fhirsmith 0.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (277) hide show
  1. package/CHANGELOG.md +42 -0
  2. package/FHIRsmith.png +0 -0
  3. package/README.md +277 -0
  4. package/config-template.json +144 -0
  5. package/library/folder-setup.js +58 -0
  6. package/library/html-server.js +166 -0
  7. package/library/html.js +835 -0
  8. package/library/i18nsupport.js +259 -0
  9. package/library/languages.js +779 -0
  10. package/library/logger-telnet.js +205 -0
  11. package/library/logger.js +279 -0
  12. package/library/package-manager.js +876 -0
  13. package/library/utilities.js +196 -0
  14. package/library/version-utilities.js +1056 -0
  15. package/npmprojector/config-example.json +13 -0
  16. package/npmprojector/indexer.js +394 -0
  17. package/npmprojector/npmprojector.js +395 -0
  18. package/npmprojector/readme.md +174 -0
  19. package/npmprojector/watcher.js +335 -0
  20. package/package.json +119 -0
  21. package/packages/package-crawler.js +846 -0
  22. package/packages/packages-template.html +126 -0
  23. package/packages/packages.js +2838 -0
  24. package/passwords.ini +2 -0
  25. package/publisher/publisher-template.html +208 -0
  26. package/publisher/publisher.js +2167 -0
  27. package/publisher/task-draft.js +458 -0
  28. package/registry/api.js +735 -0
  29. package/registry/crawler.js +637 -0
  30. package/registry/model.js +513 -0
  31. package/registry/readme.md +243 -0
  32. package/registry/registry-data.json +121015 -0
  33. package/registry/registry-template.html +126 -0
  34. package/registry/registry.js +1395 -0
  35. package/registry/test-runner.js +237 -0
  36. package/root-template.html +124 -0
  37. package/server.js +524 -0
  38. package/shl/private-key.pem +5 -0
  39. package/shl/public-key.pem +18 -0
  40. package/shl/shl.js +1125 -0
  41. package/shl/vhl.js +69 -0
  42. package/static/FHIRsmith128.png +0 -0
  43. package/static/FHIRsmith16.png +0 -0
  44. package/static/FHIRsmith32.png +0 -0
  45. package/static/FHIRsmith64.png +0 -0
  46. package/static/assets/css/bootstrap-fhir.css +5302 -0
  47. package/static/assets/css/bootstrap-glyphicons.css +2 -0
  48. package/static/assets/css/bootstrap.css +4097 -0
  49. package/static/assets/css/jquery-ui.css +523 -0
  50. package/static/assets/css/jquery-ui.structure.css +863 -0
  51. package/static/assets/css/jquery-ui.structure.min.css +5 -0
  52. package/static/assets/css/jquery-ui.theme.css +439 -0
  53. package/static/assets/css/jquery-ui.theme.min.css +5 -0
  54. package/static/assets/css/jquery.ui.all.css +7 -0
  55. package/static/assets/css/modules.css +18 -0
  56. package/static/assets/css/project.css +367 -0
  57. package/static/assets/css/pygments-manni.css +66 -0
  58. package/static/assets/css/tags.css +74 -0
  59. package/static/assets/css/xml.css +2 -0
  60. package/static/assets/fonts/glyphiconshalflings-regular.eot +0 -0
  61. package/static/assets/fonts/glyphiconshalflings-regular.otf +0 -0
  62. package/static/assets/fonts/glyphiconshalflings-regular.svg +175 -0
  63. package/static/assets/fonts/glyphiconshalflings-regular.ttf +0 -0
  64. package/static/assets/fonts/glyphiconshalflings-regular.woff +0 -0
  65. package/static/assets/ico/apple-touch-icon-114-precomposed.png +0 -0
  66. package/static/assets/ico/apple-touch-icon-144-precomposed.png +0 -0
  67. package/static/assets/ico/apple-touch-icon-57-precomposed.png +0 -0
  68. package/static/assets/ico/apple-touch-icon-72-precomposed.png +0 -0
  69. package/static/assets/ico/favicon.ico +0 -0
  70. package/static/assets/ico/favicon.png +0 -0
  71. package/static/assets/images/fhir-logo-www.png +0 -0
  72. package/static/assets/images/fhir-logo.png +0 -0
  73. package/static/assets/images/hl7-logo.png +0 -0
  74. package/static/assets/images/logo_ansinew.jpg +0 -0
  75. package/static/assets/images/search.png +0 -0
  76. package/static/assets/images/stripe.png +0 -0
  77. package/static/assets/images/target.png +0 -0
  78. package/static/assets/images/tx-registry-root.gif +0 -0
  79. package/static/assets/images/tx-registry.png +0 -0
  80. package/static/assets/images/tx-server.png +0 -0
  81. package/static/assets/images/tx-version.png +0 -0
  82. package/static/assets/js/bootstrap.min.js +6 -0
  83. package/static/assets/js/fhir-gw.js +259 -0
  84. package/static/assets/js/fhir.js +2 -0
  85. package/static/assets/js/html5shiv.js +8 -0
  86. package/static/assets/js/jcookie.js +96 -0
  87. package/static/assets/js/jquery-ui.min.js +6 -0
  88. package/static/assets/js/jquery.js +10716 -0
  89. package/static/assets/js/jquery.min.js +2 -0
  90. package/static/assets/js/jquery.ui.core.js +314 -0
  91. package/static/assets/js/jquery.ui.draggable.js +825 -0
  92. package/static/assets/js/jquery.ui.mouse.js +162 -0
  93. package/static/assets/js/jquery.ui.resizable.js +842 -0
  94. package/static/assets/js/jquery.ui.widget.js +268 -0
