@synsci/cli-darwin-x64-baseline 1.1.77 → 1.1.78

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (830) hide show
  1. package/bin/skills/adaptyv/SKILL.md +114 -0
  2. package/bin/skills/adaptyv/reference/api_reference.md +308 -0
  3. package/bin/skills/adaptyv/reference/examples.md +913 -0
  4. package/bin/skills/adaptyv/reference/experiments.md +360 -0
  5. package/bin/skills/adaptyv/reference/protein_optimization.md +637 -0
  6. package/bin/skills/aeon/SKILL.md +374 -0
  7. package/bin/skills/aeon/references/anomaly_detection.md +154 -0
  8. package/bin/skills/aeon/references/classification.md +144 -0
  9. package/bin/skills/aeon/references/clustering.md +123 -0
  10. package/bin/skills/aeon/references/datasets_benchmarking.md +387 -0
  11. package/bin/skills/aeon/references/distances.md +256 -0
  12. package/bin/skills/aeon/references/forecasting.md +140 -0
  13. package/bin/skills/aeon/references/networks.md +289 -0
  14. package/bin/skills/aeon/references/regression.md +118 -0
  15. package/bin/skills/aeon/references/segmentation.md +163 -0
  16. package/bin/skills/aeon/references/similarity_search.md +187 -0
  17. package/bin/skills/aeon/references/transformations.md +246 -0
  18. package/bin/skills/alphafold-database/SKILL.md +513 -0
  19. package/bin/skills/alphafold-database/references/api_reference.md +423 -0
  20. package/bin/skills/anndata/SKILL.md +400 -0
  21. package/bin/skills/anndata/references/best_practices.md +525 -0
  22. package/bin/skills/anndata/references/concatenation.md +396 -0
  23. package/bin/skills/anndata/references/data_structure.md +314 -0
  24. package/bin/skills/anndata/references/io_operations.md +404 -0
  25. package/bin/skills/anndata/references/manipulation.md +516 -0
  26. package/bin/skills/arboreto/SKILL.md +243 -0
  27. package/bin/skills/arboreto/references/algorithms.md +138 -0
  28. package/bin/skills/arboreto/references/basic_inference.md +151 -0
  29. package/bin/skills/arboreto/references/distributed_computing.md +242 -0
  30. package/bin/skills/arboreto/scripts/basic_grn_inference.py +97 -0
  31. package/bin/skills/astropy/SKILL.md +331 -0
  32. package/bin/skills/astropy/references/coordinates.md +273 -0
  33. package/bin/skills/astropy/references/cosmology.md +307 -0
  34. package/bin/skills/astropy/references/fits.md +396 -0
  35. package/bin/skills/astropy/references/tables.md +489 -0
  36. package/bin/skills/astropy/references/time.md +404 -0
  37. package/bin/skills/astropy/references/units.md +178 -0
  38. package/bin/skills/astropy/references/wcs_and_other_modules.md +373 -0
  39. package/bin/skills/benchling-integration/SKILL.md +480 -0
  40. package/bin/skills/benchling-integration/references/api_endpoints.md +883 -0
  41. package/bin/skills/benchling-integration/references/authentication.md +379 -0
  42. package/bin/skills/benchling-integration/references/sdk_reference.md +774 -0
  43. package/bin/skills/biopython/SKILL.md +443 -0
  44. package/bin/skills/biopython/references/advanced.md +577 -0
  45. package/bin/skills/biopython/references/alignment.md +362 -0
  46. package/bin/skills/biopython/references/blast.md +455 -0
  47. package/bin/skills/biopython/references/databases.md +484 -0
  48. package/bin/skills/biopython/references/phylogenetics.md +566 -0
  49. package/bin/skills/biopython/references/sequence_io.md +285 -0
  50. package/bin/skills/biopython/references/structure.md +564 -0
  51. package/bin/skills/biorxiv-database/SKILL.md +483 -0
  52. package/bin/skills/biorxiv-database/references/api_reference.md +280 -0
  53. package/bin/skills/biorxiv-database/scripts/biorxiv_search.py +445 -0
  54. package/bin/skills/bioservices/SKILL.md +361 -0
  55. package/bin/skills/bioservices/references/identifier_mapping.md +685 -0
  56. package/bin/skills/bioservices/references/services_reference.md +636 -0
  57. package/bin/skills/bioservices/references/workflow_patterns.md +811 -0
