molstar 2.3.9 → 2.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (550) hide show
  1. package/build/viewer/molstar.js +1 -1
  2. package/lib/cli/cifschema/util/cif-dic.js +1 -0
  3. package/lib/cli/cifschema/util/cif-dic.js.map +1 -1
  4. package/lib/commonjs/apps/viewer/index.d.ts +2 -2
  5. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
  6. package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +1 -1
  7. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +1 -1
  8. package/lib/commonjs/extensions/cellpack/model.d.ts +1 -1
  9. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
  10. package/lib/commonjs/extensions/geo-export/controls.js +1 -1
  11. package/lib/commonjs/extensions/geo-export/controls.js.map +1 -1
  12. package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +1 -0
  13. package/lib/commonjs/extensions/geo-export/glb-exporter.js +27 -17
  14. package/lib/commonjs/extensions/geo-export/glb-exporter.js.map +1 -1
  15. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +31 -2
  16. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +87 -15
  17. package/lib/commonjs/extensions/geo-export/mesh-exporter.js.map +1 -1
  18. package/lib/commonjs/extensions/geo-export/obj-exporter.d.ts +1 -0
  19. package/lib/commonjs/extensions/geo-export/obj-exporter.js +24 -15
  20. package/lib/commonjs/extensions/geo-export/obj-exporter.js.map +1 -1
  21. package/lib/commonjs/extensions/geo-export/ui.js +24 -20
  22. package/lib/commonjs/extensions/geo-export/ui.js.map +1 -1
  23. package/lib/commonjs/extensions/geo-export/usdz-exporter.d.ts +1 -0
  24. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +26 -16
  25. package/lib/commonjs/extensions/geo-export/usdz-exporter.js.map +1 -1
  26. package/lib/commonjs/extensions/mp4-export/controls.js +1 -1
  27. package/lib/commonjs/extensions/mp4-export/controls.js.map +1 -1
  28. package/lib/commonjs/extensions/mp4-export/ui.js +7 -6
  29. package/lib/commonjs/extensions/mp4-export/ui.js.map +1 -1
  30. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -2
  31. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  32. package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +22 -21
  33. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -5
  34. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +4 -4
  35. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +2 -2
  36. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -11
  37. package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
  38. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
  39. package/lib/commonjs/mol-data/int/impl/sorted-array.d.ts +1 -1
  40. package/lib/commonjs/mol-geo/geometry/base.d.ts +13 -1
  41. package/lib/commonjs/mol-geo/geometry/base.js +37 -2
  42. package/lib/commonjs/mol-geo/geometry/base.js.map +1 -1
  43. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +2 -2
  44. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +2 -2
  45. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +9 -2
  46. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +154 -35
  47. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js.map +1 -1
  48. package/lib/commonjs/mol-geo/geometry/overpaint-data.d.ts +7 -2
  49. package/lib/commonjs/mol-geo/geometry/overpaint-data.js +10 -1
  50. package/lib/commonjs/mol-geo/geometry/overpaint-data.js.map +1 -1
  51. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +0 -1
  52. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +7 -3
  53. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +162 -27
  54. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js.map +1 -1
  55. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -1
  56. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -1
  57. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  58. package/lib/commonjs/mol-geo/geometry/transparency-data.d.ts +7 -2
  59. package/lib/commonjs/mol-geo/geometry/transparency-data.js +10 -1
  60. package/lib/commonjs/mol-geo/geometry/transparency-data.js.map +1 -1
  61. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  62. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js.map +1 -1
  63. package/lib/commonjs/mol-gl/compute/util.d.ts +25 -6
  64. package/lib/commonjs/mol-gl/compute/util.js +76 -21
  65. package/lib/commonjs/mol-gl/compute/util.js.map +1 -1
  66. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +8 -0
  67. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +8 -0
