molstar 2.3.9 → 2.4.0

package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts

@@ -17,7 +17,7 @@ export declare type PolymerGapCylinderProps = typeof DefaultPolymerGapCylinderPr
 export declare const PolymerGapParams: {
     sizeFactor: PD.Numeric;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts

@@ -10,7 +10,7 @@ export declare const PolymerTraceMeshParams: {
     aspectRatio: PD.Numeric;
     arrowFactor: PD.Numeric;
     tubularHelices: PD.BooleanParam;
-    helixProfile: PD.Select<"square" | "elliptical" | "rounded">;
+    helixProfile: PD.Select<"elliptical" | "rounded" | "square">;
     detail: PD.Numeric;
     linearSegments: PD.Numeric;
     radialSegments: PD.Numeric;
@@ -20,7 +20,7 @@ export declare const DefaultPolymerTraceMeshProps: PD.Values<{
     aspectRatio: PD.Numeric;
     arrowFactor: PD.Numeric;
     tubularHelices: PD.BooleanParam;
-    helixProfile: PD.Select<"square" | "elliptical" | "rounded">;
+    helixProfile: PD.Select<"elliptical" | "rounded" | "square">;
     detail: PD.Numeric;
     linearSegments: PD.Numeric;
     radialSegments: PD.Numeric;
@@ -31,11 +31,11 @@ export declare const PolymerTraceParams: {
     aspectRatio: PD.Numeric;
     arrowFactor: PD.Numeric;
     tubularHelices: PD.BooleanParam;
-    helixProfile: PD.Select<"square" | "elliptical" | "rounded">;
+    helixProfile: PD.Select<"elliptical" | "rounded" | "square">;
     detail: PD.Numeric;
     linearSegments: PD.Numeric;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts

@@ -23,7 +23,7 @@ export declare const PolymerTubeParams: {
     detail: PD.Numeric;
     linearSegments: PD.Numeric;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"atomic" | "spheres" | "gaussians">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;

package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts

@@ -12,15 +12,15 @@ import { Loci } from '../../../../mol-model/loci';
 import { Interval } from '../../../../mol-data/int';
 import { StructureGroup } from './common';
 export declare const BondParams: {
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
 };
 export declare const DefaultBondProps: PD.Values<{
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
@@ -28,8 +28,8 @@ export declare const DefaultBondProps: PD.Values<{
 export declare type BondProps = typeof DefaultBondProps;
 export declare const BondCylinderParams: {
     adjustCylinderLength: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
@@ -47,8 +47,8 @@ export declare const BondCylinderParams: {
 };
 export declare const DefaultBondCylinderProps: PD.Values<{
     adjustCylinderLength: PD.BooleanParam;
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
@@ -66,8 +66,8 @@ export declare const DefaultBondCylinderProps: PD.Values<{
 }>;
 export declare type BondCylinderProps = typeof DefaultBondCylinderProps;
 export declare const BondLineParams: {
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
@@ -77,8 +77,8 @@ export declare const BondLineParams: {
     dashCount: PD.Numeric;
 };
 export declare const DefaultBondLineProps: PD.Values<{
-    includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
-    excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
+    includeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
+    excludeTypes: PD.MultiSelect<"covalent" | "computed" | "aromatic" | "metal-coordination" | "hydrogen-bond" | "disulfide">;
     ignoreHydrogens: PD.BooleanParam;
     aromaticBonds: PD.BooleanParam;
     multipleBonds: PD.Select<"off" | "symmetric" | "offset">;
@@ -95,11 +95,11 @@ export declare namespace BondIterator {
     function fromGroup(structureGroup: StructureGroup): LocationIterator;
     function fromStructure(structure: Structure): LocationIterator;
 }
-export declare function getIntraBondLoci(pickingId: PickingId, structureGroup: StructureGroup, id: number): {
+export declare function getIntraBondLoci(pickingId: PickingId, structureGroup: StructureGroup, id: number): Bond.Loci | {
     kind: "empty-loci";
-} | Bond.Loci;
+};
 export declare function eachIntraBond(loci: Loci, structureGroup: StructureGroup, apply: (interval: Interval) => boolean, isMarking: boolean): boolean;
-export declare function getInterBondLoci(pickingId: PickingId, structure: Structure, id: number): {
+export declare function getInterBondLoci(pickingId: PickingId, structure: Structure, id: number): Bond.Loci | {
     kind: "empty-loci";
-} | Bond.Loci;
+};
 export declare function eachInterBond(loci: Loci, structure: Structure, apply: (interval: Interval) => boolean, isMarking: boolean): boolean;

