molstar 3.3.1 → 3.6.0

package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js

@@ -26,7 +26,7 @@ exports.StructureMeasurementParams = {
 };
 var DefaultStructureMeasurementOptions = param_definition_1.ParamDefinition.getDefaultValues(exports.StructureMeasurementParams);
 var StructureMeasurementManager = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(StructureMeasurementManager, _super);
+    tslib_1.__extends(StructureMeasurementManager, _super);
     function StructureMeasurementManager(plugin) {
         var _this = _super.call(this, { labels: [], distances: [], angles: [], dihedrals: [], orientations: [], planes: [], options: DefaultStructureMeasurementOptions }) || this;
         _this.plugin = plugin;
@@ -57,9 +57,9 @@ var StructureMeasurementManager = /** @class */ (function (_super) {
         return builder.toRoot().group(transforms_1.StateTransforms.Misc.CreateGroup, { label: "Measurements" }, { tags: exports.MeasurementGroupTag });
     };
     StructureMeasurementManager.prototype.setOptions = function (options) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var update, _i, _a, cell, _b, _c, cell, _d, _e, cell, _f, _g, cell;
-            return (0, tslib_1.__generator)(this, function (_h) {
+            return tslib_1.__generator(this, function (_h) {
                 switch (_h.label) {
                     case 0:
                         if (this.updateState({ options: options }))
@@ -95,9 +95,9 @@ var StructureMeasurementManager = /** @class */ (function (_super) {
         });
     };
     StructureMeasurementManager.prototype.addDistance = function (a, b, options) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var cellA, cellB, dependsOn, update, state;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         cellA = this.plugin.helpers.substructureParent.get(a.structure);
@@ -116,7 +116,7 @@ var StructureMeasurementManager = /** @class */ (function (_super) {
                             isTransitive: true,
                             label: 'Distance'
                         }, { dependsOn: dependsOn, tags: options === null || options === void 0 ? void 0 : options.selectionTags })
-                            .apply(transforms_1.StateTransforms.Representation.StructureSelectionsDistance3D, (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ customText: (options === null || options === void 0 ? void 0 : options.customText) || '', unitLabel: this.state.options.distanceUnitLabel, textColor: this.state.options.textColor }, options === null || options === void 0 ? void 0 : options.lineParams), options === null || options === void 0 ? void 0 : options.labelParams), options === null || options === void 0 ? void 0 : options.visualParams), { tags: options === null || options === void 0 ? void 0 : options.reprTags });
+                            .apply(transforms_1.StateTransforms.Representation.StructureSelectionsDistance3D, tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({ customText: (options === null || options === void 0 ? void 0 : options.customText) || '', unitLabel: this.state.options.distanceUnitLabel, textColor: this.state.options.textColor }, options === null || options === void 0 ? void 0 : options.lineParams), options === null || options === void 0 ? void 0 : options.labelParams), options === null || options === void 0 ? void 0 : options.visualParams), { tags: options === null || options === void 0 ? void 0 : options.reprTags });
                         state = this.plugin.state.data;
                         return [4 /*yield*/, commands_1.PluginCommands.State.Update(this.plugin, { state: state, tree: update, options: { doNotLogTiming: true } })];
                     case 1:
@@ -127,9 +127,9 @@ var StructureMeasurementManager = /** @class */ (function (_super) {
         });
     };
     StructureMeasurementManager.prototype.addAngle = function (a, b, c, options) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var cellA, cellB, cellC, dependsOn, update, state;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         cellA = this.plugin.helpers.substructureParent.get(a.structure);
@@ -151,7 +151,7 @@ var StructureMeasurementManager = /** @class */ (function (_super) {
                             isTransitive: true,
                             label: 'Angle'
                         }, { dependsOn: dependsOn, tags: options === null || options === void 0 ? void 0 : options.selectionTags })
