molstar 2.3.9 → 2.4.0

package/lib/mol-geo/geometry/mesh/color-smoothing.js

@@ -5,11 +5,12 @@
  */
 import { createTextureImage } from '../../../mol-gl/renderable/util';
 import { Box3D } from '../../../mol-math/geometry';
+import { lerp } from '../../../mol-math/interpolate';
 import { Vec2, Vec3, Vec4 } from '../../../mol-math/linear-algebra';
 import { getVolumeTexture2dLayout } from '../../../mol-repr/volume/util';
-import { Color } from '../../../mol-util/color';
+import { ValueCell } from '../../../mol-util';
 export function calcMeshColorSmoothing(input, resolution, stride, webgl, texture) {
-    var colorType = input.colorType, vertexCount = input.vertexCount, groupCount = input.groupCount, positionBuffer = input.positionBuffer, transformBuffer = input.transformBuffer, groupBuffer = input.groupBuffer;
+    var colorType = input.colorType, vertexCount = input.vertexCount, groupCount = input.groupCount, positionBuffer = input.positionBuffer, transformBuffer = input.transformBuffer, groupBuffer = input.groupBuffer, itemSize = input.itemSize;
     var isInstanceType = colorType.endsWith('Instance');
     var box = Box3D.fromSphere3D(Box3D(), isInstanceType ? input.boundingSphere : input.invariantBoundingSphere);
     var scaleFactor = 1 / resolution;
@@ -21,7 +22,6 @@ export function calcMeshColorSmoothing(input, resolution, stride, webgl, texture
     var xn = gridDim[0], yn = gridDim[1];
     var _a = getVolumeTexture2dLayout(gridDim), width = _a.width, height = _a.height;
     // console.log({ width, height, dim });
-    var itemSize = 3;
     var data = new Float32Array(width * height * itemSize);
     var count = new Float32Array(width * height);
     var grid = new Uint8Array(width * height * itemSize);
@@ -50,10 +50,7 @@ export function calcMeshColorSmoothing(input, resolution, stride, webgl, texture
             var y = Math.floor(vy);
             var z = Math.floor(vz);
             // group colors
-            var ci = i * groupCount + groupBuffer[j];
-            var r = colors[ci * 3];
-            var g = colors[ci * 3 + 1];
-            var b = colors[ci * 3 + 2];
+            var ci = (i * groupCount + groupBuffer[j]) * itemSize;
             // Extents of grid to consider for this atom
             var begX = Math.max(0, x - p);
             var begY = Math.max(0, y - p);
@@ -75,33 +72,36 @@ export function calcMeshColorSmoothing(input, resolution, stride, webgl, texture
                             continue;
                         var s = p - d;
                         var index = getIndex(xi, yi, zi);
-                        data[index] += r * s;
-                        data[index + 1] += g * s;
-                        data[index + 2] += b * s;
-                        count[index / 3] += s;
+                        for (var k = 0; k < itemSize; ++k) {
+                            data[index + k] += colors[ci + k] * s;
+                        }
+                        count[index / itemSize] += s;
                     }
                 }
             }
         }
     }
     for (var i = 0, il = count.length; i < il; ++i) {
-        var i3 = i * 3;
+        var is = i * itemSize;
         var c = count[i];
-        grid[i3] = Math.round(data[i3] / c);
-        grid[i3 + 1] = Math.round(data[i3 + 1] / c);
-        grid[i3 + 2] = Math.round(data[i3 + 2] / c);
+        for (var k = 0; k < itemSize; ++k) {
+            grid[is + k] = Math.round(data[is + k] / c);
+        }
     }
     var gridTexDim = Vec2.create(width, height);
     var gridTransform = Vec4.create(min[0], min[1], min[2], scaleFactor);
     var type = isInstanceType ? 'volumeInstance' : 'volume';
     if (webgl) {
-        if (!texture)
-            texture = webgl.resources.texture('image-uint8', 'rgb', 'ubyte', 'linear');
+        if (!texture) {
+            var format = itemSize === 4 ? 'rgba' :
+                itemSize === 3 ? 'rgb' : 'alpha';
+            texture = webgl.resources.texture('image-uint8', format, 'ubyte', 'linear');
+        }
         texture.load(textureImage);
         return { kind: 'volume', texture: texture, gridTexDim: gridTexDim, gridDim: gridDim, gridTransform: gridTransform, type: type };
     }
     else {
-        var interpolated = getTrilinearlyInterpolated({ vertexCount: vertexCount, instanceCount: instanceCount, transformBuffer: transformBuffer, positionBuffer: positionBuffer, colorType: type, grid: grid, gridDim: gridDim, gridTexDim: gridTexDim, gridTransform: gridTransform, vertexStride: 3, colorStride: 3 });
