molstar 2.3.9 → 2.4.0

package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts

@@ -11,7 +11,7 @@ export declare const PolymerBackboneCylinderParams: {
     sizeFactor: PD.Numeric;
     radialSegments: PD.Numeric;
     tryUseImpostor: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     sizeAspectRatio: PD.Numeric;
     doubleSided: PD.BooleanParam;
@@ -27,7 +27,7 @@ export declare function PolymerBackboneCylinderVisual(materialId: number, struct
     sizeFactor: PD.Numeric;
     radialSegments: PD.Numeric;
     tryUseImpostor: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     sizeAspectRatio: PD.Numeric;
     doubleSided: PD.BooleanParam;

package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts

@@ -11,7 +11,7 @@ export declare const PolymerBackboneSphereParams: {
     sizeFactor: PD.Numeric;
     detail: PD.Numeric;
     tryUseImpostor: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
@@ -26,7 +26,7 @@ export declare function PolymerBackboneSphereVisual(materialId: number, structur
     sizeFactor: PD.Numeric;
     detail: PD.Numeric;
     tryUseImpostor: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;

package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts

@@ -14,7 +14,7 @@ export declare const DefaultPolymerDirectionWedgeProps: PD.Values<{
 export declare type PolymerDirectionWedgeProps = typeof DefaultPolymerDirectionWedgeProps;
 export declare const PolymerDirectionParams: {
     sizeFactor: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;

package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts

@@ -17,7 +17,7 @@ export declare type PolymerGapCylinderProps = typeof DefaultPolymerGapCylinderPr
 export declare const PolymerGapParams: {
     sizeFactor: PD.Numeric;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;

package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts

@@ -10,7 +10,7 @@ export declare const PolymerTraceMeshParams: {
     aspectRatio: PD.Numeric;
     arrowFactor: PD.Numeric;
     tubularHelices: PD.BooleanParam;
-    helixProfile: PD.Select<"square" | "elliptical" | "rounded">;
+    helixProfile: PD.Select<"elliptical" | "rounded" | "square">;
     detail: PD.Numeric;
     linearSegments: PD.Numeric;
     radialSegments: PD.Numeric;
@@ -20,7 +20,7 @@ export declare const DefaultPolymerTraceMeshProps: PD.Values<{
     aspectRatio: PD.Numeric;
     arrowFactor: PD.Numeric;
     tubularHelices: PD.BooleanParam;
-    helixProfile: PD.Select<"square" | "elliptical" | "rounded">;
+    helixProfile: PD.Select<"elliptical" | "rounded" | "square">;
     detail: PD.Numeric;
     linearSegments: PD.Numeric;
     radialSegments: PD.Numeric;
@@ -31,11 +31,11 @@ export declare const PolymerTraceParams: {
     aspectRatio: PD.Numeric;
     arrowFactor: PD.Numeric;
     tubularHelices: PD.BooleanParam;
-    helixProfile: PD.Select<"square" | "elliptical" | "rounded">;
+    helixProfile: PD.Select<"elliptical" | "rounded" | "square">;
     detail: PD.Numeric;
     linearSegments: PD.Numeric;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;

package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts

@@ -23,7 +23,7 @@ export declare const PolymerTubeParams: {
     detail: PD.Numeric;
     linearSegments: PD.Numeric;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;

package/lib/mol-repr/structure/visual/util/bond.d.ts

@@ -12,27 +12,27 @@ import { Loci } from '../../../../mol-model/loci';
 import { Interval } from '../../../../mol-data/int';
 import { StructureGroup } from './common';
 export declare const BondParams: {
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
-    multipleBonds: PD.Select<"off" | "offset" | "symmetric">;
+    multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
 };
 export declare const DefaultBondProps: PD.Values<{
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
-    multipleBonds: PD.Select<"off" | "offset" | "symmetric">;
+    multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
 }>;
 export declare type BondProps = typeof DefaultBondProps;
 export declare const BondCylinderParams: {
     adjustCylinderLength: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
-    multipleBonds: PD.Select<"off" | "offset" | "symmetric">;
+    multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
@@ -47,11 +47,11 @@ export declare const BondCylinderParams: {
 };
 export declare const DefaultBondCylinderProps: PD.Values<{
     adjustCylinderLength: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
-    multipleBonds: PD.Select<"off" | "offset" | "symmetric">;
+    multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
@@ -66,22 +66,22 @@ export declare const DefaultBondCylinderProps: PD.Values<{
 }>;
 export declare type BondCylinderProps = typeof DefaultBondCylinderProps;
 export declare const BondLineParams: {
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
-    multipleBonds: PD.Select<"off" | "offset" | "symmetric">;
+    multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
 };
 export declare const DefaultBondLineProps: PD.Values<{
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
-    multipleBonds: PD.Select<"off" | "offset" | "symmetric">;
+    multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     aromaticDashCount: PD.Numeric;

