molstar 3.3.1 → 3.6.0

package/lib/commonjs/mol-geo/geometry/image/image.js

@@ -93,7 +93,7 @@ var Image;
         return create(imageTexture, corners, groupTexture, image);
     }
     Image.createEmpty = createEmpty;
-    Image.Params = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, base_1.BaseGeometry.Params), { interpolation: param_definition_1.ParamDefinition.Select('bspline', param_definition_1.ParamDefinition.objectToOptions(exports.InterpolationTypes)) });
+    Image.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { interpolation: param_definition_1.ParamDefinition.Select('bspline', param_definition_1.ParamDefinition.objectToOptions(exports.InterpolationTypes)) });
     Image.Utils = {
         Params: Image.Params,
         createEmpty: createEmpty,
@@ -117,13 +117,13 @@ var Image;
         var counts = { drawCount: QuadIndices.length, vertexCount: util_3.QuadPositions.length / 3, groupCount: groupCount, instanceCount: instanceCount };
         var invariantBoundingSphere = geometry_1.Sphere3D.clone(image.boundingSphere);
         var boundingSphere = (0, util_2.calculateTransformBoundingSphere)(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ dGeometryType: mol_util_1.ValueCell.create('image') }, color), marker), overpaint), transparency), material), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { aPosition: image.cornerBuffer, aUv: mol_util_1.ValueCell.create(QuadUvs), elements: mol_util_1.ValueCell.create(QuadIndices), 
+        return tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({ dGeometryType: mol_util_1.ValueCell.create('image') }, color), marker), overpaint), transparency), material), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { aPosition: image.cornerBuffer, aUv: mol_util_1.ValueCell.create(QuadUvs), elements: mol_util_1.ValueCell.create(QuadIndices), 
             // aGroup is used as a vertex index here, group id is in tGroupTex
             aGroup: mol_util_1.ValueCell.create((0, array_1.fillSerial)(new Float32Array(4))), boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)), dInterpolation: mol_util_1.ValueCell.create(props.interpolation), uImageTexDim: image.imageTextureDim, tImageTex: image.imageTexture, tGroupTex: image.groupTexture });
     }
     function createValuesSimple(image, props, colorValue, sizeValue, transform) {
         var s = base_1.BaseGeometry.createSimple(colorValue, sizeValue, transform);
-        var p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(Image.Params)), props);
+        var p = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(Image.Params)), props);
         return createValues(image, s.transform, s.locationIterator, s.theme, p);
     }
     function updateValues(values, props) {

package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts

@@ -44,7 +44,6 @@ export declare namespace Lines {
         material: PD.Group<PD.Normalize<{
             metalness: number;
             roughness: number;
-            /** Number of lines */
             bumpiness: number;
         }>>;
         clip: PD.Group<PD.Normalize<{

package/lib/commonjs/mol-geo/geometry/lines/lines.js

@@ -123,7 +123,7 @@ var Lines;
     }
     Lines.transform = transform;
     //
-    Lines.Params = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, base_1.BaseGeometry.Params), { sizeFactor: param_definition_1.ParamDefinition.Numeric(2, { min: 0, max: 10, step: 0.1 }), lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(false) });
+    Lines.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { sizeFactor: param_definition_1.ParamDefinition.Numeric(2, { min: 0, max: 10, step: 0.1 }), lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(false) });
     Lines.Utils = {
         Params: Lines.Params,
         createEmpty: createEmpty,
@@ -168,11 +168,11 @@ var Lines;
         var counts = { drawCount: lines.lineCount * 2 * 3, vertexCount: lines.lineCount * 4, groupCount: groupCount, instanceCount: instanceCount };
         var invariantBoundingSphere = geometry_1.Sphere3D.clone(lines.boundingSphere);
         var boundingSphere = (0, util_2.calculateTransformBoundingSphere)(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ dGeometryType: mol_util_1.ValueCell.create('lines'), aMapping: lines.mappingBuffer, aGroup: lines.groupBuffer, aStart: lines.startBuffer, aEnd: lines.endBuffer, elements: lines.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), material), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), dLineSizeAttenuation: mol_util_1.ValueCell.create(props.lineSizeAttenuation), uDoubleSided: mol_util_1.ValueCell.create(true), dFlipSided: mol_util_1.ValueCell.create(false) });
+        return tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({ dGeometryType: mol_util_1.ValueCell.create('lines'), aMapping: lines.mappingBuffer, aGroup: lines.groupBuffer, aStart: lines.startBuffer, aEnd: lines.endBuffer, elements: lines.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), material), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), dLineSizeAttenuation: mol_util_1.ValueCell.create(props.lineSizeAttenuation), uDoubleSided: mol_util_1.ValueCell.create(true), dFlipSided: mol_util_1.ValueCell.create(false) });
     }
     function createValuesSimple(lines, props, colorValue, sizeValue, transform) {
         var s = base_1.BaseGeometry.createSimple(colorValue, sizeValue, transform);
-        var p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(Lines.Params)), props);
+        var p = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(Lines.Params)), props);
         return createValues(lines, s.transform, s.locationIterator, s.theme, p);
     }
     function updateValues(values, props) {

