molstar 3.3.1 → 3.6.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1114) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -194
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/build/viewer/molstar.js.LICENSE.txt +12 -14
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/index.js +1 -1
  9. package/lib/apps/docking-viewer/viewport.js +1 -1
  10. package/lib/apps/viewer/app.d.ts +7 -6
  11. package/lib/apps/viewer/app.js +3 -1
  12. package/lib/apps/viewer/embedded.html +43 -43
  13. package/lib/apps/viewer/index.html +106 -106
  14. package/lib/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  15. package/lib/cli/chem-comp-dict/create-saccharides.js +67 -0
  16. package/lib/cli/chem-comp-dict/util.d.ts +20 -20
  17. package/lib/cli/cif2bcif/converter.js +1 -1
  18. package/lib/cli/cif2bcif/index.js +4 -4
  19. package/lib/cli/cifschema/util/cif-dic.d.ts +1 -1
  20. package/lib/cli/cifschema/util/cif-dic.js +7 -5
  21. package/lib/cli/cifschema/util/generate.d.ts +1 -1
  22. package/lib/cli/cifschema/util/generate.js +12 -3
  23. package/lib/cli/cifschema/util/schema.d.ts +3 -3
  24. package/lib/cli/cifschema/util/schema.js +1 -1
  25. package/lib/commonjs/apps/docking-viewer/index.js +14 -14
  26. package/lib/commonjs/apps/docking-viewer/viewport.js +33 -33
  27. package/lib/commonjs/apps/viewer/app.d.ts +7 -6
  28. package/lib/commonjs/apps/viewer/app.js +26 -24
  29. package/lib/commonjs/apps/viewer/index.js +1 -1
  30. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +6 -6
  31. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  32. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +69 -0
  33. package/lib/commonjs/cli/chem-comp-dict/create-table.js +8 -8
  34. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +20 -20
  35. package/lib/commonjs/cli/chem-comp-dict/util.js +17 -17
  36. package/lib/commonjs/cli/cif2bcif/converter.js +9 -9
  37. package/lib/commonjs/cli/cif2bcif/index.js +12 -12
  38. package/lib/commonjs/cli/cifschema/index.js +27 -27
  39. package/lib/commonjs/cli/cifschema/util/cif-dic.d.ts +1 -1
  40. package/lib/commonjs/cli/cifschema/util/cif-dic.js +8 -6
  41. package/lib/commonjs/cli/cifschema/util/generate.d.ts +1 -1
  42. package/lib/commonjs/cli/cifschema/util/generate.js +12 -3
  43. package/lib/commonjs/cli/cifschema/util/schema.d.ts +3 -3
  44. package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
  45. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  46. package/lib/commonjs/cli/state-docs/index.js +2 -2
  47. package/lib/commonjs/cli/structure-info/helpers.js +11 -11
  48. package/lib/commonjs/cli/structure-info/model.js +15 -15
  49. package/lib/commonjs/cli/structure-info/volume.js +9 -9
  50. package/lib/commonjs/examples/alpha-orbitals/controls.js +3 -3
  51. package/lib/commonjs/examples/alpha-orbitals/index.js +12 -12
  52. package/lib/commonjs/examples/basic-wrapper/controls.js +2 -2
  53. package/lib/commonjs/examples/basic-wrapper/index.js +23 -23
  54. package/lib/commonjs/examples/basic-wrapper/superposition.js +8 -8
  55. package/lib/commonjs/examples/domain-annotation-server/mapping.js +3 -3
  56. package/lib/commonjs/examples/domain-annotation-server/server.js +6 -6
  57. package/lib/commonjs/examples/domain-annotation-server/test.js +3 -3
  58. package/lib/commonjs/examples/lighting/index.js +7 -7
  59. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +2 -2
  60. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +4 -4
  61. package/lib/commonjs/examples/proteopedia-wrapper/index.js +27 -27
  62. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +2 -2
  63. package/lib/commonjs/examples/task.js +15 -15
  64. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +2 -2
  65. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +1 -1
  66. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -2
  67. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -2
  68. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -2
  69. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +13 -13
  70. package/lib/commonjs/extensions/anvil/algorithm.js +13 -13
  71. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  72. package/lib/commonjs/extensions/anvil/behavior.js +14 -14
  73. package/lib/commonjs/extensions/anvil/prop.js +7 -7
  74. package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
  75. package/lib/commonjs/extensions/anvil/representation.js +5 -5
  76. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  77. package/lib/commonjs/extensions/cellpack/model.js +26 -24
  78. package/lib/commonjs/extensions/cellpack/preset.js +6 -6
  79. package/lib/commonjs/extensions/cellpack/property.js +3 -3
  80. package/lib/commonjs/extensions/cellpack/representation.d.ts +1 -0
  81. package/lib/commonjs/extensions/cellpack/representation.js +2 -2
  82. package/lib/commonjs/extensions/cellpack/state.js +13 -13
  83. package/lib/commonjs/extensions/cellpack/util.js +14 -14
  84. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
  85. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.d.ts +397 -2
  86. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +223 -131
  87. package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js +6 -8
  88. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  89. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +2 -2
  90. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +19 -20
  91. package/lib/commonjs/extensions/g3d/data.js +6 -6
  92. package/lib/commonjs/extensions/g3d/format.js +14 -14
  93. package/lib/commonjs/extensions/g3d/model.js +4 -4
  94. package/lib/commonjs/extensions/geo-export/controls.js +3 -3
  95. package/lib/commonjs/extensions/geo-export/glb-exporter.js +9 -9
  96. package/lib/commonjs/extensions/geo-export/index.js +1 -1
  97. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +12 -12
  98. package/lib/commonjs/extensions/geo-export/obj-exporter.js +7 -7
  99. package/lib/commonjs/extensions/geo-export/stl-exporter.js +7 -7
  100. package/lib/commonjs/extensions/geo-export/ui.js +7 -7
  101. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +9 -9
  102. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +9 -9
  103. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +4 -4
  104. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +4 -4
  105. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +5 -5
  106. package/lib/commonjs/extensions/model-export/export.js +4 -4
  107. package/lib/commonjs/extensions/model-export/index.js +1 -1
  108. package/lib/commonjs/extensions/model-export/ui.js +5 -5
  109. package/lib/commonjs/extensions/mp4-export/controls.js +5 -5
  110. package/lib/commonjs/extensions/mp4-export/encoder.js +4 -4
  111. package/lib/commonjs/extensions/mp4-export/index.js +1 -1
  112. package/lib/commonjs/extensions/mp4-export/ui.js +5 -5
  113. package/lib/commonjs/extensions/pdbe/preferred-assembly.js +2 -2
  114. package/lib/commonjs/extensions/pdbe/struct-ref-domain.js +2 -2
  115. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
  116. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +8 -8
  117. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -0
  118. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +17 -17
  119. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +2 -2
  120. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +9 -9
  121. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -0
  122. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +6 -6
  123. package/lib/commonjs/extensions/rcsb/assembly-symmetry/ui.js +9 -9
  124. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +17 -17
  125. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +15 -15
  126. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  127. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +3 -3
  128. package/lib/commonjs/extensions/zenodo/index.d.ts +7 -0
  129. package/lib/commonjs/extensions/zenodo/index.js +35 -0
  130. package/lib/commonjs/extensions/zenodo/ui.d.ts +61 -0
  131. package/lib/commonjs/extensions/zenodo/ui.js +306 -0
  132. package/lib/commonjs/mol-canvas3d/camera/stereo.js +1 -1
  133. package/lib/commonjs/mol-canvas3d/camera/util.js +1 -1
  134. package/lib/commonjs/mol-canvas3d/camera.js +2 -1
  135. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -0
  136. package/lib/commonjs/mol-canvas3d/canvas3d.js +14 -14
  137. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  138. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +1 -1
  139. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -0
  140. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +5 -5
  141. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  142. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +5 -5
  143. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  144. package/lib/commonjs/mol-canvas3d/helper/helper.js +1 -1
  145. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +2 -2
  146. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
  147. package/lib/commonjs/mol-canvas3d/passes/fxaa.js +3 -3
  148. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
  149. package/lib/commonjs/mol-canvas3d/passes/image.js +1 -1
  150. package/lib/commonjs/mol-canvas3d/passes/marking.js +6 -6
  151. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +3 -3
  152. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +12 -12
  153. package/lib/commonjs/mol-canvas3d/passes/smaa.js +9 -9
  154. package/lib/commonjs/mol-canvas3d/passes/wboit.js +3 -3
  155. package/lib/commonjs/mol-canvas3d/util.js +2 -2
  156. package/lib/commonjs/mol-data/db/column.d.ts +10 -3
  157. package/lib/commonjs/mol-data/db/column.js +40 -18
  158. package/lib/commonjs/mol-data/db/table.js +1 -1
  159. package/lib/commonjs/mol-data/db.js +1 -1
  160. package/lib/commonjs/mol-data/generic.js +3 -3
  161. package/lib/commonjs/mol-data/index.js +4 -4
  162. package/lib/commonjs/mol-data/int/interval.js +1 -1