package/lib/mol-repr/structure/visual/util/common.d.ts

@@ -29,7 +29,7 @@ export declare const UnitKindInfo: {
     gaussians: {};
 };
 export declare type UnitKind = keyof typeof UnitKindInfo;
-export declare const UnitKindOptions: ["spheres" | "gaussians" | "atomic", string][];
+export declare const UnitKindOptions: ["atomic" | "spheres" | "gaussians", string][];
 export declare function includesUnitKind(unitKinds: UnitKind[], unit: Unit): boolean;
 export declare function getVolumeSliceInfo(box: Box3D, resolution: number, maxCells?: number): {
     area: number;
@@ -48,7 +48,7 @@ export declare function ensureReasonableResolution<T>(box: Box3D, props: {
 } & T & {
     resolution: number;
 };
-export declare function getConformation(unit: Unit): import("../../../../mol-model/structure/model/properties/atomic").AtomicConformation | import("../../../../mol-model/structure/model/properties/coarse").CoarseSphereConformation | import("../../../../mol-model/structure/model/properties/coarse").CoarseGaussianConformation;
+export declare function getConformation(unit: Unit): import("../../../../mol-model/structure/model/properties/coarse").CoarseSphereConformation | import("../../../../mol-model/structure/model/properties/coarse").CoarseGaussianConformation | import("../../../../mol-model/structure/model/properties/atomic").AtomicConformation;
 export declare const CommonSurfaceParams: {
     ignoreHydrogens: PD.BooleanParam;
     traceOnly: PD.BooleanParam;

package/lib/mol-repr/visual.d.ts

@@ -16,6 +16,7 @@ import { Overpaint } from '../mol-theme/overpaint';
 import { Interval } from '../mol-data/int';
 import { Transparency } from '../mol-theme/transparency';
 import { Clipping } from '../mol-theme/clipping';
+import { Geometry } from '../mol-geo/geometry/geometry';
 export interface VisualContext {
     readonly runtime: RuntimeContext;
     readonly webgl?: WebGLContext;
@@ -25,6 +26,7 @@ interface Visual<D, P extends PD.Params> {
     /** Number of addressable groups in all instances of the visual */
     readonly groupCount: number;
     readonly renderObject: GraphicsRenderObject | undefined;
+    readonly geometryVersion: number;
     createOrUpdate: (ctx: VisualContext, theme: Theme, props: PD.Values<P>, data?: D) => Promise<void> | void;
     getLoci: (pickingId: PickingId) => Loci;
     mark: (loci: Loci, action: MarkerAction) => boolean;
@@ -33,26 +35,32 @@ interface Visual<D, P extends PD.Params> {
     setPickable: (pickable: boolean) => void;
     setColorOnly: (colorOnly: boolean) => void;
     setTransform: (matrix?: Mat4, instanceMatrices?: Float32Array | null) => void;
-    setOverpaint: (overpaint: Overpaint) => void;
-    setTransparency: (transparency: Transparency) => void;
+    setOverpaint: (overpaint: Overpaint, webgl?: WebGLContext) => void;
+    setTransparency: (transparency: Transparency, webgl?: WebGLContext) => void;
     setClipping: (clipping: Clipping) => void;
     destroy: () => void;
     mustRecreate?: (data: D, props: PD.Values<P>, webgl?: WebGLContext) => boolean;
 }
 declare namespace Visual {
-    type LociApply = (loci: Loci, apply: (interval: Interval) => boolean, isMarking: boolean) => boolean;
-    function setVisibility(renderObject: GraphicsRenderObject | undefined, visible: boolean): void;
-    function setAlphaFactor(renderObject: GraphicsRenderObject | undefined, alphaFactor: number): void;
-    function setPickable(renderObject: GraphicsRenderObject | undefined, pickable: boolean): void;
-    function setColorOnly(renderObject: GraphicsRenderObject | undefined, colorOnly: boolean): void;
-    type PreviousMark = {
+    export type LociApply = (loci: Loci, apply: (interval: Interval) => boolean, isMarking: boolean) => boolean;
+    export function setVisibility(renderObject: GraphicsRenderObject | undefined, visible: boolean): void;
+    export function setAlphaFactor(renderObject: GraphicsRenderObject | undefined, alphaFactor: number): void;
+    export function setPickable(renderObject: GraphicsRenderObject | undefined, pickable: boolean): void;
+    export function setColorOnly(renderObject: GraphicsRenderObject | undefined, colorOnly: boolean): void;
+    export type PreviousMark = {
         loci: Loci;
         action: MarkerAction;
         status: MarkerInfo['status'];
     };
-    function mark(renderObject: GraphicsRenderObject | undefined, loci: Loci, action: MarkerAction, lociApply: LociApply, previous?: PreviousMark): boolean;
-    function setOverpaint(renderObject: GraphicsRenderObject | undefined, overpaint: Overpaint, lociApply: LociApply, clear: boolean): void;
-    function setTransparency(renderObject: GraphicsRenderObject | undefined, transparency: Transparency, lociApply: LociApply, clear: boolean): void;
-    function setClipping(renderObject: GraphicsRenderObject | undefined, clipping: Clipping, lociApply: LociApply, clear: boolean): void;
-    function setTransform(renderObject: GraphicsRenderObject | undefined, transform?: Mat4, instanceTransforms?: Float32Array | null): void;
+    export function mark(renderObject: GraphicsRenderObject | undefined, loci: Loci, action: MarkerAction, lociApply: LociApply, previous?: PreviousMark): boolean;
+    type SmoothingContext = {
+        geometry: Geometry;
+        props: PD.Values<any>;
+        webgl?: WebGLContext;
+    };
+    export function setOverpaint(renderObject: GraphicsRenderObject | undefined, overpaint: Overpaint, lociApply: LociApply, clear: boolean, smoothing?: SmoothingContext): void;
+    export function setTransparency(renderObject: GraphicsRenderObject | undefined, transparency: Transparency, lociApply: LociApply, clear: boolean, smoothing?: SmoothingContext): void;
+    export function setClipping(renderObject: GraphicsRenderObject | undefined, clipping: Clipping, lociApply: LociApply, clear: boolean): void;
+    export function setTransform(renderObject: GraphicsRenderObject | undefined, transform?: Mat4, instanceTransforms?: Float32Array | null): void;
+    export {};
 }