  68. package/lib/commonjs/mol-gl/renderable/image.d.ts +8 -0
  69. package/lib/commonjs/mol-gl/renderable/lines.d.ts +8 -0
  70. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +8 -0
  71. package/lib/commonjs/mol-gl/renderable/points.d.ts +8 -0
  72. package/lib/commonjs/mol-gl/renderable/schema.d.ts +16 -0
  73. package/lib/commonjs/mol-gl/renderable/schema.js +8 -0
  74. package/lib/commonjs/mol-gl/renderable/schema.js.map +1 -1
  75. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +8 -0
  76. package/lib/commonjs/mol-gl/renderable/text.d.ts +8 -0
  77. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +22 -13
  78. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +1 -1
  79. package/lib/commonjs/mol-gl/renderable/texture-mesh.js.map +1 -1
  80. package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
  81. package/lib/commonjs/mol-gl/renderer.js +3 -0
  82. package/lib/commonjs/mol-gl/renderer.js.map +1 -1
  83. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  84. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  85. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js.map +1 -1
  86. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  87. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  88. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
  89. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  90. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  91. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js.map +1 -1
  92. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.d.ts +1 -1
  93. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +1 -1
  94. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js.map +1 -1
  95. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
  96. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
  97. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js.map +1 -1
  98. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.d.ts +1 -1
  99. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +1 -1
  100. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js.map +1 -1
  101. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  102. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  103. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js.map +1 -1
  104. package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
  105. package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
  106. package/lib/commonjs/mol-gl/shader/mesh.vert.js.map +1 -1
  107. package/lib/commonjs/mol-gl/webgl/extensions.js +1 -5
  108. package/lib/commonjs/mol-gl/webgl/extensions.js.map +1 -1
  109. package/lib/commonjs/mol-gl/webgl/resources.js +1 -1
  110. package/lib/commonjs/mol-gl/webgl/resources.js.map +1 -1
  111. package/lib/commonjs/mol-gl/webgl/vertex-array.d.ts +3 -2
  112. package/lib/commonjs/mol-gl/webgl/vertex-array.js +9 -2
  113. package/lib/commonjs/mol-gl/webgl/vertex-array.js.map +1 -1
  114. package/lib/commonjs/mol-io/common/typed-array.d.ts +1 -1
  115. package/lib/commonjs/mol-io/reader/_spec/sdf.spec.js +51 -0
  116. package/lib/commonjs/mol-io/reader/_spec/sdf.spec.js.map +1 -1
  117. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +2 -2
  118. package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
  119. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
  120. package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
  121. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.d.ts +8 -5
  122. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js +15 -5
  123. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js.map +1 -1
  124. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +2 -2
  125. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +1 -1
  126. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +14 -14
  127. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +1 -1
  128. package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
  129. package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.d.ts +9 -0
  130. package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.js +91 -0
  131. package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.js.map +1 -0
  132. package/lib/commonjs/mol-io/reader/sdf/parser.d.ts +1 -1
  133. package/lib/commonjs/mol-io/reader/sdf/parser.js +12 -4
  134. package/lib/commonjs/mol-io/reader/sdf/parser.js.map +1 -1
  135. package/lib/commonjs/mol-model/loci.d.ts +30 -30
  136. package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