  58. package/bin/skills/bioservices/scripts/batch_id_converter.py +347 -0
  59. package/bin/skills/bioservices/scripts/compound_cross_reference.py +378 -0
  60. package/bin/skills/bioservices/scripts/pathway_analysis.py +309 -0
  61. package/bin/skills/bioservices/scripts/protein_analysis_workflow.py +408 -0
  62. package/bin/skills/brenda-database/SKILL.md +719 -0
  63. package/bin/skills/brenda-database/references/api_reference.md +537 -0
  64. package/bin/skills/brenda-database/scripts/brenda_queries.py +844 -0
  65. package/bin/skills/brenda-database/scripts/brenda_visualization.py +772 -0
  66. package/bin/skills/brenda-database/scripts/enzyme_pathway_builder.py +1053 -0
  67. package/bin/skills/cellxgene-census/SKILL.md +511 -0
  68. package/bin/skills/cellxgene-census/references/census_schema.md +182 -0
  69. package/bin/skills/cellxgene-census/references/common_patterns.md +351 -0
  70. package/bin/skills/chembl-database/SKILL.md +389 -0
  71. package/bin/skills/chembl-database/references/api_reference.md +272 -0
  72. package/bin/skills/chembl-database/scripts/example_queries.py +278 -0
  73. package/bin/skills/cirq/SKILL.md +346 -0
  74. package/bin/skills/cirq/references/building.md +307 -0
  75. package/bin/skills/cirq/references/experiments.md +572 -0
  76. package/bin/skills/cirq/references/hardware.md +515 -0
  77. package/bin/skills/cirq/references/noise.md +515 -0
  78. package/bin/skills/cirq/references/simulation.md +350 -0
  79. package/bin/skills/cirq/references/transformation.md +416 -0
  80. package/bin/skills/clinicaltrials-database/SKILL.md +507 -0
  81. package/bin/skills/clinicaltrials-database/references/api_reference.md +358 -0
  82. package/bin/skills/clinicaltrials-database/scripts/query_clinicaltrials.py +215 -0
  83. package/bin/skills/clinpgx-database/SKILL.md +638 -0
  84. package/bin/skills/clinpgx-database/references/api_reference.md +757 -0
  85. package/bin/skills/clinpgx-database/scripts/query_clinpgx.py +518 -0
  86. package/bin/skills/clinvar-database/SKILL.md +362 -0
  87. package/bin/skills/clinvar-database/references/api_reference.md +227 -0
  88. package/bin/skills/clinvar-database/references/clinical_significance.md +218 -0
  89. package/bin/skills/clinvar-database/references/data_formats.md +358 -0
  90. package/bin/skills/cobrapy/SKILL.md +463 -0
  91. package/bin/skills/cobrapy/references/api_quick_reference.md +655 -0
  92. package/bin/skills/cobrapy/references/workflows.md +593 -0
  93. package/bin/skills/cosmic-database/SKILL.md +336 -0
  94. package/bin/skills/cosmic-database/references/cosmic_data_reference.md +220 -0
  95. package/bin/skills/cosmic-database/scripts/download_cosmic.py +231 -0
  96. package/bin/skills/dask/SKILL.md +456 -0
  97. package/bin/skills/dask/references/arrays.md +497 -0
  98. package/bin/skills/dask/references/bags.md +468 -0
  99. package/bin/skills/dask/references/best-practices.md +277 -0
  100. package/bin/skills/dask/references/dataframes.md +368 -0
  101. package/bin/skills/dask/references/futures.md +541 -0
  102. package/bin/skills/dask/references/schedulers.md +504 -0
  103. package/bin/skills/datacommons-client/SKILL.md +255 -0
  104. package/bin/skills/datacommons-client/references/getting_started.md +417 -0
  105. package/bin/skills/datacommons-client/references/node.md +250 -0
  106. package/bin/skills/datacommons-client/references/observation.md +185 -0
  107. package/bin/skills/datacommons-client/references/resolve.md +246 -0
  108. package/bin/skills/datamol/SKILL.md +706 -0
  109. package/bin/skills/datamol/references/conformers_module.md +131 -0
  110. package/bin/skills/datamol/references/core_api.md +130 -0
  111. package/bin/skills/datamol/references/descriptors_viz.md +195 -0
  112. package/bin/skills/datamol/references/fragments_scaffolds.md +174 -0
  113. package/bin/skills/datamol/references/io_module.md +109 -0