package/lib/mol-repr/visual.js

@@ -14,6 +14,9 @@ import { Interval } from '../mol-data/int';
 import { createTransparency, clearTransparency, applyTransparencyValue, getTransparencyAverage } from '../mol-geo/geometry/transparency-data';
 import { createClipping, applyClippingGroups, clearClipping } from '../mol-geo/geometry/clipping-data';
 import { getMarkersAverage } from '../mol-geo/geometry/marker-data';
+import { getColorSmoothingProps, hasColorSmoothingProp } from '../mol-geo/geometry/base';
+import { applyMeshOverpaintSmoothing, applyMeshTransparencySmoothing } from '../mol-geo/geometry/mesh/color-smoothing';
+import { applyTextureMeshOverpaintSmoothing, applyTextureMeshTransparencySmoothing } from '../mol-geo/geometry/texture-mesh/color-smoothing';
 export { Visual };
 var Visual;
 (function (Visual) {
@@ -104,10 +107,10 @@ var Visual;
         return changed;
     }
     Visual.mark = mark;
-    function setOverpaint(renderObject, overpaint, lociApply, clear) {
+    function setOverpaint(renderObject, overpaint, lociApply, clear, smoothing) {
         if (!renderObject)
             return;
-        var _a = renderObject.values, tOverpaint = _a.tOverpaint, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
+        var _a = renderObject.values, tOverpaint = _a.tOverpaint, dOverpaintType = _a.dOverpaintType, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
         var count = uGroupCount.ref.value * instanceCount.ref.value;
         // ensure texture has right size
         createOverpaint(overpaint.layers.length ? count : 0, renderObject.values);
@@ -116,7 +119,7 @@ var Visual;
         if (clear)
             clearOverpaint(array, 0, count);
         var _loop_1 = function (i, il) {
-            var _b = overpaint.layers[i], loci = _b.loci, color = _b.color, clear_1 = _b.clear;
+            var _d = overpaint.layers[i], loci = _d.loci, color = _d.color, clear_1 = _d.clear;
             var apply = function (interval) {
                 var start = Interval.start(interval);
                 var end = Interval.end(interval);
@@ -130,12 +133,34 @@ var Visual;
             _loop_1(i, il);
         }
         ValueCell.update(tOverpaint, tOverpaint.ref.value);
+        ValueCell.updateIfChanged(dOverpaintType, 'groupInstance');
+        if (overpaint.layers.length === 0)
+            return;
+        if (smoothing && hasColorSmoothingProp(smoothing.props)) {
+            var geometry = smoothing.geometry, props = smoothing.props, webgl = smoothing.webgl;
+            if (geometry.kind === 'mesh') {
+                var _b = geometry.meta, resolution = _b.resolution, overpaintTexture = _b.overpaintTexture;
+                var csp = getColorSmoothingProps(props.smoothColors, true, resolution);
+                if (csp) {
+                    applyMeshOverpaintSmoothing(renderObject.values, csp.resolution, csp.stride, webgl, overpaintTexture);
+                    geometry.meta.overpaintTexture = renderObject.values.tOverpaintGrid.ref.value;
+                }
+            }
+            else if (webgl && geometry.kind === 'texture-mesh') {
+                var _c = geometry.meta, resolution = _c.resolution, overpaintTexture = _c.overpaintTexture;
+                var csp = getColorSmoothingProps(props.smoothColors, true, resolution);
+                if (csp) {
+                    applyTextureMeshOverpaintSmoothing(renderObject.values, csp.resolution, csp.stride, webgl, overpaintTexture);
