@synsci/cli-darwin-x64-baseline 1.1.77 → 1.1.78

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (830) hide show
  1. package/bin/skills/adaptyv/SKILL.md +114 -0
  2. package/bin/skills/adaptyv/reference/api_reference.md +308 -0
  3. package/bin/skills/adaptyv/reference/examples.md +913 -0
  4. package/bin/skills/adaptyv/reference/experiments.md +360 -0
  5. package/bin/skills/adaptyv/reference/protein_optimization.md +637 -0
  6. package/bin/skills/aeon/SKILL.md +374 -0
  7. package/bin/skills/aeon/references/anomaly_detection.md +154 -0
  8. package/bin/skills/aeon/references/classification.md +144 -0
  9. package/bin/skills/aeon/references/clustering.md +123 -0
  10. package/bin/skills/aeon/references/datasets_benchmarking.md +387 -0
  11. package/bin/skills/aeon/references/distances.md +256 -0
  12. package/bin/skills/aeon/references/forecasting.md +140 -0
  13. package/bin/skills/aeon/references/networks.md +289 -0
  14. package/bin/skills/aeon/references/regression.md +118 -0
  15. package/bin/skills/aeon/references/segmentation.md +163 -0
  16. package/bin/skills/aeon/references/similarity_search.md +187 -0
  17. package/bin/skills/aeon/references/transformations.md +246 -0
  18. package/bin/skills/alphafold-database/SKILL.md +513 -0
  19. package/bin/skills/alphafold-database/references/api_reference.md +423 -0
  20. package/bin/skills/anndata/SKILL.md +400 -0
  21. package/bin/skills/anndata/references/best_practices.md +525 -0
  22. package/bin/skills/anndata/references/concatenation.md +396 -0
  23. package/bin/skills/anndata/references/data_structure.md +314 -0
  24. package/bin/skills/anndata/references/io_operations.md +404 -0
  25. package/bin/skills/anndata/references/manipulation.md +516 -0
  26. package/bin/skills/arboreto/SKILL.md +243 -0
  27. package/bin/skills/arboreto/references/algorithms.md +138 -0
  28. package/bin/skills/arboreto/references/basic_inference.md +151 -0
  29. package/bin/skills/arboreto/references/distributed_computing.md +242 -0
  30. package/bin/skills/arboreto/scripts/basic_grn_inference.py +97 -0
  31. package/bin/skills/astropy/SKILL.md +331 -0
  32. package/bin/skills/astropy/references/coordinates.md +273 -0
  33. package/bin/skills/astropy/references/cosmology.md +307 -0
  34. package/bin/skills/astropy/references/fits.md +396 -0
  35. package/bin/skills/astropy/references/tables.md +489 -0
  36. package/bin/skills/astropy/references/time.md +404 -0
  37. package/bin/skills/astropy/references/units.md +178 -0
  38. package/bin/skills/astropy/references/wcs_and_other_modules.md +373 -0
  39. package/bin/skills/benchling-integration/SKILL.md +480 -0
  40. package/bin/skills/benchling-integration/references/api_endpoints.md +883 -0
  41. package/bin/skills/benchling-integration/references/authentication.md +379 -0
  42. package/bin/skills/benchling-integration/references/sdk_reference.md +774 -0
  43. package/bin/skills/biopython/SKILL.md +443 -0
  44. package/bin/skills/biopython/references/advanced.md +577 -0
  45. package/bin/skills/biopython/references/alignment.md +362 -0
  46. package/bin/skills/biopython/references/blast.md +455 -0
  47. package/bin/skills/biopython/references/databases.md +484 -0
  48. package/bin/skills/biopython/references/phylogenetics.md +566 -0
  49. package/bin/skills/biopython/references/sequence_io.md +285 -0
  50. package/bin/skills/biopython/references/structure.md +564 -0
  51. package/bin/skills/biorxiv-database/SKILL.md +483 -0
  52. package/bin/skills/biorxiv-database/references/api_reference.md +280 -0
  53. package/bin/skills/biorxiv-database/scripts/biorxiv_search.py +445 -0
  54. package/bin/skills/bioservices/SKILL.md +361 -0
  55. package/bin/skills/bioservices/references/identifier_mapping.md +685 -0
  56. package/bin/skills/bioservices/references/services_reference.md +636 -0