  114. package/bin/skills/datamol/references/reactions_data.md +218 -0
  115. package/bin/skills/deepchem/SKILL.md +597 -0
  116. package/bin/skills/deepchem/references/api_reference.md +303 -0
  117. package/bin/skills/deepchem/references/workflows.md +491 -0
  118. package/bin/skills/deepchem/scripts/graph_neural_network.py +338 -0
  119. package/bin/skills/deepchem/scripts/predict_solubility.py +224 -0
  120. package/bin/skills/deepchem/scripts/transfer_learning.py +375 -0
  121. package/bin/skills/deeptools/SKILL.md +531 -0
  122. package/bin/skills/deeptools/assets/quick_reference.md +58 -0
  123. package/bin/skills/deeptools/references/effective_genome_sizes.md +116 -0
  124. package/bin/skills/deeptools/references/normalization_methods.md +410 -0
  125. package/bin/skills/deeptools/references/tools_reference.md +533 -0
  126. package/bin/skills/deeptools/references/workflows.md +474 -0
  127. package/bin/skills/deeptools/scripts/validate_files.py +195 -0
  128. package/bin/skills/deeptools/scripts/workflow_generator.py +454 -0
  129. package/bin/skills/denario/SKILL.md +215 -0
  130. package/bin/skills/denario/references/examples.md +494 -0
  131. package/bin/skills/denario/references/installation.md +213 -0
  132. package/bin/skills/denario/references/llm_configuration.md +265 -0
  133. package/bin/skills/denario/references/research_pipeline.md +471 -0
  134. package/bin/skills/diffdock/SKILL.md +483 -0
  135. package/bin/skills/diffdock/assets/batch_template.csv +4 -0
  136. package/bin/skills/diffdock/assets/custom_inference_config.yaml +90 -0
  137. package/bin/skills/diffdock/references/confidence_and_limitations.md +182 -0
  138. package/bin/skills/diffdock/references/parameters_reference.md +163 -0
  139. package/bin/skills/diffdock/references/workflows_examples.md +392 -0
  140. package/bin/skills/diffdock/scripts/analyze_results.py +334 -0
  141. package/bin/skills/diffdock/scripts/prepare_batch_csv.py +254 -0
  142. package/bin/skills/diffdock/scripts/setup_check.py +278 -0
  143. package/bin/skills/dnanexus-integration/SKILL.md +383 -0
  144. package/bin/skills/dnanexus-integration/references/app-development.md +247 -0
  145. package/bin/skills/dnanexus-integration/references/configuration.md +646 -0
  146. package/bin/skills/dnanexus-integration/references/data-operations.md +400 -0
  147. package/bin/skills/dnanexus-integration/references/job-execution.md +412 -0
  148. package/bin/skills/dnanexus-integration/references/python-sdk.md +523 -0
  149. package/bin/skills/document-skills/docx/LICENSE.txt +30 -0
  150. package/bin/skills/document-skills/docx/SKILL.md +233 -0
  151. package/bin/skills/document-skills/docx/docx-js.md +350 -0
  152. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  153. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  154. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  155. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  156. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  157. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  158. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
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  160. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  161. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  162. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
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+ # Vectorized Environments in Stable Baselines3
2
+
3
+ This document provides comprehensive information about vectorized environments in Stable Baselines3 for efficient parallel training.
4
+
5
+ ## Overview
6
+
7
+ Vectorized environments stack multiple independent environment instances into a single environment that processes actions and observations in batches. Instead of interacting with one environment at a time, you interact with `n` environments simultaneously.