  95. package/static/assets/js/json2.js +487 -0
  96. package/static/assets/js/jtip.js +97 -0
  97. package/static/assets/js/respond.min.js +6 -0
  98. package/static/assets/js/statuspage.js +70 -0
  99. package/static/assets/js/xml.js +2 -0
  100. package/static/dist/js/bootstrap.js +1964 -0
  101. package/static/favicon.png +0 -0
  102. package/static/fhir.css +626 -0
  103. package/static/icon-fhir-16.png +0 -0
  104. package/static/images/ui-bg_diagonals-thick_18_b81900_40x40.png +0 -0
  105. package/static/images/ui-bg_diagonals-thick_20_666666_40x40.png +0 -0
  106. package/static/images/ui-bg_flat_10_000000_40x100.png +0 -0
  107. package/static/images/ui-bg_glass_100_f6f6f6_1x400.png +0 -0
  108. package/static/images/ui-bg_glass_100_fdf5ce_1x400.png +0 -0
  109. package/static/images/ui-bg_glass_65_ffffff_1x400.png +0 -0
  110. package/static/images/ui-bg_gloss-wave_35_f6a828_500x100.png +0 -0
  111. package/static/images/ui-bg_highlight-soft_100_eeeeee_1x100.png +0 -0
  112. package/static/images/ui-bg_highlight-soft_75_ffe45c_1x100.png +0 -0
  113. package/static/images/ui-icons_222222_256x240.png +0 -0
  114. package/static/images/ui-icons_228ef1_256x240.png +0 -0
  115. package/static/images/ui-icons_ef8c08_256x240.png +0 -0
  116. package/static/images/ui-icons_ffd27a_256x240.png +0 -0
  117. package/static/images/ui-icons_ffffff_256x240.png +0 -0
  118. package/static/js/jquery.effects.blind.js +49 -0
  119. package/static/js/jquery.effects.bounce.js +78 -0
  120. package/static/js/jquery.effects.clip.js +54 -0
  121. package/static/js/jquery.effects.core.js +763 -0
  122. package/static/js/jquery.effects.drop.js +50 -0
  123. package/static/js/jquery.effects.explode.js +79 -0
  124. package/static/js/jquery.effects.fade.js +32 -0
  125. package/static/js/jquery.effects.fold.js +56 -0
  126. package/static/js/jquery.effects.highlight.js +50 -0
  127. package/static/js/jquery.effects.pulsate.js +51 -0
  128. package/static/js/jquery.effects.scale.js +178 -0
  129. package/static/js/jquery.effects.shake.js +57 -0
  130. package/static/js/jquery.effects.slide.js +50 -0
  131. package/static/js/jquery.effects.transfer.js +45 -0
  132. package/static/js/jquery.ui.accordion.js +611 -0
  133. package/static/js/jquery.ui.autocomplete.js +612 -0
  134. package/static/js/jquery.ui.button.js +416 -0
  135. package/static/js/jquery.ui.datepicker.js +1823 -0
  136. package/static/js/jquery.ui.dialog.js +878 -0
  137. package/static/js/jquery.ui.droppable.js +296 -0
  138. package/static/js/jquery.ui.position.js +252 -0
  139. package/static/js/jquery.ui.progressbar.js +109 -0
  140. package/static/js/jquery.ui.selectable.js +266 -0
  141. package/static/js/jquery.ui.slider.js +666 -0
  142. package/static/js/jquery.ui.sortable.js +1077 -0
  143. package/static/js/jquery.ui.tabs.js +758 -0
  144. package/stats.js +80 -0
  145. package/test-cache/vsac/vsac-valuesets.db +0 -0
  146. package/token/nginx_passport_setup.md +383 -0
  147. package/token/security_guide.md +294 -0
  148. package/token/token-template.html +330 -0
  149. package/token/token.js +1300 -0
  150. package/translations/Messages.properties +1510 -0
  151. package/translations/Messages_ar.properties +1399 -0
  152. package/translations/Messages_de.properties +836 -0
  153. package/translations/Messages_es.properties +737 -0
  154. package/translations/Messages_fr.properties +1 -0
  155. package/translations/Messages_ja.properties +893 -0
  156. package/translations/Messages_nl.properties +1357 -0
  157. package/translations/Messages_pt.properties +1302 -0
  158. package/translations/Messages_ru.properties +1 -0
  159. package/translations/Messages_uz.properties +1 -0
  160. package/translations/Messages_zh.properties +1 -0
  161. package/translations/rendering-phrases.properties +1128 -0
  162. package/translations/rendering-phrases_ar.properties +1091 -0
  163. package/translations/rendering-phrases_de.properties +6 -0
  164. package/translations/rendering-phrases_es.properties +6 -0
  165. package/translations/rendering-phrases_fr.properties +624 -0
  166. package/translations/rendering-phrases_ja.properties +21 -0
  167. package/translations/rendering-phrases_nl.properties +970 -0
  168. package/translations/rendering-phrases_pt.properties +1020 -0
  169. package/translations/rendering-phrases_ru.properties +1094 -0
  170. package/translations/rendering-phrases_uz.properties +1 -0
  171. package/translations/rendering-phrases_zh.properties +1 -0
  172. package/tx/README.md +418 -0
  173. package/tx/cm/cm-api.js +110 -0
  174. package/tx/cm/cm-database.js +735 -0
  175. package/tx/cm/cm-package.js +325 -0
  176. package/tx/cs/cs-api.js +789 -0
  177. package/tx/cs/cs-areacode.js +615 -0
  178. package/tx/cs/cs-country.js +1110 -0
  179. package/tx/cs/cs-cpt.js +785 -0
  180. package/tx/cs/cs-cs.js +1579 -0
  181. package/tx/cs/cs-currency.js +539 -0