  137. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +2 -2
  138. package/lib/commonjs/mol-model/structure/structure/properties.js +5 -5
  139. package/lib/commonjs/mol-model/structure/structure/properties.js.map +1 -1
  140. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +8 -8
  141. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +5 -5
  142. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +5 -5
  143. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
  144. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
  145. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -3
  146. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
  147. package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  148. package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
  149. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
  150. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +4 -4
  151. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +4 -4
  152. package/lib/commonjs/mol-plugin/commands.d.ts +2 -2
  153. package/lib/commonjs/mol-plugin/config.d.ts +1 -1
  154. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +6 -6
  155. package/lib/commonjs/mol-plugin-state/actions/file.js +4 -2
  156. package/lib/commonjs/mol-plugin-state/actions/file.js.map +1 -1
  157. package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +1 -1
  158. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
  159. package/lib/commonjs/mol-plugin-state/animation/helpers.d.ts +5 -5
  160. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +4 -4
  161. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +4 -4
  162. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +10 -10
  163. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +8 -8
  164. package/lib/commonjs/mol-plugin-state/formats/volume.js +1 -0
  165. package/lib/commonjs/mol-plugin-state/formats/volume.js.map +1 -1
  166. package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +4 -4
  167. package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +2 -2
  168. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
  169. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +14 -3
  170. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js.map +1 -1
  171. package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +1 -1
  172. package/lib/commonjs/mol-plugin-state/manager/snapshots.js +2 -1
  173. package/lib/commonjs/mol-plugin-state/manager/snapshots.js.map +1 -1
  174. package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +2 -2
  175. package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +1 -1
  176. package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +6 -6
  177. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +8 -8
  178. package/lib/commonjs/mol-plugin-state/transforms/representation.js +40 -14
  179. package/lib/commonjs/mol-plugin-state/transforms/representation.js.map +1 -1
  180. package/lib/commonjs/mol-plugin-ui/sequence/polymer.d.ts +1 -1
  181. package/lib/commonjs/mol-plugin-ui/state/common.js +10 -9
  182. package/lib/commonjs/mol-plugin-ui/state/common.js.map +1 -1
  183. package/lib/commonjs/mol-plugin-ui/state/snapshots.js +10 -8
  184. package/lib/commonjs/mol-plugin-ui/state/snapshots.js.map +1 -1
  185. package/lib/commonjs/mol-plugin-ui/structure/selection.js +2 -1
  186. package/lib/commonjs/mol-plugin-ui/structure/selection.js.map +1 -1
  187. package/lib/commonjs/mol-repr/representation.d.ts +9 -0
  188. package/lib/commonjs/mol-repr/representation.js +43 -4
  189. package/lib/commonjs/mol-repr/representation.js.map +1 -1
  190. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -1
  191. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +2 -2
  192. package/lib/commonjs/mol-repr/shape/representation.js +5 -0
  193. package/lib/commonjs/mol-repr/shape/representation.js.map +1 -1
  194. package/lib/commonjs/mol-repr/structure/complex-representation.js +11 -4
  195. package/lib/commonjs/mol-repr/structure/complex-representation.js.map +1 -1
  196. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +7 -7
  197. package/lib/commonjs/mol-repr/structure/complex-visual.js +11 -5
  198. package/lib/commonjs/mol-repr/structure/complex-visual.js.map +1 -1
  199. package/lib/commonjs/mol-repr/structure/params.d.ts +3 -3
  200. package/lib/commonjs/mol-repr/structure/registry.d.ts +26 -26
  201. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -3