8
+
9
+ **Benefits:**
10
+ - **Speed:** Parallel execution significantly accelerates training
11
+ - **Sample efficiency:** Collect more diverse experiences faster
12
+ - **Required for:** Frame stacking and normalization wrappers
13
+ - **Better for:** On-policy algorithms (PPO, A2C)
14
+
15
+ ## VecEnv Types
16
+
17
+ ### DummyVecEnv
18
+
19
+ Executes environments sequentially on the current Python process.
20
+
21
+ ```python
22
+ from stable_baselines3.common.vec_env import DummyVecEnv
23
+
24
+ # Method 1: Using make_vec_env
25
+ from stable_baselines3.common.env_util import make_vec_env
26
+
27
+ env = make_vec_env("CartPole-v1", n_envs=4, vec_env_cls=DummyVecEnv)
28
+
29
+ # Method 2: Manual creation
30
+ def make_env():
31
+ def _init():
32
+ return gym.make("CartPole-v1")
33
+ return _init
34
+
35
+ env = DummyVecEnv([make_env() for _ in range(4)])
36
+ ```
37
+
38
+ **When to use:**
39
+ - Lightweight environments (CartPole, simple grids)
40
+ - When multiprocessing overhead > computation time
41
+ - Debugging (easier to trace errors)
42
+ - Single-threaded environments
43
+
44
+ **Performance:** No actual parallelism (sequential execution).
45
+
46
+ ### SubprocVecEnv
47
+
48
+ Executes each environment in a separate process, enabling true parallelism.
49
+
50
+ ```python
51
+ from stable_baselines3.common.vec_env import SubprocVecEnv
52
+ from stable_baselines3.common.env_util import make_vec_env
53
+
54
+ env = make_vec_env("CartPole-v1", n_envs=8, vec_env_cls=SubprocVecEnv)
55
+ ```
56
+
57
+ **When to use:**
58
+ - Computationally expensive environments (physics simulations, 3D games)
59
+ - When environment computation time justifies multiprocessing overhead
60
+ - When you need true parallel execution
61
+
62
+ **Important:** Requires wrapping code in `if __name__ == "__main__":` when using forkserver or spawn:
63
+
64
+ ```python
65
+ if __name__ == "__main__":
66
+ env = make_vec_env("CartPole-v1", n_envs=8, vec_env_cls=SubprocVecEnv)
67
+ model = PPO("MlpPolicy", env)
68
+ model.learn(total_timesteps=100000)
69
+ ```
70
+
71
+ **Performance:** True parallelism across CPU cores.
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+
73
+ ## Quick Setup with make_vec_env
74
+
75
+ The easiest way to create vectorized environments:
76
+
77
+ ```python
78
+ from stable_baselines3.common.env_util import make_vec_env
79
+ from stable_baselines3.common.vec_env import SubprocVecEnv
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+
81
+ # Basic usage
82
+ env = make_vec_env("CartPole-v1", n_envs=4)
83
+
84
+ # With SubprocVecEnv
85
+ env = make_vec_env("CartPole-v1", n_envs=8, vec_env_cls=SubprocVecEnv)
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+
87
+ # With custom environment kwargs
88
+ env = make_vec_env(
89
+ "MyEnv-v0",
90
+ n_envs=4,
91
+ env_kwargs={"difficulty": "hard", "max_steps": 500}
92
+ )
93
+
94
+ # With custom seed
95
+ env = make_vec_env("CartPole-v1", n_envs=4, seed=42)
96
+ ```
97
+
98
+ ## API Differences from Standard Gym
99
+
100
+ Vectorized environments have a different API than standard Gym environments:
101
+
102
+ ### reset()
103
+
104
+ **Standard Gym:**
105
+ ```python
106
+ obs, info = env.reset()
107
+ ```
108
+
109