  182. package/tx/cs/cs-db.js +1321 -0
  183. package/tx/cs/cs-hgvs.js +329 -0
  184. package/tx/cs/cs-lang.js +465 -0
  185. package/tx/cs/cs-loinc.js +1485 -0
  186. package/tx/cs/cs-mimetypes.js +238 -0
  187. package/tx/cs/cs-ndc.js +704 -0
  188. package/tx/cs/cs-omop.js +1025 -0
  189. package/tx/cs/cs-provider-api.js +43 -0
  190. package/tx/cs/cs-provider-list.js +37 -0
  191. package/tx/cs/cs-rxnorm.js +808 -0
  192. package/tx/cs/cs-snomed.js +1102 -0
  193. package/tx/cs/cs-ucum.js +514 -0
  194. package/tx/cs/cs-unii.js +271 -0
  195. package/tx/cs/cs-uri.js +218 -0
  196. package/tx/cs/cs-usstates.js +305 -0
  197. package/tx/dev.fhir.org.yml +14 -0
  198. package/tx/fixtures/test-cases-setup.json +18 -0
  199. package/tx/fixtures/test-cases.yml +16 -0
  200. package/tx/html/codesystem-operations.liquid +25 -0
  201. package/tx/html/home-metrics.liquid +247 -0
  202. package/tx/html/operations-form.liquid +148 -0
  203. package/tx/html/search-form.liquid +62 -0
  204. package/tx/html/tx-template.html +133 -0
  205. package/tx/html/valueset-operations.liquid +54 -0
  206. package/tx/importers/atc-to-fhir.js +316 -0
  207. package/tx/importers/import-loinc.module.js +1536 -0
  208. package/tx/importers/import-ndc.module.js +1088 -0
  209. package/tx/importers/import-rxnorm.module.js +898 -0
  210. package/tx/importers/import-sct.module.js +2457 -0
  211. package/tx/importers/import-unii.module.js +601 -0
  212. package/tx/importers/readme.md +453 -0
  213. package/tx/importers/subset-loinc.module.js +1081 -0
  214. package/tx/importers/subset-rxnorm.module.js +938 -0
  215. package/tx/importers/tx-import-base.js +351 -0
  216. package/tx/importers/tx-import-settings.js +310 -0
  217. package/tx/importers/tx-import.js +357 -0
  218. package/tx/library/canonical-resource.js +88 -0
  219. package/tx/library/capabilitystatement.js +292 -0
  220. package/tx/library/codesystem.js +774 -0
  221. package/tx/library/conceptmap.js +568 -0
  222. package/tx/library/designations.js +932 -0
  223. package/tx/library/errors.js +77 -0
  224. package/tx/library/extensions.js +117 -0
  225. package/tx/library/namingsystem.js +322 -0
  226. package/tx/library/operation-outcome.js +127 -0
  227. package/tx/library/parameters.js +105 -0
  228. package/tx/library/renderer.js +1559 -0
  229. package/tx/library/terminologycapabilities.js +418 -0
  230. package/tx/library/ucum-parsers.js +1029 -0
  231. package/tx/library/ucum-service.js +370 -0
  232. package/tx/library/ucum-types.js +1099 -0
  233. package/tx/library/valueset.js +543 -0
  234. package/tx/library.js +676 -0
  235. package/tx/ocl/cm-ocl.js +106 -0
  236. package/tx/ocl/cs-ocl.js +39 -0
  237. package/tx/ocl/vs-ocl.js +105 -0
  238. package/tx/operation-context.js +568 -0
  239. package/tx/params.js +613 -0
  240. package/tx/provider.js +403 -0
  241. package/tx/sct/ecl.js +1560 -0
  242. package/tx/sct/expressions.js +2077 -0
  243. package/tx/sct/structures.js +1396 -0
  244. package/tx/tx-html.js +1063 -0
  245. package/tx/tx.fhir.org.yml +39 -0
  246. package/tx/tx.js +927 -0
  247. package/tx/vs/vs-api.js +112 -0
  248. package/tx/vs/vs-database.js +786 -0
  249. package/tx/vs/vs-package.js +358 -0
  250. package/tx/vs/vs-vsac.js +366 -0
  251. package/tx/workers/batch-validate.js +129 -0
  252. package/tx/workers/batch.js +361 -0
  253. package/tx/workers/closure.js +32 -0
  254. package/tx/workers/expand.js +1845 -0
  255. package/tx/workers/lookup.js +407 -0
  256. package/tx/workers/metadata.js +467 -0
  257. package/tx/workers/operations.js +34 -0
  258. package/tx/workers/read.js +164 -0
  259. package/tx/workers/search.js +384 -0
  260. package/tx/workers/subsumes.js +334 -0
  261. package/tx/workers/translate.js +492 -0
  262. package/tx/workers/validate.js +2504 -0
  263. package/tx/workers/worker.js +904 -0
  264. package/tx/xml/capabilitystatement-xml.js +63 -0
  265. package/tx/xml/codesystem-xml.js +62 -0
  266. package/tx/xml/conceptmap-xml.js +65 -0
  267. package/tx/xml/namingsystem-xml.js +65 -0
  268. package/tx/xml/operationoutcome-xml.js +127 -0
  269. package/tx/xml/parameters-xml.js +312 -0
  270. package/tx/xml/terminologycapabilities-xml.js +64 -0
  271. package/tx/xml/valueset-xml.js +64 -0
  272. package/tx/xml/xml-base.js +603 -0
  273. package/vcl/vcl-parser.js +1098 -0
  274. package/vcl/vcl.js +253 -0
  275. package/windows-install.js +19 -0
  276. package/xig/xig-template.html +124 -0
  277. package/xig/xig.js +3049 -0
@@ -0,0 +1,238 @@
1
+ const { CodeSystemProvider, CodeSystemFactoryProvider} = require('./cs-api');
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+ const assert = require('assert');
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+ const { CodeSystem } = require("../library/codesystem");
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+