-                            .apply(transforms_1.StateTransforms.Representation.StructureSelectionsAngle3D, (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ customText: (options === null || options === void 0 ? void 0 : options.customText) || '', textColor: this.state.options.textColor }, options === null || options === void 0 ? void 0 : options.lineParams), options === null || options === void 0 ? void 0 : options.labelParams), options === null || options === void 0 ? void 0 : options.visualParams), { tags: options === null || options === void 0 ? void 0 : options.reprTags });
+                            .apply(transforms_1.StateTransforms.Representation.StructureSelectionsAngle3D, tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({ customText: (options === null || options === void 0 ? void 0 : options.customText) || '', textColor: this.state.options.textColor }, options === null || options === void 0 ? void 0 : options.lineParams), options === null || options === void 0 ? void 0 : options.labelParams), options === null || options === void 0 ? void 0 : options.visualParams), { tags: options === null || options === void 0 ? void 0 : options.reprTags });
                         state = this.plugin.state.data;
                         return [4 /*yield*/, commands_1.PluginCommands.State.Update(this.plugin, { state: state, tree: update, options: { doNotLogTiming: true } })];
                     case 1:
@@ -162,9 +162,9 @@ var StructureMeasurementManager = /** @class */ (function (_super) {
         });
     };
     StructureMeasurementManager.prototype.addDihedral = function (a, b, c, d, options) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var cellA, cellB, cellC, cellD, dependsOn, update, state;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         cellA = this.plugin.helpers.substructureParent.get(a.structure);
@@ -189,7 +189,7 @@ var StructureMeasurementManager = /** @class */ (function (_super) {
                             isTransitive: true,
                             label: 'Dihedral'
                         }, { dependsOn: dependsOn, tags: options === null || options === void 0 ? void 0 : options.selectionTags })
-                            .apply(transforms_1.StateTransforms.Representation.StructureSelectionsDihedral3D, (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ customText: (options === null || options === void 0 ? void 0 : options.customText) || '', textColor: this.state.options.textColor }, options === null || options === void 0 ? void 0 : options.lineParams), options === null || options === void 0 ? void 0 : options.labelParams), options === null || options === void 0 ? void 0 : options.visualParams), { tags: options === null || options === void 0 ? void 0 : options.reprTags });
+                            .apply(transforms_1.StateTransforms.Representation.StructureSelectionsDihedral3D, tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({ customText: (options === null || options === void 0 ? void 0 : options.customText) || '', textColor: this.state.options.textColor }, options === null || options === void 0 ? void 0 : options.lineParams), options === null || options === void 0 ? void 0 : options.labelParams), options === null || options === void 0 ? void 0 : options.visualParams), { tags: options === null || options === void 0 ? void 0 : options.reprTags });
                         state = this.plugin.state.data;
                         return [4 /*yield*/, commands_1.PluginCommands.State.Update(this.plugin, { state: state, tree: update, options: { doNotLogTiming: true } })];
                     case 1:
@@ -200,9 +200,9 @@ var StructureMeasurementManager = /** @class */ (function (_super) {
         });
     };
     StructureMeasurementManager.prototype.addLabel = function (a, options) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var cellA, dependsOn, update, state;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         cellA = this.plugin.helpers.substructureParent.get(a.structure);
@@ -218,7 +218,7 @@ var StructureMeasurementManager = /** @class */ (function (_super) {
                             isTransitive: true,
                             label: 'Label'
                         }, { dependsOn: dependsOn, tags: options === null || options === void 0 ? void 0 : options.selectionTags })
-                            .apply(transforms_1.StateTransforms.Representation.StructureSelectionsLabel3D, (0, tslib_1.__assign)((0, tslib_1.__assign)({ textColor: this.state.options.textColor }, options === null || options === void 0 ? void 0 : options.labelParams), options === null || options === void 0 ? void 0 : options.visualParams), { tags: options === null || options === void 0 ? void 0 : options.reprTags });
