npm - molstar - Versions diffs - 2.3.9 → 2.4.0 - Mend

molstar 2.3.9 → 2.4.0

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Files changed (550) hide show

package/lib/commonjs/mol-repr/structure/representation/line.d.ts CHANGED Viewed

@@ -12,7 +12,7 @@ export declare const LineParams: {
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     visuals: PD.MultiSelect<"intra-bond" | "inter-bond" | "element-point" | "element-cross">;
     lineSizeAttenuation: PD.BooleanParam;
     ignoreHydrogens: PD.BooleanParam;
@@ -23,8 +23,8 @@ export declare const LineParams: {
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
     pointSizeAttenuation: PD.BooleanParam;
     pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     aromaticBonds: PD.BooleanParam;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
@@ -36,7 +36,7 @@ export declare function getLineParams(ctx: ThemeRegistryContext, structure: Stru
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     visuals: PD.MultiSelect<"intra-bond" | "inter-bond" | "element-point" | "element-cross">;
     lineSizeAttenuation: PD.BooleanParam;
     ignoreHydrogens: PD.BooleanParam;
@@ -47,8 +47,8 @@ export declare function getLineParams(ctx: ThemeRegistryContext, structure: Stru
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
     pointSizeAttenuation: PD.BooleanParam;
     pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     aromaticBonds: PD.BooleanParam;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
@@ -61,7 +61,7 @@ export declare const LineRepresentationProvider: StructureRepresentationProvider
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     visuals: PD.MultiSelect<"intra-bond" | "inter-bond" | "element-point" | "element-cross">;
     lineSizeAttenuation: PD.BooleanParam;
     ignoreHydrogens: PD.BooleanParam;
@@ -72,8 +72,8 @@ export declare const LineRepresentationProvider: StructureRepresentationProvider
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
     pointSizeAttenuation: PD.BooleanParam;
     pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     aromaticBonds: PD.BooleanParam;
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;

package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts CHANGED Viewed

@@ -17,14 +17,14 @@ export declare const MolecularSurfaceParams: {
     probeRadius: PD.Numeric;
     resolution: PD.Numeric;
     probePositions: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     lineSizeAttenuation: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
-    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
+    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
         resolutionFactor: number;
         sampleStride: number;
-    }>, "on">>;
+    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
@@ -41,14 +41,14 @@ export declare function getMolecularSurfaceParams(ctx: ThemeRegistryContext, str
     probeRadius: PD.Numeric;
     resolution: PD.Numeric;
     probePositions: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     lineSizeAttenuation: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
-    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
+    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
         resolutionFactor: number;
         sampleStride: number;
-    }>, "on">>;
+    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
@@ -66,14 +66,14 @@ export declare const MolecularSurfaceRepresentationProvider: StructureRepresenta
     probeRadius: PD.Numeric;
     resolution: PD.Numeric;
     probePositions: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     lineSizeAttenuation: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
-    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
+    smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
         resolutionFactor: number;
         sampleStride: number;
-    }>, "on">>;
+    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts CHANGED Viewed

@@ -12,7 +12,7 @@ export declare const OrientationParams: {
     visuals: PD.MultiSelect<"orientation-ellipsoid-mesh">;
     sizeFactor: PD.Numeric;
     detail: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -27,7 +27,7 @@ export declare function getOrientationParams(ctx: ThemeRegistryContext, structur
     visuals: PD.MultiSelect<"orientation-ellipsoid-mesh">;
     sizeFactor: PD.Numeric;
     detail: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -43,7 +43,7 @@ export declare const OrientationRepresentationProvider: StructureRepresentationP
     visuals: PD.MultiSelect<"orientation-ellipsoid-mesh">;
     sizeFactor: PD.Numeric;
     detail: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/representation/point.d.ts CHANGED Viewed

