@synsci/cli-darwin-x64-baseline 1.1.77 → 1.1.78

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (830) hide show
  1. package/bin/skills/adaptyv/SKILL.md +114 -0
  2. package/bin/skills/adaptyv/reference/api_reference.md +308 -0
  3. package/bin/skills/adaptyv/reference/examples.md +913 -0
  4. package/bin/skills/adaptyv/reference/experiments.md +360 -0
  5. package/bin/skills/adaptyv/reference/protein_optimization.md +637 -0
  6. package/bin/skills/aeon/SKILL.md +374 -0
  7. package/bin/skills/aeon/references/anomaly_detection.md +154 -0
  8. package/bin/skills/aeon/references/classification.md +144 -0
  9. package/bin/skills/aeon/references/clustering.md +123 -0
  10. package/bin/skills/aeon/references/datasets_benchmarking.md +387 -0
  11. package/bin/skills/aeon/references/distances.md +256 -0
  12. package/bin/skills/aeon/references/forecasting.md +140 -0
  13. package/bin/skills/aeon/references/networks.md +289 -0
  14. package/bin/skills/aeon/references/regression.md +118 -0
  15. package/bin/skills/aeon/references/segmentation.md +163 -0
  16. package/bin/skills/aeon/references/similarity_search.md +187 -0
  17. package/bin/skills/aeon/references/transformations.md +246 -0
  18. package/bin/skills/alphafold-database/SKILL.md +513 -0
  19. package/bin/skills/alphafold-database/references/api_reference.md +423 -0
  20. package/bin/skills/anndata/SKILL.md +400 -0
  21. package/bin/skills/anndata/references/best_practices.md +525 -0
  22. package/bin/skills/anndata/references/concatenation.md +396 -0
  23. package/bin/skills/anndata/references/data_structure.md +314 -0
  24. package/bin/skills/anndata/references/io_operations.md +404 -0
  25. package/bin/skills/anndata/references/manipulation.md +516 -0
  26. package/bin/skills/arboreto/SKILL.md +243 -0
  27. package/bin/skills/arboreto/references/algorithms.md +138 -0
  28. package/bin/skills/arboreto/references/basic_inference.md +151 -0
  29. package/bin/skills/arboreto/references/distributed_computing.md +242 -0
  30. package/bin/skills/arboreto/scripts/basic_grn_inference.py +97 -0
  31. package/bin/skills/astropy/SKILL.md +331 -0
  32. package/bin/skills/astropy/references/coordinates.md +273 -0
  33. package/bin/skills/astropy/references/cosmology.md +307 -0
  34. package/bin/skills/astropy/references/fits.md +396 -0
  35. package/bin/skills/astropy/references/tables.md +489 -0
  36. package/bin/skills/astropy/references/time.md +404 -0
  37. package/bin/skills/astropy/references/units.md +178 -0
  38. package/bin/skills/astropy/references/wcs_and_other_modules.md +373 -0
  39. package/bin/skills/benchling-integration/SKILL.md +480 -0
  40. package/bin/skills/benchling-integration/references/api_endpoints.md +883 -0
  41. package/bin/skills/benchling-integration/references/authentication.md +379 -0
  42. package/bin/skills/benchling-integration/references/sdk_reference.md +774 -0
  43. package/bin/skills/biopython/SKILL.md +443 -0
  44. package/bin/skills/biopython/references/advanced.md +577 -0
  45. package/bin/skills/biopython/references/alignment.md +362 -0
  46. package/bin/skills/biopython/references/blast.md +455 -0
  47. package/bin/skills/biopython/references/databases.md +484 -0
  48. package/bin/skills/biopython/references/phylogenetics.md +566 -0
  49. package/bin/skills/biopython/references/sequence_io.md +285 -0