  163. package/lib/commonjs/mol-data/int/ordered-set.js +1 -1
  164. package/lib/commonjs/mol-data/int/segmentation.js +1 -1
  165. package/lib/commonjs/mol-data/int/sorted-array.js +1 -1
  166. package/lib/commonjs/mol-data/util.js +7 -7
  167. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +4 -2
  168. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +4 -4
  169. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -3
  170. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +1 -1
  171. package/lib/commonjs/mol-geo/geometry/image/image.js +3 -3
  172. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  173. package/lib/commonjs/mol-geo/geometry/lines/lines.js +3 -3
  174. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +1 -1
  175. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +5 -3
  176. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
  177. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +4 -4
  178. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  179. package/lib/commonjs/mol-geo/geometry/points/points.js +3 -3
  180. package/lib/commonjs/mol-geo/geometry/size-data.js +1 -1
  181. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -1
  182. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +4 -4
  183. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
  184. package/lib/commonjs/mol-geo/geometry/text/text-builder.js +3 -2
  185. package/lib/commonjs/mol-geo/geometry/text/text.js +3 -3
  186. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +1 -1
  187. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +10 -8
  188. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +2 -1
  189. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +4 -4
  190. package/lib/commonjs/mol-geo/primitive/circle.js +1 -1
  191. package/lib/commonjs/mol-geo/primitive/cylinder.js +1 -1
  192. package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
  193. package/lib/commonjs/mol-geo/primitive/prism.js +1 -1
  194. package/lib/commonjs/mol-geo/primitive/star.js +1 -1
  195. package/lib/commonjs/mol-geo/primitive/torus.js +1 -1
  196. package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +9 -9
  197. package/lib/commonjs/mol-gl/compute/grid3d.js +5 -5
  198. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +3 -3
  199. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +3 -3
  200. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +3 -3
  201. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  202. package/lib/commonjs/mol-gl/compute/util.js +3 -3
  203. package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
  204. package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
  205. package/lib/commonjs/mol-gl/renderable/image.js +3 -3
  206. package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
  207. package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
  208. package/lib/commonjs/mol-gl/renderable/points.js +3 -3
  209. package/lib/commonjs/mol-gl/renderable/schema.js +1 -1
  210. package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
  211. package/lib/commonjs/mol-gl/renderable/text.js +3 -3
  212. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
  213. package/lib/commonjs/mol-gl/renderable/util.js +1 -1
  214. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +2 -2
  215. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +2 -2
  216. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  217. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  218. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
  219. package/lib/commonjs/mol-gl/shader/image.frag.js +2 -2
  220. package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
  221. package/lib/commonjs/mol-gl/shader/lines.frag.js +2 -2
  222. package/lib/commonjs/mol-gl/shader/points.frag.d.ts +2 -2
  223. package/lib/commonjs/mol-gl/shader/points.frag.js +2 -2
  224. package/lib/commonjs/mol-gl/shader/text.frag.d.ts +2 -2
  225. package/lib/commonjs/mol-gl/shader/text.frag.js +2 -2
  226. package/lib/commonjs/mol-gl/shader-code.js +2 -1
  227. package/lib/commonjs/mol-gl/webgl/buffer.d.ts +2 -2
  228. package/lib/commonjs/mol-gl/webgl/buffer.js +16 -17
  229. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  230. package/lib/commonjs/mol-gl/webgl/context.js +5 -5
  231. package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
  232. package/lib/commonjs/mol-gl/webgl/program.js +10 -4
  233. package/lib/commonjs/mol-gl/webgl/render-item.js +1 -1
  234. package/lib/commonjs/mol-gl/webgl/resources.js +2 -2
  235. package/lib/commonjs/mol-io/common/binary-cif/classifier.js +7 -6
  236. package/lib/commonjs/mol-io/common/binary-cif/decoder.js +4 -3
  237. package/lib/commonjs/mol-io/common/binary-cif.js +3 -3
  238. package/lib/commonjs/mol-io/common/io-buffer.d.ts +206 -0
  239. package/lib/commonjs/mol-io/common/io-buffer.js +408 -0
  240. package/lib/commonjs/mol-io/common/netcdf/reader.d.ts +78 -0
  241. package/lib/commonjs/mol-io/common/netcdf/reader.js +459 -0
  242. package/lib/commonjs/mol-io/common/typed-array.js +2 -2
  243. package/lib/commonjs/mol-io/reader/ccp4/parser.js +8 -8
  244. package/lib/commonjs/mol-io/reader/cif/binary/parser.js +3 -3
  245. package/lib/commonjs/mol-io/reader/cif/data-model.js +1 -1
  246. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +8 -8
  247. package/lib/commonjs/mol-io/reader/cif/schema/bird.js +12 -11
  248. package/lib/commonjs/mol-io/reader/cif/schema/ccd-extras.d.ts +1 -1
  249. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +12 -12
  250. package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +13 -12
  251. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +5 -5
  252. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.js +4 -4
  253. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +31 -27
  254. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +44 -39
  255. package/lib/commonjs/mol-io/reader/cif/schema.d.ts +1 -1
  256. package/lib/commonjs/mol-io/reader/cif/schema.js +24 -4
  257. package/lib/commonjs/mol-io/reader/cif/text/parser.js +7 -7
  258. package/lib/commonjs/mol-io/reader/cif.js +1 -1
  259. package/lib/commonjs/mol-io/reader/common/text/tokenizer.js +4 -4
  260. package/lib/commonjs/mol-io/reader/csv/data-model.js +1 -1
  261. package/lib/commonjs/mol-io/reader/csv/parser.js +7 -7
  262. package/lib/commonjs/mol-io/reader/cube/parser.js +2 -2
  263. package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
  264. package/lib/commonjs/mol-io/reader/dsn6/parser.js +8 -8
  265. package/lib/commonjs/mol-io/reader/dx/parser.js +4 -4
  266. package/lib/commonjs/mol-io/reader/gro/parser.js +6 -6
  267. package/lib/commonjs/mol-io/reader/mol/parser.js +2 -2
  268. package/lib/commonjs/mol-io/reader/mol2/parser.js +8 -8
  269. package/lib/commonjs/mol-io/reader/nctraj/parser.d.ts +18 -0
  270. package/lib/commonjs/mol-io/reader/nctraj/parser.js +101 -0
  271. package/lib/commonjs/mol-io/reader/obj/parser.js +4 -4
  272. package/lib/commonjs/mol-io/reader/pdb/parser.js +2 -2
  273. package/lib/commonjs/mol-io/reader/ply/parser.js +4 -4
  274. package/lib/commonjs/mol-io/reader/prmtop/parser.d.ts +58 -0
  275. package/lib/commonjs/mol-io/reader/prmtop/parser.js +172 -0
  276. package/lib/commonjs/mol-io/reader/psf/parser.js +8 -8
  277. package/lib/commonjs/mol-io/reader/sdf/parser.js +2 -2
  278. package/lib/commonjs/mol-io/reader/top/parser.d.ts +37 -0
  279. package/lib/commonjs/mol-io/reader/top/parser.js +303 -0
  280. package/lib/commonjs/mol-io/reader/trr/parser.d.ts +22 -0
  281. package/lib/commonjs/mol-io/reader/trr/parser.js +146 -0
  282. package/lib/commonjs/mol-io/reader/xtc/parser.js +4 -4
  283. package/lib/commonjs/mol-io/reader/xyz/parser.js +2 -2
  284. package/lib/commonjs/mol-io/writer/cif/encoder.js +3 -2
  285. package/lib/commonjs/mol-io/writer/cif.js +1 -1
  286. package/lib/commonjs/mol-io/writer/ligand-encoder.js +1 -1
  287. package/lib/commonjs/mol-io/writer/mol/encoder.js +2 -2
  288. package/lib/commonjs/mol-io/writer/mol2/encoder.js +1 -1
  289. package/lib/commonjs/mol-math/geometry/boundary-helper.js +5 -5
  290. package/lib/commonjs/mol-math/geometry/common.d.ts +2 -1
  291. package/lib/commonjs/mol-math/geometry/common.js +1 -1
  292. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.d.ts +1 -1
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- return (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-no-webgl' }, { children: (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("p", { children: (0, jsx_runtime_1.jsx)("b", { children: "WebGL does not seem to be available." }, void 0) }, void 0), (0, jsx_runtime_1.jsx)("p", { children: "This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps." }, void 0), (0, jsx_runtime_1.jsxs)("p", { children: ["For a list of supported browsers, refer to ", (0, jsx_runtime_1.jsx)("a", (0, tslib_1.__assign)({ href: 'http://caniuse.com/#feat=webgl', target: '_blank' }, { children: "http://caniuse.com/#feat=webgl" }), void 0), "."] }, void 0)] }, void 0) }), void 0);
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+ return (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-no-webgl' }, { children: (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("p", { children: (0, jsx_runtime_1.jsx)("b", { children: "WebGL does not seem to be available." }) }), (0, jsx_runtime_1.jsx)("p", { children: "This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps." }), (0, jsx_runtime_1.jsxs)("p", { children: ["For a list of supported browsers, refer to ", (0, jsx_runtime_1.jsx)("a", tslib_1.__assign({ href: 'http://caniuse.com/#feat=webgl', target: '_blank' }, { children: "http://caniuse.com/#feat=webgl" })), "."] })] }) }));
48
48
  };
49
49
  ViewportCanvas.prototype.render = function () {
50
50
  if (this.state.noWebGl)
51
51
  return this.renderMissing();
52
52
  var Logo = this.props.logo;
53