  202. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +9 -9
  203. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
  204. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +6 -6
  205. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +9 -9
  206. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +9 -9
  207. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +6 -6
  208. package/lib/commonjs/mol-repr/structure/representation/label.d.ts +3 -3
  209. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +9 -9
  210. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +9 -9
  211. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -3
  212. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +3 -3
  213. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -3
  214. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -3
  215. package/lib/commonjs/mol-repr/structure/units-representation.js +15 -15
  216. package/lib/commonjs/mol-repr/structure/units-representation.js.map +1 -1
  217. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +9 -9
  218. package/lib/commonjs/mol-repr/structure/units-visual.js +11 -5
  219. package/lib/commonjs/mol-repr/structure/units-visual.js.map +1 -1
  220. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +6 -6
  221. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +3 -3
  222. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +6 -6
  223. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +3 -3
  224. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
  225. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
  226. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
  227. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -1
  228. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +1 -1
  229. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +2 -2
  230. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
  231. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +4 -4
  232. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +12 -12
  233. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +14 -12
  234. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js.map +1 -1
  235. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
  236. package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +1 -1
  237. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +3 -3
  238. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +5 -4
  239. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js.map +1 -1
  240. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
  241. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
  242. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
  243. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
  244. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
  245. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
  246. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
  247. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
  248. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +4 -4
  249. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
  250. package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +16 -16
  251. package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +1 -1
  252. package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +4 -4
  253. package/lib/commonjs/mol-repr/structure/visual/util/polymer.d.ts +2 -2
  254. package/lib/commonjs/mol-repr/visual.d.ts +21 -13
  255. package/lib/commonjs/mol-repr/visual.js +53 -6
  256. package/lib/commonjs/mol-repr/visual.js.map +1 -1
  257. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +5 -5
  258. package/lib/commonjs/mol-repr/volume/registry.d.ts +3 -3
  259. package/lib/commonjs/mol-repr/volume/representation.d.ts +1 -1
  260. package/lib/commonjs/mol-repr/volume/representation.js +12 -3
  261. package/lib/commonjs/mol-repr/volume/representation.js.map +1 -1
  262. package/lib/commonjs/mol-repr/volume/slice.d.ts +6 -6
  263. package/lib/commonjs/mol-state/state.js +7 -5
  264. package/lib/commonjs/mol-state/state.js.map +1 -1
  265. package/lib/commonjs/mol-task/execution/observable.js +1 -5
  266. package/lib/commonjs/mol-task/execution/observable.js.map +1 -1
  267. package/lib/commonjs/mol-theme/color/atom-id.d.ts +12 -12
  268. package/lib/commonjs/mol-theme/color/chain-id.d.ts +12 -12
  269. package/lib/commonjs/mol-theme/color/element-index.d.ts +12 -12