package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2021-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2021-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -16,12 +16,14 @@ function calcMeshColorSmoothing(input, resolution, stride, webgl, texture) {
     var colorType = input.colorType, vertexCount = input.vertexCount, groupCount = input.groupCount, positionBuffer = input.positionBuffer, transformBuffer = input.transformBuffer, groupBuffer = input.groupBuffer, itemSize = input.itemSize;
     var isInstanceType = colorType.endsWith('Instance');
     var box = geometry_1.Box3D.fromSphere3D((0, geometry_1.Box3D)(), isInstanceType ? input.boundingSphere : input.invariantBoundingSphere);
+    var pad = 1 + resolution;
+    var expandedBox = geometry_1.Box3D.expand((0, geometry_1.Box3D)(), box, linear_algebra_1.Vec3.create(pad, pad, pad));
     var scaleFactor = 1 / resolution;
-    var scaledBox = geometry_1.Box3D.scale((0, geometry_1.Box3D)(), box, scaleFactor);
+    var scaledBox = geometry_1.Box3D.scale((0, geometry_1.Box3D)(), expandedBox, scaleFactor);
     var gridDim = geometry_1.Box3D.size((0, linear_algebra_1.Vec3)(), scaledBox);
     linear_algebra_1.Vec3.ceil(gridDim, gridDim);
     linear_algebra_1.Vec3.add(gridDim, gridDim, linear_algebra_1.Vec3.create(2, 2, 2));
-    var min = box.min;
+    var min = expandedBox.min;
     var xn = gridDim[0], yn = gridDim[1];
     var _a = (0, util_2.getVolumeTexture2dLayout)(gridDim), width = _a.width, height = _a.height;
     // console.log({ width, height, dim });

package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -62,6 +62,7 @@ export declare namespace Mesh {
         flatShaded: PD.BooleanParam;
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
+        allowTransparentBackfaces: PD.BooleanParam;
         bumpFrequency: PD.Numeric;
         bumpAmplitude: PD.Numeric;
         alpha: PD.Numeric;

package/lib/commonjs/mol-geo/geometry/mesh/mesh.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>
@@ -554,7 +554,7 @@ var Mesh;
     }
     Mesh.smoothEdges = smoothEdges;
     //
-    Mesh.Params = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, base_1.BaseGeometry.Params), { doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), flipSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), flatShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
+    Mesh.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), flipSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), flatShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), allowTransparentBackfaces: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
     Mesh.Utils = {
         Params: Mesh.Params,
         createEmpty: createEmpty,
@@ -596,11 +596,11 @@ var Mesh;
         var counts = { drawCount: mesh.triangleCount * 3, vertexCount: mesh.vertexCount, groupCount: groupCount, instanceCount: instanceCount };
         var invariantBoundingSphere = geometry_1.Sphere3D.clone(mesh.boundingSphere);
         var boundingSphere = (0, util_3.calculateTransformBoundingSphere)(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ dGeometryType: mol_util_1.ValueCell.create('mesh'), aPosition: mesh.vertexBuffer, aNormal: mesh.normalBuffer, aGroup: mesh.groupBuffer, elements: mesh.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), marker), overpaint), transparency), material), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { uDoubleSided: mol_util_1.ValueCell.create(props.doubleSided), dFlatShaded: mol_util_1.ValueCell.create(props.flatShaded), dFlipSided: mol_util_1.ValueCell.create(props.flipSided), dIgnoreLight: mol_util_1.ValueCell.create(props.ignoreLight), dXrayShaded: mol_util_1.ValueCell.create(props.xrayShaded), uBumpFrequency: mol_util_1.ValueCell.create(props.bumpFrequency), uBumpAmplitude: mol_util_1.ValueCell.create(props.bumpAmplitude), meta: mol_util_1.ValueCell.create(mesh.meta) });
+        return tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({ dGeometryType: mol_util_1.ValueCell.create('mesh'), aPosition: mesh.vertexBuffer, aNormal: mesh.normalBuffer, aGroup: mesh.groupBuffer, elements: mesh.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), marker), overpaint), transparency), material), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { uDoubleSided: mol_util_1.ValueCell.create(props.doubleSided), dFlatShaded: mol_util_1.ValueCell.create(props.flatShaded), dFlipSided: mol_util_1.ValueCell.create(props.flipSided), dIgnoreLight: mol_util_1.ValueCell.create(props.ignoreLight), dXrayShaded: mol_util_1.ValueCell.create(props.xrayShaded), uBumpFrequency: mol_util_1.ValueCell.create(props.bumpFrequency), uBumpAmplitude: mol_util_1.ValueCell.create(props.bumpAmplitude), meta: mol_util_1.ValueCell.create(mesh.meta) });
     }
     function createValuesSimple(mesh, props, colorValue, sizeValue, transform) {
         var s = base_1.BaseGeometry.createSimple(colorValue, sizeValue, transform);
-        var p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(Mesh.Params)), props);
+        var p = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(Mesh.Params)), props);
         return createValues(mesh, s.transform, s.locationIterator, s.theme, p);
     }
     function updateValues(values, props) {