  50. package/bin/skills/biopython/references/structure.md +564 -0
  51. package/bin/skills/biorxiv-database/SKILL.md +483 -0
  52. package/bin/skills/biorxiv-database/references/api_reference.md +280 -0
  53. package/bin/skills/biorxiv-database/scripts/biorxiv_search.py +445 -0
  54. package/bin/skills/bioservices/SKILL.md +361 -0
  55. package/bin/skills/bioservices/references/identifier_mapping.md +685 -0
  56. package/bin/skills/bioservices/references/services_reference.md +636 -0
  57. package/bin/skills/bioservices/references/workflow_patterns.md +811 -0
  58. package/bin/skills/bioservices/scripts/batch_id_converter.py +347 -0
  59. package/bin/skills/bioservices/scripts/compound_cross_reference.py +378 -0
  60. package/bin/skills/bioservices/scripts/pathway_analysis.py +309 -0
  61. package/bin/skills/bioservices/scripts/protein_analysis_workflow.py +408 -0
  62. package/bin/skills/brenda-database/SKILL.md +719 -0
  63. package/bin/skills/brenda-database/references/api_reference.md +537 -0
  64. package/bin/skills/brenda-database/scripts/brenda_queries.py +844 -0
  65. package/bin/skills/brenda-database/scripts/brenda_visualization.py +772 -0
  66. package/bin/skills/brenda-database/scripts/enzyme_pathway_builder.py +1053 -0
  67. package/bin/skills/cellxgene-census/SKILL.md +511 -0
  68. package/bin/skills/cellxgene-census/references/census_schema.md +182 -0
  69. package/bin/skills/cellxgene-census/references/common_patterns.md +351 -0
  70. package/bin/skills/chembl-database/SKILL.md +389 -0
  71. package/bin/skills/chembl-database/references/api_reference.md +272 -0
  72. package/bin/skills/chembl-database/scripts/example_queries.py +278 -0
  73. package/bin/skills/cirq/SKILL.md +346 -0
  74. package/bin/skills/cirq/references/building.md +307 -0
  75. package/bin/skills/cirq/references/experiments.md +572 -0
  76. package/bin/skills/cirq/references/hardware.md +515 -0
  77. package/bin/skills/cirq/references/noise.md +515 -0
  78. package/bin/skills/cirq/references/simulation.md +350 -0
  79. package/bin/skills/cirq/references/transformation.md +416 -0
  80. package/bin/skills/clinicaltrials-database/SKILL.md +507 -0
  81. package/bin/skills/clinicaltrials-database/references/api_reference.md +358 -0
  82. package/bin/skills/clinicaltrials-database/scripts/query_clinicaltrials.py +215 -0
  83. package/bin/skills/clinpgx-database/SKILL.md +638 -0
  84. package/bin/skills/clinpgx-database/references/api_reference.md +757 -0
  85. package/bin/skills/clinpgx-database/scripts/query_clinpgx.py +518 -0
  86. package/bin/skills/clinvar-database/SKILL.md +362 -0
  87. package/bin/skills/clinvar-database/references/api_reference.md +227 -0
  88. package/bin/skills/clinvar-database/references/clinical_significance.md +218 -0
  89. package/bin/skills/clinvar-database/references/data_formats.md +358 -0
  90. package/bin/skills/cobrapy/SKILL.md +463 -0
  91. package/bin/skills/cobrapy/references/api_quick_reference.md +655 -0
  92. package/bin/skills/cobrapy/references/workflows.md +593 -0
  93. package/bin/skills/cosmic-database/SKILL.md +336 -0
  94. package/bin/skills/cosmic-database/references/cosmic_data_reference.md +220 -0
  95. package/bin/skills/cosmic-database/scripts/download_cosmic.py +231 -0
  96. package/bin/skills/dask/SKILL.md +456 -0
  97. package/bin/skills/dask/references/arrays.md +497 -0
  98. package/bin/skills/dask/references/bags.md +468 -0