- return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: this.props.parentClassName || 'msp-viewport', style: this.props.parentStyle }, { children: [(0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: this.props.hostClassName || 'msp-viewport-host3d', style: this.props.hostStyle, ref: this.container }, { children: (0, jsx_runtime_1.jsx)("canvas", { ref: this.canvas }, void 0) }), void 0), (this.state.showLogo && Logo) && (0, jsx_runtime_1.jsx)(Logo, {}, void 0)] }), void 0);
53
+ return (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: this.props.parentClassName || 'msp-viewport', style: this.props.parentStyle }, { children: [(0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: this.props.hostClassName || 'msp-viewport-host3d', style: this.props.hostStyle, ref: this.container }, { children: (0, jsx_runtime_1.jsx)("canvas", { ref: this.canvas }) })), (this.state.showLogo && Logo) && (0, jsx_runtime_1.jsx)(Logo, {})] }));
54
54
  };
55
55
  return ViewportCanvas;
56
56
  }(base_1.PluginUIComponent));
@@ -8,7 +8,7 @@ var jsx_runtime_1 = require("react/jsx-runtime");
8
8
  *
9
9
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
10
10
  */
11
- var React = (0, tslib_1.__importStar)(require("react"));
11
+ var React = tslib_1.__importStar(require("react"));
12
12
  var binding_1 = require("../../mol-util/binding");
13
13
  var base_1 = require("../base");
14
14
  var mol_state_1 = require("../../mol-state");
@@ -20,7 +20,7 @@ function getBindingsList(bindings) {
20
20
  return Object.keys(bindings).map(function (k) { return [k, bindings[k]]; });
21
21
  }
22
22
  var BindingsHelp = /** @class */ (function (_super) {
23
- (0, tslib_1.__extends)(BindingsHelp, _super);
23
+ tslib_1.__extends(BindingsHelp, _super);
24
24
  function BindingsHelp() {
25
25
  return _super !== null && _super.apply(this, arguments) || this;
26
26
  }
@@ -29,29 +29,29 @@ var BindingsHelp = /** @class */ (function (_super) {
29
29
  return (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: bindingsList.map(function (value) {
30
30
  var name = value[0], binding = value[1];
31
31
  return !binding_1.Binding.isEmpty(binding)
32
- ? (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { marginBottom: '6px' } }, { children: [(0, jsx_runtime_1.jsx)("b", { children: binding.action }, void 0), (0, jsx_runtime_1.jsx)("br", {}, void 0), (0, jsx_runtime_1.jsx)("span", { dangerouslySetInnerHTML: { __html: binding_1.Binding.format(binding, name) } }, void 0)] }), name)
32
+ ? (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ style: { marginBottom: '6px' } }, { children: [(0, jsx_runtime_1.jsx)("b", { children: binding.action }), (0, jsx_runtime_1.jsx)("br", {}), (0, jsx_runtime_1.jsx)("span", { dangerouslySetInnerHTML: { __html: binding_1.Binding.format(binding, name) } })] }), name)
33
33
  : null;
34
- }) }, void 0);
34
+ }) });
35
35
  };
36
36
  BindingsHelp.prototype.render = function () {
37
- return (0, jsx_runtime_1.jsx)(HelpText, { children: this.getBindingComponents() }, void 0);
37
+ return (0, jsx_runtime_1.jsx)(HelpText, { children: this.getBindingComponents() });
38
38
  };
39
39
  return BindingsHelp;
40
40
  }(React.PureComponent));
41
41
  exports.BindingsHelp = BindingsHelp;
42
42
  var HelpText = /** @class */ (function (_super) {
43
- (0, tslib_1.__extends)(HelpText, _super);
43
+ tslib_1.__extends(HelpText, _super);
44
44
  function HelpText() {
45
45
  return _super !== null && _super.apply(this, arguments) || this;
46
46
  }
47
47
  HelpText.prototype.render = function () {
48
- return (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-help-text' }, { children: (0, jsx_runtime_1.jsx)("div", { children: this.props.children }, void 0) }), void 0);
48
+ return (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-help-text' }, { children: (0, jsx_runtime_1.jsx)("div", { children: this.props.children }) }));
49
49
  };
50
50
  return HelpText;
51
51
  }(React.PureComponent));
52
52
  exports.HelpText = HelpText;
53
53
  var HelpGroup = /** @class */ (function (_super) {
54
- (0, tslib_1.__extends)(HelpGroup, _super);
54
+ tslib_1.__extends(HelpGroup, _super);
55
55
  function HelpGroup() {
56
56
  var _this = _super !== null && _super.apply(this, arguments) || this;
57
57
  _this.state = {
@@ -62,16 +62,16 @@ var HelpGroup = /** @class */ (function (_super) {
62
62
  return _this;
63
63
  }
64
64
  HelpGroup.prototype.render = function () {
65
- return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-control-group-wrapper' }, { children: [(0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-group-header' }, { children: (0, jsx_runtime_1.jsxs)(common_1.Button, (0, tslib_1.__assign)({ onClick: this.toggleExpanded }, { children: [(0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: this.state.isExpanded ? icons_1.ArrowDropDownSvg : icons_1.ArrowRightSvg }, void 0), this.props.header] }), void 0) }), void 0), this.state.isExpanded && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset', style: { display: this.state.isExpanded ? 'block' : 'none' } }, { children: this.props.children }), void 0)] }), void 0);
65
+ return (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-control-group-wrapper' }, { children: [(0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-group-header' }, { children: (0, jsx_runtime_1.jsxs)(common_1.Button, tslib_1.__assign({ onClick: this.toggleExpanded }, { children: [(0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: this.state.isExpanded ? icons_1.ArrowDropDownSvg : icons_1.ArrowRightSvg }), this.props.header] })) })), this.state.isExpanded && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-offset', style: { display: this.state.isExpanded ? 'block' : 'none' } }, { children: this.props.children }))] }));
66
66
  };
67
67
  return HelpGroup;
68
68
  }(React.PureComponent));
69
69
  exports.HelpGroup = HelpGroup;
70
70
  function HelpSection(props) {
71
- return (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-simple-help-section' }, { children: props.header }), void 0);
71
+ return (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-simple-help-section' }, { children: props.header }));
72
72
  }
73
73
  var ViewportHelpContent = /** @class */ (function (_super) {
74
- (0, tslib_1.__extends)(ViewportHelpContent, _super);
74
+ tslib_1.__extends(ViewportHelpContent, _super);
75
75
  function ViewportHelpContent() {
76
76
  return _super !== null && _super.apply(this, arguments) || this;
77
77
  }
@@ -86,13 +86,13 @@ var ViewportHelpContent = /** @class */ (function (_super) {
86
86
  if (bindings)
87
87
  Object.assign(interactionBindings, bindings);
88
88
  });
89
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(!this.props.selectOnly && this.plugin.canvas3d) && (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Moving in 3D' }, { children: (0, jsx_runtime_1.jsx)(BindingsHelp, { bindings: this.plugin.canvas3d.props.trackball.bindings }, void 0) }), 'trackball'), (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Mouse Controls' }, { children: (0, jsx_runtime_1.jsx)(BindingsHelp, { bindings: interactionBindings }, void 0) }), 'interactions')] }, void 0);
89
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(!this.props.selectOnly && this.plugin.canvas3d) && (0, jsx_runtime_1.jsx)(HelpGroup, tslib_1.__assign({ header: 'Moving in 3D' }, { children: (0, jsx_runtime_1.jsx)(BindingsHelp, { bindings: this.plugin.canvas3d.props.trackball.bindings }) }), 'trackball'), (0, jsx_runtime_1.jsx)(HelpGroup, tslib_1.__assign({ header: 'Mouse Controls' }, { children: (0, jsx_runtime_1.jsx)(BindingsHelp, { bindings: interactionBindings }) }), 'interactions')] });
90
90
  };
91
91
  return ViewportHelpContent;
92
92
  }(base_1.PluginUIComponent));
93
93
  exports.ViewportHelpContent = ViewportHelpContent;
94
94
  var HelpContent = /** @class */ (function (_super) {
95
- (0, tslib_1.__extends)(HelpContent, _super);
95
+ tslib_1.__extends(HelpContent, _super);
96
96
  function HelpContent() {
97
97
  return _super !== null && _super.apply(this, arguments) || this;
98
98
  }
@@ -115,7 +115,7 @@ var HelpContent = /** @class */ (function (_super) {
115
115
  var selectToggleTriggers = this.getTriggerFor(representation_1.SelectLoci, 'clickSelectToggle');
116
116
  var focusTriggers = this.getTriggerFor(representation_2.FocusLoci, 'clickFocus');
117
117
  // TODO: interactive help, for example for density
118
- return (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(HelpSection, { header: 'Interface Controls' }, void 0), (0, jsx_runtime_1.jsxs)(HelpGroup, (0, tslib_1.__assign)({ header: 'Inline Help' }, { children: [(0, jsx_runtime_1.jsx)(HelpText, { children: "Many user interface elements show a little questionmark icon when hovered over. Clicking the icon toggles the display of an inline help text." }, void 0), (0, jsx_runtime_1.jsx)(HelpText, { children: "Tooltips may provide additional information on a user interface element and are shown when hovering over it with the mouse." }, void 0)] }), void 0), (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Selections' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: ["The viewer allows changing colors and representations for selections of atoms, residues or chains. Selections can be created by", (0, jsx_runtime_1.jsxs)("ul", (0, tslib_1.