  270. package/lib/commonjs/mol-theme/color/element-symbol.d.ts +12 -12
  271. package/lib/commonjs/mol-theme/color/entity-id.d.ts +12 -12
  272. package/lib/commonjs/mol-theme/color/entity-source.d.ts +12 -12
  273. package/lib/commonjs/mol-theme/color/illustrative.d.ts +12 -12
  274. package/lib/commonjs/mol-theme/color/model-index.d.ts +12 -12
  275. package/lib/commonjs/mol-theme/color/operator-hkl.d.ts +12 -12
  276. package/lib/commonjs/mol-theme/color/operator-name.d.ts +12 -12
  277. package/lib/commonjs/mol-theme/color/polymer-id.d.ts +12 -12
  278. package/lib/commonjs/mol-theme/color/polymer-index.d.ts +12 -12
  279. package/lib/commonjs/mol-theme/color/unit-index.d.ts +12 -12
  280. package/lib/commonjs/mol-theme/color.d.ts +78 -78
  281. package/lib/commonjs/mol-util/color/lists.d.ts +3 -3
  282. package/lib/commonjs/mol-util/color/palette.d.ts +13 -13
  283. package/lib/commonjs/mol-util/color/scale.d.ts +1 -1
  284. package/lib/commonjs/servers/model/config.d.ts +2 -2
  285. package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +3 -3
  286. package/lib/extensions/geo-export/controls.js +1 -1
  287. package/lib/extensions/geo-export/controls.js.map +1 -1
  288. package/lib/extensions/geo-export/glb-exporter.d.ts +1 -0
  289. package/lib/extensions/geo-export/glb-exporter.js +27 -17
  290. package/lib/extensions/geo-export/glb-exporter.js.map +1 -1
  291. package/lib/extensions/geo-export/mesh-exporter.d.ts +31 -2
  292. package/lib/extensions/geo-export/mesh-exporter.js +87 -15
  293. package/lib/extensions/geo-export/mesh-exporter.js.map +1 -1
  294. package/lib/extensions/geo-export/obj-exporter.d.ts +1 -0
  295. package/lib/extensions/geo-export/obj-exporter.js +24 -15
  296. package/lib/extensions/geo-export/obj-exporter.js.map +1 -1
  297. package/lib/extensions/geo-export/ui.js +24 -20
  298. package/lib/extensions/geo-export/ui.js.map +1 -1
  299. package/lib/extensions/geo-export/usdz-exporter.d.ts +1 -0
  300. package/lib/extensions/geo-export/usdz-exporter.js +26 -16
  301. package/lib/extensions/geo-export/usdz-exporter.js.map +1 -1
  302. package/lib/extensions/mp4-export/controls.js +1 -1
  303. package/lib/extensions/mp4-export/controls.js.map +1 -1
  304. package/lib/extensions/mp4-export/ui.js +7 -6
  305. package/lib/extensions/mp4-export/ui.js.map +1 -1
  306. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +3 -3
  307. package/lib/extensions/rcsb/graphql/types.d.ts +22 -21
  308. package/lib/extensions/rcsb/validation-report/representation.d.ts +5 -5
  309. package/lib/mol-canvas3d/canvas3d.d.ts +4 -4
  310. package/lib/mol-canvas3d/helper/camera-helper.d.ts +2 -2
  311. package/lib/mol-canvas3d/passes/draw.js +3 -11
  312. package/lib/mol-canvas3d/passes/draw.js.map +1 -1
  313. package/lib/mol-canvas3d/passes/image.d.ts +2 -2
  314. package/lib/mol-data/int/impl/ordered-set.d.ts +3 -3
  315. package/lib/mol-data/int/impl/sorted-array.d.ts +1 -1
  316. package/lib/mol-geo/geometry/base.d.ts +13 -1
  317. package/lib/mol-geo/geometry/base.js +34 -1
  318. package/lib/mol-geo/geometry/base.js.map +1 -1
  319. package/lib/mol-geo/geometry/image/image.d.ts +2 -2
  320. package/lib/mol-geo/geometry/mesh/color-smoothing.d.ts +10 -3
  321. package/lib/mol-geo/geometry/mesh/color-smoothing.js +150 -34
  322. package/lib/mol-geo/geometry/mesh/color-smoothing.js.map +1 -1
  323. package/lib/mol-geo/geometry/overpaint-data.d.ts +7 -2
  324. package/lib/mol-geo/geometry/overpaint-data.js +11 -2
  325. package/lib/mol-geo/geometry/overpaint-data.js.map +1 -1
  326. package/lib/mol-geo/geometry/points/points.d.ts +2 -2
  327. package/lib/mol-geo/geometry/spheres/spheres.d.ts +0 -1
  328. package/lib/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +7 -3
  329. package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js +158 -26
  330. package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js.map +1 -1
  331. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +3 -1
  332. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -1
  333. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  334. package/lib/mol-geo/geometry/transparency-data.d.ts +7 -2
  335. package/lib/mol-geo/geometry/transparency-data.js +11 -2
  336. package/lib/mol-geo/geometry/transparency-data.js.map +1 -1
  337. package/lib/mol-gl/compute/copy.d.ts +20 -0
  338. package/lib/mol-gl/compute/copy.js +24 -0
  339. package/lib/mol-gl/compute/copy.js.map +1 -0