  99. package/bin/skills/dask/references/best-practices.md +277 -0
  100. package/bin/skills/dask/references/dataframes.md +368 -0
  101. package/bin/skills/dask/references/futures.md +541 -0
  102. package/bin/skills/dask/references/schedulers.md +504 -0
  103. package/bin/skills/datacommons-client/SKILL.md +255 -0
  104. package/bin/skills/datacommons-client/references/getting_started.md +417 -0
  105. package/bin/skills/datacommons-client/references/node.md +250 -0
  106. package/bin/skills/datacommons-client/references/observation.md +185 -0
  107. package/bin/skills/datacommons-client/references/resolve.md +246 -0
  108. package/bin/skills/datamol/SKILL.md +706 -0
  109. package/bin/skills/datamol/references/conformers_module.md +131 -0
  110. package/bin/skills/datamol/references/core_api.md +130 -0
  111. package/bin/skills/datamol/references/descriptors_viz.md +195 -0
  112. package/bin/skills/datamol/references/fragments_scaffolds.md +174 -0
  113. package/bin/skills/datamol/references/io_module.md +109 -0
  114. package/bin/skills/datamol/references/reactions_data.md +218 -0
  115. package/bin/skills/deepchem/SKILL.md +597 -0
  116. package/bin/skills/deepchem/references/api_reference.md +303 -0
  117. package/bin/skills/deepchem/references/workflows.md +491 -0
  118. package/bin/skills/deepchem/scripts/graph_neural_network.py +338 -0
  119. package/bin/skills/deepchem/scripts/predict_solubility.py +224 -0
  120. package/bin/skills/deepchem/scripts/transfer_learning.py +375 -0
  121. package/bin/skills/deeptools/SKILL.md +531 -0
  122. package/bin/skills/deeptools/assets/quick_reference.md +58 -0
  123. package/bin/skills/deeptools/references/effective_genome_sizes.md +116 -0
  124. package/bin/skills/deeptools/references/normalization_methods.md +410 -0
  125. package/bin/skills/deeptools/references/tools_reference.md +533 -0
  126. package/bin/skills/deeptools/references/workflows.md +474 -0
  127. package/bin/skills/deeptools/scripts/validate_files.py +195 -0
  128. package/bin/skills/deeptools/scripts/workflow_generator.py +454 -0
  129. package/bin/skills/denario/SKILL.md +215 -0
  130. package/bin/skills/denario/references/examples.md +494 -0
  131. package/bin/skills/denario/references/installation.md +213 -0
  132. package/bin/skills/denario/references/llm_configuration.md +265 -0
  133. package/bin/skills/denario/references/research_pipeline.md +471 -0
  134. package/bin/skills/diffdock/SKILL.md +483 -0
  135. package/bin/skills/diffdock/assets/batch_template.csv +4 -0
  136. package/bin/skills/diffdock/assets/custom_inference_config.yaml +90 -0
  137. package/bin/skills/diffdock/references/confidence_and_limitations.md +182 -0
  138. package/bin/skills/diffdock/references/parameters_reference.md +163 -0
  139. package/bin/skills/diffdock/references/workflows_examples.md +392 -0
  140. package/bin/skills/diffdock/scripts/analyze_results.py +334 -0
  141. package/bin/skills/diffdock/scripts/prepare_batch_csv.py +254 -0
  142. package/bin/skills/diffdock/scripts/setup_check.py +278 -0
  143. package/bin/skills/dnanexus-integration/SKILL.md +383 -0
  144. package/bin/skills/dnanexus-integration/references/app-development.md +247 -0
  145. package/bin/skills/dnanexus-integration/references/configuration.md +646 -0
  146. package/bin/skills/dnanexus-integration/references/data-operations.md +400 -0