__assign)({ style: { paddingLeft: '20px' } }, { children: [(0, jsx_runtime_1.jsxs)("li", { children: ["picking elements on the 3D canvas or the sequence view using the mouse, e.g. toggle selection using ", selectToggleTriggers, " (for more see help section on ", (0, jsx_runtime_1.jsx)("i", { children: "Mouse Controls" }, void 0), ")"] }, void 0), (0, jsx_runtime_1.jsxs)("li", { children: ["using the ", (0, jsx_runtime_1.jsx)("i", { children: "Add" }, void 0), ", ", (0, jsx_runtime_1.jsx)("i", { children: "Remove" }, void 0), " and ", (0, jsx_runtime_1.jsx)("i", { children: "Only" }, void 0), " dropdown buttons in the ", (0, jsx_runtime_1.jsx)("i", { children: "Manage Selection" }, void 0), " panel which allow modifing the current selection by predefined sets"] }, void 0)] }), void 0)] }, void 0) }), void 0), (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Coloring' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: ["There are two ways to color structures. Every representation (e.g. cartoon or spacefill) has a color theme which can be changed using the dropdown for each representation in the ", (0, jsx_runtime_1.jsx)("i", { children: "Structure Settings" }, void 0), " panel. Additionally any selection atoms, residues or chains can by given a custom color. For that, first select the parts of the structure to be colored (see help section on ", (0, jsx_runtime_1.jsx)("i", { children: "Selections" }, void 0), ") and, second, choose a color from the color dropdown botton in the ", (0, jsx_runtime_1.jsx)("i", { children: "Selection" }, void 0), " row of the ", (0, jsx_runtime_1.jsx)("i", { children: "Change Representation" }, void 0), " panel. The theme color can be seen as a base color that is overpainted by the custom color. Custom colors can be removed for a selection with the 'Clear' option in the color dropdown."] }, void 0) }), void 0), (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Representations' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: ["Structures can be shown with many different representations (e.g. cartoon or spacefill). The ", (0, jsx_runtime_1.jsx)("i", { children: "Change Representation" }, void 0), " panel offers a collection of predefined styles which can be applied using the ", (0, jsx_runtime_1.jsx)("i", { children: "Preset" }, void 0), " dropdown button. Additionally any selection atoms, residues or chains can by shown with a custom representation. For that, first select the parts of the structure to be mofified (see help section on ", (0, jsx_runtime_1.jsx)("i", { children: "Selections" }, void 0), ") and, second, choose a representation to hide or show from the ", (0, jsx_runtime_1.jsx)("i", { children: "Show" }, void 0), " and ", (0, jsx_runtime_1.jsx)("i", { children: "Hide" }, void 0), " dropdown bottons in the ", (0, jsx_runtime_1.jsx)("i", { children: "Selection" }, void 0), " row of the ", (0, jsx_runtime_1.jsx)("i", { children: "Change Representation" }, void 0), " panel. The ", (0, jsx_runtime_1.jsx)("i", { children: "Everything" }, void 0), " row applies the action to the whole structure instead of the current selection."] }, void 0) }), void 0), (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Surroundings' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: ["To show the surroundings of a residue or ligand, click it in the 3D scene or in the sequence widget using ", focusTriggers, "."] }, void 0) }), void 0), (0, jsx_runtime_1.jsx)(HelpSection, { header: 'How-to Guides' }, void 0), (0, jsx_runtime_1.jsx)(HelpGroup, (0, tslib_1.__assign)({ header: 'Create an Image' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: [(0, jsx_runtime_1.jsxs)("p", { children: ["Use the ", (0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.CameraSvg }, void 0), " icon in the viewport to bring up the screenshot controls."] }, void 0), (0, jsx_runtime_1.jsxs)("p", { children: ["To adjust the size of the image, use the ", (0, jsx_runtime_1.jsx)("i", { children: "Resolution" }, void 0), " dropdown."] }, void 0)] }, void 0) }), void 0), (0, jsx_runtime_1.jsx)(HelpSection, { header: 'Mouse Controls' }, void 0), (0, jsx_runtime_1.jsx)(ViewportHelpContent, {}, void 0)] }, void 0);
118
+ return (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(HelpSection, { header: 'Interface Controls' }), (0, jsx_runtime_1.jsxs)(HelpGroup, tslib_1.__assign({ header: 'Inline Help' }, { children: [(0, jsx_runtime_1.jsx)(HelpText, { children: "Many user interface elements show a little questionmark icon when hovered over. Clicking the icon toggles the display of an inline help text." }), (0, jsx_runtime_1.jsx)(HelpText, { children: "Tooltips may provide additional information on a user interface element and are shown when hovering over it with the mouse." })] })), (0, jsx_runtime_1.jsx)(HelpGroup, tslib_1.__assign({ header: 'Selections' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: ["The viewer allows changing colors and representations for selections of atoms, residues or chains. Selections can be created by", (0, jsx_runtime_1.jsxs)("ul", tslib_1.__assign({ style: { paddingLeft: '20px' } }, { children: [(0, jsx_runtime_1.jsxs)("li", { children: ["picking elements on the 3D canvas or the sequence view using the mouse, e.g. toggle selection using ", selectToggleTriggers, " (for more see help section on ", (0, jsx_runtime_1.jsx)("i", { children: "Mouse Controls" }), ")"] }), (0, jsx_runtime_1.jsxs)("li", { children: ["using the ", (0, jsx_runtime_1.jsx)("i", { children: "Add" }), ", ", (0, jsx_runtime_1.jsx)("i", { children: "Remove" }), " and ", (0, jsx_runtime_1.jsx)("i", { children: "Only" }), " dropdown buttons in the ", (0, jsx_runtime_1.jsx)("i", { children: "Manage Selection" }), " panel which allow modifing the current selection by predefined sets"] })] }))] }) })), (0, jsx_runtime_1.jsx)(HelpGroup, tslib_1.__assign({ header: 'Coloring' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: ["There are two ways to color structures. Every representation (e.g. cartoon or spacefill) has a color theme which can be changed using the dropdown for each representation in the ", (0, jsx_runtime_1.jsx)("i", { children: "Structure Settings" }), " panel. Additionally any selection atoms, residues or chains can by given a custom color. For that, first select the parts of the structure to be colored (see help section on ", (0, jsx_runtime_1.jsx)("i", { children: "Selections" }), ") and, second, choose a color from the color dropdown botton in the ", (0, jsx_runtime_1.jsx)("i", { children: "Selection" }), " row of the ", (0, jsx_runtime_1.jsx)("i", { children: "Change Representation" }), " panel. The theme color can be seen as a base color that is overpainted by the custom color. Custom colors can be removed for a selection with the 'Clear' option in the color dropdown."] }) })), (0, jsx_runtime_1.jsx)(HelpGroup, tslib_1.__assign({ header: 'Representations' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: ["Structures can be shown with many different representations (e.g. cartoon or spacefill). The ", (0, jsx_runtime_1.jsx)("i", { children: "Change Representation" }), " panel offers a collection of predefined styles which can be applied using the ", (0, jsx_runtime_1.jsx)("i", { children: "Preset" }), " dropdown button. Additionally any selection atoms, residues or chains can by shown with a custom representation. For that, first select the parts of the structure to be mofified (see help section on ", (0, jsx_runtime_1.jsx)("i", { children: "Selections" }), ") and, second, choose a representation to hide or show from the ", (0, jsx_runtime_1.jsx)("i", { children: "Show" }), " and ", (0, jsx_runtime_1.jsx)("i", { children: "Hide" }), " dropdown bottons in the ", (0, jsx_runtime_1.jsx)("i", { children: "Selection" }), " row of the ", (0, jsx_runtime_1.jsx)("i", { children: "Change Representation" }), " panel. The ", (0, jsx_runtime_1.jsx)("i", { children: "Everything" }), " row applies the action to the whole structure instead of the current selection."] }) })), (0, jsx_runtime_1.jsx)(HelpGroup, tslib_1.__assign({ header: 'Surroundings' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: ["To show the surroundings of a residue or ligand, click it in the 3D scene or in the sequence widget using ", focusTriggers, "."] }) })), (0, jsx_runtime_1.jsx)(HelpSection, { header: 'How-to Guides' }), (0, jsx_runtime_1.jsx)(HelpGroup, tslib_1.__assign({ header: 'Create an Image' }, { children: (0, jsx_runtime_1.jsxs)(HelpText, { children: [(0, jsx_runtime_1.jsxs)("p", { children: ["Use the ", (0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.CameraSvg }), " icon in the viewport to bring up the screenshot controls."] }), (0, jsx_runtime_1.jsxs)("p", { children: ["To adjust the size of the image, use the ", (0, jsx_runtime_1.jsx)("i", { children: "Resolution" }), " dropdown."] })] }) })), (0, jsx_runtime_1.jsx)(HelpSection, { header: 'Mouse Controls' }), (0, jsx_runtime_1.jsx)(ViewportHelpContent, {})] });
119
119
  };
120
120
  return HelpContent;
121
121
  }(base_1.PluginUIComponent));
@@ -12,7 +12,7 @@ var screenshot_1 = require("../controls/screenshot");
12
12
  var use_behavior_1 = require("../hooks/use-behavior");
13
13
  var snapshots_1 = require("../state/snapshots");
14
14
  var DownloadScreenshotControls = /** @class */ (function (_super) {
15
- (0, tslib_1.__extends)(DownloadScreenshotControls, _super);
15
+ tslib_1.__extends(DownloadScreenshotControls, _super);
16
16
  function DownloadScreenshotControls() {
17
17
  var _this = _super !== null && _super.apply(this, arguments) || this;
18
18
  _this.state = {
@@ -24,10 +24,10 @@ var DownloadScreenshotControls = /** @class */ (function (_super) {
24
24
  (_a = _this.plugin.helpers.viewportScreenshot) === null || _a === void 0 ? void 0 : _a.download();
25
25
  _this.props.close();
26
26
  };
27
- _this.copy = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
27
+ _this.copy = function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
28
28
  var _a;
29
29
  var _b;
30
- return (0, tslib_1.__generator)(this, function (_c) {
30
+ return tslib_1.__generator(this, function (_c) {
31
31
  switch (_c.label) {
32
32
  case 0:
33
33
  _c.trys.push([0, 2, , 3]);
@@ -47,10 +47,10 @@ var DownloadScreenshotControls = /** @class */ (function (_super) {
47
47
  }
48
48
  });
49
49
  }); };
50
- _this.copyImg = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
50
+ _this.copyImg = function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
51
51
  var src;
52
52
  var _a;
53
- return (0, tslib_1.__generator)(this, function (_b) {