+                            .apply(transforms_1.StateTransforms.Representation.StructureSelectionsLabel3D, tslib_1.__assign(tslib_1.__assign({ textColor: this.state.options.textColor }, options === null || options === void 0 ? void 0 : options.labelParams), options === null || options === void 0 ? void 0 : options.visualParams), { tags: options === null || options === void 0 ? void 0 : options.reprTags });
                         state = this.plugin.state.data;
                         return [4 /*yield*/, commands_1.PluginCommands.State.Update(this.plugin, { state: state, tree: update, options: { doNotLogTiming: true } })];
                     case 1:
@@ -229,9 +229,9 @@ var StructureMeasurementManager = /** @class */ (function (_super) {
         });
     };
     StructureMeasurementManager.prototype.addOrientation = function (locis) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var selections, dependsOn, i, il, l, cell, update, state;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         selections = [];
@@ -264,9 +264,9 @@ var StructureMeasurementManager = /** @class */ (function (_super) {
         });
     };
     StructureMeasurementManager.prototype.addPlane = function (locis) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var selections, dependsOn, i, il, l, cell, update, state;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         selections = [];
@@ -299,9 +299,9 @@ var StructureMeasurementManager = /** @class */ (function (_super) {
         });
     };
     StructureMeasurementManager.prototype.addOrderLabels = function (locis) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var update, current, _i, current_1, obj, order, _a, locis_1, loci, cell, dependsOn, state;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         update = this.getGroup();

package/lib/commonjs/mol-plugin-state/manager/structure/selection.js

@@ -24,7 +24,7 @@ var util_1 = require("../../../mol-data/util");
 var boundaryHelper = new boundary_helper_1.BoundaryHelper('98');
 var HISTORY_CAPACITY = 24;
 var StructureSelectionManager = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(StructureSelectionManager, _super);
+    tslib_1.__extends(StructureSelectionManager, _super);
     function StructureSelectionManager(plugin) {
         var _this = _super.call(this, { entries: new Map(), additionsHistory: [], stats: SelectionStats() }) || this;
         _this.plugin = plugin;
@@ -464,9 +464,9 @@ var StructureSelectionManager = /** @class */ (function (_super) {
     StructureSelectionManager.prototype.fromSelectionQuery = function (modifier, query, applyGranularity) {
         var _this = this;
         if (applyGranularity === void 0) { applyGranularity = true; }
-        this.plugin.runTask(mol_task_1.Task.create('Structure Selection', function (runtime) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+        this.plugin.runTask(mol_task_1.Task.create('Structure Selection', function (runtime) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
             var _i, _a, s, loci;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         _i = 0, _a = this.applicableStructures;

package/lib/commonjs/mol-plugin-state/manager/volume/hierarchy.js

@@ -13,7 +13,7 @@ var hierarchy_state_1 = require("./hierarchy-state");
 var volume_representation_params_1 = require("../../helpers/volume-representation-params");
 var transforms_1 = require("../../transforms");
 var VolumeHierarchyManager = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(VolumeHierarchyManager, _super);
+    tslib_1.__extends(VolumeHierarchyManager, _super);
     function VolumeHierarchyManager(plugin) {
         var _this = _super.call(this) || this;
         _this.plugin = plugin;

package/lib/commonjs/mol-plugin-state/objects.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
@@ -23,6 +23,8 @@ import { CubeFile } from '../mol-io/reader/cube/parser';
 import { DxFile } from '../mol-io/reader/dx/parser';
 import { Color } from '../mol-util/color/color';
 import { Asset } from '../mol-util/assets';
+import { PrmtopFile } from '../mol-io/reader/prmtop/parser';
+import { TopFile } from '../mol-io/reader/top/parser';
 export declare type TypeClass = 'root' | 'data' | 'prop';
 export declare namespace PluginStateObject {
     export type Any = StateObject<any, TypeInfo>;
@@ -313,6 +315,50 @@ export declare namespace PluginStateObject {
         };
         export class Psf extends Psf_base {
         }
+        const Prmtop_base: {
+            new (data: PrmtopFile, props?: {
+                label: string;
+                description?: string | undefined;
+            } | undefined): {
+                id: import("../mol-util/uuid").UUID;
+                type: TypeInfo;
+                label: string;