package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts

@@ -29,7 +29,7 @@ export declare const UnitKindInfo: {
     gaussians: {};
 };
 export declare type UnitKind = keyof typeof UnitKindInfo;
-export declare const UnitKindOptions: ["spheres" | "atomic" | "gaussians", string][];
+export declare const UnitKindOptions: ["atomic" | "spheres" | "gaussians", string][];
 export declare function includesUnitKind(unitKinds: UnitKind[], unit: Unit): boolean;
 export declare function getVolumeSliceInfo(box: Box3D, resolution: number, maxCells?: number): {
     area: number;

package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts

@@ -29,13 +29,13 @@ export declare type ElementSphereImpostorProps = {
 } & ElementProps;
 export declare function createElementSphereImpostor(ctx: VisualContext, unit: Unit, structure: Structure, theme: Theme, props: ElementSphereImpostorProps, spheres?: Spheres): Spheres;
 export declare function eachElement(loci: Loci, structureGroup: StructureGroup, apply: (interval: Interval) => boolean): boolean;
-export declare function getElementLoci(pickingId: PickingId, structureGroup: StructureGroup, id: number): {
+export declare function getElementLoci(pickingId: PickingId, structureGroup: StructureGroup, id: number): StructureElement.Loci | {
     kind: "empty-loci";
-} | StructureElement.Loci;
+};
 export declare function eachSerialElement(loci: Loci, structure: Structure, apply: (interval: Interval) => boolean): boolean;
-export declare function getSerialElementLoci(pickingId: PickingId, structure: Structure, id: number): {
+export declare function getSerialElementLoci(pickingId: PickingId, structure: Structure, id: number): StructureElement.Loci | {
     kind: "empty-loci";
-} | StructureElement.Loci;
+};
 export declare namespace ElementIterator {
     function fromGroup(structureGroup: StructureGroup): LocationIterator;
     function fromStructure(structure: Structure): LocationIterator;

package/lib/commonjs/mol-repr/structure/visual/util/polymer.d.ts

@@ -34,7 +34,7 @@ export declare function eachAtomicUnitTracedElement(offset: number, groupSize: n
 /** Mark a polymer element (e.g. part of a cartoon trace) */
 export declare function eachPolymerElement(loci: Loci, structureGroup: StructureGroup, apply: (interval: Interval) => boolean): boolean;
 /** Return a Loci for both directions of the polymer gap element. */
-export declare function getPolymerGapElementLoci(pickingId: PickingId, structureGroup: StructureGroup, id: number): {
+export declare function getPolymerGapElementLoci(pickingId: PickingId, structureGroup: StructureGroup, id: number): Bond.Loci | {
     kind: "empty-loci";
-} | Bond.Loci;
+};
 export declare function eachPolymerGapElement(loci: Loci, structureGroup: StructureGroup, apply: (interval: Interval) => boolean): boolean;