  340. package/lib/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  341. package/lib/mol-gl/compute/marching-cubes/isosurface.js.map +1 -1
  342. package/lib/mol-gl/compute/util.d.ts +25 -6
  343. package/lib/mol-gl/compute/util.js +74 -21
  344. package/lib/mol-gl/compute/util.js.map +1 -1
  345. package/lib/mol-gl/renderable/cylinders.d.ts +8 -0
  346. package/lib/mol-gl/renderable/direct-volume.d.ts +8 -0
  347. package/lib/mol-gl/renderable/image.d.ts +8 -0
  348. package/lib/mol-gl/renderable/lines.d.ts +8 -0
  349. package/lib/mol-gl/renderable/mesh.d.ts +8 -0
  350. package/lib/mol-gl/renderable/points.d.ts +8 -0
  351. package/lib/mol-gl/renderable/schema.d.ts +16 -0
  352. package/lib/mol-gl/renderable/schema.js +8 -0
  353. package/lib/mol-gl/renderable/schema.js.map +1 -1
  354. package/lib/mol-gl/renderable/spheres.d.ts +8 -0
  355. package/lib/mol-gl/renderable/text.d.ts +8 -0
  356. package/lib/mol-gl/renderable/texture-mesh.d.ts +22 -13
  357. package/lib/mol-gl/renderable/texture-mesh.js +2 -2
  358. package/lib/mol-gl/renderable/texture-mesh.js.map +1 -1
  359. package/lib/mol-gl/renderer.d.ts +2 -2
  360. package/lib/mol-gl/renderer.js +3 -0
  361. package/lib/mol-gl/renderer.js.map +1 -1
  362. package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  363. package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  364. package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js.map +1 -1
  365. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  366. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  367. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
  368. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  369. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  370. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js.map +1 -1
  371. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.frag.d.ts +1 -1
  372. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +1 -1
  373. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.frag.js.map +1 -1
  374. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
  375. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
  376. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.js.map +1 -1
  377. package/lib/mol-gl/shader/compute/color-smoothing/normalize.frag.d.ts +1 -1
  378. package/lib/mol-gl/shader/compute/color-smoothing/normalize.frag.js +1 -1
  379. package/lib/mol-gl/shader/compute/color-smoothing/normalize.frag.js.map +1 -1
  380. package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  381. package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
  382. package/lib/mol-gl/shader/direct-volume.frag.js.map +1 -1
  383. package/lib/mol-gl/shader/mesh.vert.d.ts +1 -1
  384. package/lib/mol-gl/shader/mesh.vert.js +1 -1
  385. package/lib/mol-gl/shader/mesh.vert.js.map +1 -1
  386. package/lib/mol-gl/webgl/extensions.js +2 -6
  387. package/lib/mol-gl/webgl/extensions.js.map +1 -1
  388. package/lib/mol-gl/webgl/render-item.d.ts +1 -1
  389. package/lib/mol-gl/webgl/resources.js +1 -1
  390. package/lib/mol-gl/webgl/resources.js.map +1 -1
  391. package/lib/mol-gl/webgl/vertex-array.d.ts +3 -2
  392. package/lib/mol-gl/webgl/vertex-array.js +9 -2
  393. package/lib/mol-gl/webgl/vertex-array.js.map +1 -1
  394. package/lib/mol-io/common/typed-array.d.ts +1 -1
  395. package/lib/mol-io/reader/_spec/sdf.spec.js +51 -0
  396. package/lib/mol-io/reader/_spec/sdf.spec.js.map +1 -1
  397. package/lib/mol-io/reader/cif/schema/bird.d.ts +2 -2
  398. package/lib/mol-io/reader/cif/schema/bird.js +1 -1
  399. package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
  400. package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
  401. package/lib/mol-io/reader/cif/schema/cif-core.d.ts +8 -5
  402. package/lib/mol-io/reader/cif/schema/cif-core.js +15 -5
  403. package/lib/mol-io/reader/cif/schema/cif-core.js.map +1 -1
  404. package/lib/mol-io/reader/cif/schema/mmcif-extras.d.ts +1 -1
  405. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +13 -13
  406. package/lib/mol-io/reader/cif/schema/mmcif.js +1 -1
  407. package/lib/mol-io/reader/ply/schema.d.ts +1 -1
  408. package/lib/mol-io/reader/sdf/parser-v3-util.d.ts +9 -0
  409. package/lib/mol-io/reader/sdf/parser-v3-util.js +84 -0
  410. package/lib/mol-io/reader/sdf/parser-v3-util.js.map +1 -0
  411. package/lib/mol-io/reader/sdf/parser.d.ts +1 -1
  412. package/lib/mol-io/reader/sdf/parser.js +12 -4
  413. package/lib/mol-io/reader/sdf/parser.js.map +1 -1