  147. package/bin/skills/dnanexus-integration/references/job-execution.md +412 -0
  148. package/bin/skills/dnanexus-integration/references/python-sdk.md +523 -0
  149. package/bin/skills/document-skills/docx/LICENSE.txt +30 -0
  150. package/bin/skills/document-skills/docx/SKILL.md +233 -0
  151. package/bin/skills/document-skills/docx/docx-js.md +350 -0
  152. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chart.xsd +1499 -0
  153. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-chartDrawing.xsd +146 -0
  154. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-diagram.xsd +1085 -0
  155. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-lockedCanvas.xsd +11 -0
  156. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-main.xsd +3081 -0
  157. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-picture.xsd +23 -0
  158. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/dml-spreadsheetDrawing.xsd +185 -0
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  160. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/pml.xsd +1676 -0
  161. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-additionalCharacteristics.xsd +28 -0
  162. package/bin/skills/document-skills/docx/ooxml/schemas/ISO-IEC29500-4_2016/shared-bibliography.xsd +144 -0
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  805. package/bin/skills/uniprot-database/references/api_examples.md +413 -0
  806. package/bin/skills/uniprot-database/references/api_fields.md +275 -0
  807. package/bin/skills/uniprot-database/references/id_mapping_databases.md +285 -0
  808. package/bin/skills/uniprot-database/references/query_syntax.md +256 -0
  809. package/bin/skills/uniprot-database/scripts/uniprot_client.py +341 -0
  810. package/bin/skills/uspto-database/SKILL.md +607 -0
  811. package/bin/skills/uspto-database/references/additional_apis.md +394 -0
  812. package/bin/skills/uspto-database/references/patentsearch_api.md +266 -0
  813. package/bin/skills/uspto-database/references/peds_api.md +212 -0
  814. package/bin/skills/uspto-database/references/trademark_api.md +358 -0
  815. package/bin/skills/uspto-database/scripts/patent_search.py +290 -0
  816. package/bin/skills/uspto-database/scripts/peds_client.py +285 -0
  817. package/bin/skills/uspto-database/scripts/trademark_client.py +311 -0
  818. package/bin/skills/vaex/SKILL.md +182 -0
  819. package/bin/skills/vaex/references/core_dataframes.md +367 -0
  820. package/bin/skills/vaex/references/data_processing.md +555 -0
  821. package/bin/skills/vaex/references/io_operations.md +703 -0
  822. package/bin/skills/vaex/references/machine_learning.md +728 -0
  823. package/bin/skills/vaex/references/performance.md +571 -0
  824. package/bin/skills/vaex/references/visualization.md +613 -0
  825. package/bin/skills/zarr-python/SKILL.md +779 -0
  826. package/bin/skills/zarr-python/references/api_reference.md +515 -0
  827. package/bin/skills/zinc-database/SKILL.md +404 -0
  828. package/bin/skills/zinc-database/references/api_reference.md +692 -0
  829. package/bin/synsc +0 -0
  830. package/package.json +1 -1
@@ -0,0 +1,409 @@
1
+ #!/usr/bin/env python3
2
+ """
3
+ Matplotlib Style Configurator
4
+
5
+ Interactive utility to configure matplotlib style preferences and generate
6
+ custom style sheets. Creates a preview of the style and optionally saves
7
+ it as a .mplstyle file.