+        var interpolated = getTrilinearlyInterpolated({ vertexCount: vertexCount, instanceCount: instanceCount, transformBuffer: transformBuffer, positionBuffer: positionBuffer, colorType: type, grid: grid, gridDim: gridDim, gridTexDim: gridTexDim, gridTransform: gridTransform, vertexStride: 3, colorStride: itemSize, outputStride: itemSize });
         return {
             kind: 'vertex',
             texture: interpolated,
@@ -112,9 +112,14 @@ export function calcMeshColorSmoothing(input, resolution, stride, webgl, texture
 }
 export function getTrilinearlyInterpolated(input) {
     var vertexCount = input.vertexCount, positionBuffer = input.positionBuffer, transformBuffer = input.transformBuffer, grid = input.grid, gridDim = input.gridDim, gridTexDim = input.gridTexDim, gridTransform = input.gridTransform, vertexStride = input.vertexStride, colorStride = input.colorStride;
+    var itemOffset = input.itemOffset || 0;
+    var outputStride = input.outputStride;
+    if (outputStride + itemOffset > colorStride) {
+        throw new Error('outputStride + itemOffset must NOT be larger than colorStride');
+    }
     var isInstanceType = input.colorType.endsWith('Instance');
     var instanceCount = isInstanceType ? input.instanceCount : 1;
-    var image = createTextureImage(Math.max(1, instanceCount * vertexCount), 3, Uint8Array);
+    var image = createTextureImage(Math.max(1, instanceCount * vertexCount), outputStride, Uint8Array);
     var array = image.array;
     var xn = gridDim[0], yn = gridDim[1];
     var width = gridTexDim[0];
@@ -145,23 +150,134 @@ export function getTrilinearlyInterpolated(input) {
             var x0 = v0[0], y0 = v0[1], z0 = v0[2];
             var x1 = v1[0], y1 = v1[1], z1 = v1[2];
             var xd = vd[0], yd = vd[1], zd = vd[2];
-            var s000 = Color.fromArray(grid, getIndex(x0, y0, z0));
-            var s100 = Color.fromArray(grid, getIndex(x1, y0, z0));
-            var s001 = Color.fromArray(grid, getIndex(x0, y0, z1));
-            var s101 = Color.fromArray(grid, getIndex(x1, y0, z1));
-            var s010 = Color.fromArray(grid, getIndex(x0, y1, z0));
-            var s110 = Color.fromArray(grid, getIndex(x1, y1, z0));
-            var s011 = Color.fromArray(grid, getIndex(x0, y1, z1));
-            var s111 = Color.fromArray(grid, getIndex(x1, y1, z1));
-            var s00 = Color.interpolate(s000, s100, xd);
-            var s01 = Color.interpolate(s001, s101, xd);
-            var s10 = Color.interpolate(s010, s110, xd);
-            var s11 = Color.interpolate(s011, s111, xd);
-            var s0 = Color.interpolate(s00, s10, yd);
-            var s1 = Color.interpolate(s01, s11, yd);
-            Color.toArray(Color.interpolate(s0, s1, zd), array, (i * vertexCount + j) * 3);
+            var i000 = getIndex(x0, y0, z0) + itemOffset;
+            var i100 = getIndex(x1, y0, z0) + itemOffset;
+            var i001 = getIndex(x0, y0, z1) + itemOffset;
+            var i101 = getIndex(x1, y0, z1) + itemOffset;
+            var i010 = getIndex(x0, y1, z0) + itemOffset;
+            var i110 = getIndex(x1, y1, z0) + itemOffset;
+            var i011 = getIndex(x0, y1, z1) + itemOffset;
+            var i111 = getIndex(x1, y1, z1) + itemOffset;
+            var o = (i * vertexCount + j) * outputStride;
+            for (var k = 0; k < outputStride; ++k) {
+                var s000 = grid[i000 + k];
+                var s100 = grid[i100 + k];
+                var s001 = grid[i001 + k];
+                var s101 = grid[i101 + k];
+                var s010 = grid[i010 + k];
+                var s110 = grid[i110 + k];
+                var s011 = grid[i011 + k];
+                var s111 = grid[i111 + k];
+                var s00 = lerp(s000, s100, xd);
+                var s01 = lerp(s001, s101, xd);
+                var s10 = lerp(s010, s110, xd);
+                var s11 = lerp(s011, s111, xd);
+                var s0 = lerp(s00, s10, yd);
+                var s1 = lerp(s01, s11, yd);
+                array[o + k] = lerp(s0, s1, zd);
+            }
         }
     }
     return image;
 }
+//
+function isSupportedColorType(x) {
+    return x === 'group' || x === 'groupInstance';
+}
+export function applyMeshColorSmoothing(values, resolution, stride, webgl, colorTexture) {
+    if (!isSupportedColorType(values.dColorType.ref.value))
+        return;
+    var smoothingData = calcMeshColorSmoothing({
+        vertexCount: values.uVertexCount.ref.value,
+        instanceCount: values.uInstanceCount.ref.value,
+        groupCount: values.uGroupCount.ref.value,
+        transformBuffer: values.aTransform.ref.value,
