molstar 2.3.9 → 2.4.0

package/lib/commonjs/extensions/geo-export/mesh-exporter.js

@@ -3,6 +3,7 @@
  * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.MeshExporter = void 0;
@@ -17,6 +18,7 @@ var size_data_1 = require("../../mol-geo/geometry/size-data");
 var linear_algebra_1 = require("../../mol-math/linear-algebra");
 var color_1 = require("../../mol-util/color/color");
 var float_packing_1 = require("../../mol-util/float-packing");
+var util_2 = require("../../mol-gl/compute/util");
 var GeoExportName = 'geo-export';
 // avoiding namespace lookup improved performance in Chrome (Aug 2020)
 var v3fromArray = linear_algebra_1.Vec3.fromArray;
@@ -59,22 +61,37 @@ var MeshExporter = /** @class */ (function () {
         }
         return (0, float_packing_1.decodeFloatRGB)(r, g, b);
     };
-    MeshExporter.getInterpolatedColors = function (vertices, vertexCount, values, stride, colorType, webgl) {
+    MeshExporter.getInterpolatedColors = function (webgl, input) {
+        var values = input.values, vertexCount = input.vertexCount, vertices = input.vertices, colorType = input.colorType, stride = input.stride;
         var colorGridTransform = values.uColorGridTransform.ref.value;
         var colorGridDim = values.uColorGridDim.ref.value;
         var colorTexDim = values.uColorTexDim.ref.value;
         var aTransform = values.aTransform.ref.value;
         var instanceCount = values.uInstanceCount.ref.value;
-        if (!webgl.namedFramebuffers[GeoExportName]) {
-            webgl.namedFramebuffers[GeoExportName] = webgl.resources.framebuffer();
-        }
-        var framebuffer = webgl.namedFramebuffers[GeoExportName];
-        var width = colorTexDim[0], height = colorTexDim[1];
-        var colorGrid = new Uint8Array(width * height * 4);
-        framebuffer.bind();
-        values.tColorGrid.ref.value.attachFramebuffer(framebuffer, 0);
-        webgl.readPixels(0, 0, width, height, colorGrid);
-        var interpolated = (0, color_smoothing_1.getTrilinearlyInterpolated)({ vertexCount: vertexCount, instanceCount: instanceCount, transformBuffer: aTransform, positionBuffer: vertices, colorType: colorType, grid: colorGrid, gridDim: colorGridDim, gridTexDim: colorTexDim, gridTransform: colorGridTransform, vertexStride: stride, colorStride: 4 });
+        var colorGrid = (0, util_2.readTexture)(webgl, values.tColorGrid.ref.value).array;
+        var interpolated = (0, color_smoothing_1.getTrilinearlyInterpolated)({ vertexCount: vertexCount, instanceCount: instanceCount, transformBuffer: aTransform, positionBuffer: vertices, colorType: colorType, grid: colorGrid, gridDim: colorGridDim, gridTexDim: colorTexDim, gridTransform: colorGridTransform, vertexStride: stride, colorStride: 4, outputStride: 3 });
+        return interpolated.array;
+    };
+    MeshExporter.getInterpolatedOverpaint = function (webgl, input) {
+        var values = input.values, vertexCount = input.vertexCount, vertices = input.vertices, colorType = input.colorType, stride = input.stride;
+        var overpaintGridTransform = values.uOverpaintGridTransform.ref.value;
+        var overpaintGridDim = values.uOverpaintGridDim.ref.value;
+        var overpaintTexDim = values.uOverpaintTexDim.ref.value;
+        var aTransform = values.aTransform.ref.value;
+        var instanceCount = values.uInstanceCount.ref.value;
+        var overpaintGrid = (0, util_2.readTexture)(webgl, values.tOverpaintGrid.ref.value).array;
+        var interpolated = (0, color_smoothing_1.getTrilinearlyInterpolated)({ vertexCount: vertexCount, instanceCount: instanceCount, transformBuffer: aTransform, positionBuffer: vertices, colorType: colorType, grid: overpaintGrid, gridDim: overpaintGridDim, gridTexDim: overpaintTexDim, gridTransform: overpaintGridTransform, vertexStride: stride, colorStride: 4, outputStride: 4 });
+        return interpolated.array;
+    };
+    MeshExporter.getInterpolatedTransparency = function (webgl, input) {
+        var values = input.values, vertexCount = input.vertexCount, vertices = input.vertices, colorType = input.colorType, stride = input.stride;
+        var transparencyGridTransform = values.uTransparencyGridTransform.ref.value;
+        var transparencyGridDim = values.uTransparencyGridDim.ref.value;
+        var transparencyTexDim = values.uTransparencyTexDim.ref.value;
+        var aTransform = values.aTransform.ref.value;
+        var instanceCount = values.uInstanceCount.ref.value;
+        var transparencyGrid = (0, util_2.readAlphaTexture)(webgl, values.tTransparencyGrid.ref.value).array;
+        var interpolated = (0, color_smoothing_1.getTrilinearlyInterpolated)({ vertexCount: vertexCount, instanceCount: instanceCount, transformBuffer: aTransform, positionBuffer: vertices, colorType: colorType, grid: transparencyGrid, gridDim: transparencyGridDim, gridTexDim: transparencyTexDim, gridTransform: transparencyGridTransform, vertexStride: stride, colorStride: 4, outputStride: 1, itemOffset: 3 });