  57. package/bin/skills/bioservices/references/workflow_patterns.md +811 -0
  58. package/bin/skills/bioservices/scripts/batch_id_converter.py +347 -0
  59. package/bin/skills/bioservices/scripts/compound_cross_reference.py +378 -0
  60. package/bin/skills/bioservices/scripts/pathway_analysis.py +309 -0
  61. package/bin/skills/bioservices/scripts/protein_analysis_workflow.py +408 -0
  62. package/bin/skills/brenda-database/SKILL.md +719 -0
  63. package/bin/skills/brenda-database/references/api_reference.md +537 -0
  64. package/bin/skills/brenda-database/scripts/brenda_queries.py +844 -0
  65. package/bin/skills/brenda-database/scripts/brenda_visualization.py +772 -0
  66. package/bin/skills/brenda-database/scripts/enzyme_pathway_builder.py +1053 -0
  67. package/bin/skills/cellxgene-census/SKILL.md +511 -0
  68. package/bin/skills/cellxgene-census/references/census_schema.md +182 -0
  69. package/bin/skills/cellxgene-census/references/common_patterns.md +351 -0
  70. package/bin/skills/chembl-database/SKILL.md +389 -0
  71. package/bin/skills/chembl-database/references/api_reference.md +272 -0
  72. package/bin/skills/chembl-database/scripts/example_queries.py +278 -0
  73. package/bin/skills/cirq/SKILL.md +346 -0
  74. package/bin/skills/cirq/references/building.md +307 -0
  75. package/bin/skills/cirq/references/experiments.md +572 -0
  76. package/bin/skills/cirq/references/hardware.md +515 -0
  77. package/bin/skills/cirq/references/noise.md +515 -0
  78. package/bin/skills/cirq/references/simulation.md +350 -0
  79. package/bin/skills/cirq/references/transformation.md +416 -0
  80. package/bin/skills/clinicaltrials-database/SKILL.md +507 -0
  81. package/bin/skills/clinicaltrials-database/references/api_reference.md +358 -0
  82. package/bin/skills/clinicaltrials-database/scripts/query_clinicaltrials.py +215 -0
  83. package/bin/skills/clinpgx-database/SKILL.md +638 -0
  84. package/bin/skills/clinpgx-database/references/api_reference.md +757 -0
  85. package/bin/skills/clinpgx-database/scripts/query_clinpgx.py +518 -0
  86. package/bin/skills/clinvar-database/SKILL.md +362 -0
  87. package/bin/skills/clinvar-database/references/api_reference.md +227 -0
  88. package/bin/skills/clinvar-database/references/clinical_significance.md +218 -0
  89. package/bin/skills/clinvar-database/references/data_formats.md +358 -0
  90. package/bin/skills/cobrapy/SKILL.md +463 -0
  91. package/bin/skills/cobrapy/references/api_quick_reference.md +655 -0
  92. package/bin/skills/cobrapy/references/workflows.md +593 -0
  93. package/bin/skills/cosmic-database/SKILL.md +336 -0
  94. package/bin/skills/cosmic-database/references/cosmic_data_reference.md +220 -0
  95. package/bin/skills/cosmic-database/scripts/download_cosmic.py +231 -0
  96. package/bin/skills/dask/SKILL.md +456 -0
  97. package/bin/skills/dask/references/arrays.md +497 -0
  98. package/bin/skills/dask/references/bags.md +468 -0
  99. package/bin/skills/dask/references/best-practices.md +277 -0
  100. package/bin/skills/dask/references/dataframes.md +368 -0
  101. package/bin/skills/dask/references/futures.md +541 -0
  102. package/bin/skills/dask/references/schedulers.md +504 -0
  103. package/bin/skills/datacommons-client/SKILL.md +255 -0
  104. package/bin/skills/datacommons-client/references/getting_started.md +417 -0
  105. package/bin/skills/datacommons-client/references/node.md +250 -0
  106. package/bin/skills/datacommons-client/references/observation.md +185 -0
  107. package/bin/skills/datacommons-client/references/resolve.md +246 -0
  108. package/bin/skills/datamol/SKILL.md +706 -0
  109. package/bin/skills/datamol/references/conformers_module.md +131 -0
  110. package/bin/skills/datamol/references/core_api.md +130 -0