8
+
9
+ Usage:
10
+ python style_configurator.py [--preset PRESET] [--output FILE] [--preview]
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+
12
+ Presets:
13
+ publication, presentation, web, dark, minimal
14
+ """
15
+
16
+ import numpy as np
17
+ import matplotlib.pyplot as plt
18
+ from matplotlib.gridspec import GridSpec
19
+ import argparse
20
+ import os
21
+
22
+
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+ # Predefined style presets
24
+ STYLE_PRESETS = {
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+ 'publication': {
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+ 'figure.figsize': (8, 6),
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+ 'figure.dpi': 100,
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+ 'savefig.dpi': 300,
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+ 'savefig.bbox': 'tight',
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+ 'font.family': 'sans-serif',
31
+ 'font.sans-serif': ['Arial', 'Helvetica'],
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+ 'font.size': 11,
33
+ 'axes.labelsize': 12,
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+ 'axes.titlesize': 14,
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+ 'axes.linewidth': 1.5,
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+ 'axes.grid': False,
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+ 'axes.spines.top': False,
38
+ 'axes.spines.right': False,
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+ 'lines.linewidth': 2,
40
+ 'lines.markersize': 8,
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+ 'xtick.labelsize': 10,
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+ 'ytick.labelsize': 10,
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+ 'xtick.direction': 'in',
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+ 'ytick.direction': 'in',
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+ 'xtick.major.size': 6,
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+ 'ytick.major.size': 6,
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+ 'xtick.major.width': 1.5,
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+ 'ytick.major.width': 1.5,
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+ 'legend.fontsize': 10,
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+ 'legend.frameon': True,
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+ 'legend.framealpha': 1.0,
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+ 'legend.edgecolor': 'black',
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+ },
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+ 'presentation': {
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+ 'figure.figsize': (12, 8),
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+ 'figure.dpi': 100,
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+ 'savefig.dpi': 150,
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+ 'font.size': 16,
59
+ 'axes.labelsize': 20,
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+ 'axes.titlesize': 24,
61
+ 'axes.linewidth': 2,
62
+ 'lines.linewidth': 3,
63
+ 'lines.markersize': 12,
64
+ 'xtick.labelsize': 16,
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+ 'ytick.labelsize': 16,
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+ 'legend.fontsize': 16,
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+ 'axes.grid': True,
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+ 'grid.alpha': 0.3,
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+ },
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+ 'web': {
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+ 'figure.figsize': (10, 6),
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+ 'figure.dpi': 96,
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+ 'savefig.dpi': 150,
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+ 'font.size': 11,
75
+ 'axes.labelsize': 12,
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+ 'axes.titlesize': 14,
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+ 'lines.linewidth': 2,
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+ 'axes.grid': True,
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+ 'grid.alpha': 0.2,
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+ 'grid.linestyle': '--',
81
+ },
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+ 'dark': {
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+ 'figure.facecolor': '#1e1e1e',
84
+ 'figure.edgecolor': '#1e1e1e',
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+ 'axes.facecolor': '#1e1e1e',
86
+ 'axes.edgecolor': 'white',
87
+ 'axes.labelcolor': 'white',
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+ 'text.color': 'white',
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+ 'xtick.color': 'white',
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+ 'ytick.color': 'white',
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+ 'grid.color': 'gray',
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+ 'grid.alpha': 0.3,
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+ 'axes.grid': True,
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+ 'legend.facecolor': '#1e1e1e',
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+ 'legend.edgecolor': 'white',
96
+ 'savefig.facecolor': '#1e1e1e',
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+ },
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+ 'minimal': {
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+ 'figure.figsize': (10, 6),
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+ 'axes.spines.top': False,
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+ 'axes.spines.right': False,
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+ 'axes.spines.left': False,
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+ 'axes.spines.bottom': False,
104
+ 'axes.grid': False,
105
+ 'xtick.bottom': True,
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+ 'ytick.left': True,
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+ 'axes.axisbelow': True,
108
+ 'lines.linewidth': 2.5,
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+ 'font.size': 12,
110
+ }
111
+ }
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+
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+
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+ def generate_preview_data():
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+ """Generate sample data for style preview."""
116
+ np.random.seed(42)
117
+ x = np.linspace(0, 10, 100)
118
+ y1 = np.sin(x) + 0.1 * np.random.randn(100)
119
+ y2 = np.cos(x) + 0.1 * np.random.randn(100)
120
+ scatter_x = np.random.randn(100)
121
+ scatter_y = 2 * scatter_x + np.random.randn(100)
122
+ categories = ['A', 'B', 'C', 'D', 'E']
123
+ bar_values = [25, 40, 30, 55, 45]
124
+
125
+ return {
126
+ 'x': x, 'y1': y1, 'y2': y2,
127
+ 'scatter_x': scatter_x, 'scatter_y': scatter_y,
128
+ 'categories': categories, 'bar_values': bar_values
129
+ }
130
+
131
+
132
+ def create_style_preview(style_dict=None):
133
+ """Create a preview figure demonstrating the style."""