+ **VecEnv:**
110
+ ```python
111
+ obs = env.reset() # Returns only observations (numpy array)
112
+ # Access info via env.reset_infos (list of dicts)
113
+ infos = env.reset_infos
114
+ ```
115
+
116
+ ### step()
117
+
118
+ **Standard Gym:**
119
+ ```python
120
+ obs, reward, terminated, truncated, info = env.step(action)
121
+ ```
122
+
123
+ **VecEnv:**
124
+ ```python
125
+ obs, rewards, dones, infos = env.step(actions)
126
+ # Returns 4-tuple instead of 5-tuple
127
+ # dones = terminated | truncated
128
+ # actions is an array of shape (n_envs,) or (n_envs, action_dim)
129
+ ```
130
+
131
+ ### Auto-reset
132
+
133
+ **VecEnv automatically resets environments when episodes end:**
134
+
135
+ ```python
136
+ obs = env.reset() # Shape: (n_envs, obs_dim)
137
+ for _ in range(1000):
138
+ actions = env.action_space.sample() # Shape: (n_envs,)
139
+ obs, rewards, dones, infos = env.step(actions)
140
+ # If dones[i] is True, env i was automatically reset
141
+ # Final observation before reset available in infos[i]["terminal_observation"]
142
+ ```
143
+
144
+ ### Terminal Observations
145
+
146
+ When an episode ends, access the true final observation:
147
+
148
+ ```python
149
+ obs, rewards, dones, infos = env.step(actions)
150
+
151
+ for i, done in enumerate(dones):
152
+ if done:
153
+ # The obs[i] is already the reset observation
154
+ # True terminal observation is in info
155
+ terminal_obs = infos[i]["terminal_observation"]
156
+ print(f"Episode ended with terminal observation: {terminal_obs}")
157
+ ```
158
+
159
+ ## Training with Vectorized Environments
160
+
161
+ ### On-Policy Algorithms (PPO, A2C)
162
+
163
+ On-policy algorithms benefit greatly from vectorization:
164
+
165
+ ```python
166
+ from stable_baselines3 import PPO
167
+ from stable_baselines3.common.env_util import make_vec_env
168
+ from stable_baselines3.common.vec_env import SubprocVecEnv
169
+
170
+ # Create vectorized environment
171
+ env = make_vec_env("CartPole-v1", n_envs=8, vec_env_cls=SubprocVecEnv)
172
+
173
+ # Train
174
+ model = PPO("MlpPolicy", env, verbose=1, n_steps=128)
175
+ model.learn(total_timesteps=100000)
176
+
177
+ # With n_envs=8 and n_steps=128:
178
+ # - Collects 8*128=1024 steps per rollout
179
+ # - Updates after every 1024 steps
180
+ ```
181
+
182
+ **Rule of thumb:** Use 4-16 parallel environments for on-policy methods.
183
+
184
+ ### Off-Policy Algorithms (SAC, TD3, DQN)
185
+
186
+ Off-policy algorithms can use vectorization but benefit less:
187
+
188
+ ```python
189
+ from stable_baselines3 import SAC
190
+ from stable_baselines3.common.env_util import make_vec_env
191
+
192
+ # Use fewer environments (1-4)
193
+ env = make_vec_env("Pendulum-v1", n_envs=4)
194
+
195
+ # Set gradient_steps=-1 for efficiency
196
+ model = SAC(
197
+ "MlpPolicy",
198
+ env,
199
+ verbose=1,
200
+ train_freq=1,
201
+ gradient_steps=-1, # Do 1 gradient step per env step (4 total with 4 envs)
202
+ )
203
+ model.learn(total_timesteps=50000)
204
+ ```
205
+
206
+ **Rule of thumb:** Use 1-4 parallel environments for off-policy methods.
207
+
208
+ ## Wrappers for Vectorized Environments
209
+
210
+ ### VecNormalize
211
+
212
+ Normalizes observations and rewards using running statistics.