  111. package/bin/skills/datamol/references/descriptors_viz.md +195 -0
  112. package/bin/skills/datamol/references/fragments_scaffolds.md +174 -0
  113. package/bin/skills/datamol/references/io_module.md +109 -0
  114. package/bin/skills/datamol/references/reactions_data.md +218 -0
  115. package/bin/skills/deepchem/SKILL.md +597 -0
  116. package/bin/skills/deepchem/references/api_reference.md +303 -0
  117. package/bin/skills/deepchem/references/workflows.md +491 -0
  118. package/bin/skills/deepchem/scripts/graph_neural_network.py +338 -0
  119. package/bin/skills/deepchem/scripts/predict_solubility.py +224 -0
  120. package/bin/skills/deepchem/scripts/transfer_learning.py +375 -0
  121. package/bin/skills/deeptools/SKILL.md +531 -0
  122. package/bin/skills/deeptools/assets/quick_reference.md +58 -0
  123. package/bin/skills/deeptools/references/effective_genome_sizes.md +116 -0
  124. package/bin/skills/deeptools/references/normalization_methods.md +410 -0
  125. package/bin/skills/deeptools/references/tools_reference.md +533 -0
  126. package/bin/skills/deeptools/references/workflows.md +474 -0
  127. package/bin/skills/deeptools/scripts/validate_files.py +195 -0
  128. package/bin/skills/deeptools/scripts/workflow_generator.py +454 -0
  129. package/bin/skills/denario/SKILL.md +215 -0
  130. package/bin/skills/denario/references/examples.md +494 -0
  131. package/bin/skills/denario/references/installation.md +213 -0
  132. package/bin/skills/denario/references/llm_configuration.md +265 -0
  133. package/bin/skills/denario/references/research_pipeline.md +471 -0
  134. package/bin/skills/diffdock/SKILL.md +483 -0
  135. package/bin/skills/diffdock/assets/batch_template.csv +4 -0
  136. package/bin/skills/diffdock/assets/custom_inference_config.yaml +90 -0
  137. package/bin/skills/diffdock/references/confidence_and_limitations.md +182 -0
  138. package/bin/skills/diffdock/references/parameters_reference.md +163 -0
  139. package/bin/skills/diffdock/references/workflows_examples.md +392 -0
  140. package/bin/skills/diffdock/scripts/analyze_results.py +334 -0
  141. package/bin/skills/diffdock/scripts/prepare_batch_csv.py +254 -0
  142. package/bin/skills/diffdock/scripts/setup_check.py +278 -0
  143. package/bin/skills/dnanexus-integration/SKILL.md +383 -0
  144. package/bin/skills/dnanexus-integration/references/app-development.md +247 -0
  145. package/bin/skills/dnanexus-integration/references/configuration.md +646 -0
  146. package/bin/skills/dnanexus-integration/references/data-operations.md +400 -0
  147. package/bin/skills/dnanexus-integration/references/job-execution.md +412 -0
  148. package/bin/skills/dnanexus-integration/references/python-sdk.md +523 -0
  149. package/bin/skills/document-skills/docx/LICENSE.txt +30 -0
  150. package/bin/skills/document-skills/docx/SKILL.md +233 -0
  151. package/bin/skills/document-skills/docx/docx-js.md +350 -0
  152. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  153. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  154. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  155. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  156. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  157. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  158. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
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  160. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  161. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  162. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
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1
+ # SymPy Advanced Topics
2
+
3
+ This document covers SymPy's advanced mathematical capabilities including geometry, number theory, combinatorics, logic and sets, statistics, polynomials, and special functions.