  414. package/lib/mol-model/loci.d.ts +20 -20
  415. package/lib/mol-model/shape/shape.d.ts +1 -1
  416. package/lib/mol-model/structure/structure/properties.d.ts +2 -2
  417. package/lib/mol-model/structure/structure/properties.js +5 -5
  418. package/lib/mol-model/structure/structure/properties.js.map +1 -1
  419. package/lib/mol-model/structure/structure/unit.d.ts +2 -2
  420. package/lib/mol-model-formats/shape/ply.d.ts +8 -8
  421. package/lib/mol-model-formats/structure/basic/schema.d.ts +5 -5
  422. package/lib/mol-model-formats/structure/common/component.d.ts +5 -5
  423. package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -1
  424. package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -1
  425. package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -3
  426. package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -4
  427. package/lib/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
  428. package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -1
  429. package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +10 -10
  430. package/lib/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +5 -5
  431. package/lib/mol-plugin/commands.d.ts +2 -2
  432. package/lib/mol-plugin/layout.d.ts +4 -4
  433. package/lib/mol-plugin/util/viewport-screenshot.d.ts +6 -6
  434. package/lib/mol-plugin/version.js +2 -2
  435. package/lib/mol-plugin-state/actions/file.js +4 -2
  436. package/lib/mol-plugin-state/actions/file.js.map +1 -1
  437. package/lib/mol-plugin-state/animation/built-in/model-index.d.ts +3 -3
  438. package/lib/mol-plugin-state/animation/helpers.d.ts +5 -5
  439. package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +2 -2
  440. package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +2 -2
  441. package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +7 -7
  442. package/lib/mol-plugin-state/formats/volume.d.ts +4 -4
  443. package/lib/mol-plugin-state/formats/volume.js +1 -0
  444. package/lib/mol-plugin-state/formats/volume.js.map +1 -1
  445. package/lib/mol-plugin-state/helpers/root-structure.d.ts +2 -2
  446. package/lib/mol-plugin-state/helpers/structure-component.d.ts +1 -1
  447. package/lib/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
  448. package/lib/mol-plugin-state/helpers/structure-selection-query.js +14 -3
  449. package/lib/mol-plugin-state/helpers/structure-selection-query.js.map +1 -1
  450. package/lib/mol-plugin-state/manager/interactivity.d.ts +1 -1
  451. package/lib/mol-plugin-state/manager/snapshots.js +2 -1
  452. package/lib/mol-plugin-state/manager/snapshots.js.map +1 -1
  453. package/lib/mol-plugin-state/manager/structure/component.d.ts +2 -2
  454. package/lib/mol-plugin-state/transforms/data.d.ts +1 -1
  455. package/lib/mol-plugin-state/transforms/model.d.ts +4 -4
  456. package/lib/mol-plugin-state/transforms/representation.d.ts +8 -8
  457. package/lib/mol-plugin-state/transforms/representation.js +41 -15
  458. package/lib/mol-plugin-state/transforms/representation.js.map +1 -1
  459. package/lib/mol-plugin-ui/state/common.js +10 -9
  460. package/lib/mol-plugin-ui/state/common.js.map +1 -1
  461. package/lib/mol-plugin-ui/state/snapshots.js +10 -8
  462. package/lib/mol-plugin-ui/state/snapshots.js.map +1 -1
  463. package/lib/mol-plugin-ui/structure/selection.d.ts +1 -1
  464. package/lib/mol-plugin-ui/structure/selection.js +2 -1
  465. package/lib/mol-plugin-ui/structure/selection.js.map +1 -1
  466. package/lib/mol-repr/representation.d.ts +9 -0
  467. package/lib/mol-repr/representation.js +43 -4
  468. package/lib/mol-repr/representation.js.map +1 -1
  469. package/lib/mol-repr/shape/loci/distance.d.ts +1 -1
  470. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -1
  471. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -1
  472. package/lib/mol-repr/shape/representation.js +5 -0
  473. package/lib/mol-repr/shape/representation.js.map +1 -1
  474. package/lib/mol-repr/structure/complex-representation.js +11 -4
  475. package/lib/mol-repr/structure/complex-representation.js.map +1 -1
  476. package/lib/mol-repr/structure/complex-visual.d.ts +6 -6
  477. package/lib/mol-repr/structure/complex-visual.js +11 -5
  478. package/lib/mol-repr/structure/complex-visual.js.map +1 -1
  479. package/lib/mol-repr/structure/params.d.ts +3 -3
  480. package/lib/mol-repr/structure/registry.d.ts +31 -31
  481. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -3