+                    geometry.meta.overpaintTexture = renderObject.values.tOverpaintGrid.ref.value;
+                }
+            }
+        }
     }
     Visual.setOverpaint = setOverpaint;
-    function setTransparency(renderObject, transparency, lociApply, clear) {
+    function setTransparency(renderObject, transparency, lociApply, clear, smoothing) {
         if (!renderObject)
             return;
-        var _a = renderObject.values, tTransparency = _a.tTransparency, transparencyAverage = _a.transparencyAverage, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
+        var _a = renderObject.values, tTransparency = _a.tTransparency, dTransparencyType = _a.dTransparencyType, transparencyAverage = _a.transparencyAverage, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
         var count = uGroupCount.ref.value * instanceCount.ref.value;
         // ensure texture has right size and variant
         createTransparency(transparency.layers.length ? count : 0, renderObject.values);
@@ -144,7 +169,7 @@ var Visual;
         if (clear)
             clearTransparency(array, 0, count);
         var _loop_2 = function (i, il) {
-            var _b = transparency.layers[i], loci = _b.loci, value = _b.value;
+            var _d = transparency.layers[i], loci = _d.loci, value = _d.value;
             var apply = function (interval) {
                 var start = Interval.start(interval);
                 var end = Interval.end(interval);
@@ -157,6 +182,28 @@ var Visual;
         }
         ValueCell.update(tTransparency, tTransparency.ref.value);
         ValueCell.updateIfChanged(transparencyAverage, getTransparencyAverage(array, count));
+        ValueCell.updateIfChanged(dTransparencyType, 'groupInstance');
+        if (transparency.layers.length === 0)
+            return;
+        if (smoothing && hasColorSmoothingProp(smoothing.props)) {
+            var geometry = smoothing.geometry, props = smoothing.props, webgl = smoothing.webgl;
+            if (geometry.kind === 'mesh') {
+                var _b = geometry.meta, resolution = _b.resolution, transparencyTexture = _b.transparencyTexture;
+                var csp = getColorSmoothingProps(props.smoothColors, true, resolution);
+                if (csp) {
+                    applyMeshTransparencySmoothing(renderObject.values, csp.resolution, csp.stride, webgl, transparencyTexture);
+                    geometry.meta.transparencyTexture = renderObject.values.tTransparencyGrid.ref.value;
+                }
+            }
+            else if (webgl && geometry.kind === 'texture-mesh') {
+                var _c = geometry.meta, resolution = _c.resolution, transparencyTexture = _c.transparencyTexture;
+                var csp = getColorSmoothingProps(props.smoothColors, true, resolution);
+                if (csp) {
+                    applyTextureMeshTransparencySmoothing(renderObject.values, csp.resolution, csp.stride, webgl, transparencyTexture);
+                    geometry.meta.transparencyTexture = renderObject.values.tTransparencyGrid.ref.value;
+                }
+            }
+        }
     }
     Visual.setTransparency = setTransparency;
     function setClipping(renderObject, clipping, lociApply, clear) {

package/lib/mol-repr/visual.js.map

@@ -1 +1 @@
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package/lib/mol-repr/volume/direct-volume.d.ts