4
+
5
+ ## Geometry
6
+
7
+ ### 2D Geometry
8
+
9
+ ```python
10
+ from sympy.geometry import Point, Line, Circle, Triangle, Polygon
11
+
12
+ # Points
13
+ p1 = Point(0, 0)
14
+ p2 = Point(1, 1)
15
+ p3 = Point(1, 0)
16
+
17
+ # Distance between points
18
+ dist = p1.distance(p2)
19
+
20
+ # Lines
21
+ line = Line(p1, p2)
22
+ line_from_eq = Line(Point(0, 0), slope=2)
23
+
24
+ # Line properties
25
+ line.slope # Slope
26
+ line.equation() # Equation of line
27
+ line.length # oo (infinite for lines)
28
+
29
+ # Line segment
30
+ from sympy.geometry import Segment
31
+ seg = Segment(p1, p2)
32
+ seg.length # Finite length
33
+ seg.midpoint # Midpoint
34
+
35
+ # Intersection
36
+ line2 = Line(Point(0, 1), Point(1, 0))
37
+ intersection = line.intersection(line2) # [Point(1/2, 1/2)]
38
+
39
+ # Circles
40
+ circle = Circle(Point(0, 0), 5) # Center, radius
41
+ circle.area # 25*pi
42
+ circle.circumference # 10*pi
43
+
44
+ # Triangles
45
+ tri = Triangle(p1, p2, p3)
46
+ tri.area # Area
47
+ tri.perimeter # Perimeter
48
+ tri.angles # Dictionary of angles
49
+ tri.vertices # Tuple of vertices
50
+
51
+ # Polygons
52
+ poly = Polygon(Point(0, 0), Point(1, 0), Point(1, 1), Point(0, 1))
53
+ poly.area
54
+ poly.perimeter
55
+ poly.vertices
56
+ ```
57
+
58
+ ### Geometric Queries
59
+
60
+ ```python
61
+ # Check if point is on line/curve
62
+ point = Point(0.5, 0.5)
63
+ line.contains(point)
64
+
65
+ # Check if parallel/perpendicular
66
+ line1 = Line(Point(0, 0), Point(1, 1))
67
+ line2 = Line(Point(0, 1), Point(1, 2))
68
+ line1.is_parallel(line2) # True
69
+ line1.is_perpendicular(line2) # False
70
+
71
+ # Tangent lines
72
+ from sympy.geometry import Circle, Point
73
+ circle = Circle(Point(0, 0), 5)
74
+ point = Point(5, 0)
75
+ tangents = circle.tangent_lines(point)
76
+ ```
77
+
78
+ ### 3D Geometry
79
+
80
+ ```python
81
+ from sympy.geometry import Point3D, Line3D, Plane
82
+
83
+ # 3D Points
84
+ p1 = Point3D(0, 0, 0)
85
+ p2 = Point3D(1, 1, 1)
86
+ p3 = Point3D(1, 0, 0)
87
+
88
+ # 3D Lines
89
+ line = Line3D(p1, p2)
90
+
91
+ # Planes
92
+ plane = Plane(p1, p2, p3) # From 3 points
93
+ plane = Plane(Point3D(0, 0, 0), normal_vector=(1, 0, 0)) # From point and normal
94
+
95
+ # Plane equation
96
+ plane.equation()
97
+
98
+ # Distance from point to plane
99
+ point = Point3D(2, 3, 4)
100
+ dist = plane.distance(point)
101
+
102
+ # Intersection of plane and line
103
+ intersection = plane.intersection(line)
104
+ ```
105
+
106
+ ### Curves and Ellipses
107
+
108
+ ```python
109
+ from sympy.geometry import Ellipse, Curve
110
+ from sympy import sin, cos, pi
111
+
112
+ # Ellipse
113
+ ellipse = Ellipse(Point(0, 0), hradius=3, vradius=2)
114
+ ellipse.area # 6*pi
115
+ ellipse.eccentricity # Eccentricity
116
+
117
+ # Parametric curves
118
+ from sympy.abc import t
119
+ curve = Curve((cos(t), sin(t)), (t, 0, 2*pi)) # Circle
120
+ ```
121
+
122
+ ## Number Theory
123
+
124
+ ### Prime Numbers
125
+
126
+ ```python
127