         return interpolated.array;
     };
     MeshExporter.quantizeColors = function (colorArray, vertexCount) {
@@ -156,11 +173,13 @@ var MeshExporter = /** @class */ (function () {
             };
         }
     };
-    MeshExporter.getColor = function (values, groups, vertexCount, instanceIndex, isGeoTexture, interpolatedColors, vertexIndex) {
+    MeshExporter.getColor = function (vertexIndex, geoData, interpolatedColors, interpolatedOverpaint) {
+        var values = geoData.values, instanceIndex = geoData.instanceIndex, isGeoTexture = geoData.isGeoTexture, groups = geoData.groups, vertexCount = geoData.vertexCount;
         var groupCount = values.uGroupCount.ref.value;
         var colorType = values.dColorType.ref.value;
         var uColor = values.uColor.ref.value;
         var tColor = values.tColor.ref.value.array;
+        var overpaintType = values.dOverpaintType.ref.value;
         var dOverpaint = values.dOverpaint.ref.value;
         var tOverpaint = values.tOverpaint.ref.value.array;
         var color;
@@ -196,13 +215,66 @@ var MeshExporter = /** @class */ (function () {
             default: throw new Error('Unsupported color type.');
         }
         if (dOverpaint) {
-            var group = isGeoTexture ? MeshExporter.getGroup(groups, vertexIndex) : groups[vertexIndex];
-            var overpaintColor = color_1.Color.fromArray(tOverpaint, (instanceIndex * groupCount + group) * 4);
-            var overpaintAlpha = tOverpaint[(instanceIndex * groupCount + group) * 4 + 3] / 255;
+            var overpaintColor = void 0;
+            var overpaintAlpha = void 0;
+            switch (overpaintType) {
+                case 'groupInstance': {
+                    var group = isGeoTexture ? MeshExporter.getGroup(groups, vertexIndex) : groups[vertexIndex];
+                    var idx = (instanceIndex * groupCount + group) * 4;
+                    overpaintColor = color_1.Color.fromArray(tOverpaint, idx);
+                    overpaintAlpha = tOverpaint[idx + 3] / 255;
+                    break;
+                }
+                case 'vertexInstance': {
+                    var idx = (instanceIndex * vertexCount + vertexIndex) * 4;
+                    overpaintColor = color_1.Color.fromArray(tOverpaint, idx);
+                    overpaintAlpha = tOverpaint[idx + 3] / 255;
+                    break;
+                }
+                case 'volumeInstance': {
+                    var idx = (instanceIndex * vertexCount + vertexIndex) * 4;
+                    overpaintColor = color_1.Color.fromArray(interpolatedOverpaint, idx);
+                    overpaintAlpha = interpolatedOverpaint[idx + 3] / 255;
+                    break;
+                }
+                default: throw new Error('Unsupported overpaint type.');
+            }
+            // interpolate twice to avoid darkening due to empty overpaint
+            overpaintColor = color_1.Color.interpolate(color, overpaintColor, overpaintAlpha);
             color = color_1.Color.interpolate(color, overpaintColor, overpaintAlpha);
         }
         return color;
     };
+    MeshExporter.getTransparency = function (vertexIndex, geoData, interpolatedTransparency) {
+        var values = geoData.values, instanceIndex = geoData.instanceIndex, isGeoTexture = geoData.isGeoTexture, groups = geoData.groups, vertexCount = geoData.vertexCount;
+        var groupCount = values.uGroupCount.ref.value;
+        var dTransparency = values.dTransparency.ref.value;
+        var tTransparency = values.tTransparency.ref.value.array;
+        var transparencyType = values.dTransparencyType.ref.value;
+        var transparency = 0;
+        if (dTransparency) {
+            switch (transparencyType) {
+                case 'groupInstance': {
+                    var group = isGeoTexture ? MeshExporter.getGroup(groups, vertexIndex) : groups[vertexIndex];
+                    var idx = (instanceIndex * groupCount + group);
+                    transparency = tTransparency[idx] / 255;
+                    break;
+                }
+                case 'vertexInstance': {
+                    var idx = (instanceIndex * vertexCount + vertexIndex);
+                    transparency = tTransparency[idx] / 255;
+                    break;
+                }
+                case 'volumeInstance': {
+                    var idx = (instanceIndex * vertexCount + vertexIndex);
+                    transparency = interpolatedTransparency[idx] / 255;
+                    break;
+                }
+                default: throw new Error('Unsupported transparency type.');
+            }
+        }
+        return transparency;
+    };
     MeshExporter.prototype.addMesh = function (values, webgl, ctx) {
         return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
             var aPosition, aNormal, aGroup, originalData, indices, vertexCount, drawCount;