213
+
214
+ ```python
215
+ from stable_baselines3.common.vec_env import VecNormalize
216
+
217
+ env = make_vec_env("Pendulum-v1", n_envs=4)
218
+
219
+ # Wrap with normalization
220
+ env = VecNormalize(
221
+ env,
222
+ norm_obs=True, # Normalize observations
223
+ norm_reward=True, # Normalize rewards
224
+ clip_obs=10.0, # Clip normalized observations
225
+ clip_reward=10.0, # Clip normalized rewards
226
+ gamma=0.99, # Discount factor for reward normalization
227
+ )
228
+
229
+ # Train
230
+ model = PPO("MlpPolicy", env)
231
+ model.learn(total_timesteps=50000)
232
+
233
+ # Save model AND normalization statistics
234
+ model.save("ppo_pendulum")
235
+ env.save("vec_normalize.pkl")
236
+
237
+ # Load for evaluation
238
+ env = make_vec_env("Pendulum-v1", n_envs=1)
239
+ env = VecNormalize.load("vec_normalize.pkl", env)
240
+ env.training = False # Don't update stats during evaluation
241
+ env.norm_reward = False # Don't normalize rewards during evaluation
242
+
243
+ model = PPO.load("ppo_pendulum", env=env)
244
+ ```
245
+
246
+ **When to use:**
247
+ - Continuous control tasks (especially MuJoCo)
248
+ - When observation scales vary widely
249
+ - When rewards have high variance
250
+
251
+ **Important:**
252
+ - Statistics are NOT saved with model - save separately
253
+ - Disable training and reward normalization during evaluation
254
+
255
+ ### VecFrameStack
256
+
257
+ Stacks observations from multiple consecutive frames.
258
+
259
+ ```python
260
+ from stable_baselines3.common.vec_env import VecFrameStack
261
+
262
+ env = make_vec_env("PongNoFrameskip-v4", n_envs=8)
263
+
264
+ # Stack 4 frames
265
+ env = VecFrameStack(env, n_stack=4)
266
+
267
+ # Now observations have shape: (n_envs, n_stack, height, width)
268
+ model = PPO("CnnPolicy", env)
269
+ model.learn(total_timesteps=1000000)
270
+ ```
271
+
272
+ **When to use:**
273
+ - Atari games (stack 4 frames)
274
+ - Environments where velocity information is needed
275
+ - Partial observability problems
276
+
277
+ ### VecVideoRecorder
278
+
279
+ Records videos of agent behavior.
280
+
281
+ ```python
282
+ from stable_baselines3.common.vec_env import VecVideoRecorder
283
+
284
+ env = make_vec_env("CartPole-v1", n_envs=1)
285
+
286
+ # Record videos
287
+ env = VecVideoRecorder(
288
+ env,
289
+ video_folder="./videos/",
290
+ record_video_trigger=lambda x: x % 2000 == 0, # Record every 2000 steps
291
+ video_length=200, # Max video length
292
+ name_prefix="training"
293
+ )
294
+
295
+ model = PPO("MlpPolicy", env)
296
+ model.learn(total_timesteps=10000)
297
+ ```
298
+
299
+ **Output:** MP4 videos in `./videos/` directory.
300
+
301
+ ### VecCheckNan
302
+
303
+ Checks for NaN or infinite values in observations and rewards.
304
+
305
+ ```python
306
+ from stable_baselines3.common.vec_env import VecCheckNan
307
+
308
+ env = make_vec_env("CustomEnv-v0", n_envs=4)
309
+
310
+ # Add NaN checking (useful for debugging)
311
+ env = VecCheckNan(env, raise_exception=True, warn_once=True)
312
+
313
+ model = PPO("MlpPolicy", env)
314
+ model.learn(total_timesteps=10000)
315
+ ```
316
+
317
+ **When to use:**
318
+ - Debugging custom environments
319
+ - Catching numerical instabilities
320
+ - Validating environment implementation
321
+
322
+ ### VecTransposeImage
323
+
324
+ Transposes image observations from (height, width, channels) to (channels, height, width).