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+ class MimeTypeConcept {
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+ constructor(code) {
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+ this.code = code;
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+ this.mimeType = this.#parseMimeType(code);
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+ }
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+
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+ #parseMimeType(code) {
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+ // Basic MIME type parsing - type/subtype with optional parameters
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+ const trimmed = code.trim();
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+ const parts = trimmed.split(';')[0].trim(); // Remove parameters for validation
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+ const typeParts = parts.split('/');
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+
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+ if (typeParts.length === 2 && typeParts[0] && typeParts[1]) {
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+ return {
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+ type: typeParts[0],
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+ subtype: typeParts[1],
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+ isValid: true,
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+ source: trimmed
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+ };
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+ }
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+
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+ return {
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+ type: '',
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+ subtype: '',
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+ isValid: false,
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+ source: trimmed
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+ };
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+ }
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+
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+ isValid() {
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+ return this.mimeType.isValid && !!this.mimeType.subtype;
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+ }
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+ }
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+
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+ class MimeTypeServices extends CodeSystemProvider {
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+ constructor(opContext, supplements) {
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+ super(opContext, supplements);
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+ }
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+
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+ // Metadata methods
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+ system() {
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+ return 'urn:ietf:bcp:13'; // BCP 13 defines MIME types
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+ }
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+
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+ version() {
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+ return null;
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+ }
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+
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+ description() {
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+ return 'Mime Types';
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+ }
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+
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+ name() {
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+ return 'Mime Types';
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+ }
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+
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+ totalCount() {
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+ return -1; // Not bounded - infinite possible MIME types
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+ }
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+
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+ hasParents() {
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+ return false; // No hierarchical relationships
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+ }
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+
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+ hasAnyDisplays(languages) {
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+ const langs = this._ensureLanguages(languages);
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+ if (this._hasAnySupplementDisplays(langs)) {
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+ return true;