package/lib/commonjs/extensions/geo-export/mesh-exporter.js.map

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package/lib/commonjs/extensions/geo-export/obj-exporter.d.ts

@@ -2,6 +2,7 @@
  * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { Box3D } from '../../mol-math/geometry';
 import { RuntimeContext } from '../../mol-task';

package/lib/commonjs/extensions/geo-export/obj-exporter.js

@@ -3,6 +3,7 @@
  * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.ObjExporter = void 0;
@@ -45,7 +46,7 @@ var ObjExporter = /** @class */ (function (_super) {
         mol_util_1.StringBuilder.newline(this.obj);
         if (!this.materialSet.has(material)) {
             this.materialSet.add(material);
-            var _a = color_1.Color.toRgbNormalized(color), r = _a[0], g = _a[1], b = _a[2];
+            var _a = color_1.Color.toRgbNormalized(color).map(function (v) { return Math.round(v * 1000) / 1000; }), r = _a[0], g = _a[1], b = _a[2];
             var mtl = this.mtl;
             mol_util_1.StringBuilder.writeSafe(mtl, "newmtl ".concat(material, "\n"));
             mol_util_1.StringBuilder.writeSafe(mtl, 'illum 2\n'); // illumination model
@@ -67,7 +68,7 @@ var ObjExporter = /** @class */ (function (_super) {
     };
     ObjExporter.prototype.addMeshWithColors = function (input) {
         return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-            var mesh, values, isGeoTexture, webgl, ctx, obj, t, n, tmpV, stride, groupCount, colorType, uAlpha, dTransparency, tTransparency, aTransform, instanceCount, interpolatedColors, instanceIndex, _a, vertices, normals, indices, groups, vertexCount, drawCount, i, i, i, v, color, alpha, group, transparency, v1, v2, v3;
+            var mesh, values, isGeoTexture, webgl, ctx, obj, t, n, tmpV, stride, colorType, overpaintType, transparencyType, uAlpha, aTransform, instanceCount, interpolatedColors, interpolatedOverpaint, interpolatedTransparency, stride_1, instanceIndex, _a, vertices, normals, indices, groups, vertexCount, drawCount, i, i, geoData, quantizedColors, i, v, color, i, color, transparency, alpha, v1, v2, v3;
             return (0, tslib_1.__generator)(this, function (_b) {
                 switch (_b.label) {
                     case 0:
@@ -77,16 +78,21 @@ var ObjExporter = /** @class */ (function (_super) {
                         n = (0, linear_algebra_1.Mat3)();
                         tmpV = (0, linear_algebra_1.Vec3)();
                         stride = isGeoTexture ? 4 : 3;
-                        groupCount = values.uGroupCount.ref.value;
                         colorType = values.dColorType.ref.value;
+                        overpaintType = values.dOverpaintType.ref.value;
+                        transparencyType = values.dTransparencyType.ref.value;
                         uAlpha = values.uAlpha.ref.value;
-                        dTransparency = values.dTransparency.ref.value;
-                        tTransparency = values.tTransparency.ref.value;
                         aTransform = values.aTransform.ref.value;
                         instanceCount = values.uInstanceCount.ref.value;
                         if (colorType === 'volume' || colorType === 'volumeInstance') {
-                            interpolatedColors = ObjExporter.getInterpolatedColors(mesh.vertices, mesh.vertexCount, values, stride, colorType, webgl);
-                            ObjExporter.quantizeColors(interpolatedColors, mesh.vertexCount);