package/lib/commonjs/mol-repr/visual.d.ts

@@ -16,6 +16,7 @@ import { Overpaint } from '../mol-theme/overpaint';
 import { Interval } from '../mol-data/int';
 import { Transparency } from '../mol-theme/transparency';
 import { Clipping } from '../mol-theme/clipping';
+import { Geometry } from '../mol-geo/geometry/geometry';
 export interface VisualContext {
     readonly runtime: RuntimeContext;
     readonly webgl?: WebGLContext;
@@ -25,6 +26,7 @@ interface Visual<D, P extends PD.Params> {
     /** Number of addressable groups in all instances of the visual */
     readonly groupCount: number;
     readonly renderObject: GraphicsRenderObject | undefined;
+    readonly geometryVersion: number;
     createOrUpdate: (ctx: VisualContext, theme: Theme, props: PD.Values<P>, data?: D) => Promise<void> | void;
     getLoci: (pickingId: PickingId) => Loci;
     mark: (loci: Loci, action: MarkerAction) => boolean;
@@ -33,26 +35,32 @@ interface Visual<D, P extends PD.Params> {
     setPickable: (pickable: boolean) => void;
     setColorOnly: (colorOnly: boolean) => void;
     setTransform: (matrix?: Mat4, instanceMatrices?: Float32Array | null) => void;
-    setOverpaint: (overpaint: Overpaint) => void;
-    setTransparency: (transparency: Transparency) => void;
+    setOverpaint: (overpaint: Overpaint, webgl?: WebGLContext) => void;
+    setTransparency: (transparency: Transparency, webgl?: WebGLContext) => void;
     setClipping: (clipping: Clipping) => void;
     destroy: () => void;
     mustRecreate?: (data: D, props: PD.Values<P>, webgl?: WebGLContext) => boolean;
 }
 declare namespace Visual {
-    type LociApply = (loci: Loci, apply: (interval: Interval) => boolean, isMarking: boolean) => boolean;
-    function setVisibility(renderObject: GraphicsRenderObject | undefined, visible: boolean): void;
-    function setAlphaFactor(renderObject: GraphicsRenderObject | undefined, alphaFactor: number): void;
-    function setPickable(renderObject: GraphicsRenderObject | undefined, pickable: boolean): void;
-    function setColorOnly(renderObject: GraphicsRenderObject | undefined, colorOnly: boolean): void;
-    type PreviousMark = {
+    export type LociApply = (loci: Loci, apply: (interval: Interval) => boolean, isMarking: boolean) => boolean;
+    export function setVisibility(renderObject: GraphicsRenderObject | undefined, visible: boolean): void;
+    export function setAlphaFactor(renderObject: GraphicsRenderObject | undefined, alphaFactor: number): void;
+    export function setPickable(renderObject: GraphicsRenderObject | undefined, pickable: boolean): void;
+    export function setColorOnly(renderObject: GraphicsRenderObject | undefined, colorOnly: boolean): void;
+    export type PreviousMark = {
         loci: Loci;
         action: MarkerAction;
         status: MarkerInfo['status'];
     };
-    function mark(renderObject: GraphicsRenderObject | undefined, loci: Loci, action: MarkerAction, lociApply: LociApply, previous?: PreviousMark): boolean;
-    function setOverpaint(renderObject: GraphicsRenderObject | undefined, overpaint: Overpaint, lociApply: LociApply, clear: boolean): void;
-    function setTransparency(renderObject: GraphicsRenderObject | undefined, transparency: Transparency, lociApply: LociApply, clear: boolean): void;
-    function setClipping(renderObject: GraphicsRenderObject | undefined, clipping: Clipping, lociApply: LociApply, clear: boolean): void;
-    function setTransform(renderObject: GraphicsRenderObject | undefined, transform?: Mat4, instanceTransforms?: Float32Array | null): void;
+    export function mark(renderObject: GraphicsRenderObject | undefined, loci: Loci, action: MarkerAction, lociApply: LociApply, previous?: PreviousMark): boolean;
+    type SmoothingContext = {
+        geometry: Geometry;
+        props: PD.Values<any>;
+        webgl?: WebGLContext;
+    };
+    export function setOverpaint(renderObject: GraphicsRenderObject | undefined, overpaint: Overpaint, lociApply: LociApply, clear: boolean, smoothing?: SmoothingContext): void;
+    export function setTransparency(renderObject: GraphicsRenderObject | undefined, transparency: Transparency, lociApply: LociApply, clear: boolean, smoothing?: SmoothingContext): void;
+    export function setClipping(renderObject: GraphicsRenderObject | undefined, clipping: Clipping, lociApply: LociApply, clear: boolean): void;
+    export function setTransform(renderObject: GraphicsRenderObject | undefined, transform?: Mat4, instanceTransforms?: Float32Array | null): void;
+    export {};
 }