+        instanceBuffer: values.aInstance.ref.value,
+        positionBuffer: values.aPosition.ref.value,
+        groupBuffer: values.aGroup.ref.value,
+        colorData: values.tColor.ref.value,
+        colorType: values.dColorType.ref.value,
+        boundingSphere: values.boundingSphere.ref.value,
+        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
+        itemSize: 3
+    }, resolution, stride, webgl, colorTexture);
+    if (smoothingData.kind === 'volume') {
+        ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
+        ValueCell.update(values.tColorGrid, smoothingData.texture);
+        ValueCell.update(values.uColorTexDim, smoothingData.gridTexDim);
+        ValueCell.update(values.uColorGridDim, smoothingData.gridDim);
+        ValueCell.update(values.uColorGridTransform, smoothingData.gridTransform);
+    }
+    else if (smoothingData.kind === 'vertex') {
+        ValueCell.updateIfChanged(values.dColorType, smoothingData.type);
+        ValueCell.update(values.tColor, smoothingData.texture);
+        ValueCell.update(values.uColorTexDim, smoothingData.texDim);
+    }
+}
+function isSupportedOverpaintType(x) {
+    return x === 'groupInstance';
+}
+export function applyMeshOverpaintSmoothing(values, resolution, stride, webgl, colorTexture) {
+    if (!isSupportedOverpaintType(values.dOverpaintType.ref.value))
+        return;
+    var smoothingData = calcMeshColorSmoothing({
+        vertexCount: values.uVertexCount.ref.value,
+        instanceCount: values.uInstanceCount.ref.value,
+        groupCount: values.uGroupCount.ref.value,
+        transformBuffer: values.aTransform.ref.value,
+        instanceBuffer: values.aInstance.ref.value,
+        positionBuffer: values.aPosition.ref.value,
+        groupBuffer: values.aGroup.ref.value,
+        colorData: values.tOverpaint.ref.value,
+        colorType: values.dOverpaintType.ref.value,
+        boundingSphere: values.boundingSphere.ref.value,
+        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
+        itemSize: 4
+    }, resolution, stride, webgl, colorTexture);
+    if (smoothingData.kind === 'volume') {
+        ValueCell.updateIfChanged(values.dOverpaintType, smoothingData.type);
+        ValueCell.update(values.tOverpaintGrid, smoothingData.texture);
+        ValueCell.update(values.uOverpaintTexDim, smoothingData.gridTexDim);
+        ValueCell.update(values.uOverpaintGridDim, smoothingData.gridDim);
+        ValueCell.update(values.uOverpaintGridTransform, smoothingData.gridTransform);
+    }
+    else if (smoothingData.kind === 'vertex') {
+        ValueCell.updateIfChanged(values.dOverpaintType, smoothingData.type);
+        ValueCell.update(values.tOverpaint, smoothingData.texture);
+        ValueCell.update(values.uOverpaintTexDim, smoothingData.texDim);
+    }
+}
+function isSupportedTransparencyType(x) {
+    return x === 'groupInstance';
+}
+export function applyMeshTransparencySmoothing(values, resolution, stride, webgl, colorTexture) {
+    if (!isSupportedTransparencyType(values.dTransparencyType.ref.value))
+        return;
+    var smoothingData = calcMeshColorSmoothing({
+        vertexCount: values.uVertexCount.ref.value,
+        instanceCount: values.uInstanceCount.ref.value,
+        groupCount: values.uGroupCount.ref.value,
+        transformBuffer: values.aTransform.ref.value,
+        instanceBuffer: values.aInstance.ref.value,
+        positionBuffer: values.aPosition.ref.value,
+        groupBuffer: values.aGroup.ref.value,
+        colorData: values.tTransparency.ref.value,
+        colorType: values.dTransparencyType.ref.value,
+        boundingSphere: values.boundingSphere.ref.value,
+        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
+        itemSize: 1
+    }, resolution, stride, webgl, colorTexture);
+    if (smoothingData.kind === 'volume') {
+        ValueCell.updateIfChanged(values.dTransparencyType, smoothingData.type);
+        ValueCell.update(values.tTransparencyGrid, smoothingData.texture);
+        ValueCell.update(values.uTransparencyTexDim, smoothingData.gridTexDim);
+        ValueCell.update(values.uTransparencyGridDim, smoothingData.gridDim);
+        ValueCell.update(values.uTransparencyGridTransform, smoothingData.gridTransform);
+    }
+    else if (smoothingData.kind === 'vertex') {
+        ValueCell.updateIfChanged(values.dTransparencyType, smoothingData.type);
+        ValueCell.update(values.tTransparency, smoothingData.texture);
+        ValueCell.update(values.uTransparencyTexDim, smoothingData.texDim);
+    }
+}
 //# sourceMappingURL=color-smoothing.js.map