+                            interpolatedColors = ObjExporter.getInterpolatedColors(webgl, { vertices: mesh.vertices, vertexCount: mesh.vertexCount, values: values, stride: stride, colorType: colorType });
+                        }
+                        if (overpaintType === 'volumeInstance') {
+                            interpolatedOverpaint = ObjExporter.getInterpolatedOverpaint(webgl, { vertices: mesh.vertices, vertexCount: mesh.vertexCount, values: values, stride: stride, colorType: overpaintType });
+                        }
+                        if (transparencyType === 'volumeInstance') {
+                            stride_1 = isGeoTexture ? 4 : 3;
+                            interpolatedTransparency = ObjExporter.getInterpolatedTransparency(webgl, { vertices: mesh.vertices, vertexCount: mesh.vertexCount, values: values, stride: stride_1, colorType: transparencyType });
                         }
                         return [4 /*yield*/, ctx.update({ isIndeterminate: false, current: 0, max: instanceCount })];
                     case 1:
@@ -127,16 +133,19 @@ var ObjExporter = /** @class */ (function (_super) {
                             mol_util_1.StringBuilder.writeFloat(obj, tmpV[2], 100);
                             mol_util_1.StringBuilder.newline(obj);
                         }
-                        // face
+                        geoData = { values: values, groups: groups, vertexCount: vertexCount, instanceIndex: instanceIndex, isGeoTexture: isGeoTexture };
+                        quantizedColors = new Uint8Array(drawCount * 3);
                         for (i = 0; i < drawCount; i += 3) {
                             v = isGeoTexture ? i : indices[i];
-                            color = ObjExporter.getColor(values, groups, vertexCount, instanceIndex, isGeoTexture, interpolatedColors, v);
-                            alpha = uAlpha;
-                            if (dTransparency) {
-                                group = isGeoTexture ? ObjExporter.getGroup(groups, i) : groups[indices[i]];
-                                transparency = tTransparency.array[instanceIndex * groupCount + group] / 255;
-                                alpha *= 1 - transparency;
-                            }
+                            color = ObjExporter.getColor(v, geoData, interpolatedColors, interpolatedOverpaint);
+                            color_1.Color.toArray(color, quantizedColors, i);
+                        }
+                        ObjExporter.quantizeColors(quantizedColors, mesh.vertexCount);
+                        // face
+                        for (i = 0; i < drawCount; i += 3) {
+                            color = color_1.Color.fromArray(quantizedColors, i);
+                            transparency = ObjExporter.getTransparency(i, geoData, interpolatedTransparency);
+                            alpha = Math.round(uAlpha * (1 - transparency) * 10) / 10;
                             this.updateMaterial(color, alpha);
                             v1 = this.vertexOffset + (isGeoTexture ? i : indices[i]) + 1;
                             v2 = this.vertexOffset + (isGeoTexture ? i + 1 : indices[i + 1]) + 1;

package/lib/commonjs/extensions/geo-export/obj-exporter.js.map

@@ -1 +1 @@
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package/lib/commonjs/extensions/geo-export/ui.js