package/lib/commonjs/mol-repr/visual.js

@@ -17,6 +17,9 @@ var int_1 = require("../mol-data/int");
 var transparency_data_1 = require("../mol-geo/geometry/transparency-data");
 var clipping_data_1 = require("../mol-geo/geometry/clipping-data");
 var marker_data_1 = require("../mol-geo/geometry/marker-data");
+var base_1 = require("../mol-geo/geometry/base");
+var color_smoothing_1 = require("../mol-geo/geometry/mesh/color-smoothing");
+var color_smoothing_2 = require("../mol-geo/geometry/texture-mesh/color-smoothing");
 var Visual;
 (function (Visual) {
     function setVisibility(renderObject, visible) {
@@ -106,10 +109,10 @@ var Visual;
         return changed;
     }
     Visual.mark = mark;
-    function setOverpaint(renderObject, overpaint, lociApply, clear) {
+    function setOverpaint(renderObject, overpaint, lociApply, clear, smoothing) {
         if (!renderObject)
             return;
-        var _a = renderObject.values, tOverpaint = _a.tOverpaint, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
+        var _a = renderObject.values, tOverpaint = _a.tOverpaint, dOverpaintType = _a.dOverpaintType, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
         var count = uGroupCount.ref.value * instanceCount.ref.value;
         // ensure texture has right size
         (0, overpaint_data_1.createOverpaint)(overpaint.layers.length ? count : 0, renderObject.values);
@@ -118,7 +121,7 @@ var Visual;
         if (clear)
             (0, overpaint_data_1.clearOverpaint)(array, 0, count);
         var _loop_1 = function (i, il) {
-            var _b = overpaint.layers[i], loci = _b.loci, color = _b.color, clear_1 = _b.clear;
+            var _d = overpaint.layers[i], loci = _d.loci, color = _d.color, clear_1 = _d.clear;
             var apply = function (interval) {
                 var start = int_1.Interval.start(interval);
                 var end = int_1.Interval.end(interval);
@@ -132,12 +135,34 @@ var Visual;
             _loop_1(i, il);
         }
         mol_util_1.ValueCell.update(tOverpaint, tOverpaint.ref.value);
+        mol_util_1.ValueCell.updateIfChanged(dOverpaintType, 'groupInstance');
+        if (overpaint.layers.length === 0)
+            return;
+        if (smoothing && (0, base_1.hasColorSmoothingProp)(smoothing.props)) {
+            var geometry = smoothing.geometry, props = smoothing.props, webgl = smoothing.webgl;
+            if (geometry.kind === 'mesh') {
+                var _b = geometry.meta, resolution = _b.resolution, overpaintTexture = _b.overpaintTexture;
+                var csp = (0, base_1.getColorSmoothingProps)(props.smoothColors, true, resolution);
+                if (csp) {
+                    (0, color_smoothing_1.applyMeshOverpaintSmoothing)(renderObject.values, csp.resolution, csp.stride, webgl, overpaintTexture);
+                    geometry.meta.overpaintTexture = renderObject.values.tOverpaintGrid.ref.value;
+                }
+            }
+            else if (webgl && geometry.kind === 'texture-mesh') {
+                var _c = geometry.meta, resolution = _c.resolution, overpaintTexture = _c.overpaintTexture;
+                var csp = (0, base_1.getColorSmoothingProps)(props.smoothColors, true, resolution);
+                if (csp) {
+                    (0, color_smoothing_2.applyTextureMeshOverpaintSmoothing)(renderObject.values, csp.resolution, csp.stride, webgl, overpaintTexture);
+                    geometry.meta.overpaintTexture = renderObject.values.tOverpaintGrid.ref.value;
+                }
+            }
+        }
     }
     Visual.setOverpaint = setOverpaint;
-    function setTransparency(renderObject, transparency, lociApply, clear) {
+    function setTransparency(renderObject, transparency, lociApply, clear, smoothing) {
         if (!renderObject)
             return;
-        var _a = renderObject.values, tTransparency = _a.tTransparency, transparencyAverage = _a.transparencyAverage, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
+        var _a = renderObject.values, tTransparency = _a.tTransparency, dTransparencyType = _a.dTransparencyType, transparencyAverage = _a.transparencyAverage, uGroupCount = _a.uGroupCount, instanceCount = _a.instanceCount;
         var count = uGroupCount.ref.value * instanceCount.ref.value;
         // ensure texture has right size and variant
         (0, transparency_data_1.createTransparency)(transparency.layers.length ? count : 0, renderObject.values);
@@ -146,7 +171,7 @@ var Visual;
         if (clear)
             (0, transparency_data_1.clearTransparency)(array, 0, count);
         var _loop_2 = function (i, il) {
-            var _b = transparency.layers[i], loci = _b.loci, value = _b.value;
+            var _d = transparency.layers[i], loci = _d.loci, value = _d.value;
             var apply = function (interval) {
                 var start = int_1.Interval.start(interval);
                 var end = int_1.Interval.end(interval);
@@ -159,6 +184,28 @@ var Visual;
         }
         mol_util_1.ValueCell.update(tTransparency, tTransparency.ref.value);
         mol_util_1.ValueCell.updateIfChanged(transparencyAverage, (0, transparency_data_1.getTransparencyAverage)(array, count));
+        mol_util_1.ValueCell.updateIfChanged(dTransparencyType, 'groupInstance');
+        if (transparency.layers.length === 0)
+            return;
+        if (smoothing && (0, base_1.hasColorSmoothingProp)(smoothing.props)) {
+            var geometry = smoothing.geometry, props = smoothing.props, webgl = smoothing.webgl;
+            if (geometry.kind === 'mesh') {
+                var _b = geometry.meta, resolution = _b.resolution, transparencyTexture = _b.transparencyTexture;
+                var csp = (0, base_1.getColorSmoothingProps)(props.smoothColors, true, resolution);
+                if (csp) {
+                    (0, color_smoothing_1.applyMeshTransparencySmoothing)(renderObject.values, csp.resolution, csp.stride, webgl, transparencyTexture);
+                    geometry.meta.transparencyTexture = renderObject.values.tTransparencyGrid.ref.value;
+                }
+            }
+            else if (webgl && geometry.kind === 'texture-mesh') {
+                var _c = geometry.meta, resolution = _c.resolution, transparencyTexture = _c.transparencyTexture;
+                var csp = (0, base_1.getColorSmoothingProps)(props.smoothColors, true, resolution);
+                if (csp) {
+                    (0, color_smoothing_2.applyTextureMeshTransparencySmoothing)(renderObject.values, csp.resolution, csp.stride, webgl, transparencyTexture);
+                    geometry.meta.transparencyTexture = renderObject.values.tTransparencyGrid.ref.value;
+                }
+            }
+        }
     }
     Visual.setTransparency = setTransparency;
     function setClipping(renderObject, clipping, lociApply, clear) {