134
+ if style_dict:
135
+ plt.rcParams.update(style_dict)
136
+
137
+ data = generate_preview_data()
138
+
139
+ fig = plt.figure(figsize=(14, 10))
140
+ gs = GridSpec(2, 2, figure=fig, hspace=0.3, wspace=0.3)
141
+
142
+ # Line plot
143
+ ax1 = fig.add_subplot(gs[0, 0])
144
+ ax1.plot(data['x'], data['y1'], label='sin(x)', marker='o', markevery=10)
145
+ ax1.plot(data['x'], data['y2'], label='cos(x)', linestyle='--')
146
+ ax1.set_xlabel('X axis')
147
+ ax1.set_ylabel('Y axis')
148
+ ax1.set_title('Line Plot')
149
+ ax1.legend()
150
+ ax1.grid(True, alpha=0.3)
151
+
152
+ # Scatter plot
153
+ ax2 = fig.add_subplot(gs[0, 1])
154
+ colors = np.sqrt(data['scatter_x']**2 + data['scatter_y']**2)
155
+ scatter = ax2.scatter(data['scatter_x'], data['scatter_y'],
156
+ c=colors, cmap='viridis', alpha=0.6, s=50)
157
+ ax2.set_xlabel('X axis')
158
+ ax2.set_ylabel('Y axis')
159
+ ax2.set_title('Scatter Plot')
160
+ cbar = plt.colorbar(scatter, ax=ax2)
161
+ cbar.set_label('Distance')
162
+ ax2.grid(True, alpha=0.3)
163
+
164
+ # Bar chart
165
+ ax3 = fig.add_subplot(gs[1, 0])
166
+ bars = ax3.bar(data['categories'], data['bar_values'],
167
+ edgecolor='black', linewidth=1)
168
+ # Color bars with gradient
169
+ colors = plt.cm.viridis(np.linspace(0.2, 0.8, len(bars)))
170
+ for bar, color in zip(bars, colors):
171
+ bar.set_facecolor(color)
172
+ ax3.set_xlabel('Categories')
173
+ ax3.set_ylabel('Values')
174
+ ax3.set_title('Bar Chart')
175
+ ax3.grid(True, axis='y', alpha=0.3)
176
+
177
+ # Multiple line plot with fills
178
+ ax4 = fig.add_subplot(gs[1, 1])
179
+ ax4.plot(data['x'], data['y1'], label='Signal 1', linewidth=2)
180
+ ax4.fill_between(data['x'], data['y1'] - 0.2, data['y1'] + 0.2,
181
+ alpha=0.3, label='±1 std')
182
+ ax4.plot(data['x'], data['y2'], label='Signal 2', linewidth=2)
183
+ ax4.fill_between(data['x'], data['y2'] - 0.2, data['y2'] + 0.2,
184
+ alpha=0.3)
185
+ ax4.set_xlabel('X axis')
186
+ ax4.set_ylabel('Y axis')
187
+ ax4.set_title('Time Series with Uncertainty')
188
+ ax4.legend()
189
+ ax4.grid(True, alpha=0.3)
190
+
191
+ fig.suptitle('Style Preview', fontsize=16, fontweight='bold')
192
+
193
+ return fig
194
+
195
+
196
+ def save_style_file(style_dict, filename):
197
+ """Save style dictionary as .mplstyle file."""