package/lib/mol-geo/geometry/mesh/color-smoothing.js.map

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package/lib/mol-geo/geometry/overpaint-data.d.ts

@@ -1,16 +1,21 @@
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { ValueCell } from '../../mol-util/value-cell';
-import { Vec2 } from '../../mol-math/linear-algebra';
+import { Vec2, Vec3, Vec4 } from '../../mol-math/linear-algebra';
 import { TextureImage } from '../../mol-gl/renderable/util';
 import { Color } from '../../mol-util/color';
+import { Texture } from '../../mol-gl/webgl/texture';
 export declare type OverpaintData = {
     tOverpaint: ValueCell<TextureImage<Uint8Array>>;
     uOverpaintTexDim: ValueCell<Vec2>;
     dOverpaint: ValueCell<boolean>;
+    tOverpaintGrid: ValueCell<Texture>;
+    uOverpaintGridDim: ValueCell<Vec3>;
+    uOverpaintGridTransform: ValueCell<Vec4>;
+    dOverpaintType: ValueCell<string>;
 };
 export declare function applyOverpaintColor(array: Uint8Array, start: number, end: number, color: Color): boolean;
 export declare function clearOverpaint(array: Uint8Array, start: number, end: number): boolean;

package/lib/mol-geo/geometry/overpaint-data.js

@@ -1,12 +1,13 @@
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { ValueCell } from '../../mol-util/value-cell';
-import { Vec2 } from '../../mol-math/linear-algebra';
+import { Vec2, Vec3, Vec4 } from '../../mol-math/linear-algebra';
 import { createTextureImage } from '../../mol-gl/renderable/util';
 import { Color } from '../../mol-util/color';
+import { createNullTexture } from '../../mol-gl/webgl/texture';
 export function applyOverpaintColor(array, start, end, color) {
     for (var i = start; i < end; ++i) {
         Color.toArray(color, array, i * 4);
@@ -31,6 +32,10 @@ export function createOverpaint(count, overpaintData) {
             tOverpaint: ValueCell.create(overpaint),
             uOverpaintTexDim: ValueCell.create(Vec2.create(overpaint.width, overpaint.height)),
             dOverpaint: ValueCell.create(count > 0),
+            tOverpaintGrid: ValueCell.create(createNullTexture()),
+            uOverpaintGridDim: ValueCell.create(Vec3.create(1, 1, 1)),
+            uOverpaintGridTransform: ValueCell.create(Vec4.create(0, 0, 0, 1)),
+            dOverpaintType: ValueCell.create('groupInstance'),
         };
     }
 }
@@ -46,6 +51,10 @@ export function createEmptyOverpaint(overpaintData) {
             tOverpaint: ValueCell.create(emptyOverpaintTexture),
             uOverpaintTexDim: ValueCell.create(Vec2.create(1, 1)),
             dOverpaint: ValueCell.create(false),
+            tOverpaintGrid: ValueCell.create(createNullTexture()),
+            uOverpaintGridDim: ValueCell.create(Vec3.create(1, 1, 1)),
+            uOverpaintGridTransform: ValueCell.create(Vec4.create(0, 0, 0, 1)),
+            dOverpaintType: ValueCell.create('groupInstance'),
         };
     }
 }