+ from sympy.ntheory import isprime, primerange, prime, nextprime, prevprime
128
+
129
+ # Check if prime
130
+ isprime(7) # True
131
+ isprime(10) # False
132
+
133
+ # Generate primes in range
134
+ list(primerange(10, 50)) # [11, 13, 17, 19, 23, 29, 31, 37, 41, 43, 47]
135
+
136
+ # nth prime
137
+ prime(10) # 29 (10th prime)
138
+
139
+ # Next and previous primes
140
+ nextprime(10) # 11
141
+ prevprime(10) # 7
142
+ ```
143
+
144
+ ### Prime Factorization
145
+
146
+ ```python
147
+ from sympy import factorint, primefactors, divisors
148
+
149
+ # Prime factorization
150
+ factorint(60) # {2: 2, 3: 1, 5: 1} means 2^2 * 3^1 * 5^1
151
+
152
+ # List of prime factors
153
+ primefactors(60) # [2, 3, 5]
154
+
155
+ # All divisors
156
+ divisors(60) # [1, 2, 3, 4, 5, 6, 10, 12, 15, 20, 30, 60]
157
+ ```
158
+
159
+ ### GCD and LCM
160
+
161
+ ```python
162
+ from sympy import gcd, lcm, igcd, ilcm
163
+
164
+ # Greatest common divisor
165
+ gcd(60, 48) # 12
166
+ igcd(60, 48) # 12 (integer version)
167
+
168
+ # Least common multiple
169
+ lcm(60, 48) # 240
170
+ ilcm(60, 48) # 240 (integer version)
171
+
172
+ # Multiple arguments
173
+ gcd(60, 48, 36) # 12
174
+ ```
175
+
176
+ ### Modular Arithmetic
177
+
178
+ ```python
179
+ from sympy.ntheory import mod_inverse, totient, is_primitive_root
180
+
181
+ # Modular inverse (find x such that a*x ≡ 1 (mod m))
182
+ mod_inverse(3, 7) # 5 (because 3*5 = 15 ≡ 1 (mod 7))
183
+
184
+ # Euler's totient function
185
+ totient(10) # 4 (numbers less than 10 coprime to 10: 1,3,7,9)
186
+
187
+ # Primitive roots
188
+ is_primitive_root(2, 5) # True
189
+ ```
190
+
191
+ ### Diophantine Equations
192
+
193
+ ```python
194
+ from sympy.solvers.diophantine import diophantine
195
+ from sympy.abc import x, y, z
196
+
197
+ # Linear Diophantine: ax + by = c
198
+ diophantine(3*x + 4*y - 5) # {(4*t_0 - 5, -3*t_0 + 5)}
199
+
200
+ # Quadratic forms
201
+ diophantine(x**2 + y**2 - 25) # Pythagorean-type equations
202
+
203
+ # More complex equations
204
+ diophantine(x**2 - 4*x*y + 8*y**2 - 3*x + 7*y - 5)
205
+ ```
206
+
207
+ ### Continued Fractions
208
+
209
+ ```python
210
+ from sympy import nsimplify, continued_fraction_iterator
211
+ from sympy import Rational, pi
212
+
213
+ # Convert to continued fraction
214
+ cf = continued_fraction_iterator(Rational(415, 93))
215
+ list(cf) # [4, 2, 6, 7]
216
+
217
+ # Approximate irrational numbers
218
+ cf_pi = continued_fraction_iterator(pi.evalf(20))
219
+ ```
220
+
221
+ ## Combinatorics
222
+
223
+ ### Permutations and Combinations
224
+
225
+ ```python
226
+ from sympy import factorial, binomial, factorial2
227
+ from sympy.functions.combinatorial.numbers import nC, nP
228
+
229
+ # Factorial
230
+ factorial(5) # 120
231
+
232
+ # Binomial coefficient (n choose k)
233
+ binomial(5, 2) # 10
234
+
235
+ # Permutations nPk = n!/(n-k)!
236
+ nP(5, 2) # 20
237
+
238
+ # Combinations nCk = n!/(k!(n-k)!)
239
+ nC(5, 2) # 10
240
+
241
+ # Double factorial n!!