325
+
326
+ ```python
327
+ from stable_baselines3.common.vec_env import VecTransposeImage
328
+
329
+ env = make_vec_env("PongNoFrameskip-v4", n_envs=4)
330
+
331
+ # Convert HWC to CHW format
332
+ env = VecTransposeImage(env)
333
+
334
+ model = PPO("CnnPolicy", env)
335
+ ```
336
+
337
+ **When to use:**
338
+ - When environment returns images in HWC format
339
+ - SB3 expects CHW format for CNN policies
340
+
341
+ ## Advanced Usage
342
+
343
+ ### Custom VecEnv
344
+
345
+ Create custom vectorized environment:
346
+
347
+ ```python
348
+ from stable_baselines3.common.vec_env import DummyVecEnv
349
+ import gymnasium as gym
350
+
351
+ class CustomVecEnv(DummyVecEnv):
352
+ def step_wait(self):
353
+ # Custom logic before/after stepping
354
+ obs, rewards, dones, infos = super().step_wait()
355
+ # Modify observations/rewards/etc
356
+ return obs, rewards, dones, infos
357
+ ```
358
+
359
+ ### Environment Method Calls
360
+
361
+ Call methods on wrapped environments:
362
+
363
+ ```python
364
+ env = make_vec_env("MyEnv-v0", n_envs=4)
365
+
366
+ # Call method on all environments
367
+ env.env_method("set_difficulty", "hard")
368
+
369
+ # Call method on specific environment
370
+ env.env_method("reset_level", indices=[0, 2])
371
+
372
+ # Get attribute from all environments
373
+ levels = env.get_attr("current_level")
374
+ ```
375
+
376
+ ### Setting Attributes
377
+
378
+ ```python
379
+ # Set attribute on all environments
380
+ env.set_attr("difficulty", "hard")
381
+
382
+ # Set attribute on specific environments
383
+ env.set_attr("max_steps", 1000, indices=[1, 3])
384
+ ```
385
+
386
+ ## Performance Optimization
387
+
388
+ ### Choosing Number of Environments
389
+
390
+ **On-Policy (PPO, A2C):**
391
+ ```python
392
+ # General rule: 4-16 environments
393
+ # More environments = faster data collection
394
+ n_envs = 8
395
+ env = make_vec_env("CartPole-v1", n_envs=n_envs)
396
+
397
+ # Adjust n_steps to maintain same rollout length
398
+ # Total steps per rollout = n_envs * n_steps
399
+ model = PPO("MlpPolicy", env, n_steps=128) # 8*128 = 1024 steps/rollout
400
+ ```
401
+
402
+ **Off-Policy (SAC, TD3, DQN):**
403
+ ```python
404
+ # General rule: 1-4 environments
405
+ # More doesn't help as much (replay buffer provides diversity)
406
+ n_envs = 4
407
+ env = make_vec_env("Pendulum-v1", n_envs=n_envs)
408
+
409
+ model = SAC("MlpPolicy", env, gradient_steps=-1) # 1 grad step per env step
410
+ ```
411
+
412
+ ### CPU Core Utilization
413
+
414
+ ```python
415
+ import multiprocessing
416
+
417
+ # Use one less than total cores (leave one for Python main process)
418
+ n_cpus = multiprocessing.cpu_count() - 1
419
+ env = make_vec_env("MyEnv-v0", n_envs=n_cpus, vec_env_cls=SubprocVecEnv)
420
+ ```
421
+
422
+ ### Memory Considerations
423
+
424
+ ```python
425
+ # Large replay buffer + many environments = high memory usage
426
+ # Reduce buffer size if memory constrained
427
+ model = SAC(
428
+ "MlpPolicy",
429
+ env,
430
+ buffer_size=100_000, # Reduced from 1M
431
+ )
432
+ ```
433
+
434
+ ## Common Issues
435
+
436
+ ### Issue: "Can't pickle local object"
437
+
438
+ **Cause:** SubprocVecEnv requires picklable environments.
439
+
440
+ **Solution:** Define environment creation outside class/function:
441
+
442
+ ```python
443
+ # Bad
444
+ def train():
445
+ def make_env():
446
+ return gym.make("CartPole-v1")
447
+ env = SubprocVecEnv([make_env for _ in range(4)])
448
+
449
+ # Good
450
+ def make_env():
451
+ return gym.make("CartPole-v1")
452
+
453
+ if __name__ == "__main__":
454
+ env = SubprocVecEnv([make_env for _ in range(4)])
455
+ ```
456
+
457
+ ### Issue: Different behavior between single and vectorized env
458
+
459
+ **Cause:** Auto-reset in vectorized environments.
460
+
461
+ **Solution:** Handle terminal observations correctly:
462
+
463
+ ```python
464
+ obs, rewards, dones, infos = env.step(actions)
465
+ for i, done in enumerate(dones):
466
+ if done:
467
+ terminal_obs = infos[i]["terminal_observation"]
468
+ # Process terminal_obs if needed
469
+ ```
470
+
471
+ ### Issue: Slower with SubprocVecEnv than DummyVecEnv
472
+
473
+ **Cause:** Environment too lightweight (multiprocessing overhead > computation).