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+ }
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+ return false; // MIME types don't have displays by default
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+ }
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+
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+ // Core concept methods
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+ async code(code) {
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+
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+ const ctxt = await this.#ensureContext(code);
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+ return ctxt ? ctxt.code : null;
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+ }
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+
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+ async display(code) {
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+
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+ const ctxt = await this.#ensureContext(code);
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+ if (!ctxt) {
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+ return null;
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+ }
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+
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+ // Check supplements first
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+ const suppDisplay = this._displayFromSupplements(ctxt.code);
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+ if (suppDisplay) {
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+ return suppDisplay;
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+ }
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+
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+ // Default display is the code itself, trimmed
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+ return ctxt.code.trim();
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+ }
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+
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+ async definition(code) {
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+
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+ await this.#ensureContext(code);
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+ return null; // No definitions provided
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+ }
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+
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+ async isAbstract(code) {
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+
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+ await this.#ensureContext(code);
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+ return false; // MIME types are not abstract
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+ }
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+
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+ async isInactive(code) {
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+
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+ await this.#ensureContext(code);
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+ return false; // MIME types are not inactive
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+ }
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+
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+ async isDeprecated(code) {
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+
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+ await this.#ensureContext(code);
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+ return false; // MIME types are not deprecated
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+ }
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+
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+ async designations(code, displays) {
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+
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+ const ctxt = await this.#ensureContext(code);
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+ if (ctxt != null) {
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+ const display = await this.display(ctxt);
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+ if (display) {
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+ !displays.addDesignation(true, 'active', 'en', CodeSystem.makeUseForDisplay(), display);
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+ }
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+ this._listSupplementDesignations(ctxt.code, displays);
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+ }
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+ }
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+
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+ async #ensureContext(code) {
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+ if (!code) {