242
+ factorial2(5) # 15 (5*3*1)
243
+ factorial2(6) # 48 (6*4*2)
244
+ ```
245
+
246
+ ### Permutation Objects
247
+
248
+ ```python
249
+ from sympy.combinatorics import Permutation
250
+
251
+ # Create permutation (cycle notation)
252
+ p = Permutation([1, 2, 0, 3]) # Sends 0->1, 1->2, 2->0, 3->3
253
+ p = Permutation(0, 1, 2)(3) # Cycle notation: (0 1 2)(3)
254
+
255
+ # Permutation operations
256
+ p.order() # Order of permutation
257
+ p.is_even # True if even permutation
258
+ p.inversions() # Number of inversions
259
+
260
+ # Compose permutations
261
+ q = Permutation([2, 0, 1, 3])
262
+ r = p * q # Composition
263
+ ```
264
+
265
+ ### Partitions
266
+
267
+ ```python
268
+ from sympy.utilities.iterables import partitions
269
+ from sympy.functions.combinatorial.numbers import partition
270
+
271
+ # Number of integer partitions
272
+ partition(5) # 7 (5, 4+1, 3+2, 3+1+1, 2+2+1, 2+1+1+1, 1+1+1+1+1)
273
+
274
+ # Generate all partitions
275
+ list(partitions(4))
276
+ # {4: 1}, {3: 1, 1: 1}, {2: 2}, {2: 1, 1: 2}, {1: 4}
277
+ ```
278
+
279
+ ### Catalan and Fibonacci Numbers
280
+
281
+ ```python
282
+ from sympy import catalan, fibonacci, lucas
283
+
284
+ # Catalan numbers
285
+ catalan(5) # 42
286
+
287
+ # Fibonacci numbers
288
+ fibonacci(10) # 55
289
+ lucas(10) # 123 (Lucas numbers)
290
+ ```
291
+
292
+ ### Group Theory
293
+
294
+ ```python
295
+ from sympy.combinatorics import PermutationGroup, Permutation
296
+
297
+ # Create permutation group
298
+ p1 = Permutation([1, 0, 2])
299
+ p2 = Permutation([0, 2, 1])
300
+ G = PermutationGroup(p1, p2)
301
+
302
+ # Group properties
303
+ G.order() # Order of group
304
+ G.is_abelian # Check if abelian
305
+ G.is_cyclic() # Check if cyclic
306
+ G.elements # All group elements
307
+ ```
308
+
309
+ ## Logic and Sets
310
+
311
+ ### Boolean Logic
312
+
313
+ ```python
314
+ from sympy import symbols, And, Or, Not, Xor, Implies, Equivalent
315
+ from sympy.logic.boolalg import truth_table, simplify_logic
316
+
317
+ # Define boolean variables
318
+ x, y, z = symbols('x y z', bool=True)
319
+
320
+ # Logical operations
321
+ expr = And(x, Or(y, Not(z)))
322
+ expr = Implies(x, y) # x -> y
323
+ expr = Equivalent(x, y) # x <-> y
324
+ expr = Xor(x, y) # Exclusive OR
325
+
326
+ # Simplification
327
+ expr = (x & y) | (x & ~y)
328
+ simplified = simplify_logic(expr) # Returns x
329
+
330
+ # Truth table
331
+ expr = Implies(x, y)
332
+ print(truth_table(expr, [x, y]))
333
+ ```
334
+
335
+ ### Sets
336
+
337
+ ```python
338
+ from sympy import FiniteSet, Interval, Union, Intersection, Complement
339
+ from sympy import S # For special sets
340
+
341
+ # Finite sets
342
+ A = FiniteSet(1, 2, 3, 4)
343
+ B = FiniteSet(3, 4, 5, 6)
344
+
345
+ # Set operations
346
+ union = Union(A, B) # {1, 2, 3, 4, 5, 6}
347
+ intersection = Intersection(A, B) # {3, 4}
348
+ difference = Complement(A, B) # {1, 2}
349
+
350
+ # Intervals
351
+ I = Interval(0, 1) # [0, 1]
352
+ I_open = Interval.open(0, 1) # (0, 1)
353
+ I_lopen = Interval.Lopen(0, 1) # (0, 1]
354
+ I_ropen = Interval.Ropen(0, 1) # [0, 1)
355
+
356
+ # Special sets
357
+ S.Reals # All real numbers
358
+ S.Integers # All integers
359
+ S.Naturals # Natural numbers
360
+ S.EmptySet # Empty set
361
+ S.Complexes # Complex numbers
362
+
363
+ # Set membership
364
+ 3 in A # True
365
+ 7 in A # False
366
+
367
+ # Subset and superset
368
+ A.is_subset(B) # False
369
+ A.is_superset(B) # False
370
+ ```
371
+
372
+ ### Set Theory Operations
373
+
374
+ ```python
375
+ from sympy import ImageSet, Lambda
376
+ from sympy.abc import x
377
+
378
+ # Image set (set of function values)
379
+ squares = ImageSet(Lambda(x, x**2), S.Integers)
380
+ # {x^2 | x ∈ ℤ}
381
+
382
+ # Power set
383
+ from sympy.sets import FiniteSet
384
+ A = FiniteSet(1, 2, 3)
385