package/lib/commonjs/mol-geo/geometry/points/points.d.ts

@@ -43,7 +43,7 @@ export declare namespace Points {
         quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
         material: PD.Group<PD.Normalize<{
             metalness: number;
-            roughness: number;
+            roughness: number; /** Number of vertices in the point cloud */
             bumpiness: number;
         }>>;
         clip: PD.Group<PD.Normalize<{

package/lib/commonjs/mol-geo/geometry/points/points.js

@@ -94,7 +94,7 @@ var Points;
         'fuzzy': 'Fuzzy',
     };
     Points.StyleTypeNames = Object.keys(Points.StyleTypes);
-    Points.Params = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, base_1.BaseGeometry.Params), { sizeFactor: param_definition_1.ParamDefinition.Numeric(3, { min: 0, max: 10, step: 0.1 }), pointSizeAttenuation: param_definition_1.ParamDefinition.Boolean(false), pointStyle: param_definition_1.ParamDefinition.Select('square', param_definition_1.ParamDefinition.objectToOptions(Points.StyleTypes)) });
+    Points.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { sizeFactor: param_definition_1.ParamDefinition.Numeric(3, { min: 0, max: 10, step: 0.1 }), pointSizeAttenuation: param_definition_1.ParamDefinition.Boolean(false), pointStyle: param_definition_1.ParamDefinition.Select('square', param_definition_1.ParamDefinition.objectToOptions(Points.StyleTypes)) });
     Points.Utils = {
         Params: Points.Params,
         createEmpty: createEmpty,
@@ -137,11 +137,11 @@ var Points;
         var counts = { drawCount: points.pointCount, vertexCount: points.pointCount, groupCount: groupCount, instanceCount: instanceCount };
         var invariantBoundingSphere = geometry_1.Sphere3D.clone(points.boundingSphere);
         var boundingSphere = (0, util_2.calculateTransformBoundingSphere)(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ dGeometryType: mol_util_1.ValueCell.create('points'), aPosition: points.centerBuffer, aGroup: points.groupBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), material), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), dPointSizeAttenuation: mol_util_1.ValueCell.create(props.pointSizeAttenuation), dPointStyle: mol_util_1.ValueCell.create(props.pointStyle) });
+        return tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({ dGeometryType: mol_util_1.ValueCell.create('points'), aPosition: points.centerBuffer, aGroup: points.groupBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), material), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), dPointSizeAttenuation: mol_util_1.ValueCell.create(props.pointSizeAttenuation), dPointStyle: mol_util_1.ValueCell.create(props.pointStyle) });
     }
     function createValuesSimple(points, props, colorValue, sizeValue, transform) {
         var s = base_1.BaseGeometry.createSimple(colorValue, sizeValue, transform);
-        var p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(Points.Params)), props);
+        var p = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(Points.Params)), props);
         return createValues(points, s.transform, s.locationIterator, s.theme, p);
     }
     function updateValues(values, props) {

package/lib/commonjs/mol-geo/geometry/size-data.js

@@ -56,7 +56,7 @@ function createValueSize(value, sizeData) {
         return sizeData;
     }
     else {
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)({ uSize: mol_util_1.ValueCell.create(value) }, createEmptySizeTexture()), { dSizeType: mol_util_1.ValueCell.create('uniform') });
+        return tslib_1.__assign(tslib_1.__assign({ uSize: mol_util_1.ValueCell.create(value) }, createEmptySizeTexture()), { dSizeType: mol_util_1.ValueCell.create('uniform') });
     }
 }
 exports.createValueSize = createValueSize;

package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -34,6 +34,7 @@ export declare namespace Spheres {
         doubleSided: PD.BooleanParam;
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
+        allowTransparentBackfaces: PD.BooleanParam;
         bumpFrequency: PD.Numeric;
         bumpAmplitude: PD.Numeric;
         alpha: PD.Numeric;