package/lib/mol-geo/geometry/overpaint-data.js.map

@@ -1 +1 @@
-{"version":3,"file":"overpaint-data.js","sourceRoot":"","sources":["../../../src/mol-geo/geometry/overpaint-data.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,SAAS,EAAE,MAAM,2BAA2B,CAAC;AACtD,OAAO,EAAE,IAAI,EAAE,MAAM,+BAA+B,CAAC;AACrD,OAAO,EAAgB,kBAAkB,EAAE,MAAM,8BAA8B,CAAC;AAChF,OAAO,EAAE,KAAK,EAAE,MAAM,sBAAsB,CAAC;AAQ7C,MAAM,UAAU,mBAAmB,CAAC,KAAiB,EAAE,KAAa,EAAE,GAAW,EAAE,KAAY;IAC3F,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,GAAG,EAAE,EAAE,CAAC,EAAE;QAC9B,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,KAAK,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;QACnC,KAAK,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC;KAC1B;IACD,OAAO,IAAI,CAAC;AAChB,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,KAAiB,EAAE,KAAa,EAAE,GAAW;IACxE,KAAK,CAAC,IAAI,CAAC,CAAC,EAAE,KAAK,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,CAAC,CAAC;IAClC,OAAO,IAAI,CAAC;AAChB,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,KAAa,EAAE,aAA6B;IACxE,IAAM,SAAS,GAAG,kBAAkB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,EAAE,CAAC,EAAE,UAAU,EAAE,aAAa,IAAI,aAAa,CAAC,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IACnI,IAAI,aAAa,EAAE;QACf,SAAS,CAAC,MAAM,CAAC,aAAa,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;QACtD,SAAS,CAAC,MAAM,CAAC,aAAa,CAAC,gBAAgB,EAAE,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC;QACjG,SAAS,CAAC,eAAe,CAAC,aAAa,CAAC,UAAU,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC;QAC/D,OAAO,aAAa,CAAC;KACxB;SAAM;QACH,OAAO;YACH,UAAU,EAAE,SAAS,CAAC,MAAM,CAAC,SAAS,CAAC;YACvC,gBAAgB,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC;YAClF,UAAU,EAAE,SAAS,CAAC,MAAM,CAAC,KAAK,GAAG,CAAC,CAAC;SAC1C,CAAC;KACL;AACL,CAAC;AAED,IAAM,qBAAqB,GAAG,EAAE,KAAK,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC;AAChF,MAAM,UAAU,oBAAoB,CAAC,aAA6B;IAC9D,IAAI,aAAa,EAAE;QACf,SAAS,CAAC,MAAM,CAAC,aAAa,CAAC,UAAU,EAAE,qBAAqB,CAAC,CAAC;QAClE,SAAS,CAAC,MAAM,CAAC,aAAa,CAAC,gBAAgB,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;QACpE,OAAO,aAAa,CAAC;KACxB;SAAM;QACH,OAAO;YACH,UAAU,EAAE,SAAS,CAAC,MAAM,CAAC,qBAAqB,CAAC;YACnD,gBAAgB,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;YACrD,UAAU,EAAE,SAAS,CAAC,MAAM,CAAC,KAAK,CAAC;SACtC,CAAC;KACL;AACL,CAAC"}