@@ -20,37 +20,38 @@ var GeometryExporterUI = /** @class */ (function (_super) {
     function GeometryExporterUI() {
         var _this = _super !== null && _super.apply(this, arguments) || this;
         _this.save = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-            var data, _a;
-            return (0, tslib_1.__generator)(this, function (_b) {
-                switch (_b.label) {
+            var data, e_1;
+            return (0, tslib_1.__generator)(this, function (_a) {
+                switch (_a.label) {
                     case 0:
-                        _b.trys.push([0, 2, , 3]);
+                        _a.trys.push([0, 2, 3, 4]);
                         this.setState({ busy: true });
                         return [4 /*yield*/, this.controls.exportGeometry()];
                     case 1:
-                        data = _b.sent();
-                        this.setState({ busy: false });
+                        data = _a.sent();
                         (0, download_1.download)(data.blob, data.filename);
-                        return [3 /*break*/, 3];
+                        return [3 /*break*/, 4];
                     case 2:
-                        _a = _b.sent();
+                        e_1 = _a.sent();
+                        console.error(e_1);
+                        return [3 /*break*/, 4];
+                    case 3:
                         this.setState({ busy: false });
-                        return [3 /*break*/, 3];
-                    case 3: return [2 /*return*/];
+                        return [7 /*endfinally*/];
+                    case 4: return [2 /*return*/];
                 }
             });
         }); };
         _this.viewInAR = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-            var data, a_1, _a;
-            return (0, tslib_1.__generator)(this, function (_b) {
-                switch (_b.label) {
+            var data, a_1, e_2;
+            return (0, tslib_1.__generator)(this, function (_a) {
+                switch (_a.label) {
                     case 0:
-                        _b.trys.push([0, 2, , 3]);
+                        _a.trys.push([0, 2, 3, 4]);
                         this.setState({ busy: true });
                         return [4 /*yield*/, this.controls.exportGeometry()];
                     case 1:
-                        data = _b.sent();
-                        this.setState({ busy: false });
+                        data = _a.sent();
                         a_1 = document.createElement('a');
                         a_1.rel = 'ar';
                         a_1.href = URL.createObjectURL(data.blob);
@@ -59,12 +60,15 @@ var GeometryExporterUI = /** @class */ (function (_super) {
                         a_1.appendChild(document.createElement('img'));
                         setTimeout(function () { return URL.revokeObjectURL(a_1.href); }, 4E4); // 40s
                         setTimeout(function () { return a_1.dispatchEvent(new MouseEvent('click')); });
-                        return [3 /*break*/, 3];
+                        return [3 /*break*/, 4];
                     case 2:
-                        _a = _b.sent();
+                        e_2 = _a.sent();
+                        console.error(e_2);
+                        return [3 /*break*/, 4];
+                    case 3:
                         this.setState({ busy: false });
-                        return [3 /*break*/, 3];
-                    case 3: return [2 /*return*/];
+                        return [7 /*endfinally*/];
+                    case 4: return [2 /*return*/];
                 }
             });
         }); };