@@ -12,7 +12,7 @@ export declare const PointParams: {
     pointSizeAttenuation: PD.BooleanParam;
     ignoreHydrogens: PD.BooleanParam;
     traceOnly: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
     pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
@@ -24,7 +24,7 @@ export declare function getPointParams(ctx: ThemeRegistryContext, structure: Str
     pointSizeAttenuation: PD.BooleanParam;
     ignoreHydrogens: PD.BooleanParam;
     traceOnly: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
     pointStyle: PD.Select<"square" | "circle" | "fuzzy">;
@@ -37,7 +37,7 @@ export declare const PointRepresentationProvider: StructureRepresentationProvide
     pointSizeAttenuation: PD.BooleanParam;
     ignoreHydrogens: PD.BooleanParam;
     traceOnly: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
     pointStyle: PD.Select<"square" | "circle" | "fuzzy">;

package/lib/commonjs/mol-repr/structure/representation/putty.d.ts CHANGED Viewed

@@ -12,7 +12,7 @@ export declare const PuttyParams: {
     sizeFactor: PD.Numeric;
     visuals: PD.MultiSelect<"polymer-gap" | "polymer-tube">;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -29,7 +29,7 @@ export declare function getPuttyParams(ctx: ThemeRegistryContext, structure: Str
     sizeFactor: PD.Numeric;
     visuals: PD.MultiSelect<"polymer-gap" | "polymer-tube">;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -47,7 +47,7 @@ export declare const PuttyRepresentationProvider: StructureRepresentationProvide
     sizeFactor: PD.Numeric;
     visuals: PD.MultiSelect<"polymer-gap" | "polymer-tube">;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts CHANGED Viewed

@@ -14,7 +14,7 @@ export declare const SpacefillParams: {
     ignoreHydrogens: PD.BooleanParam;
     traceOnly: PD.BooleanParam;
     tryUseImpostor: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
@@ -31,7 +31,7 @@ export declare function getSpacefillParams(ctx: ThemeRegistryContext, structure:
     ignoreHydrogens: PD.BooleanParam;
     traceOnly: PD.BooleanParam;
     tryUseImpostor: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
@@ -49,7 +49,7 @@ export declare const SpacefillRepresentationProvider: StructureRepresentationPro
     ignoreHydrogens: PD.BooleanParam;
     traceOnly: PD.BooleanParam;
     tryUseImpostor: PD.BooleanParam;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/units-representation.js CHANGED Viewed

@@ -10,6 +10,7 @@ exports.UnitsRepresentation = void 0;
 var tslib_1 = require("tslib");
 var param_definition_1 = require("../../mol-util/param-definition");
 var representation_1 = require("./representation");
+var representation_2 = require("../representation");
 var structure_1 = require("../../mol-model/structure");
 var rxjs_1 = require("rxjs");
 var render_object_1 = require("../../mol-gl/render-object");
@@ -28,6 +29,7 @@ function UnitsRepresentation(label, ctx, getParams, visualCtor) {
     var updated = new rxjs_1.Subject();
     var materialId = (0, render_object_1.getNextMaterialId)();
     var renderObjects = [];
+    var geometryState = new representation_2.Representation.GeometryState();
     var _state = representation_1.StructureRepresentationStateBuilder.create();
     var visuals = new Map();
     var _structure;
@@ -245,9 +247,12 @@ function UnitsRepresentation(label, ctx, getParams, visualCtor) {
                         renderObjects.length = 0;
                         visuals.forEach(function (_a) {
                             var visual = _a.visual;
-                            if (visual.renderObject)
+                            if (visual.renderObject) {
                                 renderObjects.push(visual.renderObject);
+                                geometryState.add(visual.renderObject.id, visual.geometryVersion);
+                            }
                         });
+                        geometryState.snapshot();
                         // set new structure
                         if (structure)
                             _structure = structure;
@@ -306,9 +311,9 @@ function UnitsRepresentation(label, ctx, getParams, visualCtor) {
         if (pickable !== undefined)
             visual.setPickable(pickable);
         if (overpaint !== undefined)
-            visual.setOverpaint(overpaint);
+            visual.setOverpaint(overpaint, webgl);
         if (transparency !== undefined)
-            visual.setTransparency(transparency);
+            visual.setTransparency(transparency, webgl);
         if (clipping !== undefined)
             visual.setClipping(clipping);
         if (transform !== undefined)
@@ -332,20 +337,14 @@ function UnitsRepresentation(label, ctx, getParams, visualCtor) {
             newState.alphaFactor = alphaFactor;
         if (pickable !== _state.pickable)
             newState.pickable = pickable;
-        if (overpaint !== undefined && !overpaint_1.Overpaint.areEqual(overpaint, _state.overpaint)) {
-            if (_structure) {
-                newState.overpaint = overpaint_1.Overpaint.remap(overpaint, _structure);
-            }
+        if (overpaint !== undefined && _structure) {
+            newState.overpaint = overpaint_1.Overpaint.remap(overpaint, _structure);
         }
-        if (transparency !== undefined && !transparency_1.Transparency.areEqual(transparency, _state.transparency)) {
-            if (_structure) {
-                newState.transparency = transparency_1.Transparency.remap(transparency, _structure);
-            }
+        if (transparency !== undefined && _structure) {
+            newState.transparency = transparency_1.Transparency.remap(transparency, _structure);
         }
-        if (clipping !== undefined && !clipping_1.Clipping.areEqual(clipping, _state.clipping)) {
-            if (_structure) {
-                newState.clipping = clipping_1.Clipping.remap(clipping, _structure);
-            }
+        if (clipping !== undefined && _structure) {
+            newState.clipping = clipping_1.Clipping.remap(clipping, _structure);
         }
         if (transform !== undefined && !linear_algebra_1.Mat4.areEqual(transform, _state.transform, linear_algebra_1.EPSILON)) {
             newState.transform = transform;
@@ -385,6 +384,7 @@ function UnitsRepresentation(label, ctx, getParams, visualCtor) {
             });
             return groupCount;
         },
+        get geometryVersion() { return geometryState.version; },
         get props() { return _props; },
         get params() { return _params; },
         get state() { return _state; },