198
+ with open(filename, 'w') as f:
199
+ f.write("# Custom matplotlib style\n")
200
+ f.write("# Generated by style_configurator.py\n\n")
201
+
202
+ # Group settings by category
203
+ categories = {
204
+ 'Figure': ['figure.'],
205
+ 'Font': ['font.'],
206
+ 'Axes': ['axes.'],
207
+ 'Lines': ['lines.'],
208
+ 'Markers': ['markers.'],
209
+ 'Ticks': ['tick.', 'xtick.', 'ytick.'],
210
+ 'Grid': ['grid.'],
211
+ 'Legend': ['legend.'],
212
+ 'Savefig': ['savefig.'],
213
+ 'Text': ['text.'],
214
+ }
215
+
216
+ for category, prefixes in categories.items():
217
+ category_items = {k: v for k, v in style_dict.items()
218
+ if any(k.startswith(p) for p in prefixes)}
219
+ if category_items:
220
+ f.write(f"# {category}\n")
221
+ for key, value in sorted(category_items.items()):
222
+ # Format value appropriately
223
+ if isinstance(value, (list, tuple)):
224
+ value_str = ', '.join(str(v) for v in value)
225
+ elif isinstance(value, bool):
226
+ value_str = str(value)
227
+ else:
228
+ value_str = str(value)
229
+ f.write(f"{key}: {value_str}\n")
230
+ f.write("\n")
231
+
232
+ print(f"Style saved to {filename}")
233
+
234
+
235
+ def print_style_info(style_dict):
236
+ """Print information about the style."""
237
+ print("\n" + "="*60)
238
+ print("STYLE CONFIGURATION")
239
+ print("="*60)
240
+
241
+ categories = {
242
+ 'Figure Settings': ['figure.'],
243
+ 'Font Settings': ['font.'],
244
+ 'Axes Settings': ['axes.'],
245
+ 'Line Settings': ['lines.'],
246
+ 'Grid Settings': ['grid.'],
247
+ 'Legend Settings': ['legend.'],
248
+ }
249
+
250
+ for category, prefixes in categories.items():
251
+ category_items = {k: v for k, v in style_dict.items()
252
+ if any(k.startswith(p) for p in prefixes)}
253
+ if category_items:
254
+ print(f"\n{category}:")
255
+ for key, value in sorted(category_items.items()):
256
+ print(f" {key}: {value}")
257
+
258
+ print("\n" + "="*60 + "\n")
259
+
260
+
261
+ def list_available_presets():
262
+ """Print available style presets."""
263
+ print("\nAvailable style presets:")
264
+ print("-" * 40)
265
+ descriptions = {
266
+ 'publication': 'Optimized for academic publications',
267
+ 'presentation': 'Large fonts for presentations',
268
+ 'web': 'Optimized for web display',
269
+ 'dark': 'Dark background theme',
270
+ 'minimal': 'Minimal, clean style',
271
+ }
272
+ for preset, desc in descriptions.items():
273
+ print(f" {preset:15s} - {desc}")
274
+ print("-" * 40 + "\n")
275
+
276
+
277
+ def interactive_mode():
278
+ """Run interactive mode to customize style settings."""
279
+ print("\n" + "="*60)
280
+ print("MATPLOTLIB STYLE CONFIGURATOR - Interactive Mode")
281
+ print("="*60)
282
+
283
+ list_available_presets()
284
+
285
+ preset = input("Choose a preset to start from (or 'custom' for default): ").strip().lower()
286
+
287
+ if preset in STYLE_PRESETS:
288
+ style_dict = STYLE_PRESETS[preset].copy()
289
+ print(f"\nStarting from '{preset}' preset")
290
+ else:
291
+ style_dict = {}
292
+ print("\nStarting from default matplotlib style")
293
+
294
+ print("\nCommon settings you might want to customize:")
295
+ print(" 1. Figure size")
296
+ print(" 2. Font sizes")
297
+ print(" 3. Line widths")
298
+ print(" 4. Grid settings")
299
+ print(" 5. Color scheme")
300
+ print(" 6. Done, show preview")
301
+
302
+ while True:
303
+ choice = input("\nSelect option (1-6): ").strip()
304
+
305
+ if choice == '1':
306
+ width = input(" Figure width (inches, default 10): ").strip() or '10'