package/lib/commonjs/extensions/geo-export/ui.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ui.js","sourceRoot":"","sources":["../../../../src/extensions/geo-export/ui.tsx"],"names":[],"mappings":";;;;;AAAA;;;;GAIG;AAEH,6BAA6B;AAC7B,iDAAiF;AACjF,8DAA6D;AAC7D,4DAAyF;AACzF,sEAA4E;AAC5E,oDAAmD;AACnD,uCAA8D;AAM9D;IAAwC,mDAA8B;IAAtE;QAAA,qEAyFC;QA9BG,UAAI,GAAG;;;;;;wBAEC,IAAI,CAAC,QAAQ,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC;wBACjB,qBAAM,IAAI,CAAC,QAAQ,CAAC,cAAc,EAAE,EAAA;;wBAA3C,IAAI,GAAG,SAAoC;wBACjD,IAAA,mBAAQ,EAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC;;;;wBAEnC,OAAO,CAAC,KAAK,CAAC,GAAC,CAAC,CAAC;;;wBAEjB,IAAI,CAAC,QAAQ,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC;;;;;aAEtC,CAAA;QAED,cAAQ,GAAG;;;;;;wBAEH,IAAI,CAAC,QAAQ,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC;wBACjB,qBAAM,IAAI,CAAC,QAAQ,CAAC,cAAc,EAAE,EAAA;;wBAA3C,IAAI,GAAG,SAAoC;wBAC3C,MAAI,QAAQ,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC;wBACtC,GAAC,CAAC,GAAG,GAAG,IAAI,CAAC;wBACb,GAAC,CAAC,IAAI,GAAG,GAAG,CAAC,eAAe,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;wBACxC,8GAA8G;wBAC9G,mFAAmF;wBACnF,GAAC,CAAC,WAAW,CAAC,QAAQ,CAAC,aAAa,CAAC,KAAK,CAAC,CAAC,CAAC;wBAC7C,UAAU,CAAC,cAAM,OAAA,GAAG,CAAC,eAAe,CAAC,GAAC,CAAC,IAAI,CAAC,EAA3B,CAA2B,EAAE,GAAG,CAAC,CAAC,CAAC,MAAM;wBAC1D,UAAU,CAAC,cAAM,OAAA,GAAC,CAAC,aAAa,CAAC,IAAI,UAAU,CAAC,OAAO,CAAC,CAAC,EAAxC,CAAwC,CAAC,CAAC;;;;wBAE3D,OAAO,CAAC,KAAK,CAAC,GAAC,CAAC,CAAC;;;wBAEjB,IAAI,CAAC,QAAQ,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC;;;;;aAEtC,CAAA;;IACL,CAAC;IArFG,sBAAI,wCAAQ;aAAZ;YACI,OAAO,IAAI,CAAC,SAAS,IAAI,CAAC,IAAI,CAAC,SAAS,GAAG,IAAI,2BAAgB,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC;QAClF,CAAC;;;OAAA;IAES,yCAAY,GAAtB;QACI,OAAO;YACH,MAAM,EAAE,iBAAiB;YACzB,WAAW,EAAE,IAAI;YACjB,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,GAAG,EAAE,mBAAW,EAAE;SAC9C,CAAC;IACN,CAAC;IAES,2CAAc,GAAxB;;QACI,IAAI,IAAI,CAAC,aAAa,KAAK,SAAS,EAAE;YAClC,IAAI,CAAC,aAAa,GAAG,CAAC,CAAC,CAAA,MAAA,MAAA,QAAQ,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC,OAAO,0CAAE,QAAQ,mDAAG,IAAI,CAAC,CAAA,CAAC;SAChF;QACD,IAAM,IAAI,GAAG,IAAI,CAAC,QAAQ,CAAC;QAC3B,OAAO,6DACH,uBAAC,8BAAiB,IACd,MAAM,EAAE,yBAAc,EACtB,MAAM,EAAE,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,KAAK,EACnC,cAAc,EAAE,UAAA,EAAE,IAAI,OAAA,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,EAA9B,CAA8B,EACpD,UAAU,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,WAC7B,EACF,uBAAC,eAAM,0BAAC,IAAI,EAAE,iBAAS,EACnB,OAAO,EAAE,IAAI,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,SAAS,EAAE,CAAC,EAAE,EAC3C,QAAQ,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,IAAI,CAAC,CAAA,MAAA,IAAI,CAAC,MAAM,CAAC,QAAQ,0CAAE,SAAS,CAAC,KAAK,CAAA,kCAE9D,EACR,IAAI,CAAC,aAAa,IAAI,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,KAAK,MAAM;oBAChE,uBAAC,eAAM,0BAAC,IAAI,EAAE,mBAAW,EACrB,OAAO,EAAE,IAAI,CAAC,QAAQ,EAAE,KAAK,EAAE,EAAE,SAAS,EAAE,CAAC,EAAE,EAC/C,QAAQ,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,IAAI,CAAC,CAAA,MAAA,IAAI,CAAC,MAAM,CAAC,QAAQ,0CAAE,SAAS,CAAC,KAAK,CAAA,wCAE9D,YAEd,CAAC;IACR,CAAC;IAED,8CAAiB,GAAjB;QAAA,iBASC;QARG,IAAM,MAAM,GAAG,IAAA,YAAK,EAChB,IAAI,CAAC,QAAQ,CAAC,SAAS,CAAC,MAAM,EAC9B,IAAI,CAAC,MAAM,CAAC,QAAS,CAAC,SAAS,CAClC,CAAC;QAEF,IAAI,CAAC,SAAS,CAAC,MAAM,EAAE;YACnB,IAAI,CAAC,KAAI,CAAC,KAAK,CAAC,WAAW;gBAAE,KAAI,CAAC,WAAW,EAAE,CAAC;QACpD,CAAC,CAAC,CAAC;IACP,CAAC;IAED,iDAAoB,GAApB;;QACI,MAAA,IAAI,CAAC,SAAS,0CAAE,OAAO,EAAE,CAAC;QAC1B,IAAI,CAAC,SAAS,GAAG,KAAK,CAAC,CAAC;IAC5B,CAAC;IAgCL,yBAAC;AAAD,CAAC,AAzFD,CAAwC,0BAAmB,GAyF1D;AAzFY,gDAAkB"}