package/lib/commonjs/mol-repr/structure/units-representation.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-repr/structure/units-visual.d.ts CHANGED Viewed

@@ -44,7 +44,7 @@ interface UnitsVisualGeometryBuilder<P extends StructureParams, G extends Geomet
 }
 export declare function UnitsVisual<G extends Geometry, P extends StructureParams & Geometry.Params<G>>(builder: UnitsVisualGeometryBuilder<P, G>, materialId: number): UnitsVisual<P>;
 export declare const UnitsMeshParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -59,7 +59,7 @@ export interface UnitsMeshVisualBuilder<P extends UnitsMeshParams> extends Units
 }
 export declare function UnitsMeshVisual<P extends UnitsMeshParams>(builder: UnitsMeshVisualBuilder<P>, materialId: number): UnitsVisual<P>;
 export declare const UnitsSpheresParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
     doubleSided: PD.BooleanParam;
@@ -73,7 +73,7 @@ export interface UnitsSpheresVisualBuilder<P extends UnitsSpheresParams> extends
 }
 export declare function UnitsSpheresVisual<P extends UnitsSpheresParams>(builder: UnitsSpheresVisualBuilder<P>, materialId: number): UnitsVisual<P>;
 export declare const UnitsCylindersParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
     sizeAspectRatio: PD.Numeric;
@@ -88,7 +88,7 @@ export interface UnitsCylindersVisualBuilder<P extends UnitsCylindersParams> ext
 }
 export declare function UnitsCylindersVisual<P extends UnitsCylindersParams>(builder: UnitsCylindersVisualBuilder<P>, materialId: number): UnitsVisual<P>;
 export declare const UnitsPointsParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
     pointSizeAttenuation: PD.BooleanParam;
@@ -101,7 +101,7 @@ export interface UnitsPointVisualBuilder<P extends UnitsPointsParams> extends Un
 }
 export declare function UnitsPointsVisual<P extends UnitsPointsParams>(builder: UnitsPointVisualBuilder<P>, materialId: number): UnitsVisual<P>;
 export declare const UnitsLinesParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
     lineSizeAttenuation: PD.BooleanParam;
@@ -113,7 +113,7 @@ export interface UnitsLinesVisualBuilder<P extends UnitsLinesParams> extends Uni
 }
 export declare function UnitsLinesVisual<P extends UnitsLinesParams>(builder: UnitsLinesVisualBuilder<P>, materialId: number): UnitsVisual<P>;
 export declare const UnitsTextParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     sizeFactor: PD.Numeric;
     borderWidth: PD.Numeric;
@@ -142,7 +142,7 @@ export interface UnitsTextVisualBuilder<P extends UnitsTextParams> extends Units
 }
 export declare function UnitsTextVisual<P extends UnitsTextParams>(builder: UnitsTextVisualBuilder<P>, materialId: number): UnitsVisual<P>;
 export declare const UnitsDirectVolumeParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -152,7 +152,7 @@ export declare const UnitsDirectVolumeParams: {
     renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
         controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
         list: {
-            kind: "interpolate" | "set";
+            kind: "set" | "interpolate";
             colors: import("../../mol-util/color/color").ColorListEntry[];
         };
     }>, "volume"> | PD.NamedParams<PD.Normalize<{
@@ -175,7 +175,7 @@ export interface UnitsDirectVolumeVisualBuilder<P extends UnitsDirectVolumeParam
 }
 export declare function UnitsDirectVolumeVisual<P extends UnitsDirectVolumeParams>(builder: UnitsDirectVolumeVisualBuilder<P>, materialId: number): UnitsVisual<P>;
 export declare const UnitsTextureMeshParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/units-visual.js CHANGED Viewed