package/lib/commonjs/mol-geo/geometry/spheres/spheres.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -91,7 +91,7 @@ var Spheres;
         mol_util_1.ValueCell.update(spheres.groupBuffer, groups);
         return spheres;
     }
-    Spheres.Params = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, base_1.BaseGeometry.Params), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.1 }), doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
+    Spheres.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.1 }), doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), allowTransparentBackfaces: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
     Spheres.Utils = {
         Params: Spheres.Params,
         createEmpty: createEmpty,
@@ -135,11 +135,11 @@ var Spheres;
         var padding = spheres.boundingSphere.radius ? (0, size_data_1.getMaxSize)(size) * props.sizeFactor : 0;
         var invariantBoundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), spheres.boundingSphere, padding);
         var boundingSphere = (0, util_1.calculateTransformBoundingSphere)(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ dGeometryType: mol_util_1.ValueCell.create('spheres'), aPosition: spheres.centerBuffer, aMapping: spheres.mappingBuffer, aGroup: spheres.groupBuffer, elements: spheres.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), material), clipping), transform), { padding: mol_util_1.ValueCell.create(padding) }), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), uDoubleSided: mol_util_1.ValueCell.create(props.doubleSided), dIgnoreLight: mol_util_1.ValueCell.create(props.ignoreLight), dXrayShaded: mol_util_1.ValueCell.create(props.xrayShaded), uBumpFrequency: mol_util_1.ValueCell.create(props.bumpFrequency), uBumpAmplitude: mol_util_1.ValueCell.create(props.bumpAmplitude) });
+        return tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({ dGeometryType: mol_util_1.ValueCell.create('spheres'), aPosition: spheres.centerBuffer, aMapping: spheres.mappingBuffer, aGroup: spheres.groupBuffer, elements: spheres.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), material), clipping), transform), { padding: mol_util_1.ValueCell.create(padding) }), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), uDoubleSided: mol_util_1.ValueCell.create(props.doubleSided), dIgnoreLight: mol_util_1.ValueCell.create(props.ignoreLight), dXrayShaded: mol_util_1.ValueCell.create(props.xrayShaded), uBumpFrequency: mol_util_1.ValueCell.create(props.bumpFrequency), uBumpAmplitude: mol_util_1.ValueCell.create(props.bumpAmplitude) });
     }
     function createValuesSimple(spheres, props, colorValue, sizeValue, transform) {
         var s = base_1.BaseGeometry.createSimple(colorValue, sizeValue, transform);
-        var p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(Spheres.Params)), props);
+        var p = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(Spheres.Params)), props);
         return createValues(spheres, s.transform, s.locationIterator, s.theme, p);
     }
     function updateValues(values, props) {

package/lib/commonjs/mol-geo/geometry/text/font-atlas.js

@@ -35,7 +35,7 @@ var FontAtlas = /** @class */ (function () {
         this.currentX = 0;
         this.currentY = 0;
         this.cutoff = 0.5;
-        var p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(exports.FontAtlasParams)), props);
+        var p = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(exports.FontAtlasParams)), props);
         this.props = p;
         // create measurements
         var fontSize = 32 * (p.fontQuality + 1);

package/lib/commonjs/mol-geo/geometry/text/text-builder.js

@@ -11,6 +11,7 @@ var param_definition_1 = require("../../../mol-util/param-definition");
 var util_1 = require("../../../mol-data/util");
 var text_1 = require("./text");
 var font_atlas_1 = require("./font-atlas");
+var type_helpers_1 = require("../../../mol-util/type-helpers");
 var quadIndices = new Uint16Array([
     0, 1, 2,
     1, 3, 2
@@ -33,7 +34,7 @@ var TextBuilder;
         var indices = util_1.ChunkedArray.create(Uint32Array, 3, chunkSize, text ? text.indexBuffer.ref.value : initialCount);
         var groups = util_1.ChunkedArray.create(Float32Array, 1, chunkSize, text ? text.groupBuffer.ref.value : initialCount);
         var tcoords = util_1.ChunkedArray.create(Float32Array, 2, chunkSize, text ? text.tcoordBuffer.ref.value : initialCount);
-        var p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(text_1.Text.Params)), props);
+        var p = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(text_1.Text.Params)), props);
         var attachment = p.attachment, background = p.background, backgroundMargin = p.backgroundMargin, tether = p.tether, tetherLength = p.tetherLength, tetherBaseWidth = p.tetherBaseWidth;
         var fontAtlas = (0, font_atlas_1.getFontAtlas)(p);
         var margin = (1 / 2.5) * backgroundMargin;
@@ -226,7 +227,7 @@ var TextBuilder;
                             yBaseCenter = yTop;
                             break;
                         default:
-                            throw new Error('unsupported attachment');
+                            (0, type_helpers_1.assertUnreachable)(attachment);
                     }
                     caAdd2(mappings, xTip, yTip); // tip
                     caAdd2(mappings, xBaseA, yBaseA); // base A