+{"version":3,"file":"overpaint-data.js","sourceRoot":"","sources":["../../../src/mol-geo/geometry/overpaint-data.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,SAAS,EAAE,MAAM,2BAA2B,CAAC;AACtD,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAgB,kBAAkB,EAAE,MAAM,8BAA8B,CAAC;AAChF,OAAO,EAAE,KAAK,EAAE,MAAM,sBAAsB,CAAC;AAC7C,OAAO,EAAE,iBAAiB,EAAW,MAAM,4BAA4B,CAAC;AAaxE,MAAM,UAAU,mBAAmB,CAAC,KAAiB,EAAE,KAAa,EAAE,GAAW,EAAE,KAAY;IAC3F,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,GAAG,EAAE,EAAE,CAAC,EAAE;QAC9B,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,KAAK,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;QACnC,KAAK,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,CAAC;KAC1B;IACD,OAAO,IAAI,CAAC;AAChB,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,KAAiB,EAAE,KAAa,EAAE,GAAW;IACxE,KAAK,CAAC,IAAI,CAAC,CAAC,EAAE,KAAK,GAAG,CAAC,EAAE,GAAG,GAAG,CAAC,CAAC,CAAC;IAClC,OAAO,IAAI,CAAC;AAChB,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,KAAa,EAAE,aAA6B;IACxE,IAAM,SAAS,GAAG,kBAAkB,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,EAAE,CAAC,EAAE,UAAU,EAAE,aAAa,IAAI,aAAa,CAAC,UAAU,CAAC,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IACnI,IAAI,aAAa,EAAE;QACf,SAAS,CAAC,MAAM,CAAC,aAAa,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;QACtD,SAAS,CAAC,MAAM,CAAC,aAAa,CAAC,gBAAgB,EAAE,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC;QACjG,SAAS,CAAC,eAAe,CAAC,aAAa,CAAC,UAAU,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC;QAC/D,OAAO,aAAa,CAAC;KACxB;SAAM;QACH,OAAO;YACH,UAAU,EAAE,SAAS,CAAC,MAAM,CAAC,SAAS,CAAC;YACvC,gBAAgB,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,CAAC;YAClF,UAAU,EAAE,SAAS,CAAC,MAAM,CAAC,KAAK,GAAG,CAAC,CAAC;YAEvC,cAAc,EAAE,SAAS,CAAC,MAAM,CAAC,iBAAiB,EAAE,CAAC;YACrD,iBAAiB,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YACzD,uBAAuB,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YAClE,cAAc,EAAE,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC;SACpD,CAAC;KACL;AACL,CAAC;AAED,IAAM,qBAAqB,GAAG,EAAE,KAAK,EAAE,IAAI,UAAU,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC;AAChF,MAAM,UAAU,oBAAoB,CAAC,aAA6B;IAC9D,IAAI,aAAa,EAAE;QACf,SAAS,CAAC,MAAM,CAAC,aAAa,CAAC,UAAU,EAAE,qBAAqB,CAAC,CAAC;QAClE,SAAS,CAAC,MAAM,CAAC,aAAa,CAAC,gBAAgB,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;QACpE,OAAO,aAAa,CAAC;KACxB;SAAM;QACH,OAAO;YACH,UAAU,EAAE,SAAS,CAAC,MAAM,CAAC,qBAAqB,CAAC;YACnD,gBAAgB,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;YACrD,UAAU,EAAE,SAAS,CAAC,MAAM,CAAC,KAAK,CAAC;YAEnC,cAAc,EAAE,SAAS,CAAC,MAAM,CAAC,iBAAiB,EAAE,CAAC;YACrD,iBAAiB,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YACzD,uBAAuB,EAAE,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;YAClE,cAAc,EAAE,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC;SACpD,CAAC;KACL;AACL,CAAC"}