+                description?: string | undefined;
+                data: PrmtopFile;
+            };
+            type: TypeInfo;
+            is(obj?: StateObject<any, StateObject.Type<any>> | undefined): obj is {
+                id: import("../mol-util/uuid").UUID;
+                type: TypeInfo;
+                label: string;
+                description?: string | undefined;
+                data: PrmtopFile;
+            };
+        };
+        export class Prmtop extends Prmtop_base {
+        }
+        const Top_base: {
+            new (data: TopFile, props?: {
+                label: string;
+                description?: string | undefined;
+            } | undefined): {
+                id: import("../mol-util/uuid").UUID;
+                type: TypeInfo;
+                label: string;
+                description?: string | undefined;
+                data: TopFile;
+            };
+            type: TypeInfo;
+            is(obj?: StateObject<any, StateObject.Type<any>> | undefined): obj is {
+                id: import("../mol-util/uuid").UUID;
+                type: TypeInfo;
+                label: string;
+                description?: string | undefined;
+                data: TopFile;
+            };
+        };
+        export class Top extends Top_base {
+        }
         const Ply_base: {
             new (data: PlyFile, props?: {
                 label: string;

package/lib/commonjs/mol-plugin-state/objects.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
@@ -21,15 +21,15 @@ var PluginStateObject;
     }
     PluginStateObject.isBehavior = isBehavior;
     function CreateRepresentation3D(type) {
-        return PluginStateObject.Create((0, tslib_1.__assign)((0, tslib_1.__assign)({}, type), { typeClass: 'Representation3D' }));
+        return PluginStateObject.Create(tslib_1.__assign(tslib_1.__assign({}, type), { typeClass: 'Representation3D' }));
     }
     PluginStateObject.CreateRepresentation3D = CreateRepresentation3D;
     function CreateBehavior(type) {
-        return PluginStateObject.Create((0, tslib_1.__assign)((0, tslib_1.__assign)({}, type), { typeClass: 'Behavior' }));
+        return PluginStateObject.Create(tslib_1.__assign(tslib_1.__assign({}, type), { typeClass: 'Behavior' }));
     }
     PluginStateObject.CreateBehavior = CreateBehavior;
     var Root = /** @class */ (function (_super) {
-        (0, tslib_1.__extends)(Root, _super);
+        tslib_1.__extends(Root, _super);
         function Root() {
             return _super !== null && _super.apply(this, arguments) || this;
         }
@@ -37,7 +37,7 @@ var PluginStateObject;
     }(PluginStateObject.Create({ name: 'Root', typeClass: 'Root' })));
     PluginStateObject.Root = Root;
     var Group = /** @class */ (function (_super) {
-        (0, tslib_1.__extends)(Group, _super);
+        tslib_1.__extends(Group, _super);
         function Group() {
             return _super !== null && _super.apply(this, arguments) || this;
         }
@@ -47,7 +47,7 @@ var PluginStateObject;
     var Data;
     (function (Data) {
         var String = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(String, _super);
+            tslib_1.__extends(String, _super);
             function String() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -55,7 +55,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'String Data', typeClass: 'Data', })));
         Data.String = String;
         var Binary = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Binary, _super);
+            tslib_1.__extends(Binary, _super);
             function Binary() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -63,7 +63,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'Binary Data', typeClass: 'Data' })));
         Data.Binary = Binary;
         var Blob = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Blob, _super);
+            tslib_1.__extends(Blob, _super);
             function Blob() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -74,7 +74,7 @@ var PluginStateObject;
     var Format;
     (function (Format) {
         var Json = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Json, _super);
+            tslib_1.__extends(Json, _super);
             function Json() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -82,7 +82,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'JSON Data', typeClass: 'Data' })));
         Format.Json = Json;
         var Cif = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Cif, _super);
+            tslib_1.__extends(Cif, _super);
             function Cif() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -90,7 +90,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'CIF File', typeClass: 'Data' })));