package/lib/commonjs/mol-geo/geometry/text/text.js

@@ -103,7 +103,7 @@ var Text;
         mol_util_1.ValueCell.update(text.tcoordBuffer, tcoords);
         return text;
     }
-    Text.Params = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, base_1.BaseGeometry.Params), font_atlas_1.FontAtlasParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.1 }), borderWidth: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 0.5, step: 0.01 }), borderColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.grey), offsetX: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }), offsetY: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }), offsetZ: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }), background: param_definition_1.ParamDefinition.Boolean(false), backgroundMargin: param_definition_1.ParamDefinition.Numeric(0.2, { min: 0, max: 1, step: 0.01 }), backgroundColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.grey), backgroundOpacity: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 1, step: 0.01 }), tether: param_definition_1.ParamDefinition.Boolean(false), tetherLength: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }), tetherBaseWidth: param_definition_1.ParamDefinition.Numeric(0.3, { min: 0, max: 1, step: 0.01 }), attachment: param_definition_1.ParamDefinition.Select('middle-center', [
+    Text.Params = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), font_atlas_1.FontAtlasParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.1 }), borderWidth: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 0.5, step: 0.01 }), borderColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.grey), offsetX: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }), offsetY: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }), offsetZ: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }), background: param_definition_1.ParamDefinition.Boolean(false), backgroundMargin: param_definition_1.ParamDefinition.Numeric(0.2, { min: 0, max: 1, step: 0.01 }), backgroundColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.grey), backgroundOpacity: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 1, step: 0.01 }), tether: param_definition_1.ParamDefinition.Boolean(false), tetherLength: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }), tetherBaseWidth: param_definition_1.ParamDefinition.Numeric(0.3, { min: 0, max: 1, step: 0.01 }), attachment: param_definition_1.ParamDefinition.Select('middle-center', [
             ['bottom-left', 'bottom-left'], ['bottom-center', 'bottom-center'], ['bottom-right', 'bottom-right'],
             ['middle-left', 'middle-left'], ['middle-center', 'middle-center'], ['middle-right', 'middle-right'],
             ['top-left', 'top-left'], ['top-center', 'top-center'], ['top-right', 'top-right'],
@@ -151,11 +151,11 @@ var Text;
         var padding = getPadding(text.mappingBuffer.ref.value, text.depthBuffer.ref.value, text.charCount, (0, size_data_1.getMaxSize)(size));
         var invariantBoundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), text.boundingSphere, padding);
         var boundingSphere = (0, util_1.calculateTransformBoundingSphere)(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ dGeometryType: mol_util_1.ValueCell.create('text'), aPosition: text.centerBuffer, aMapping: text.mappingBuffer, aDepth: text.depthBuffer, aGroup: text.groupBuffer, elements: text.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), substance), clipping), transform), { aTexCoord: text.tcoordBuffer, tFont: text.fontTexture, padding: mol_util_1.ValueCell.create(padding) }), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), uBorderWidth: mol_util_1.ValueCell.create((0, interpolate_1.clamp)(props.borderWidth, 0, 0.5)), uBorderColor: mol_util_1.ValueCell.create(color_1.Color.toArrayNormalized(props.borderColor, linear_algebra_1.Vec3.zero(), 0)), uOffsetX: mol_util_1.ValueCell.create(props.offsetX), uOffsetY: mol_util_1.ValueCell.create(props.offsetY), uOffsetZ: mol_util_1.ValueCell.create(props.offsetZ), uBackgroundColor: mol_util_1.ValueCell.create(color_1.Color.toArrayNormalized(props.backgroundColor, linear_algebra_1.Vec3.zero(), 0)), uBackgroundOpacity: mol_util_1.ValueCell.create(props.backgroundOpacity) });
+        return tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({ dGeometryType: mol_util_1.ValueCell.create('text'), aPosition: text.centerBuffer, aMapping: text.mappingBuffer, aDepth: text.depthBuffer, aGroup: text.groupBuffer, elements: text.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), substance), clipping), transform), { aTexCoord: text.tcoordBuffer, tFont: text.fontTexture, padding: mol_util_1.ValueCell.create(padding) }), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), uBorderWidth: mol_util_1.ValueCell.create((0, interpolate_1.clamp)(props.borderWidth, 0, 0.5)), uBorderColor: mol_util_1.ValueCell.create(color_1.Color.toArrayNormalized(props.borderColor, linear_algebra_1.Vec3.zero(), 0)), uOffsetX: mol_util_1.ValueCell.create(props.offsetX), uOffsetY: mol_util_1.ValueCell.create(props.offsetY), uOffsetZ: mol_util_1.ValueCell.create(props.offsetZ), uBackgroundColor: mol_util_1.ValueCell.create(color_1.Color.toArrayNormalized(props.backgroundColor, linear_algebra_1.Vec3.zero(), 0)), uBackgroundOpacity: mol_util_1.ValueCell.create(props.backgroundOpacity) });
     }
     function createValuesSimple(text, props, colorValue, sizeValue, transform) {
         var s = base_1.BaseGeometry.createSimple(colorValue, sizeValue, transform);
-        var p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(Text.Params)), props);
+        var p = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(Text.Params)), props);
         return createValues(text, s.transform, s.locationIterator, s.theme, p);
     }
     function updateValues(values, props) {