package/lib/commonjs/mol-repr/visual.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-repr/volume/direct-volume.d.ts

@@ -18,9 +18,9 @@ import { PickingId } from '../../mol-geo/geometry/picking';
 export declare function createDirectVolume2d(ctx: RuntimeContext, webgl: WebGLContext, volume: Volume, directVolume?: DirectVolume): DirectVolume;
 export declare function createDirectVolume3d(ctx: RuntimeContext, webgl: WebGLContext, volume: Volume, directVolume?: DirectVolume): DirectVolume;
 export declare function createDirectVolume(ctx: VisualContext, volume: Volume, theme: Theme, props: PD.Values<DirectVolumeParams>, directVolume?: DirectVolume): Promise<DirectVolume>;
-export declare function getDirectVolumeLoci(pickingId: PickingId, volume: Volume, props: DirectVolumeProps, id: number): Volume.Cell.Loci | {
+export declare function getDirectVolumeLoci(pickingId: PickingId, volume: Volume, props: DirectVolumeProps, id: number): {
     kind: "empty-loci";
-};
+} | Volume.Cell.Loci;
 export declare function eachDirectVolume(loci: Loci, volume: Volume, props: DirectVolumeProps, apply: (interval: Interval) => boolean): boolean;
 export declare const DirectVolumeParams: {
     quality: {
@@ -54,7 +54,7 @@ export declare const DirectVolumeParams: {
     renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
         controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
         list: {
-            kind: "interpolate" | "set";
+            kind: "set" | "interpolate";
             colors: import("../../mol-util/color/color").ColorListEntry[];
         };
     }>, "volume"> | PD.NamedParams<PD.Normalize<{
@@ -104,7 +104,7 @@ export declare function getDirectVolumeParams(ctx: ThemeRegistryContext, volume:
     renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
         controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
         list: {
-            kind: "interpolate" | "set";
+            kind: "set" | "interpolate";
             colors: import("../../mol-util/color/color").ColorListEntry[];
         };
     }>, "volume"> | PD.NamedParams<PD.Normalize<{
@@ -156,7 +156,7 @@ export declare const DirectVolumeRepresentationProvider: VolumeRepresentationPro
     renderMode: PD.Mapped<PD.NamedParams<PD.Normalize<{
         controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
         list: {
-            kind: "interpolate" | "set";
+            kind: "set" | "interpolate";
             colors: import("../../mol-util/color/color").ColorListEntry[];
         };
     }>, "volume"> | PD.NamedParams<PD.Normalize<{