53
+ return tslib_1.__generator(this, function (_b) {
54
54
  switch (_b.label) {
55
55
  case 0: return [4 /*yield*/, ((_a = this.plugin.helpers.viewportScreenshot) === null || _a === void 0 ? void 0 : _a.getImageDataUri())];
56
56
  case 1:
@@ -80,7 +80,7 @@ var DownloadScreenshotControls = /** @class */ (function (_super) {
80
80
  var _this = this;
81
81
  var _a;
82
82
  var hasClipboardApi = !!((_a = navigator.clipboard) === null || _a === void 0 ? void 0 : _a.write);
83
- return (0, jsx_runtime_1.jsxs)("div", { children: [this.state.showPreview && (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-image-preview' }, { children: [(0, jsx_runtime_1.jsx)(screenshot_1.ScreenshotPreview, { plugin: this.plugin }, void 0), (0, jsx_runtime_1.jsx)(CropControls, { plugin: this.plugin }, void 0)] }), void 0), (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [!this.state.imageData && (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ icon: icons_1.CopySvg, onClick: hasClipboardApi ? this.copy : this.copyImg, disabled: this.state.isDisabled }, { children: "Copy" }), void 0), this.state.imageData && (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ onClick: function () { return _this.setState({ imageData: void 0 }); }, disabled: this.state.isDisabled }, { children: "Clear" }), void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ icon: icons_1.GetAppSvg, onClick: this.download, disabled: this.state.isDisabled }, { children: "Download" }), void 0)] }), void 0), this.state.imageData && (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-row msp-copy-image-wrapper' }, { children: [(0, jsx_runtime_1.jsx)("div", { children: "Right click below + Copy Image" }, void 0), (0, jsx_runtime_1.jsx)("img", { src: this.state.imageData, style: { width: '100%', height: 32, display: 'block' } }, void 0)] }), void 0), (0, jsx_runtime_1.jsx)(ScreenshotParams, { plugin: this.plugin, isDisabled: this.state.isDisabled }, void 0), (0, jsx_runtime_1.jsxs)(common_1.ExpandGroup, (0, tslib_1.__assign)({ header: 'State' }, { children: [(0, jsx_runtime_1.jsx)(snapshots_1.StateExportImportControls, { onAction: this.props.close }, void 0), (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, (0, tslib_1.__assign)({ header: 'Save Options', initiallyExpanded: false, noOffset: true }, { children: (0, jsx_runtime_1.jsx)(snapshots_1.LocalStateSnapshotParams, {}, void 0) }), void 0)] }), void 0)] }, void 0);
83
+ return (0, jsx_runtime_1.jsxs)("div", { children: [this.state.showPreview && (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-image-preview' }, { children: [(0, jsx_runtime_1.jsx)(screenshot_1.ScreenshotPreview, { plugin: this.plugin }), (0, jsx_runtime_1.jsx)(CropControls, { plugin: this.plugin })] })), (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [!this.state.imageData && (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ icon: icons_1.CopySvg, onClick: hasClipboardApi ? this.copy : this.copyImg, disabled: this.state.isDisabled }, { children: "Copy" })), this.state.imageData && (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ onClick: function () { return _this.setState({ imageData: void 0 }); }, disabled: this.state.isDisabled }, { children: "Clear" })), (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ icon: icons_1.GetAppSvg, onClick: this.download, disabled: this.state.isDisabled }, { children: "Download" }))] })), this.state.imageData && (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-row msp-copy-image-wrapper' }, { children: [(0, jsx_runtime_1.jsx)("div", { children: "Right click below + Copy Image" }), (0, jsx_runtime_1.jsx)("img", { src: this.state.imageData, style: { width: '100%', height: 32, display: 'block' } })] })), (0, jsx_runtime_1.jsx)(ScreenshotParams, { plugin: this.plugin, isDisabled: this.state.isDisabled }), (0, jsx_runtime_1.jsxs)(common_1.ExpandGroup, tslib_1.__assign({ header: 'State' }, { children: [(0, jsx_runtime_1.jsx)(snapshots_1.StateExportImportControls, { onAction: this.props.close }), (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, tslib_1.__assign({ header: 'Save Options', initiallyExpanded: false, noOffset: true }, { children: (0, jsx_runtime_1.jsx)(snapshots_1.LocalStateSnapshotParams, {}) }))] }))] });
84
84
  };
85
85
  return DownloadScreenshotControls;
86
86
  }(base_1.PluginUIComponent));
@@ -89,7 +89,7 @@ function ScreenshotParams(_a) {
89
89
  var plugin = _a.plugin, isDisabled = _a.isDisabled;
90
90
  var helper = plugin.helpers.viewportScreenshot;
91
91
  var values = (0, use_behavior_1.useBehavior)(helper.behaviors.values);
92
- return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: helper.params, values: values, onChangeValues: function (v) { return helper.behaviors.values.next(v); }, isDisabled: isDisabled }, void 0);
92
+ return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: helper.params, values: values, onChangeValues: function (v) { return helper.behaviors.values.next(v); }, isDisabled: isDisabled });
93
93
  }
94
94
  function CropControls(_a) {
95
95
  var plugin = _a.plugin;
@@ -98,5 +98,5 @@ function CropControls(_a) {
98
98
  (0, use_behavior_1.useBehavior)(helper === null || helper === void 0 ? void 0 : helper.behaviors.relativeCrop);
99
99
  if (!helper)
100
100
  return null;
101
- return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { width: '100%', height: '24px', marginTop: '8px' } }, { children: [(0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.CropOrginalSvg, title: 'Auto-crop', inline: true, isSelected: cropParams.auto, style: { background: 'transparent', float: 'left', width: 'auto', height: '24px', lineHeight: '24px' }, toggle: function () { return helper.toggleAutocrop(); }, label: 'Auto-crop ' + (cropParams.auto ? 'On' : 'Off') }, void 0), !cropParams.auto && (0, jsx_runtime_1.jsx)(common_1.Button, { icon: icons_1.CropSvg, title: 'Crop', style: { background: 'transparent', float: 'right', height: '24px', lineHeight: '24px', width: '24px', padding: '0' }, onClick: function () { return helper.autocrop(); } }, void 0), !cropParams.auto && !helper.isFullFrame && (0, jsx_runtime_1.jsx)(common_1.Button, { icon: icons_1.CropFreeSvg, title: 'Reset Crop', style: { background: 'transparent', float: 'right', height: '24px', lineHeight: '24px', width: '24px', padding: '0' }, onClick: function () { return helper.resetCrop(); } }, void 0)] }), void 0);
101
+ return (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ style: { width: '100%', height: '24px', marginTop: '8px' } }, { children: [(0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.CropOrginalSvg, title: 'Auto-crop', inline: true, isSelected: cropParams.auto, style: { background: 'transparent', float: 'left', width: 'auto', height: '24px', lineHeight: '24px' }, toggle: function () { return helper.toggleAutocrop(); }, label: 'Auto-crop ' + (cropParams.auto ? 'On' : 'Off') }), !cropParams.auto && (0, jsx_runtime_1.jsx)(common_1.Button, { icon: icons_1.CropSvg, title: 'Crop', style: { background: 'transparent', float: 'right', height: '24px', lineHeight: '24px', width: '24px', padding: '0' }, onClick: function () { return helper.autocrop(); } }), !cropParams.auto && !helper.isFullFrame && (0, jsx_runtime_1.jsx)(common_1.Button, { icon: icons_1.CropFreeSvg, title: 'Reset Crop', style: { background: 'transparent', float: 'right', height: '24px', lineHeight: '24px', width: '24px', padding: '0' }, onClick: function () { return helper.resetCrop(); } })] }));
102
102
  }
@@ -20,7 +20,7 @@ var base_1 = require("../base");
20
20
  var parameters_1 = require("../controls/parameters");
21
21
  var help_1 = require("./help");
22
22
  var SimpleSettingsControl = /** @class */ (function (_super) {
23
- (0, tslib_1.__extends)(SimpleSettingsControl, _super);
23
+ tslib_1.__extends(SimpleSettingsControl, _super);
24
24
  function SimpleSettingsControl() {
25
25
  return _super !== null && _super.apply(this, arguments) || this;
26
26
  }
@@ -36,7 +36,7 @@ var SimpleSettingsControl = /** @class */ (function (_super) {
36
36
  SimpleSettingsControl.prototype.render = function () {
37
37
  if (!this.plugin.canvas3d)
38
38
  return null;
39
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterMappingControl, { mapping: SimpleSettingsMapping }, void 0), (0, jsx_runtime_1.jsx)(help_1.ViewportHelpContent, {}, void 0)] }, void 0);
39
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterMappingControl, { mapping: SimpleSettingsMapping }), (0, jsx_runtime_1.jsx)(help_1.ViewportHelpContent, {})] });
40
40
  };
41
41
  return SimpleSettingsControl;
42
42
  }(base_1.PluginUIComponent));
@@ -58,7 +58,7 @@ var SimpleSettingsParams = {
58
58
  outline: canvas3d_1.Canvas3DParams.postprocessing.params.outline,
59
59
  fog: canvas3d_1.Canvas3DParams.cameraFog,
60
60
  }, { isFlat: true }),
61
- clipping: param_definition_1.ParamDefinition.Group((0, tslib_1.__assign)({}, canvas3d_1.Canvas3DParams.cameraClipping.params), { pivot: 'radius' }),
61
+ clipping: param_definition_1.ParamDefinition.Group(tslib_1.__assign({}, canvas3d_1.Canvas3DParams.cameraClipping.params), { pivot: 'radius' }),
62
62
  layout: param_definition_1.ParamDefinition.MultiSelect([], param_definition_1.ParamDefinition.objectToOptions(LayoutOptions)),
63
63
  };
64
64
  var SimpleSettingsMapping = (0, param_mapping_1.ParamMapping)({
@@ -108,7 +108,7 @@ var SimpleSettingsMapping = (0, param_mapping_1.ParamMapping)({
108
108
  outline: canvas.postprocessing.outline,
109
109
  fog: canvas.cameraFog,
110
110
  },
111
- clipping: (0, tslib_1.__assign)({}, canvas.cameraClipping)
111
+ clipping: tslib_1.__assign({}, canvas.cameraClipping)
112
112
  };
113
113
  },
114
114
  update: function (s, props) {
@@ -127,9 +127,9 @@ var SimpleSettingsMapping = (0, param_mapping_1.ParamMapping)({
127
127
  props.layout = s.layout;
128
128
  },
129
129
  apply: function (props, ctx) {
130
- return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