package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2021-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2021-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -113,7 +113,7 @@ function createAccumulateRenderable(ctx, input, box, resolution, stride) {
         uBboxSize: mol_util_1.ValueCell.create(extent),
         uResolution: mol_util_1.ValueCell.create(resolution),
     };
-    var schema = (0, tslib_1.__assign)({}, exports.ColorAccumulateSchema);
+    var schema = tslib_1.__assign({}, exports.ColorAccumulateSchema);
     var shaderCode = (0, shader_code_1.ShaderCode)('accumulate', accumulate_vert_1.accumulate_vert, accumulate_frag_1.accumulate_frag, { drawBuffers: 'required' });
     var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'points', shaderCode, schema, values);
     return (0, renderable_1.createComputeRenderable)(renderItem, values);
@@ -130,7 +130,7 @@ function setAccumulateDefaults(ctx) {
     state.blendEquation(gl.FUNC_ADD);
 }
 //
-exports.ColorNormalizeSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), tCount: (0, schema_1.TextureSpec)('texture', 'alpha', 'float', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2') });
+exports.ColorNormalizeSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), tCount: (0, schema_1.TextureSpec)('texture', 'alpha', 'float', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2') });
 var ColorNormalizeName = 'color-normalize';
 function getNormalizeRenderable(ctx, color, count) {
     if (ctx.namedComputeRenderables[ColorNormalizeName]) {
@@ -146,8 +146,8 @@ function getNormalizeRenderable(ctx, color, count) {
     return ctx.namedComputeRenderables[ColorNormalizeName];
 }
 function createColorNormalizeRenderable(ctx, color, count) {
-    var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tColor: mol_util_1.ValueCell.create(color), tCount: mol_util_1.ValueCell.create(count), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(color.getWidth(), color.getHeight())) });
-    var schema = (0, tslib_1.__assign)({}, exports.ColorNormalizeSchema);
+    var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tColor: mol_util_1.ValueCell.create(color), tCount: mol_util_1.ValueCell.create(count), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(color.getWidth(), color.getHeight())) });
+    var schema = tslib_1.__assign({}, exports.ColorNormalizeSchema);
     var shaderCode = (0, shader_code_1.ShaderCode)('normalize', quad_vert_1.quad_vert, normalize_frag_1.normalize_frag);
     var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', shaderCode, schema, values);
     return (0, renderable_1.createComputeRenderable)(renderItem, values);
@@ -191,12 +191,14 @@ function calcTextureMeshColorSmoothing(input, resolution, stride, webgl, texture
     var gl = webgl.gl, resources = webgl.resources, state = webgl.state, _a = webgl.extensions, colorBufferHalfFloat = _a.colorBufferHalfFloat, textureHalfFloat = _a.textureHalfFloat;
     var isInstanceType = input.colorType.endsWith('Instance');
     var box = geometry_1.Box3D.fromSphere3D((0, geometry_1.Box3D)(), isInstanceType ? input.boundingSphere : input.invariantBoundingSphere);
+    var pad = 1 + resolution;
+    var expandedBox = geometry_1.Box3D.expand((0, geometry_1.Box3D)(), box, linear_algebra_1.Vec3.create(pad, pad, pad));
     var scaleFactor = 1 / resolution;
-    var scaledBox = geometry_1.Box3D.scale((0, geometry_1.Box3D)(), box, scaleFactor);
+    var scaledBox = geometry_1.Box3D.scale((0, geometry_1.Box3D)(), expandedBox, scaleFactor);
     var gridDim = geometry_1.Box3D.size((0, linear_algebra_1.Vec3)(), scaledBox);
     linear_algebra_1.Vec3.ceil(gridDim, gridDim);
     linear_algebra_1.Vec3.add(gridDim, gridDim, linear_algebra_1.Vec3.create(2, 2, 2));
-    var min = box.min;
+    var min = expandedBox.min;
     var dx = gridDim[0], dy = gridDim[1], dz = gridDim[2];
     var _b = getTexture2dSize(gridDim), width = _b.texDimX, height = _b.texDimY, texCols = _b.texCols;
     // console.log({ width, height, texCols, dim, resolution });
@@ -230,7 +232,7 @@ function calcTextureMeshColorSmoothing(input, resolution, stride, webgl, texture
     countTexture.define(width, height);
     accumulateTexture.attachFramebuffer(framebuffer, 0);
     countTexture.attachFramebuffer(framebuffer, 1);
-    var accumulateRenderable = getAccumulateRenderable(webgl, input, box, resolution, stride);
+    var accumulateRenderable = getAccumulateRenderable(webgl, input, expandedBox, resolution, stride);
     state.currentRenderItemId = -1;
     framebuffer.bind();
     drawBuffers.drawBuffers([

package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -45,6 +45,7 @@ export declare namespace TextureMesh {
         flatShaded: PD.BooleanParam;
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
+        allowTransparentBackfaces: PD.BooleanParam;
         bumpFrequency: PD.Numeric;
         bumpAmplitude: PD.Numeric;
         alpha: PD.Numeric;