307
+ height = input(" Figure height (inches, default 6): ").strip() or '6'
308
+ style_dict['figure.figsize'] = (float(width), float(height))
309
+
310
+ elif choice == '2':
311
+ base = input(" Base font size (default 12): ").strip() or '12'
312
+ style_dict['font.size'] = float(base)
313
+ style_dict['axes.labelsize'] = float(base) + 2
314
+ style_dict['axes.titlesize'] = float(base) + 4
315
+
316
+ elif choice == '3':
317
+ lw = input(" Line width (default 2): ").strip() or '2'
318
+ style_dict['lines.linewidth'] = float(lw)
319
+
320
+ elif choice == '4':
321
+ grid = input(" Enable grid? (y/n): ").strip().lower()
322
+ style_dict['axes.grid'] = grid == 'y'
323
+ if style_dict['axes.grid']:
324
+ alpha = input(" Grid transparency (0-1, default 0.3): ").strip() or '0.3'
325
+ style_dict['grid.alpha'] = float(alpha)
326
+
327
+ elif choice == '5':
328
+ print(" Theme options: 1=Light, 2=Dark")
329
+ theme = input(" Select theme (1-2): ").strip()
330
+ if theme == '2':
331
+ style_dict.update(STYLE_PRESETS['dark'])
332
+
333
+ elif choice == '6':
334
+ break
335
+
336
+ return style_dict
337
+
338
+
339
+ def main():
340
+ """Main function."""
341
+ parser = argparse.ArgumentParser(
342
+ description='Matplotlib style configurator',
343
+ formatter_class=argparse.RawDescriptionHelpFormatter,
344
+ epilog="""
345
+ Examples:
346
+ # Show available presets
347
+ python style_configurator.py --list
348
+
349
+ # Preview a preset
350
+ python style_configurator.py --preset publication --preview
351
+
352
+ # Save a preset as .mplstyle file
353
+ python style_configurator.py --preset publication --output my_style.mplstyle
354
+
355
+ # Interactive mode
356
+ python style_configurator.py --interactive
357
+ """
358
+ )
359
+ parser.add_argument('--preset', type=str, choices=list(STYLE_PRESETS.keys()),
360
+ help='Use a predefined style preset')
361
+ parser.add_argument('--output', type=str,
362
+ help='Save style to .mplstyle file')
363
+ parser.add_argument('--preview', action='store_true',
364
+ help='Show style preview')
365
+ parser.add_argument('--list', action='store_true',
366
+ help='List available presets')
367
+ parser.add_argument('--interactive', action='store_true',
368
+ help='Run in interactive mode')
369
+
370
+ args = parser.parse_args()
371
+
372
+ if args.list:
373
+ list_available_presets()
374
+ # Also show currently available matplotlib styles
375
+ print("\nBuilt-in matplotlib styles:")
376
+ print("-" * 40)
377
+ for style in sorted(plt.style.available):
378
+ print(f" {style}")
379
+ return
380
+
381
+ if args.interactive:
382
+ style_dict = interactive_mode()
383
+ elif args.preset:
384
+ style_dict = STYLE_PRESETS[args.preset].copy()
385
+ print(f"Using '{args.preset}' preset")
386
+ else:
387
+ print("No preset or interactive mode specified. Showing default preview.")
388
+ style_dict = {}
389
+
390
+ if style_dict:
391
+ print_style_info(style_dict)
392
+
393
+ if args.output:
394
+ save_style_file(style_dict, args.output)
395
+
396
+ if args.preview or args.interactive:
397
+ print("Creating style preview...")
398
+ fig = create_style_preview(style_dict if style_dict else None)
399
+
400
+ if args.output:
401
+ preview_filename = args.output.replace('.mplstyle', '_preview.png')
402
+ plt.savefig(preview_filename, dpi=150, bbox_inches='tight')
403
+ print(f"Preview saved to {preview_filename}")
404
+
405
+ plt.show()
406
+
407
+
408
+ if __name__ == "__main__":
409
+ main()