state");
 var StructureHierarchyManager = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(StructureHierarchyManager, _super);
+    tslib_1.__extends(StructureHierarchyManager, _super);
     function StructureHierarchyManager(plugin) {
         var _this = _super.call(this) || this;
         _this.plugin = plugin;
@@ -135,7 +135,7 @@ var StructureHierarchyManager = /** @class */ (function (_super) {
         if (this.state.syncedTree === this.dataState.tree) {
             if (notify && !this.state.notified) {
                 this.state.notified = true;
-                this.behaviors.selection.next((0, tslib_1.__assign)({ hierarchy: this.state.hierarchy }, this.state.selection));
+                this.behaviors.selection.next(tslib_1.__assign({ hierarchy: this.state.hierarchy }, this.state.selection));
             }
             return;
         }
@@ -215,9 +215,9 @@ var StructureHierarchyManager = /** @class */ (function (_super) {
     };
     StructureHierarchyManager.prototype.applyPreset = function (trajectories, provider, params) {
         var _this = this;
-        return this.plugin.dataTransaction(function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+        return this.plugin.dataTransaction(function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
             var _i, trajectories_1, t;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         _i = 0, trajectories_1 = trajectories;
@@ -243,13 +243,13 @@ var StructureHierarchyManager = /** @class */ (function (_super) {
         }); });
     };
     StructureHierarchyManager.prototype.updateStructure = function (s, params) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var _this = this;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
-                    case 0: return [4 /*yield*/, this.plugin.dataTransaction(function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+                    case 0: return [4 /*yield*/, this.plugin.dataTransaction(function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
                             var root, children;
-                            return (0, tslib_1.__generator)(this, function (_a) {
+                            return tslib_1.__generator(this, function (_a) {
                                 switch (_a.label) {
                                     case 0:
                                         root = mol_state_1.StateTree.getDecoratorRoot(this.dataState.tree, s.cell.transform.ref);