  482. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +12 -12
  483. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -3
  484. package/lib/mol-repr/structure/representation/cartoon.d.ts +6 -6
  485. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +12 -12
  486. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +9 -9
  487. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -3
  488. package/lib/mol-repr/structure/representation/label.d.ts +6 -6
  489. package/lib/mol-repr/structure/representation/line.d.ts +15 -15
  490. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +9 -9
  491. package/lib/mol-repr/structure/representation/orientation.d.ts +3 -3
  492. package/lib/mol-repr/structure/representation/point.d.ts +6 -6
  493. package/lib/mol-repr/structure/representation/putty.d.ts +3 -3
  494. package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -3
  495. package/lib/mol-repr/structure/units-representation.js +15 -15
  496. package/lib/mol-repr/structure/units-representation.js.map +1 -1
  497. package/lib/mol-repr/structure/units-visual.d.ts +9 -9
  498. package/lib/mol-repr/structure/units-visual.js +11 -5
  499. package/lib/mol-repr/structure/units-visual.js.map +1 -1
  500. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +8 -8
  501. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +4 -4
  502. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +8 -8
  503. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +4 -4
  504. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -1
  505. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -1
  506. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -1
  507. package/lib/mol-repr/structure/visual/element-cross.d.ts +1 -1
  508. package/lib/mol-repr/structure/visual/element-point.d.ts +2 -2
  509. package/lib/mol-repr/structure/visual/element-sphere.d.ts +2 -2
  510. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -1
  511. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -2
  512. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +12 -12
  513. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -7
  514. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js.map +1 -1
  515. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
  516. package/lib/mol-repr/structure/visual/label-text.d.ts +2 -2
  517. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +3 -3
  518. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +3 -2
  519. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js.map +1 -1
  520. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
  521. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -1
  522. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -1
  523. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -1
  524. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -2
  525. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -2
  526. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -1
  527. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -1
  528. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +4 -4
  529. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -1
  530. package/lib/mol-repr/structure/visual/util/bond.d.ts +18 -18
  531. package/lib/mol-repr/structure/visual/util/common.d.ts +2 -2
  532. package/lib/mol-repr/visual.d.ts +21 -13
  533. package/lib/mol-repr/visual.js +53 -6
  534. package/lib/mol-repr/visual.js.map +1 -1
  535. package/lib/mol-repr/volume/direct-volume.d.ts +2 -2
  536. package/lib/mol-repr/volume/registry.d.ts +2 -2
  537. package/lib/mol-repr/volume/representation.d.ts +1 -1
  538. package/lib/mol-repr/volume/representation.js +12 -3
  539. package/lib/mol-repr/volume/representation.js.map +1 -1
  540. package/lib/mol-repr/volume/slice.d.ts +6 -6
  541. package/lib/mol-state/state.js +7 -5
  542. package/lib/mol-state/state.js.map +1 -1
  543. package/lib/mol-task/execution/observable.js +1 -5
  544. package/lib/mol-task/execution/observable.js.map +1 -1
  545. package/lib/mol-theme/color/element-symbol.d.ts +4 -4
  546. package/lib/mol-theme/color.d.ts +2 -2
  547. package/lib/mol-util/color/palette.d.ts +1 -1
  548. package/lib/mol-util/color/scale.d.ts +1 -1
  549. package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
  550. package/package.json +26 -26

There are too many changes on this page to be displayed.


The amount of changes on this page would crash your brower.

You can still verify the content by downloading the package file manually.