130
+ return tslib_1.__awaiter(this, void 0, void 0, function () {
131
131
  var hideLeft, state;
132
- return (0, tslib_1.__generator)(this, function (_a) {
132
+ return tslib_1.__generator(this, function (_a) {
133
133
  switch (_a.label) {
134
134
  case 0: return [4 /*yield*/, commands_1.PluginCommands.Canvas3D.SetSettings(ctx, { settings: props.canvas })];
135
135
  case 1:
@@ -13,14 +13,14 @@ var canvas_1 = require("./viewport/canvas");
13
13
  var screenshot_1 = require("./viewport/screenshot");
14
14
  var simple_settings_1 = require("./viewport/simple-settings");
15
15
  var ViewportControls = /** @class */ (function (_super) {
16
- (0, tslib_1.__extends)(ViewportControls, _super);
16
+ tslib_1.__extends(ViewportControls, _super);
17
17
  function ViewportControls() {
18
18
  var _this = _super !== null && _super.apply(this, arguments) || this;
19
19
  _this.allCollapsedState = {
20
20
  isSettingsExpanded: false,
21
21
  isScreenshotExpanded: false
22
22
  };
23
- _this.state = (0, tslib_1.__assign)({}, _this.allCollapsedState);
23
+ _this.state = tslib_1.__assign({}, _this.allCollapsedState);
24
24
  _this.resetCamera = function () {
25
25
  commands_1.PluginCommands.Camera.Reset(_this.plugin, {});
26
26
  };
@@ -55,7 +55,7 @@ var ViewportControls = /** @class */ (function (_super) {
55
55
  var _this = this;
56
56
  return function (e) {
57
57
  var _a;
58
- _this.setState((0, tslib_1.__assign)((0, tslib_1.__assign)({}, _this.allCollapsedState), (_a = {}, _a[panel] = !_this.state[panel], _a)));
58
+ _this.setState(tslib_1.__assign(tslib_1.__assign({}, _this.allCollapsedState), (_a = {}, _a[panel] = !_this.state[panel], _a)));
59
59
  e === null || e === void 0 ? void 0 : e.currentTarget.blur();
60
60
  };
61
61
  };
@@ -66,17 +66,17 @@ var ViewportControls = /** @class */ (function (_super) {
66
66
  };
67
67
  ViewportControls.prototype.icon = function (icon, onClick, title, isOn) {
68
68
  if (isOn === void 0) { isOn = true; }
69
- return (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icon, toggleState: isOn, onClick: onClick, title: title, style: { background: 'transparent' } }, void 0);
69
+ return (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icon, toggleState: isOn, onClick: onClick, title: title, style: { background: 'transparent' } });
70
70
  };
71
71
  ViewportControls.prototype.render = function () {
72
- return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-viewport-controls', onMouseMove: this.onMouseMove }, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-viewport-controls-buttons' }, { children: [(0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }, void 0), this.icon(icons_1.AutorenewSvg, this.resetCamera, 'Reset Camera')] }, void 0), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }, void 0), this.icon(icons_1.CameraOutlinedSvg, this.toggleScreenshotExpanded, 'Screenshot / State Snapshot', this.state.isScreenshotExpanded)] }, void 0), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }, void 0), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowControls) && this.icon(icons_1.BuildOutlinedSvg, this.toggleControls, 'Toggle Controls Panel', this.plugin.layout.state.showControls), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowExpand) && this.icon(icons_1.FullscreenSvg, this.toggleExpanded, 'Toggle Expanded Viewport', this.plugin.layout.state.isExpanded), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowSettings) && this.icon(icons_1.TuneSvg, this.toggleSettingsExpanded, 'Settings / Controls Info', this.state.isSettingsExpanded)] }, void 0), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowSelectionMode) && (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }, void 0), (0, jsx_runtime_1.jsx)(selection_1.ToggleSelectionModeButton, {}, void 0)] }, void 0)] }), void 0), this.state.isScreenshotExpanded && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-viewport-controls-panel' }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlGroup, (0, tslib_1.__assign)({ header: 'Screenshot / State', title: 'Click to close.', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleScreenshotExpanded, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls' }, { children: (0, jsx_runtime_1.jsx)(screenshot_1.DownloadScreenshotControls, { close: this.toggleScreenshotExpanded }, void 0) }), void 0) }), void 0), this.state.isSettingsExpanded && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-viewport-controls-panel' }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlGroup, (0, tslib_1.__assign)({ header: 'Settings / Controls Info', title: 'Click to close.', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleSettingsExpanded, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls' }, { children: (0, jsx_runtime_1.jsx)(simple_settings_1.SimpleSettingsControl, {}, void 0) }), void 0) }), void 0)] }), void 0);
72
+ return (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-viewport-controls', onMouseMove: this.onMouseMove }, { children: [(0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-viewport-controls-buttons' }, { children: [(0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }), this.icon(icons_1.AutorenewSvg, this.resetCamera, 'Reset Camera')] }), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }), this.icon(icons_1.CameraOutlinedSvg, this.toggleScreenshotExpanded, 'Screenshot / State Snapshot', this.state.isScreenshotExpanded)] }), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowControls) && this.icon(icons_1.BuildOutlinedSvg, this.toggleControls, 'Toggle Controls Panel', this.plugin.layout.state.showControls), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowExpand) && this.icon(icons_1.FullscreenSvg, this.toggleExpanded, 'Toggle Expanded Viewport', this.plugin.layout.state.isExpanded), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowSettings) && this.icon(icons_1.TuneSvg, this.toggleSettingsExpanded, 'Settings / Controls Info', this.state.isSettingsExpanded)] }), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowSelectionMode) && (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }), (0, jsx_runtime_1.jsx)(selection_1.ToggleSelectionModeButton, {})] })] })), this.state.isScreenshotExpanded && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-viewport-controls-panel' }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlGroup, tslib_1.__assign({ header: 'Screenshot / State', title: 'Click to close.', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleScreenshotExpanded, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls' }, { children: (0, jsx_runtime_1.jsx)(screenshot_1.DownloadScreenshotControls, { close: this.toggleScreenshotExpanded }) })) })), this.state.isSettingsExpanded && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-viewport-controls-panel' }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlGroup, tslib_1.__assign({ header: 'Settings / Controls Info', title: 'Click to close.', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleSettingsExpanded, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls' }, { children: (0, jsx_runtime_1.jsx)(simple_settings_1.SimpleSettingsControl, {}) })) }))] }));
73
73
  };
74
74
  return ViewportControls;
75
75
  }(base_1.PluginUIComponent));
76
76
  exports.ViewportControls = ViewportControls;
77
77
  var Logo = function () {
78
- return (0, jsx_runtime_1.jsx)("a", { className: 'msp-logo', href: 'https://molstar.org', target: '_blank' }, void 0);
78
+ return (0, jsx_runtime_1.jsx)("a", { className: 'msp-logo', href: 'https://molstar.org', target: '_blank' });
79
79
  };
80
80
  exports.Logo = Logo;
81
- var Viewport = function () { return (0, jsx_runtime_1.jsx)(canvas_1.ViewportCanvas, { logo: exports.Logo }, void 0); };
81
+ var Viewport = function () { return (0, jsx_runtime_1.jsx)(canvas_1.ViewportCanvas, { logo: exports.Logo }); };
82
82
  exports.Viewport = Viewport;
@@ -242,9 +242,9 @@ var Representation;
242
242
  var qualityProps = (0, util_1.getQualityProps)(Object.assign({}, currentProps, props), currentData);
243
243
  Object.assign(currentProps, props, qualityProps);
244
244
  var visuals = currentProps.visuals;
245
- return mol_task_1.Task.create("Creating or updating '".concat(label, "' representation"), function (runtime) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
245
+ return mol_task_1.Task.create("Creating or updating '".concat(label, "' representation"), function (runtime) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
246
246
  var i, il;
247
- return (0, tslib_1.__generator)(this, function (_a) {
247
+ return tslib_1.__generator(this, function (_a) {
248
248
  switch (_a.label) {
249
249
  case 0:
250
250
  i = 0, il = reprList.length;
@@ -331,8 +331,8 @@ var Representation;
331
331
  if (props === void 0) { props = {}; }
332
332
  var qualityProps = (0, util_1.getQualityProps)(Object.assign({}, currentProps, props));
333
333
  Object.assign(currentProps, props, qualityProps);
334
- return mol_task_1.Task.create("Updating '".concat(label, "' representation"), function (runtime) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
335
- return (0, tslib_1.__generator)(this, function (_a) {
334
+ return mol_task_1.Task.create("Updating '".concat(label, "' representation"), function (runtime) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
335
+ return tslib_1.__generator(this, function (_a) {
336
336
  // TODO
337
337
  geometryState.add(0, renderObject.id);
338
338
  geometryState.snapshot();
@@ -58,6 +58,7 @@ export declare const AngleParams: {
58
58
  flipSided: PD.BooleanParam;
59
59
  flatShaded: PD.BooleanParam;
60
60
  xrayShaded: PD.BooleanParam;
61
+ allowTransparentBackfaces: PD.BooleanParam;
61
62
  bumpFrequency: PD.Numeric;
62
63
  bumpAmplitude: PD.Numeric;
63
64
  lineSizeAttenuation: PD.BooleanParam;
@@ -31,17 +31,17 @@ var SharedParams = {
31
31
  color: param_definition_1.ParamDefinition.Color(names_1.ColorNames.lightgreen),