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+ return code;
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+ }
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+ if (typeof code === 'string') {
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+ const ctxt = await this.locate(code);
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+ if (!ctxt.context) {
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+ throw new Error(ctxt.message ? ctxt.message : `Invalid MIME type '${code}'`);
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+ } else {
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+ return ctxt.context;
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+ }
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+ }
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+ if (code instanceof MimeTypeConcept) {
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+ return code;
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+ }
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+ throw new Error("Unknown Type at #ensureContext: " + (typeof code));
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+ }
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+
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+ // Lookup methods
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+ async locate(code) {
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+
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+ assert(!code || typeof code === 'string', 'code must be string');
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+ if (!code) return { context: null, message: 'Empty code' };
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+
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+ const concept = new MimeTypeConcept(code);
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+ if (concept.isValid()) {
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+ return { context: concept, message: null };
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+ }
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+
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+ return { context: null, message: undefined};
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+ }
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+
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+ // Subsumption - not supported
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+ async subsumesTest(codeA, codeB) {
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+
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+ await this.#ensureContext(codeA);
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+ await this.#ensureContext(codeB);
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+ return 'not-subsumed'; // No subsumption relationships
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+ }
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+
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+ async locateIsA(code, parent) {
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+ await this.#ensureContext(code);
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+ await this.#ensureContext(parent);
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+ return { context: null, message: 'Subsumption not supported for MIME types' };
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+ }
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+
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+ versionAlgorithm() {
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+ return null;
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+ }
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+
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+ }
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+
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+ class MimeTypeServicesFactory extends CodeSystemFactoryProvider {
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+ constructor(i18n) {
191
+ super(i18n);
192
+ this.uses = 0;
193
+ }
194
+
195
+ defaultVersion() {
196
+ return null;
197
+ }
198
+
199
+ system() {
200
+ return 'urn:ietf:bcp:13'; // BCP 13 defines MIME types
201
+ }
202
+
203
+ version() {
204
+ return null;
205
+ }
206
+
207
+ // eslint-disable-next-line no-unused-vars
208
+ async buildKnownValueSet(url, version) {
209
+ return null;
210
+ }
211
+
212
+ build(opContext, supplements) {
213
+ this.uses++;
214
+ return new MimeTypeServices(opContext, supplements);
215
+ }
216
+
217
+ useCount() {
218
+ return this.uses;
219
+ }
220
+
221
+ recordUse() {
222
+ this.uses++;
223
+ }
224
+ name() {
225
+ return 'Mime Types';
226
+ }
227
+
228
+
229
+ id() {
230
+ return "mimetypes";
231
+ }
232
+ }
233
+
234
+ module.exports = {
235
+ MimeTypeServices,
236
+ MimeTypeServicesFactory,
237
+ MimeTypeConcept
238
+ };