+ # Note: SymPy doesn't have direct powerset, but can generate
386
+ ```
387
+
388
+ ## Polynomials
389
+
390
+ ### Polynomial Manipulation
391
+
392
+ ```python
393
+ from sympy import Poly, symbols, factor, expand, roots
394
+ x, y = symbols('x y')
395
+
396
+ # Create polynomial
397
+ p = Poly(x**2 + 2*x + 1, x)
398
+
399
+ # Polynomial properties
400
+ p.degree() # 2
401
+ p.coeffs() # [1, 2, 1]
402
+ p.as_expr() # Convert back to expression
403
+
404
+ # Arithmetic
405
+ p1 = Poly(x**2 + 1, x)
406
+ p2 = Poly(x + 1, x)
407
+ p3 = p1 + p2
408
+ p4 = p1 * p2
409
+ q, r = div(p1, p2) # Quotient and remainder
410
+ ```
411
+
412
+ ### Polynomial Roots
413
+
414
+ ```python
415
+ from sympy import roots, real_roots, count_roots
416
+
417
+ p = Poly(x**3 - 6*x**2 + 11*x - 6, x)
418
+
419
+ # All roots
420
+ r = roots(p) # {1: 1, 2: 1, 3: 1}
421
+
422
+ # Real roots only
423
+ r = real_roots(p)
424
+
425
+ # Count roots in interval
426
+ count_roots(p, a, b) # Number of roots in [a, b]
427
+ ```
428
+
429
+ ### Polynomial GCD and Factorization
430
+
431
+ ```python
432
+ from sympy import gcd, lcm, factor, factor_list
433
+
434
+ p1 = Poly(x**2 - 1, x)
435
+ p2 = Poly(x**2 - 2*x + 1, x)
436
+
437
+ # GCD and LCM
438
+ g = gcd(p1, p2)
439
+ l = lcm(p1, p2)
440
+
441
+ # Factorization
442
+ f = factor(x**3 - x**2 + x - 1) # (x - 1)*(x**2 + 1)
443
+ factors = factor_list(x**3 - x**2 + x - 1) # List form
444
+ ```
445
+
446
+ ### Groebner Bases
447
+
448
+ ```python
449
+ from sympy import groebner, symbols
450
+
451
+ x, y, z = symbols('x y z')
452
+ polynomials = [x**2 + y**2 + z**2 - 1, x*y - z]
453
+
454
+ # Compute Groebner basis
455
+ gb = groebner(polynomials, x, y, z)
456
+ ```
457
+
458
+ ## Statistics
459
+
460
+ ### Random Variables
461
+
462
+ ```python
463
+ from sympy.stats import (
464
+ Normal, Uniform, Exponential, Poisson, Binomial,
465
+ P, E, variance, density, sample
466
+ )
467
+
468
+ # Define random variables
469
+ X = Normal('X', 0, 1) # Normal(mean, std)
470
+ Y = Uniform('Y', 0, 1) # Uniform(a, b)
471
+ Z = Exponential('Z', 1) # Exponential(rate)
472
+
473
+ # Probability
474
+ P(X > 0) # 1/2
475
+ P((X > 0) & (X < 1))
476
+
477
+ # Expected value
478
+ E(X) # 0
479
+ E(X**2) # 1
480
+
481
+ # Variance
482
+ variance(X) # 1
483
+
484
+ # Density function
485
+ density(X)(x) # sqrt(2)*exp(-x**2/2)/(2*sqrt(pi))
486
+ ```
487
+
488
+ ### Discrete Distributions
489
+
490
+ ```python
491
+ from sympy.stats import Die, Bernoulli, Binomial, Poisson
492
+
493
+ # Die
494
+ D = Die('D', 6)
495
+ P(D > 3) # 1/2
496
+
497
+ # Bernoulli
498
+ B = Bernoulli('B', 0.5)
499
+ P(B) # 1/2
500
+
501
+ # Binomial
502
+ X = Binomial('X', 10, 0.5)
503
+ P(X == 5) # Probability of exactly 5 successes in 10 trials
504
+
505
+ # Poisson
506
+ Y = Poisson('Y', 3)
507
+ P(Y < 2) # Probability of less than 2 events
508
+ ```
509
+
510
+ ### Joint Distributions
511
+
512
+ ```python
513
+ from sympy.stats import Normal, P, E
514
+ from sympy import symbols
515
+
516
+ # Independent random variables
517
+ X = Normal('X', 0, 1)
518
+ Y = Normal('Y', 0, 1)
519
+
520
+ # Joint probability
521
+ P((X > 0) & (Y > 0)) # 1/4
522
+
523
+ # Covariance
524
+ from sympy.stats import covariance
525
+ covariance(X, Y) # 0 (independent)
526
+ ```
527
+
528
+ ## Special Functions
529
+
530
+ ### Common Special Functions
531
+
532
+ ```python
533
+ from sympy import (
534
+ gamma, # Gamma function
535
+ beta, # Beta function
536
+ erf, # Error function
537
+ besselj, # Bessel function of first kind
538
+ bessely, # Bessel function of second kind
539
+ hermite, # Hermite polynomial
540
+ legendre, # Legendre polynomial
541
+ laguerre, # Laguerre polynomial
542
+ chebyshevt, # Chebyshev polynomial (first kind)
543
+ zeta # Riemann zeta function
544
+ )
545
+
546
+ # Gamma function
547
+ gamma(5) # 24 (equivalent to 4!)