         Format.Cif = Cif;
         var Cube = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Cube, _super);
+            tslib_1.__extends(Cube, _super);
             function Cube() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -98,15 +98,31 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'Cube File', typeClass: 'Data' })));
         Format.Cube = Cube;
         var Psf = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Psf, _super);
+            tslib_1.__extends(Psf, _super);
             function Psf() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
             return Psf;
         }(PluginStateObject.Create({ name: 'PSF File', typeClass: 'Data' })));
         Format.Psf = Psf;
+        var Prmtop = /** @class */ (function (_super) {
+            tslib_1.__extends(Prmtop, _super);
+            function Prmtop() {
+                return _super !== null && _super.apply(this, arguments) || this;
+            }
+            return Prmtop;
+        }(PluginStateObject.Create({ name: 'PRMTOP File', typeClass: 'Data' })));
+        Format.Prmtop = Prmtop;
+        var Top = /** @class */ (function (_super) {
+            tslib_1.__extends(Top, _super);
+            function Top() {
+                return _super !== null && _super.apply(this, arguments) || this;
+            }
+            return Top;
+        }(PluginStateObject.Create({ name: 'TOP File', typeClass: 'Data' })));
+        Format.Top = Top;
         var Ply = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Ply, _super);
+            tslib_1.__extends(Ply, _super);
             function Ply() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -114,7 +130,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'PLY File', typeClass: 'Data' })));
         Format.Ply = Ply;
         var Ccp4 = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Ccp4, _super);
+            tslib_1.__extends(Ccp4, _super);
             function Ccp4() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -122,7 +138,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'CCP4/MRC/MAP File', typeClass: 'Data' })));
         Format.Ccp4 = Ccp4;
         var Dsn6 = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Dsn6, _super);
+            tslib_1.__extends(Dsn6, _super);
             function Dsn6() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -130,7 +146,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'DSN6/BRIX File', typeClass: 'Data' })));
         Format.Dsn6 = Dsn6;
         var Dx = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Dx, _super);
+            tslib_1.__extends(Dx, _super);
             function Dx() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -138,7 +154,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'DX File', typeClass: 'Data' })));
         Format.Dx = Dx;
         var Blob = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Blob, _super);
+            tslib_1.__extends(Blob, _super);
             function Blob() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -149,7 +165,7 @@ var PluginStateObject;
     var Molecule;
     (function (Molecule) {
         var Coordinates = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Coordinates, _super);
+            tslib_1.__extends(Coordinates, _super);
             function Coordinates() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -157,7 +173,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'Coordinates', typeClass: 'Object' })));
         Molecule.Coordinates = Coordinates;
         var Topology = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Topology, _super);
+            tslib_1.__extends(Topology, _super);
             function Topology() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -165,7 +181,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'Topology', typeClass: 'Object' })));
         Molecule.Topology = Topology;
         var Model = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Model, _super);
+            tslib_1.__extends(Model, _super);
             function Model() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -173,7 +189,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'Model', typeClass: 'Object' })));
         Molecule.Model = Model;
         var Trajectory = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Trajectory, _super);
+            tslib_1.__extends(Trajectory, _super);
             function Trajectory() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -181,7 +197,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'Trajectory', typeClass: 'Object' })));
         Molecule.Trajectory = Trajectory;