@@ -18,9 +18,9 @@ import { PickingId } from '../../mol-geo/geometry/picking';
 export declare function createDirectVolume2d(ctx: RuntimeContext, webgl: WebGLContext, volume: Volume, directVolume?: DirectVolume): DirectVolume;
 export declare function createDirectVolume3d(ctx: RuntimeContext, webgl: WebGLContext, volume: Volume, directVolume?: DirectVolume): DirectVolume;
 export declare function createDirectVolume(ctx: VisualContext, volume: Volume, theme: Theme, props: PD.Values<DirectVolumeParams>, directVolume?: DirectVolume): Promise<DirectVolume>;
-export declare function getDirectVolumeLoci(pickingId: PickingId, volume: Volume, props: DirectVolumeProps, id: number): Volume.Cell.Loci | {
+export declare function getDirectVolumeLoci(pickingId: PickingId, volume: Volume, props: DirectVolumeProps, id: number): {
     kind: "empty-loci";
-};
+} | Volume.Cell.Loci;
 export declare function eachDirectVolume(loci: Loci, volume: Volume, props: DirectVolumeProps, apply: (interval: Interval) => boolean): boolean;
 export declare const DirectVolumeParams: {
     quality: {

package/lib/mol-repr/volume/registry.d.ts

@@ -91,7 +91,7 @@ export declare namespace VolumeRepresentationRegistry {
                     legend?: import("../../mol-util/legend").Legend | undefined;
                 }) | undefined;
             };
-            dimension: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "x"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "y"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "z">>;
+            dimension: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "y"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "x"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "z">>;
             isoValue: import("../../mol-util/param-definition").ParamDefinition.Conditioned<Readonly<{
                 kind: "absolute";
                 absoluteValue: number;
@@ -114,7 +114,7 @@ export declare namespace VolumeRepresentationRegistry {
                     relativeValue: number;
                 }>, number>;
             }>;
-            interpolation: import("../../mol-util/param-definition").ParamDefinition.Select<"nearest" | "catmulrom" | "mitchell" | "bspline">;
+            interpolation: import("../../mol-util/param-definition").ParamDefinition.Select<"bspline" | "nearest" | "catmulrom" | "mitchell">;
             alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
         }, "slice">;
         'direct-volume': import("./representation").VolumeRepresentationProvider<{

package/lib/mol-repr/volume/representation.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/mol-repr/volume/representation.js

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -42,6 +42,7 @@ export function VolumeVisual(builder, materialId) {
     var currentTheme = Theme.createEmpty();
     var currentVolume;
     var geometry;
+    var geometryVersion = -1;
     var locationIt;
     var positionIt;
     function prepareUpdate(theme, props, volume) {
@@ -113,8 +114,10 @@ export function VolumeVisual(builder, materialId) {
         currentProps = newProps;
         currentTheme = newTheme;
         currentVolume = newVolume;
-        if (newGeometry)
+        if (newGeometry) {
             geometry = newGeometry;
+            geometryVersion += 1;
+        }
     }
     function lociApply(loci, apply) {
         if (isEveryLoci(loci)) {
@@ -127,6 +130,7 @@ export function VolumeVisual(builder, materialId) {
     return {
         get groupCount() { return locationIt ? locationIt.count : 0; },
         get renderObject() { return renderObject; },
+        get geometryVersion() { return geometryVersion; },
         createOrUpdate: function (ctx, theme, props, volume) {
             if (props === void 0) { props = {}; }
             return __awaiter(this, void 0, void 0, function () {
@@ -191,6 +195,7 @@ export function VolumeRepresentation(label, ctx, getParams, visualCtor, getLoci)
     var version = 0;
     var webgl = ctx.webgl;
     var updated = new Subject();
+    var geometryState = new Representation.GeometryState();
     var materialId = getNextMaterialId();
     var renderObjects = [];
     var _state = Representation.createState();
@@ -232,8 +237,11 @@ export function VolumeRepresentation(label, ctx, getParams, visualCtor, getLoci)
                     case 2:
                         // update list of renderObjects
                         renderObjects.length = 0;
-                        if (visual && visual.renderObject)
+                        if (visual && visual.renderObject) {
                             renderObjects.push(visual.renderObject);
+                            geometryState.add(visual.renderObject.id, visual.geometryVersion);
+                        }
+                        geometryState.snapshot();
                         // increment version
                         updated.next(version++);
                         return [2 /*return*/];
@@ -275,6 +283,7 @@ export function VolumeRepresentation(label, ctx, getParams, visualCtor, getLoci)
         get params() { return _params; },
         get state() { return _state; },
         get theme() { return _theme; },
+        get geometryVersion() { return geometryState.version; },
         renderObjects: renderObjects,
         updated: updated,
         createOrUpdate: createOrUpdate,

package/lib/mol-repr/volume/representation.js.map

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