548
+ gamma(1/2) # sqrt(pi)
549
+
550
+ # Bessel functions
551
+ besselj(0, x) # J_0(x)
552
+ bessely(1, x) # Y_1(x)
553
+
554
+ # Orthogonal polynomials
555
+ hermite(3, x) # 8*x**3 - 12*x
556
+ legendre(2, x) # (3*x**2 - 1)/2
557
+ laguerre(2, x) # x**2/2 - 2*x + 1
558
+ chebyshevt(3, x) # 4*x**3 - 3*x
559
+ ```
560
+
561
+ ### Hypergeometric Functions
562
+
563
+ ```python
564
+ from sympy import hyper, meijerg
565
+
566
+ # Hypergeometric function
567
+ hyper([1, 2], [3], x)
568
+
569
+ # Meijer G-function
570
+ meijerg([[1, 1], []], [[1], [0]], x)
571
+ ```
572
+
573
+ ## Common Patterns
574
+
575
+ ### Pattern 1: Symbolic Geometry Problem
576
+
577
+ ```python
578
+ from sympy.geometry import Point, Triangle
579
+ from sympy import symbols
580
+
581
+ # Define symbolic triangle
582
+ a, b = symbols('a b', positive=True)
583
+ tri = Triangle(Point(0, 0), Point(a, 0), Point(0, b))
584
+
585
+ # Compute properties symbolically
586
+ area = tri.area # a*b/2
587
+ perimeter = tri.perimeter # a + b + sqrt(a**2 + b**2)
588
+ ```
589
+
590
+ ### Pattern 2: Number Theory Calculation
591
+
592
+ ```python
593
+ from sympy.ntheory import factorint, totient, isprime
594
+
595
+ # Factor and analyze
596
+ n = 12345
597
+ factors = factorint(n)
598
+ phi = totient(n)
599
+ is_prime = isprime(n)
600
+ ```
601
+
602
+ ### Pattern 3: Combinatorial Generation
603
+
604
+ ```python
605
+ from sympy.utilities.iterables import multiset_permutations, combinations
606
+
607
+ # Generate all permutations
608
+ perms = list(multiset_permutations([1, 2, 3]))
609
+
610
+ # Generate combinations
611
+ combs = list(combinations([1, 2, 3, 4], 2))
612
+ ```
613
+
614
+ ### Pattern 4: Probability Calculation
615
+
616
+ ```python
617
+ from sympy.stats import Normal, P, E, variance
618
+
619
+ X = Normal('X', mu, sigma)
620
+
621
+ # Compute statistics
622
+ mean = E(X)
623
+ var = variance(X)
624
+ prob = P(X > a)
625
+ ```
626
+
627
+ ## Important Notes
628
+
629
+ 1. **Assumptions:** Many operations benefit from symbol assumptions (e.g., `positive=True`, `integer=True`).
630
+
631
+ 2. **Symbolic vs Numeric:** These operations are symbolic. Use `evalf()` for numerical results.
632
+
633
+ 3. **Performance:** Complex symbolic operations can be slow. Consider numerical methods for large-scale computations.
634
+
635
+ 4. **Exact arithmetic:** SymPy maintains exact representations (e.g., `sqrt(2)` instead of `1.414...`).