474
+
475
+ **Solution:** Use DummyVecEnv for simple environments:
476
+
477
+ ```python
478
+ # For CartPole, use DummyVecEnv
479
+ env = make_vec_env("CartPole-v1", n_envs=8, vec_env_cls=DummyVecEnv)
480
+ ```
481
+
482
+ ### Issue: Training crashes with SubprocVecEnv
483
+
484
+ **Cause:** Environment not properly isolated or has shared state.
485
+
486
+ **Solution:**
487
+ - Ensure environment has no shared global state
488
+ - Wrap code in `if __name__ == "__main__":`
489
+ - Use DummyVecEnv for debugging
490
+
491
+ ## Best Practices
492
+
493
+ 1. **Use appropriate VecEnv type:**
494
+ - DummyVecEnv: Simple environments (CartPole, basic grids)
495
+ - SubprocVecEnv: Complex environments (MuJoCo, Unity, 3D games)
496
+
497
+ 2. **Adjust hyperparameters for vectorization:**
498
+ - Divide `eval_freq`, `save_freq` by `n_envs` in callbacks
499
+ - Maintain same `n_steps * n_envs` for on-policy algorithms
500
+
501
+ 3. **Save normalization statistics:**
502
+ - Always save VecNormalize stats with model
503
+ - Disable training during evaluation
504
+
505
+ 4. **Monitor memory usage:**
506
+ - More environments = more memory
507
+ - Reduce buffer size if needed
508
+
509
+ 5. **Test with DummyVecEnv first:**
510
+ - Easier debugging
511
+ - Ensure environment works before parallelizing
512
+
513
+ ## Examples
514
+
515
+ ### Basic Training Loop
516
+
517
+ ```python
518
+ from stable_baselines3 import PPO
519
+ from stable_baselines3.common.env_util import make_vec_env
520
+ from stable_baselines3.common.vec_env import SubprocVecEnv
521
+
522
+ # Create vectorized environment
523
+ env = make_vec_env("CartPole-v1", n_envs=8, vec_env_cls=SubprocVecEnv)
524
+
525
+ # Train
526
+ model = PPO("MlpPolicy", env, verbose=1)
527
+ model.learn(total_timesteps=100000)
528
+
529
+ # Evaluate
530
+ obs = env.reset()
531
+ for _ in range(1000):
532
+ action, _states = model.predict(obs, deterministic=True)
533
+ obs, rewards, dones, infos = env.step(action)
534
+ ```
535
+
536
+ ### With Normalization
537
+
538
+ ```python
539
+ from stable_baselines3 import PPO
540
+ from stable_baselines3.common.env_util import make_vec_env
541
+ from stable_baselines3.common.vec_env import VecNormalize
542
+
543
+ # Create and normalize
544
+ env = make_vec_env("Pendulum-v1", n_envs=4)
545
+ env = VecNormalize(env, norm_obs=True, norm_reward=True)
546
+
547
+ # Train
548
+ model = PPO("MlpPolicy", env)
549
+ model.learn(total_timesteps=50000)
550
+
551
+ # Save both
552
+ model.save("model")
553
+ env.save("vec_normalize.pkl")
554
+
555
+ # Load for evaluation
556
+ eval_env = make_vec_env("Pendulum-v1", n_envs=1)
557
+ eval_env = VecNormalize.load("vec_normalize.pkl", eval_env)
558
+ eval_env.training = False
559
+ eval_env.norm_reward = False
560
+
561
+ model = PPO.load("model", env=eval_env)
562
+ ```
563
+
564
+ ## Additional Resources
565
+
566
+ - Official SB3 VecEnv Guide: https://stable-baselines3.readthedocs.io/en/master/guide/vec_envs.html
567
+ - VecEnv API Reference: https://stable-baselines3.readthedocs.io/en/master/common/vec_env.html
568
+ - Multiprocessing Best Practices: https://docs.python.org/3/library/multiprocessing.html