32
32
  arcScale: param_definition_1.ParamDefinition.Numeric(0.7, { min: 0.01, max: 1, step: 0.01 })
33
33
  };
34
- var LinesParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, lines_1.Lines.Params), SharedParams), { lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(true), linesSize: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 5, step: 0.01 }), dashLength: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 0.2, step: 0.01 }) });
35
- var VectorsParams = (0, tslib_1.__assign)({}, LinesParams);
36
- var ArcParams = (0, tslib_1.__assign)({}, LinesParams);
37
- var SectorParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), SharedParams), { ignoreLight: param_definition_1.ParamDefinition.Boolean(true), sectorOpacity: param_definition_1.ParamDefinition.Numeric(0.75, { min: 0, max: 1, step: 0.01 }) });
34
+ var LinesParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, lines_1.Lines.Params), SharedParams), { lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(true), linesSize: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 5, step: 0.01 }), dashLength: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 0.2, step: 0.01 }) });
35
+ var VectorsParams = tslib_1.__assign({}, LinesParams);
36
+ var ArcParams = tslib_1.__assign({}, LinesParams);
37
+ var SectorParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), SharedParams), { ignoreLight: param_definition_1.ParamDefinition.Boolean(true), sectorOpacity: param_definition_1.ParamDefinition.Numeric(0.75, { min: 0, max: 1, step: 0.01 }) });
38
38
  var AngleVisuals = {
39
- 'vectors': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getVectorsShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
40
- 'arc': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getArcShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
41
- 'sector': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getSectorShape, mesh_1.Mesh.Utils, { modifyProps: function (p) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, p), { alpha: p.sectorOpacity })); }, modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { markerActions: marker_action_1.MarkerActions.Highlighting })); } }); },
42
- 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { markerActions: marker_action_1.MarkerAction.None })); } }); },
39
+ 'vectors': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getVectorsShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
40
+ 'arc': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getArcShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
41
+ 'sector': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getSectorShape, mesh_1.Mesh.Utils, { modifyProps: function (p) { return (tslib_1.__assign(tslib_1.__assign({}, p), { alpha: p.sectorOpacity })); }, modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { markerActions: marker_action_1.MarkerActions.Highlighting })); } }); },
42
+ 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { markerActions: marker_action_1.MarkerAction.None })); } }); },
43
43
  };
44
- exports.AngleParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, VectorsParams), ArcParams), SectorParams), common_1.LociLabelTextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['vectors', 'sector', 'text'], param_definition_1.ParamDefinition.objectToOptions(AngleVisuals)) });
44
+ exports.AngleParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, VectorsParams), ArcParams), SectorParams), common_1.LociLabelTextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['vectors', 'sector', 'text'], param_definition_1.ParamDefinition.objectToOptions(AngleVisuals)) });
45
45
  //
46
46
  function getAngleState() {
47
47
  return {
@@ -16,4 +16,4 @@ exports.MeasurementRepresentationCommonTextParams = {
16
16
  textColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.black, { isEssential: true }),
17
17
  textSize: param_definition_1.ParamDefinition.Numeric(0.5, { min: 0.1, max: 10, step: 0.1 }, { isEssential: true }),
18
18
  };
19
- exports.LociLabelTextParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, text_1.Text.Params), exports.MeasurementRepresentationCommonTextParams), { borderWidth: param_definition_1.ParamDefinition.Numeric(0.2, { min: 0, max: 0.5, step: 0.01 }) });
19
+ exports.LociLabelTextParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, text_1.Text.Params), exports.MeasurementRepresentationCommonTextParams), { borderWidth: param_definition_1.ParamDefinition.Numeric(0.2, { min: 0, max: 0.5, step: 0.01 }) });
@@ -58,6 +58,7 @@ export declare const DihedralParams: {
58
58
  flipSided: PD.BooleanParam;
59
59
  flatShaded: PD.BooleanParam;
60
60
  xrayShaded: PD.BooleanParam;
61
+ allowTransparentBackfaces: PD.BooleanParam;
61
62
  bumpFrequency: PD.Numeric;
62
63
  bumpAmplitude: PD.Numeric;
63
64
  lineSizeAttenuation: PD.BooleanParam;
@@ -31,22 +31,22 @@ var SharedParams = {
31
31
  color: param_definition_1.ParamDefinition.Color(names_1.ColorNames.lightgreen),
32
32
  arcScale: param_definition_1.ParamDefinition.Numeric(0.7, { min: 0.01, max: 1, step: 0.01 })
33
33
  };
34
- var LinesParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, lines_1.Lines.Params), SharedParams), { lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(true), linesSize: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 5, step: 0.01 }), dashLength: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 0.2, step: 0.01 }) });
35
- var VectorsParams = (0, tslib_1.__assign)({}, LinesParams);
36
- var ExtendersParams = (0, tslib_1.__assign)({}, LinesParams);
37
- var ArmsParams = (0, tslib_1.__assign)({}, LinesParams);
38
- var ArcParams = (0, tslib_1.__assign)({}, LinesParams);
39
- var SectorParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), SharedParams), { ignoreLight: param_definition_1.ParamDefinition.Boolean(true), sectorOpacity: param_definition_1.ParamDefinition.Numeric(0.75, { min: 0, max: 1, step: 0.01 }) });
34
+ var LinesParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, lines_1.Lines.Params), SharedParams), { lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(true), linesSize: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 5, step: 0.01 }), dashLength: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 0.2, step: 0.01 }) });
35
+ var VectorsParams = tslib_1.__assign({}, LinesParams);
36
+ var ExtendersParams = tslib_1.__assign({}, LinesParams);
37
+ var ArmsParams = tslib_1.__assign({}, LinesParams);
38
+ var ArcParams = tslib_1.__assign({}, LinesParams);
39
+ var SectorParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), SharedParams), { ignoreLight: param_definition_1.ParamDefinition.Boolean(true), sectorOpacity: param_definition_1.ParamDefinition.Numeric(0.75, { min: 0, max: 1, step: 0.01 }) });
40
40
  var DihedralVisuals = {
41
- 'vectors': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getVectorsShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
42
- 'extenders': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getExtendersShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
43
- 'connector': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getConnectorShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
44
- 'arms': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getArmsShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
45
- 'arc': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getArcShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
46
- 'sector': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getSectorShape, mesh_1.Mesh.Utils, { modifyProps: function (p) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, p), { alpha: p.sectorOpacity })); }, modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { markerActions: marker_action_1.MarkerActions.Highlighting })); } }); },
47
- 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { markerActions: marker_action_1.MarkerAction.None })); } }); },
41
+ 'vectors': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getVectorsShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
42
+ 'extenders': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getExtendersShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
43
+ 'connector': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getConnectorShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
44
+ 'arms': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getArmsShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
45
+ 'arc': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getArcShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
46
+ 'sector': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getSectorShape, mesh_1.Mesh.Utils, { modifyProps: function (p) { return (tslib_1.__assign(tslib_1.__assign({}, p), { alpha: p.sectorOpacity })); }, modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { markerActions: marker_action_1.MarkerActions.Highlighting })); } }); },
47
+ 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { markerActions: marker_action_1.MarkerAction.None })); } }); },
48
48
  };
49
- exports.DihedralParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, VectorsParams), ExtendersParams), ArmsParams), ArcParams), SectorParams), common_1.LociLabelTextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['extenders', 'arms', 'sector', 'text'], param_definition_1.ParamDefinition.objectToOptions(DihedralVisuals)) });
49
+ exports.DihedralParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, VectorsParams), ExtendersParams), ArmsParams), ArcParams), SectorParams), common_1.LociLabelTextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['extenders', 'arms', 'sector', 'text'], param_definition_1.ParamDefinition.objectToOptions(DihedralVisuals)) });
50
50
  //
51
51
  function getDihedralState() {
52
52
  return {
@@ -25,13 +25,13 @@ var geometry_1 = require("../../../mol-math/geometry");