package/lib/commonjs/extensions/geo-export/usdz-exporter.d.ts

@@ -2,6 +2,7 @@
  * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { Style } from '../../mol-gl/renderer';
 import { Box3D } from '../../mol-math/geometry';

package/lib/commonjs/extensions/geo-export/usdz-exporter.js

@@ -3,6 +3,7 @@
  * Copyright (c) 2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
+ * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.UsdzExporter = void 0;
@@ -44,12 +45,12 @@ var UsdzExporter = /** @class */ (function (_super) {
         if (this.materialSet.has(materialKey))
             return;
         this.materialSet.add(materialKey);
-        var _a = color_1.Color.toRgbNormalized(color), r = _a[0], g = _a[1], b = _a[2];
+        var _a = color_1.Color.toRgbNormalized(color).map(function (v) { return Math.round(v * 1000) / 1000; }), r = _a[0], g = _a[1], b = _a[2];
         this.materials.push("\ndef Material \"material".concat(materialKey, "\"\n{\n    token outputs:surface.connect = </material").concat(materialKey, "/shader.outputs:surface>\n    def Shader \"shader\"\n    {\n        uniform token info:id = \"UsdPreviewSurface\"\n        color3f inputs:diffuseColor = (").concat(r, ",").concat(g, ",").concat(b, ")\n        float inputs:opacity = ").concat(alpha, "\n        float inputs:metallic = ").concat(this.style.metalness, "\n        float inputs:roughness = ").concat(this.style.roughness, "\n        token outputs:surface\n    }\n}\n"));
     };
     UsdzExporter.prototype.addMeshWithColors = function (input) {
         return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-            var mesh, values, isGeoTexture, webgl, ctx, t, n, tmpV, stride, groupCount, colorType, uAlpha, dTransparency, tTransparency, aTransform, instanceCount, interpolatedColors, _loop_1, this_1, instanceIndex;
+            var mesh, values, isGeoTexture, webgl, ctx, t, n, tmpV, stride, colorType, overpaintType, transparencyType, uAlpha, aTransform, instanceCount, interpolatedColors, interpolatedOverpaint, stride_1, interpolatedTransparency, stride_2, _loop_1, this_1, instanceIndex;
             return (0, tslib_1.__generator)(this, function (_a) {
                 switch (_a.label) {
                     case 0:
@@ -58,22 +59,28 @@ var UsdzExporter = /** @class */ (function (_super) {
                         n = (0, linear_algebra_1.Mat3)();
                         tmpV = (0, linear_algebra_1.Vec3)();
                         stride = isGeoTexture ? 4 : 3;
-                        groupCount = values.uGroupCount.ref.value;
                         colorType = values.dColorType.ref.value;
+                        overpaintType = values.dOverpaintType.ref.value;
+                        transparencyType = values.dTransparencyType.ref.value;
                         uAlpha = values.uAlpha.ref.value;
-                        dTransparency = values.dTransparency.ref.value;
-                        tTransparency = values.tTransparency.ref.value;
                         aTransform = values.aTransform.ref.value;
                         instanceCount = values.uInstanceCount.ref.value;
                         if (colorType === 'volume' || colorType === 'volumeInstance') {
-                            interpolatedColors = UsdzExporter.getInterpolatedColors(mesh.vertices, mesh.vertexCount, values, stride, colorType, webgl);
-                            UsdzExporter.quantizeColors(interpolatedColors, mesh.vertexCount);
+                            interpolatedColors = UsdzExporter.getInterpolatedColors(webgl, { vertices: mesh.vertices, vertexCount: mesh.vertexCount, values: values, stride: stride, colorType: colorType });
+                        }
+                        if (overpaintType === 'volumeInstance') {
+                            stride_1 = isGeoTexture ? 4 : 3;
+                            interpolatedOverpaint = UsdzExporter.getInterpolatedOverpaint(webgl, { vertices: mesh.vertices, vertexCount: mesh.vertexCount, values: values, stride: stride_1, colorType: overpaintType });
+                        }
+                        if (transparencyType === 'volumeInstance') {
+                            stride_2 = isGeoTexture ? 4 : 3;
+                            interpolatedTransparency = UsdzExporter.getInterpolatedTransparency(webgl, { vertices: mesh.vertices, vertexCount: mesh.vertexCount, values: values, stride: stride_2, colorType: transparencyType });