package/lib/commonjs/mol-repr/volume/registry.d.ts

@@ -91,7 +91,7 @@ export declare namespace VolumeRepresentationRegistry {
                     legend?: import("../../mol-util/legend").Legend | undefined;
                 }) | undefined;
             };
-            dimension: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "x"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "y"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "z">>;
+            dimension: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "y"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "x"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "z">>;
             isoValue: import("../../mol-util/param-definition").ParamDefinition.Conditioned<Readonly<{
                 kind: "absolute";
                 absoluteValue: number;
@@ -114,7 +114,7 @@ export declare namespace VolumeRepresentationRegistry {
                     relativeValue: number;
                 }>, number>;
             }>;
-            interpolation: import("../../mol-util/param-definition").ParamDefinition.Select<"nearest" | "bspline" | "catmulrom" | "mitchell">;
+            interpolation: import("../../mol-util/param-definition").ParamDefinition.Select<"bspline" | "nearest" | "catmulrom" | "mitchell">;
             alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
         }, "slice">;
         'direct-volume': import("./representation").VolumeRepresentationProvider<{
@@ -149,7 +149,7 @@ export declare namespace VolumeRepresentationRegistry {
             renderMode: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
                 controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
                 list: {
-                    kind: "interpolate" | "set";
+                    kind: "set" | "interpolate";
                     colors: import("../../mol-util/color/color").ColorListEntry[];
                 };
             }>, "volume"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{

package/lib/commonjs/mol-repr/volume/representation.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/mol-repr/volume/representation.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2018-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -45,6 +45,7 @@ function VolumeVisual(builder, materialId) {
     var currentTheme = theme_1.Theme.createEmpty();
     var currentVolume;
     var geometry;
+    var geometryVersion = -1;
     var locationIt;
     var positionIt;
     function prepareUpdate(theme, props, volume) {
@@ -116,8 +117,10 @@ function VolumeVisual(builder, materialId) {
         currentProps = newProps;
         currentTheme = newTheme;
         currentVolume = newVolume;
-        if (newGeometry)
+        if (newGeometry) {
             geometry = newGeometry;
+            geometryVersion += 1;
+        }
     }
     function lociApply(loci, apply) {
         if ((0, loci_1.isEveryLoci)(loci)) {
@@ -130,6 +133,7 @@ function VolumeVisual(builder, materialId) {
     return {
         get groupCount() { return locationIt ? locationIt.count : 0; },
         get renderObject() { return renderObject; },
+        get geometryVersion() { return geometryVersion; },
         createOrUpdate: function (ctx, theme, props, volume) {
             if (props === void 0) { props = {}; }
             return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
@@ -196,6 +200,7 @@ function VolumeRepresentation(label, ctx, getParams, visualCtor, getLoci) {
     var version = 0;
     var webgl = ctx.webgl;
     var updated = new rxjs_1.Subject();
+    var geometryState = new representation_1.Representation.GeometryState();
     var materialId = (0, render_object_1.getNextMaterialId)();
     var renderObjects = [];
     var _state = representation_1.Representation.createState();
@@ -237,8 +242,11 @@ function VolumeRepresentation(label, ctx, getParams, visualCtor, getLoci) {
                     case 2:
                         // update list of renderObjects
                         renderObjects.length = 0;
-                        if (visual && visual.renderObject)
+                        if (visual && visual.renderObject) {
                             renderObjects.push(visual.renderObject);
+                            geometryState.add(visual.renderObject.id, visual.geometryVersion);
+                        }
+                        geometryState.snapshot();
                         // increment version
                         updated.next(version++);
                         return [2 /*return*/];
@@ -280,6 +288,7 @@ function VolumeRepresentation(label, ctx, getParams, visualCtor, getLoci) {
         get params() { return _params; },
         get state() { return _state; },
         get theme() { return _theme; },
+        get geometryVersion() { return geometryState.version; },
         renderObjects: renderObjects,
         updated: updated,
         createOrUpdate: createOrUpdate,

package/lib/commonjs/mol-repr/volume/representation.js.map

@@ -1 +1 @@
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