@@ -53,6 +53,7 @@ function UnitsVisual(builder, materialId) {
     var currentTheme;
     var currentStructureGroup;
     var geometry;
+    var geometryVersion = -1;
     var locationIt;
     var positionIt;
     function prepareUpdate(theme, props, structureGroup) {
@@ -184,8 +185,10 @@ function UnitsVisual(builder, materialId) {
         currentProps = newProps;
         currentTheme = newTheme;
         currentStructureGroup = newStructureGroup;
-        if (newGeometry)
+        if (newGeometry) {
             geometry = newGeometry;
+            geometryVersion += 1;
+        }
     }
     function _createGeometry(ctx, unit, structure, theme, props, geometry) {
         return (0, common_1.includesUnitKind)(props.unitKinds, unit)
@@ -219,6 +222,7 @@ function UnitsVisual(builder, materialId) {
     return {
         get groupCount() { return locationIt ? locationIt.count : 0; },
         get renderObject() { return locationIt && locationIt.count ? renderObject : undefined; },
+        get geometryVersion() { return geometryVersion; },
         createOrUpdate: function (ctx, theme, props, structureGroup) {
             prepareUpdate(theme, props, structureGroup || currentStructureGroup);
             if (updateState.createGeometry) {
@@ -269,11 +273,13 @@ function UnitsVisual(builder, materialId) {
         setTransform: function (matrix, instanceMatrices) {
             visual_1.Visual.setTransform(renderObject, matrix, instanceMatrices);
         },
-        setOverpaint: function (overpaint) {
-            visual_1.Visual.setOverpaint(renderObject, overpaint, lociApply, true);
+        setOverpaint: function (overpaint, webgl) {
+            var smoothing = { geometry: geometry, props: currentProps, webgl: webgl };
+            visual_1.Visual.setOverpaint(renderObject, overpaint, lociApply, true, smoothing);
         },
-        setTransparency: function (transparency) {
-            visual_1.Visual.setTransparency(renderObject, transparency, lociApply, true);
+        setTransparency: function (transparency, webgl) {
+            var smoothing = { geometry: geometry, props: currentProps, webgl: webgl };
+            visual_1.Visual.setTransparency(renderObject, transparency, lociApply, true, smoothing);
         },
         setClipping: function (clipping) {
             visual_1.Visual.setClipping(renderObject, clipping, lociApply, true);

package/lib/commonjs/mol-repr/structure/units-visual.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts CHANGED Viewed

@@ -13,8 +13,8 @@ export declare const InterUnitBondCylinderParams: {
     tryUseImpostor: PD.BooleanParam;
     includeParent: PD.BooleanParam;
     adjustCylinderLength: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
@@ -29,7 +29,7 @@ export declare const InterUnitBondCylinderParams: {
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
@@ -45,8 +45,8 @@ export declare function InterUnitBondCylinderVisual(materialId: number, structur
     tryUseImpostor: PD.BooleanParam;
     includeParent: PD.BooleanParam;
     adjustCylinderLength: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
@@ -61,7 +61,7 @@ export declare function InterUnitBondCylinderVisual(materialId: number, structur
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     doubleSided: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;