                         }
                         return [4 /*yield*/, ctx.update({ isIndeterminate: false, current: 0, max: instanceCount })];
                     case 1:
                         _a.sent();
                         _loop_1 = function (instanceIndex) {
-                            var _b, vertices, normals, indices, groups, vertexCount, drawCount, vertexBuilder, normalBuilder, indexBuilder, i, i, i, v, faceIndicesByMaterial, i, v, color, alpha, group, transparency, materialKey, faceIndices, materialBinding, materialKey, geomSubsets_1;
+                            var _b, vertices, normals, indices, groups, vertexCount, drawCount, vertexBuilder, normalBuilder, indexBuilder, i, i, geoData, i, v, quantizedColors, i, v, color, faceIndicesByMaterial, i, color, transparency, alpha, materialKey, faceIndices, materialBinding, materialKey, geomSubsets_1;
                             return (0, tslib_1.__generator)(this, function (_c) {
                                 switch (_c.label) {
                                     case 0:
@@ -112,6 +119,7 @@ var UsdzExporter = /** @class */ (function (_super) {
                                             mol_util_1.StringBuilder.writeFloat(normalBuilder, tmpV[2], 100);
                                             mol_util_1.StringBuilder.writeSafe(normalBuilder, ')');
                                         }
+                                        geoData = { values: values, groups: groups, vertexCount: vertexCount, instanceIndex: instanceIndex, isGeoTexture: isGeoTexture };
                                         // face
                                         for (i = 0; i < drawCount; ++i) {
                                             v = isGeoTexture ? i : indices[i];
@@ -119,16 +127,18 @@ var UsdzExporter = /** @class */ (function (_super) {
                                                 mol_util_1.StringBuilder.writeSafe(indexBuilder, ',');
                                             mol_util_1.StringBuilder.writeInteger(indexBuilder, v);
                                         }
-                                        faceIndicesByMaterial = new Map();
+                                        quantizedColors = new Uint8Array(drawCount * 3);
                                         for (i = 0; i < drawCount; i += 3) {
                                             v = isGeoTexture ? i : indices[i];
-                                            color = UsdzExporter.getColor(values, groups, vertexCount, instanceIndex, isGeoTexture, interpolatedColors, v);
-                                            alpha = uAlpha;
-                                            if (dTransparency) {
-                                                group = isGeoTexture ? UsdzExporter.getGroup(groups, i) : groups[indices[i]];
-                                                transparency = tTransparency.array[instanceIndex * groupCount + group] / 255;
-                                                alpha *= 1 - transparency;
-                                            }
+                                            color = UsdzExporter.getColor(v, geoData, interpolatedColors, interpolatedOverpaint);
+                                            color_1.Color.toArray(color, quantizedColors, i);
+                                        }
+                                        UsdzExporter.quantizeColors(quantizedColors, mesh.vertexCount);
+                                        faceIndicesByMaterial = new Map();
+                                        for (i = 0; i < drawCount; i += 3) {
+                                            color = color_1.Color.fromArray(quantizedColors, i);
+                                            transparency = UsdzExporter.getTransparency(i, geoData, interpolatedTransparency);
+                                            alpha = Math.round(uAlpha * (1 - transparency) * 10) / 10;
                                             this_1.addMaterial(color, alpha);
                                             materialKey = UsdzExporter.getMaterialKey(color, alpha);
                                             faceIndices = faceIndicesByMaterial.get(materialKey);