         var Structure = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Structure, _super);
+            tslib_1.__extends(Structure, _super);
             function Structure() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -190,7 +206,7 @@ var PluginStateObject;
         Molecule.Structure = Structure;
         (function (Structure) {
             var Representation3D = /** @class */ (function (_super) {
-                (0, tslib_1.__extends)(Representation3D, _super);
+                tslib_1.__extends(Representation3D, _super);
                 function Representation3D() {
                     return _super !== null && _super.apply(this, arguments) || this;
                 }
@@ -198,7 +214,7 @@ var PluginStateObject;
             }(CreateRepresentation3D({ name: 'Structure 3D' })));
             Structure.Representation3D = Representation3D;
             var Representation3DState = /** @class */ (function (_super) {
-                (0, tslib_1.__extends)(Representation3DState, _super);
+                tslib_1.__extends(Representation3DState, _super);
                 function Representation3DState() {
                     return _super !== null && _super.apply(this, arguments) || this;
                 }
@@ -206,7 +222,7 @@ var PluginStateObject;
             }(PluginStateObject.Create({ name: 'Structure 3D State', typeClass: 'Object' })));
             Structure.Representation3DState = Representation3DState;
             var Selections = /** @class */ (function (_super) {
-                (0, tslib_1.__extends)(Selections, _super);
+                tslib_1.__extends(Selections, _super);
                 function Selections() {
                     return _super !== null && _super.apply(this, arguments) || this;
                 }
@@ -218,7 +234,7 @@ var PluginStateObject;
     var Volume;
     (function (Volume) {
         var Data = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Data, _super);
+            tslib_1.__extends(Data, _super);
             function Data() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -226,7 +242,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'Volume', typeClass: 'Object' })));
         Volume.Data = Data;
         var Lazy = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Lazy, _super);
+            tslib_1.__extends(Lazy, _super);
             function Lazy() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -234,7 +250,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'Lazy Volume', typeClass: 'Object' })));
         Volume.Lazy = Lazy;
         var Representation3D = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Representation3D, _super);
+            tslib_1.__extends(Representation3D, _super);
             function Representation3D() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -245,7 +261,7 @@ var PluginStateObject;
     var Shape;
     (function (Shape) {
         var Provider = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Provider, _super);
+            tslib_1.__extends(Provider, _super);
             function Provider() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }
@@ -253,7 +269,7 @@ var PluginStateObject;
         }(PluginStateObject.Create({ name: 'Shape Provider', typeClass: 'Object' })));
         Shape.Provider = Provider;
         var Representation3D = /** @class */ (function (_super) {
-            (0, tslib_1.__extends)(Representation3D, _super);
+            tslib_1.__extends(Representation3D, _super);
             function Representation3D() {
                 return _super !== null && _super.apply(this, arguments) || this;
             }

package/lib/commonjs/mol-plugin-state/transforms/data.d.ts

@@ -16,6 +16,8 @@ export { ParseBlob };
 export { ParseCif };
 export { ParseCube };
 export { ParsePsf };
+export { ParsePrmtop };
+export { ParseTop };
 export { ParsePly };
 export { ParseCcp4 };
 export { ParseDsn6 };
@@ -64,6 +66,10 @@ declare type ParseCube = typeof ParseCube;
 declare const ParseCube: StateTransformer<SO.Data.String, SO.Format.Cube, PD.Normalize<{}>>;
 declare type ParsePsf = typeof ParsePsf;
 declare const ParsePsf: StateTransformer<SO.Data.String, SO.Format.Psf, PD.Normalize<{}>>;
+declare type ParsePrmtop = typeof ParsePrmtop;
+declare const ParsePrmtop: StateTransformer<SO.Data.String, SO.Format.Prmtop, PD.Normalize<{}>>;
+declare type ParseTop = typeof ParseTop;
+declare const ParseTop: StateTransformer<SO.Data.String, SO.Format.Top, PD.Normalize<{}>>;
 declare type ParsePly = typeof ParsePly;
 declare const ParsePly: StateTransformer<SO.Data.String, SO.Format.Ply, PD.Normalize<{}>>;
 declare type ParseCcp4 = typeof ParseCcp4;