package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -89,7 +89,7 @@ var TextureMesh;
         return create(0, 0, vt, gt, nt, bs, textureMesh);
     }
     TextureMesh.createEmpty = createEmpty;
-    TextureMesh.Params = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, base_1.BaseGeometry.Params), { doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), flipSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), flatShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
+    TextureMesh.Params = tslib_1.__assign(tslib_1.__assign({}, base_1.BaseGeometry.Params), { doubleSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.CustomQualityParamInfo), flipSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), flatShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), xrayShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), allowTransparentBackfaces: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory), bumpAmplitude: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 5, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
     TextureMesh.Utils = {
         Params: TextureMesh.Params,
         createEmpty: createEmpty,
@@ -113,11 +113,11 @@ var TextureMesh;
         var counts = { drawCount: textureMesh.vertexCount, vertexCount: textureMesh.vertexCount, groupCount: groupCount, instanceCount: instanceCount };
         var invariantBoundingSphere = geometry_1.Sphere3D.clone(textureMesh.boundingSphere);
         var boundingSphere = (0, util_1.calculateTransformBoundingSphere)(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ dGeometryType: mol_util_1.ValueCell.create('textureMesh'), uGeoTexDim: textureMesh.geoTextureDim, tPosition: textureMesh.vertexTexture, tGroup: textureMesh.groupTexture, tNormal: textureMesh.normalTexture, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), marker), overpaint), transparency), substance), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { uDoubleSided: mol_util_1.ValueCell.create(props.doubleSided), dFlatShaded: mol_util_1.ValueCell.create(props.flatShaded), dFlipSided: mol_util_1.ValueCell.create(props.flipSided), dIgnoreLight: mol_util_1.ValueCell.create(props.ignoreLight), dXrayShaded: mol_util_1.ValueCell.create(props.xrayShaded), uBumpFrequency: mol_util_1.ValueCell.create(props.bumpFrequency), uBumpAmplitude: mol_util_1.ValueCell.create(props.bumpAmplitude), meta: mol_util_1.ValueCell.create(textureMesh.meta) });
+        return tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({ dGeometryType: mol_util_1.ValueCell.create('textureMesh'), uGeoTexDim: textureMesh.geoTextureDim, tPosition: textureMesh.vertexTexture, tGroup: textureMesh.groupTexture, tNormal: textureMesh.normalTexture, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), marker), overpaint), transparency), substance), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { uDoubleSided: mol_util_1.ValueCell.create(props.doubleSided), dFlatShaded: mol_util_1.ValueCell.create(props.flatShaded), dFlipSided: mol_util_1.ValueCell.create(props.flipSided), dIgnoreLight: mol_util_1.ValueCell.create(props.ignoreLight), dXrayShaded: mol_util_1.ValueCell.create(props.xrayShaded), uBumpFrequency: mol_util_1.ValueCell.create(props.bumpFrequency), uBumpAmplitude: mol_util_1.ValueCell.create(props.bumpAmplitude), meta: mol_util_1.ValueCell.create(textureMesh.meta) });
     }
     function createValuesSimple(textureMesh, props, colorValue, sizeValue, transform) {
         var s = base_1.BaseGeometry.createSimple(colorValue, sizeValue, transform);
-        var p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(TextureMesh.Params)), props);
+        var p = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(TextureMesh.Params)), props);
         return createValues(textureMesh, s.transform, s.locationIterator, s.theme, p);
     }
     function updateValues(values, props) {

package/lib/commonjs/mol-geo/primitive/circle.js

@@ -14,7 +14,7 @@ exports.DefaultCircleProps = {
     thetaLength: Math.PI * 2
 };
 function Circle(props) {
-    var _a = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.DefaultCircleProps), props), radius = _a.radius, segments = _a.segments, thetaStart = _a.thetaStart, thetaLength = _a.thetaLength;
+    var _a = tslib_1.__assign(tslib_1.__assign({}, exports.DefaultCircleProps), props), radius = _a.radius, segments = _a.segments, thetaStart = _a.thetaStart, thetaLength = _a.thetaLength;
     var isFull = thetaLength === Math.PI * 2;
     var count = isFull ? segments + 1 : segments + 2;
     var vertices = new Float32Array(count * 3);

package/lib/commonjs/mol-geo/primitive/cylinder.js

@@ -21,7 +21,7 @@ exports.DefaultCylinderProps = {
     thetaLength: Math.PI * 2
 };
 function Cylinder(props) {
-    var _a = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.DefaultCylinderProps), props), radiusTop = _a.radiusTop, radiusBottom = _a.radiusBottom, height = _a.height, radialSegments = _a.radialSegments, heightSegments = _a.heightSegments, topCap = _a.topCap, bottomCap = _a.bottomCap, thetaStart = _a.thetaStart, thetaLength = _a.thetaLength;
+    var _a = tslib_1.__assign(tslib_1.__assign({}, exports.DefaultCylinderProps), props), radiusTop = _a.radiusTop, radiusBottom = _a.radiusBottom, height = _a.height, radialSegments = _a.radialSegments, heightSegments = _a.heightSegments, topCap = _a.topCap, bottomCap = _a.bottomCap, thetaStart = _a.thetaStart, thetaLength = _a.thetaLength;
     // buffers
     var indices = [];
     var vertices = [];

package/lib/commonjs/mol-geo/primitive/polyhedron.js

@@ -15,7 +15,7 @@ exports.DefaultPolyhedronProps = {
     detail: 0
 };
 function Polyhedron(_vertices, _indices, props) {
-    var _a = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.DefaultPolyhedronProps), props), radius = _a.radius, detail = _a.detail;
+    var _a = tslib_1.__assign(tslib_1.__assign({}, exports.DefaultPolyhedronProps), props), radius = _a.radius, detail = _a.detail;
     var builder = createBuilder();
     var vertices = builder.vertices, indices = builder.indices;
     // the subdivision creates the vertex buffer data