package/lib/mol-geo/geometry/points/points.d.ts

@@ -34,11 +34,11 @@ export declare namespace Points {
         fuzzy: string;
     };
     type StyleTypes = keyof typeof StyleTypes;
-    const StyleTypeNames: ("fuzzy" | "square" | "circle")[];
+    const StyleTypeNames: ("square" | "circle" | "fuzzy")[];
     const Params: {
         sizeFactor: PD.Numeric;
         pointSizeAttenuation: PD.BooleanParam;
-        pointStyle: PD.Select<"fuzzy" | "square" | "circle">;
+        pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
         alpha: PD.Numeric;
         quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
     };

package/lib/mol-geo/geometry/spheres/spheres.d.ts

@@ -35,7 +35,6 @@ export declare namespace Spheres {
         ignoreLight: PD.BooleanParam;
         xrayShaded: PD.BooleanParam;
         alpha: PD.Numeric;
-        /** Number of spheres */
         quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
     };
     type Params = typeof Params;

package/lib/mol-geo/geometry/texture-mesh/color-smoothing.d.ts

@@ -8,7 +8,7 @@ import { Texture } from '../../../mol-gl/webgl/texture';
 import { ValueSpec, AttributeSpec, UniformSpec, TextureSpec, DefineSpec } from '../../../mol-gl/renderable/schema';
 import { Vec2, Vec3, Vec4 } from '../../../mol-math/linear-algebra';
 import { Sphere3D } from '../../../mol-math/geometry';
-import { TextureImage } from '../../../mol-gl/renderable/util';
+import { TextureMeshValues } from '../../../mol-gl/renderable/texture-mesh';
 export declare const ColorAccumulateSchema: {
     drawCount: ValueSpec<"number">;
     instanceCount: ValueSpec<"number">;
@@ -23,7 +23,7 @@ export declare const ColorAccumulateSchema: {
     tPosition: TextureSpec<"texture">;
     tGroup: TextureSpec<"texture">;
     uColorTexDim: UniformSpec<"v2">;
-    tColor: TextureSpec<"image-uint8">;
+    tColor: TextureSpec<"texture">;
     dColorType: DefineSpec<"string">;
     uCurrentSlice: UniformSpec<"f">;
     uCurrentX: UniformSpec<"f">;
@@ -40,11 +40,12 @@ interface AccumulateInput {
     instanceBuffer: Float32Array;
     positionTexture: Texture;
     groupTexture: Texture;
-    colorData: TextureImage<Uint8Array>;
+    colorData: Texture;
     colorType: 'group' | 'groupInstance';
 }
 export declare const ColorNormalizeSchema: {
     tColor: TextureSpec<"texture">;
+    tCount: TextureSpec<"texture">;
     uTexSize: UniformSpec<"v2">;
     drawCount: ValueSpec<"number">;
     instanceCount: ValueSpec<"number">;
@@ -62,4 +63,7 @@ export declare function calcTextureMeshColorSmoothing(input: ColorSmoothingInput
     gridTransform: Vec4;
     type: string;
 };
+export declare function applyTextureMeshColorSmoothing(values: TextureMeshValues, resolution: number, stride: number, webgl: WebGLContext, colorTexture?: Texture): void;
+export declare function applyTextureMeshOverpaintSmoothing(values: TextureMeshValues, resolution: number, stride: number, webgl: WebGLContext, colorTexture?: Texture): void;
+export declare function applyTextureMeshTransparencySmoothing(values: TextureMeshValues, resolution: number, stride: number, webgl: WebGLContext, colorTexture?: Texture): void;
 export {};