25
25
  var SharedParams = {
26
26
  unitLabel: param_definition_1.ParamDefinition.Text('\u212B', { isEssential: true })
27
27
  };
28
- var LineParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, lines_1.Lines.Params), SharedParams), { lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(true), linesColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.lightgreen, { isEssential: true }), linesSize: param_definition_1.ParamDefinition.Numeric(0.075, { min: 0.01, max: 5, step: 0.01 }), dashLength: param_definition_1.ParamDefinition.Numeric(0.2, { min: 0.01, max: 0.2, step: 0.01 }) });
29
- var TextParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, common_1.LociLabelTextParams), SharedParams);
28
+ var LineParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, lines_1.Lines.Params), SharedParams), { lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(true), linesColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.lightgreen, { isEssential: true }), linesSize: param_definition_1.ParamDefinition.Numeric(0.075, { min: 0.01, max: 5, step: 0.01 }), dashLength: param_definition_1.ParamDefinition.Numeric(0.2, { min: 0.01, max: 0.2, step: 0.01 }) });
29
+ var TextParams = tslib_1.__assign(tslib_1.__assign({}, common_1.LociLabelTextParams), SharedParams);
30
30
  var DistanceVisuals = {
31
- 'lines': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getLinesShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { markerActions: marker_action_1.MarkerActions.Highlighting })); } }); },
32
- 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { markerActions: marker_action_1.MarkerAction.None })); } }); },
31
+ 'lines': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getLinesShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { markerActions: marker_action_1.MarkerActions.Highlighting })); } }); },
32
+ 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { markerActions: marker_action_1.MarkerAction.None })); } }); },
33
33
  };
34
- exports.DistanceParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, LineParams), TextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['lines', 'text'], param_definition_1.ParamDefinition.objectToOptions(DistanceVisuals)) });
34
+ exports.DistanceParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, LineParams), TextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['lines', 'text'], param_definition_1.ParamDefinition.objectToOptions(DistanceVisuals)) });
35
35
  //
36
36
  function getDistanceState() {
37
37
  return {
@@ -17,11 +17,11 @@ var text_builder_1 = require("../../../mol-geo/geometry/text/text-builder");
17
17
  var geometry_1 = require("../../../mol-math/geometry");
18
18
  var label_1 = require("../../../mol-theme/label");
19
19
  var common_1 = require("./common");
20
- var TextParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, common_1.LociLabelTextParams), { offsetZ: param_definition_1.ParamDefinition.Numeric(2, { min: 0, max: 10, step: 0.1 }) });
20
+ var TextParams = tslib_1.__assign(tslib_1.__assign({}, common_1.LociLabelTextParams), { offsetZ: param_definition_1.ParamDefinition.Numeric(2, { min: 0, max: 10, step: 0.1 }) });
21
21
  var LabelVisuals = {
22
- 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
22
+ 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
23
23
  };
24
- exports.LabelParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, TextParams), { scaleByRadius: param_definition_1.ParamDefinition.Boolean(true), visuals: param_definition_1.ParamDefinition.MultiSelect(['text'], param_definition_1.ParamDefinition.objectToOptions(LabelVisuals)) });
24
+ exports.LabelParams = tslib_1.__assign(tslib_1.__assign({}, TextParams), { scaleByRadius: param_definition_1.ParamDefinition.Boolean(true), visuals: param_definition_1.ParamDefinition.MultiSelect(['text'], param_definition_1.ParamDefinition.objectToOptions(LabelVisuals)) });
25
25
  //
26
26
  var tmpSphere = (0, geometry_1.Sphere3D)();
27
27
  function label(info, condensed) {
@@ -19,6 +19,7 @@ export declare const OrientationParams: {
19
19
  flatShaded: PD.BooleanParam;
20
20
  ignoreLight: PD.BooleanParam;
21
21
  xrayShaded: PD.BooleanParam;
22
+ allowTransparentBackfaces: PD.BooleanParam;
22
23
  bumpFrequency: PD.Numeric;
23
24
  bumpAmplitude: PD.Numeric;
24
25
  alpha: PD.Numeric;
@@ -27,15 +27,15 @@ var SharedParams = {
27
27
  scaleFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 10, step: 0.1 }),
28
28
  radiusScale: param_definition_1.ParamDefinition.Numeric(2, { min: 0.1, max: 10, step: 0.1 })
29
29
  };
30
- var AxesParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), SharedParams);
31
- var BoxParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), SharedParams);
32
- var EllipsoidParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), SharedParams);
30
+ var AxesParams = tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), SharedParams);
31
+ var BoxParams = tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), SharedParams);
32
+ var EllipsoidParams = tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), SharedParams);
33
33
  var OrientationVisuals = {
34
34
  'axes': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getAxesShape, mesh_1.Mesh.Utils); },
35
35
  'box': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getBoxShape, mesh_1.Mesh.Utils); },
36
36
  'ellipsoid': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getEllipsoidShape, mesh_1.Mesh.Utils); },
37
37
  };
38
- exports.OrientationParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, AxesParams), BoxParams), EllipsoidParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['box'], param_definition_1.ParamDefinition.objectToOptions(OrientationVisuals)) });
38
+ exports.OrientationParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, AxesParams), BoxParams), EllipsoidParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['box'], param_definition_1.ParamDefinition.objectToOptions(OrientationVisuals)) });
39
39
  //
40
40
  function getAxesName(locis) {
41
41
  var label = (0, label_1.structureElementLociLabelMany)(locis, { countsOnly: true });
@@ -18,6 +18,7 @@ export declare const PlaneParams: {
18
18
  flatShaded: PD.BooleanParam;
19
19
  ignoreLight: PD.BooleanParam;
20
20
  xrayShaded: PD.BooleanParam;
21
+ allowTransparentBackfaces: PD.BooleanParam;
21
22
  bumpFrequency: PD.Numeric;
22
23
  bumpAmplitude: PD.Numeric;
23
24
  alpha: PD.Numeric;
@@ -20,11 +20,11 @@ var marker_action_1 = require("../../../mol-util/marker-action");
20
20
  var plane_1 = require("../../../mol-geo/primitive/plane");
21
21
  var structure_1 = require("../../../mol-model/structure");
22
22
  var geometry_1 = require("../../../mol-math/geometry");
23
- var _PlaneParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), { color: param_definition_1.ParamDefinition.Color(names_1.ColorNames.orange), scaleFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 10, step: 0.1 }) });
23
+ var _PlaneParams = tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), { color: param_definition_1.ParamDefinition.Color(names_1.ColorNames.orange), scaleFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 10, step: 0.1 }) });
24
24
  var PlaneVisuals = {
25
25
  'plane': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getPlaneShape, mesh_1.Mesh.Utils); },
26
26
  };
27
- exports.PlaneParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, _PlaneParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['plane'], param_definition_1.ParamDefinition.objectToOptions(PlaneVisuals)) });
27
+ exports.PlaneParams = tslib_1.__assign(tslib_1.__assign({}, _PlaneParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['plane'], param_definition_1.ParamDefinition.objectToOptions(PlaneVisuals)) });
28
28
  //
29
29
  function getPlaneName(locis) {
30
30
  var label = (0, label_1.structureElementLociLabelMany)(locis, { countsOnly: true });
@@ -21,6 +21,7 @@ export declare const UnitcellParams: {
21
21
  flatShaded: PD.BooleanParam;
22
22
  ignoreLight: PD.BooleanParam;
23
23
  xrayShaded: PD.BooleanParam;
24
+ allowTransparentBackfaces: PD.BooleanParam;
24
25
  bumpFrequency: PD.Numeric;
25
26
  bumpAmplitude: PD.Numeric;
26
27
  alpha: PD.Numeric;
@@ -31,11 +31,11 @@ var CellAttachment = {
31
31
  corner: 'Corner',
32
32
  center: 'Center'
33
33
  };
34
- var CellParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), { cellColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.orange), cellScale: param_definition_1.ParamDefinition.Numeric(2, { min: 0.1, max: 5, step: 0.1 }), ref: param_definition_1.ParamDefinition.Select('model', param_definition_1.ParamDefinition.objectToOptions(CellRef), { isEssential: true }), attachment: param_definition_1.ParamDefinition.Select('corner', param_definition_1.ParamDefinition.objectToOptions(CellAttachment), { isEssential: true }) });
34
+ var CellParams = tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), { cellColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.orange), cellScale: param_definition_1.ParamDefinition.Numeric(2, { min: 0.1, max: 5, step: 0.1 }), ref: param_definition_1.ParamDefinition.Select('model', param_definition_1.ParamDefinition.objectToOptions(CellRef), { isEssential: true }), attachment: param_definition_1.ParamDefinition.Select('corner', param_definition_1.ParamDefinition.objectToOptions(CellAttachment), { isEssential: true }) });
35
35
  var UnitcellVisuals = {
36
36
  'mesh': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getUnitcellShape, mesh_1.Mesh.Utils); },
37
37
  };
38
- exports.UnitcellParams = (0, tslib_1.__assign)({}, CellParams);
38
+ exports.UnitcellParams = tslib_1.__assign({}, CellParams);
39
39
  function getUnitcellMesh(data, props, mesh) {
40
40
  var state = mesh_builder_1.MeshBuilder.createState(256, 128, mesh);
41
41
  var fromFractional = data.symmetry.spacegroup.cell.fromFractional;