package/lib/commonjs/mol-geo/primitive/prism.js

@@ -24,7 +24,7 @@ function Prism(points, props) {
     var sideCount = points.length / 3;
     if (sideCount < 3)
         throw new Error('need at least 3 points to build a prism');
-    var _a = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.DefaultPrismProps), props), height = _a.height, topCap = _a.topCap, bottomCap = _a.bottomCap;
+    var _a = tslib_1.__assign(tslib_1.__assign({}, exports.DefaultPrismProps), props), height = _a.height, topCap = _a.topCap, bottomCap = _a.bottomCap;
     var triangleCount = sideCount * 2;
     var vertexCount = sideCount * 4;
     var capCount = (topCap ? 1 : 0) + (bottomCap ? 1 : 0);

package/lib/commonjs/mol-geo/primitive/star.js

@@ -18,7 +18,7 @@ exports.DefaultStarProps = {
 var op = linear_algebra_1.Vec3.zero(), on = linear_algebra_1.Vec3.zero();
 var a = linear_algebra_1.Vec3.zero(), b = linear_algebra_1.Vec3.zero(), c = linear_algebra_1.Vec3.zero();
 function Star(props) {
-    var _a = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.DefaultStarProps), props), outerRadius = _a.outerRadius, innerRadius = _a.innerRadius, thickness = _a.thickness, pointCount = _a.pointCount;
+    var _a = tslib_1.__assign(tslib_1.__assign({}, exports.DefaultStarProps), props), outerRadius = _a.outerRadius, innerRadius = _a.innerRadius, thickness = _a.thickness, pointCount = _a.pointCount;
     var triangleCount = pointCount * 2 * 2;
     var builder = (0, primitive_1.PrimitiveBuilder)(triangleCount);
     var innerPoints = new Float32Array(pointCount * 2);

package/lib/commonjs/mol-geo/primitive/torus.js

@@ -17,7 +17,7 @@ exports.DefaultTorusProps = {
     arc: Math.PI * 2,
 };
 function Torus(props) {
-    var _a = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.DefaultTorusProps), props), radius = _a.radius, tube = _a.tube, radialSegments = _a.radialSegments, tubularSegments = _a.tubularSegments, arc = _a.arc;
+    var _a = tslib_1.__assign(tslib_1.__assign({}, exports.DefaultTorusProps), props), radius = _a.radius, tube = _a.tube, radialSegments = _a.radialSegments, tubularSegments = _a.tubularSegments, arc = _a.arc;
     // buffers
     var indices = [];
     var vertices = [];

package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js

@@ -13,7 +13,7 @@ var tables_1 = require("./tables");
 var mol_util_1 = require("../../../mol-util");
 var builder_1 = require("./builder");
 function getInputParams(params) {
-    return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, params), { bottomLeft: (0, mol_util_1.defaults)(params.bottomLeft, [0, 0, 0]), topRight: (0, mol_util_1.defaults)(params.topRight, params.scalarField.space.dimensions) });
+    return tslib_1.__assign(tslib_1.__assign({}, params), { bottomLeft: (0, mol_util_1.defaults)(params.bottomLeft, [0, 0, 0]), topRight: (0, mol_util_1.defaults)(params.topRight, params.scalarField.space.dimensions) });
 }
 function getExtent(inputParams) {
     return {
@@ -24,9 +24,9 @@ function getExtent(inputParams) {
 }
 function computeMarchingCubesMesh(params, mesh) {
     var _this = this;
-    return mol_task_1.Task.create('Marching Cubes Mesh', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+    return mol_task_1.Task.create('Marching Cubes Mesh', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
         var inputParams, _a, dX, dY, dZ, vertexChunkSize, builder;
-        return (0, tslib_1.__generator)(this, function (_b) {
+        return tslib_1.__generator(this, function (_b) {
             switch (_b.label) {
                 case 0:
                     inputParams = getInputParams(params);
@@ -44,9 +44,9 @@ function computeMarchingCubesMesh(params, mesh) {
 exports.computeMarchingCubesMesh = computeMarchingCubesMesh;
 function computeMarchingCubesLines(params, lines) {
     var _this = this;
-    return mol_task_1.Task.create('Marching Cubes Lines', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+    return mol_task_1.Task.create('Marching Cubes Lines', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
         var inputParams, _a, dX, dY, dZ, vertexChunkSize, builder;
-        return (0, tslib_1.__generator)(this, function (_b) {
+        return tslib_1.__generator(this, function (_b) {
             switch (_b.label) {
                 case 0:
                     inputParams = getInputParams(params);
@@ -82,9 +82,9 @@ var MarchingCubesComputation = /** @class */ (function () {
         this.sliceSize = (this.maxX - this.minX) * (this.maxY - this.minY);
     }
     MarchingCubesComputation.prototype.doSlices = function () {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var done, k;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         done = 0;
@@ -119,8 +119,8 @@ var MarchingCubesComputation = /** @class */ (function () {
         this.state.clearEdgeVertexIndexSlice(k);
     };
     MarchingCubesComputation.prototype.run = function () {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-            return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0: return [4 /*yield*/, this.doSlices()];
                     case 1: