@smake/eigen 1.0.2 → 1.1.1

package/eigen/Eigen/SPQRSupport

@@ -15,20 +15,27 @@
 #include "SuiteSparseQR.hpp"
 
 /** \ingroup Support_modules
-  * \defgroup SPQRSupport_Module SuiteSparseQR module
-  * 
-  * This module provides an interface to the SPQR library, which is part of the <a href="http://www.suitesparse.com">suitesparse</a> package.
-  *
-  * \code
-  * #include <Eigen/SPQRSupport>
-  * \endcode
-  *
-  * In order to use this module, the SPQR headers must be accessible from the include paths, and your binary must be linked to the SPQR library and its dependencies (Cholmod, AMD, COLAMD,...).
-  * For a cmake based project, you can use our FindSPQR.cmake and FindCholmod.Cmake modules
-  *
-  */
-
-#include "src/CholmodSupport/CholmodSupport.h"
+ * \defgroup SPQRSupport_Module SuiteSparseQR module
+ *
+ * This module provides an interface to the SPQR library, which is part of the <a
+ * href="http://www.suitesparse.com">suitesparse</a> package.
+ *
+ * \code
+ * #include <Eigen/SPQRSupport>
+ * \endcode
+ *
+ * In order to use this module, the SPQR headers must be accessible from the include paths, and your binary must be
+ * linked to the SPQR library and its dependencies (Cholmod, AMD, COLAMD,...). For a cmake based project, you can use
+ * our FindSPQR.cmake and FindCholmod.Cmake modules
+ *
+ */
+
+#include "CholmodSupport"
+
+// IWYU pragma: begin_exports
 #include "src/SPQRSupport/SuiteSparseQRSupport.h"
+// IWYU pragma: end_exports
+
+#include "src/Core/util/ReenableStupidWarnings.h"
 
 #endif

package/eigen/Eigen/SVD

@@ -15,37 +15,42 @@
 #include "src/Core/util/DisableStupidWarnings.h"
 
 /** \defgroup SVD_Module SVD module
-  *
-  *
-  *
-  * This module provides SVD decomposition for matrices (both real and complex).
-  * Two decomposition algorithms are provided:
-  *  - JacobiSVD implementing two-sided Jacobi iterations is numerically very accurate, fast for small matrices, but very slow for larger ones.
-  *  - BDCSVD implementing a recursive divide & conquer strategy on top of an upper-bidiagonalization which remains fast for large problems.
-  * These decompositions are accessible via the respective classes and following MatrixBase methods:
-  *  - MatrixBase::jacobiSvd()
-  *  - MatrixBase::bdcSvd()
-  *
-  * \code
-  * #include <Eigen/SVD>
-  * \endcode
-  */
+ *
+ *
+ *
+ * This module provides SVD decomposition for matrices (both real and complex).
+ * Two decomposition algorithms are provided:
+ *  - JacobiSVD implementing two-sided Jacobi iterations is numerically very accurate, fast for small matrices, but very
+ * slow for larger ones.
+ *  - BDCSVD implementing a recursive divide & conquer strategy on top of an upper-bidiagonalization which remains fast
+ * for large problems. These decompositions are accessible via the respective classes and following MatrixBase methods:
+ *  - MatrixBase::jacobiSvd()
+ *  - MatrixBase::bdcSvd()
+ *
+ * \code
+ * #include <Eigen/SVD>
+ * \endcode
+ */
 
+// IWYU pragma: begin_exports
 #include "src/misc/RealSvd2x2.h"
 #include "src/SVD/UpperBidiagonalization.h"
 #include "src/SVD/SVDBase.h"
 #include "src/SVD/JacobiSVD.h"
 #include "src/SVD/BDCSVD.h"
-#if defined(EIGEN_USE_LAPACKE) && !defined(EIGEN_USE_LAPACKE_STRICT)
+#ifdef EIGEN_USE_LAPACKE
 #ifdef EIGEN_USE_MKL
 #include "mkl_lapacke.h"
 #else
 #include "src/misc/lapacke.h"
 #endif
+#ifndef EIGEN_USE_LAPACKE_STRICT
 #include "src/SVD/JacobiSVD_LAPACKE.h"
 #endif
+#include "src/SVD/BDCSVD_LAPACKE.h"
+#endif
+// IWYU pragma: end_exports
 
 #include "src/Core/util/ReenableStupidWarnings.h"
 
-#endif // EIGEN_SVD_MODULE_H
-/* vim: set filetype=cpp et sw=2 ts=2 ai: */
+#endif  // EIGEN_SVD_MODULE_H

package/eigen/Eigen/Sparse

@@ -25,12 +25,9 @@
 
 #include "SparseCore"
 #include "OrderingMethods"
-#ifndef EIGEN_MPL2_ONLY
 #include "SparseCholesky"
-#endif
 #include "SparseLU"
 #include "SparseQR"
 #include "IterativeLinearSolvers"
 
-#endif // EIGEN_SPARSE_MODULE_H
-
+#endif  // EIGEN_SPARSE_MODULE_H

package/eigen/Eigen/SparseCholesky

@@ -15,31 +15,26 @@
 
 #include "src/Core/util/DisableStupidWarnings.h"
 
-/** 
-  * \defgroup SparseCholesky_Module SparseCholesky module
-  *
-  * This module currently provides two variants of the direct sparse Cholesky decomposition for selfadjoint (hermitian) matrices.
-  * Those decompositions are accessible via the following classes:
-  *  - SimplicialLLt,
-  *  - SimplicialLDLt
-  *
-  * Such problems can also be solved using the ConjugateGradient solver from the IterativeLinearSolvers module.
-  *
-  * \code
-  * #include <Eigen/SparseCholesky>
-  * \endcode
-  */
-
-#ifdef EIGEN_MPL2_ONLY
-#error The SparseCholesky module has nothing to offer in MPL2 only mode
-#endif
-
+/**
+ * \defgroup SparseCholesky_Module SparseCholesky module
+ *
+ * This module currently provides two variants of the direct sparse Cholesky decomposition for selfadjoint (hermitian)
+ * matrices. Those decompositions are accessible via the following classes:
+ *  - SimplicialLLt,
+ *  - SimplicialLDLt
+ *
+ * Such problems can also be solved using the ConjugateGradient solver from the IterativeLinearSolvers module.
+ *
+ * \code
+ * #include <Eigen/SparseCholesky>
+ * \endcode
+ */
+
+// IWYU pragma: begin_exports
 #include "src/SparseCholesky/SimplicialCholesky.h"
-
-#ifndef EIGEN_MPL2_ONLY
 #include "src/SparseCholesky/SimplicialCholesky_impl.h"
-#endif
+// IWYU pragma: end_exports
 
 #include "src/Core/util/ReenableStupidWarnings.h"
 
-#endif // EIGEN_SPARSECHOLESKY_MODULE_H
+#endif  // EIGEN_SPARSECHOLESKY_MODULE_H

package/eigen/Eigen/SparseCore

@@ -17,22 +17,24 @@
 #include <cstdlib>
 #include <cstring>
 #include <algorithm>
+#include <numeric>
 
-/** 
-  * \defgroup SparseCore_Module SparseCore module
-  *
-  * This module provides a sparse matrix representation, and basic associated matrix manipulations
-  * and operations.
-  *
-  * See the \ref TutorialSparse "Sparse tutorial"
-  *
-  * \code
-  * #include <Eigen/SparseCore>
-  * \endcode
-  *
-  * This module depends on: Core.
-  */
+/**
+ * \defgroup SparseCore_Module SparseCore module
+ *
+ * This module provides a sparse matrix representation, and basic associated matrix manipulations
+ * and operations.
+ *
+ * See the \ref TutorialSparse "Sparse tutorial"
+ *
+ * \code
+ * #include <Eigen/SparseCore>
+ * \endcode
+ *
+ * This module depends on: Core.
+ */
 
+// IWYU pragma: begin_exports
 #include "src/SparseCore/SparseUtil.h"
 #include "src/SparseCore/SparseMatrixBase.h"
 #include "src/SparseCore/SparseAssign.h"
@@ -41,7 +43,6 @@
 #include "src/SparseCore/SparseCompressedBase.h"
 #include "src/SparseCore/SparseMatrix.h"
 #include "src/SparseCore/SparseMap.h"
-#include "src/SparseCore/MappedSparseMatrix.h"
 #include "src/SparseCore/SparseVector.h"
 #include "src/SparseCore/SparseRef.h"
 #include "src/SparseCore/SparseCwiseUnaryOp.h"
@@ -62,8 +63,8 @@
 #include "src/SparseCore/SparsePermutation.h"
 #include "src/SparseCore/SparseFuzzy.h"
 #include "src/SparseCore/SparseSolverBase.h"
+// IWYU pragma: end_exports
 
 #include "src/Core/util/ReenableStupidWarnings.h"
 
-#endif // EIGEN_SPARSECORE_MODULE_H
-
+#endif  // EIGEN_SPARSECORE_MODULE_H

package/eigen/Eigen/SparseLU

@@ -13,18 +13,19 @@
 
 #include "SparseCore"
 
-/** 
-  * \defgroup SparseLU_Module SparseLU module
-  * This module defines a supernodal factorization of general sparse matrices.
-  * The code is fully optimized for supernode-panel updates with specialized kernels.
-  * Please, see the documentation of the SparseLU class for more details.
-  */
+/**
+ * \defgroup SparseLU_Module SparseLU module
+ * This module defines a supernodal factorization of general sparse matrices.
+ * The code is fully optimized for supernode-panel updates with specialized kernels.
+ * Please, see the documentation of the SparseLU class for more details.
+ */
 
 // Ordering interface
 #include "OrderingMethods"
 
-#include "src/SparseLU/SparseLU_gemm_kernel.h"
+#include "src/Core/util/DisableStupidWarnings.h"
 
+// IWYU pragma: begin_exports
 #include "src/SparseLU/SparseLU_Structs.h"
 #include "src/SparseLU/SparseLU_SupernodalMatrix.h"
 #include "src/SparseLU/SparseLUImpl.h"
@@ -42,5 +43,8 @@
 #include "src/SparseLU/SparseLU_pruneL.h"
 #include "src/SparseLU/SparseLU_Utils.h"
 #include "src/SparseLU/SparseLU.h"
+// IWYU pragma: end_exports
 
-#endif // EIGEN_SPARSELU_MODULE_H
+#include "src/Core/util/ReenableStupidWarnings.h"
+
+#endif  // EIGEN_SPARSELU_MODULE_H

package/eigen/Eigen/SparseQR

@@ -13,23 +13,25 @@
 #include "src/Core/util/DisableStupidWarnings.h"
 
 /** \defgroup SparseQR_Module SparseQR module
-  * \brief Provides QR decomposition for sparse matrices
-  * 
-  * This module provides a simplicial version of the left-looking Sparse QR decomposition. 
-  * The columns of the input matrix should be reordered to limit the fill-in during the 
-  * decomposition. Built-in methods (COLAMD, AMD) or external  methods (METIS) can be used to this end.
-  * See the \link OrderingMethods_Module OrderingMethods\endlink module for the list 
-  * of built-in and external ordering methods.
-  * 
-  * \code
-  * #include <Eigen/SparseQR>
-  * \endcode
-  * 
-  * 
-  */
+ * \brief Provides QR decomposition for sparse matrices
+ *
+ * This module provides a simplicial version of the left-looking Sparse QR decomposition.
+ * The columns of the input matrix should be reordered to limit the fill-in during the
+ * decomposition. Built-in methods (COLAMD, AMD) or external  methods (METIS) can be used to this end.
+ * See the \link OrderingMethods_Module OrderingMethods\endlink module for the list
+ * of built-in and external ordering methods.
+ *
+ * \code
+ * #include <Eigen/SparseQR>
+ * \endcode
+ *
+ *
+ */
 
+// IWYU pragma: begin_exports
 #include "src/SparseCore/SparseColEtree.h"
 #include "src/SparseQR/SparseQR.h"
+// IWYU pragma: end_exports
 
 #include "src/Core/util/ReenableStupidWarnings.h"
 

package/eigen/Eigen/StdDeque

@@ -14,14 +14,17 @@
 #include "Core"
 #include <deque>
 
-#if EIGEN_COMP_MSVC && EIGEN_OS_WIN64 && (EIGEN_MAX_STATIC_ALIGN_BYTES<=16) /* MSVC auto aligns up to 16 bytes in 64 bit builds */
+#if EIGEN_COMP_MSVC && EIGEN_OS_WIN64 && \
+    (EIGEN_MAX_STATIC_ALIGN_BYTES <= 16) /* MSVC auto aligns up to 16 bytes in 64 bit builds */
 
 #define EIGEN_DEFINE_STL_DEQUE_SPECIALIZATION(...)
 
 #else
 
+// IWYU pragma: begin_exports
 #include "src/StlSupport/StdDeque.h"
+// IWYU pragma: end_exports
 
 #endif
 
-#endif // EIGEN_STDDEQUE_MODULE_H
+#endif  // EIGEN_STDDEQUE_MODULE_H

package/eigen/Eigen/StdList

@@ -13,14 +13,17 @@
 #include "Core"
 #include <list>
 
-#if EIGEN_COMP_MSVC && EIGEN_OS_WIN64 && (EIGEN_MAX_STATIC_ALIGN_BYTES<=16) /* MSVC auto aligns up to 16 bytes in 64 bit builds */
+#if EIGEN_COMP_MSVC && EIGEN_OS_WIN64 && \
+    (EIGEN_MAX_STATIC_ALIGN_BYTES <= 16) /* MSVC auto aligns up to 16 bytes in 64 bit builds */
 
 #define EIGEN_DEFINE_STL_LIST_SPECIALIZATION(...)
 
 #else
 
+// IWYU pragma: begin_exports
 #include "src/StlSupport/StdList.h"
+// IWYU pragma: end_exports
 
 #endif
 
-#endif // EIGEN_STDLIST_MODULE_H
+#endif  // EIGEN_STDLIST_MODULE_H

package/eigen/Eigen/StdVector

@@ -14,14 +14,17 @@
 #include "Core"
 #include <vector>
 
-#if EIGEN_COMP_MSVC && EIGEN_OS_WIN64 && (EIGEN_MAX_STATIC_ALIGN_BYTES<=16) /* MSVC auto aligns up to 16 bytes in 64 bit builds */
+#if EIGEN_COMP_MSVC && EIGEN_OS_WIN64 && \
+    (EIGEN_MAX_STATIC_ALIGN_BYTES <= 16) /* MSVC auto aligns up to 16 bytes in 64 bit builds */
 
 #define EIGEN_DEFINE_STL_VECTOR_SPECIALIZATION(...)
 
 #else
 
+// IWYU pragma: begin_exports
 #include "src/StlSupport/StdVector.h"
+// IWYU pragma: end_exports
 
 #endif
 
-#endif // EIGEN_STDVECTOR_MODULE_H
+#endif  // EIGEN_STDVECTOR_MODULE_H

package/eigen/Eigen/SuperLUSupport

@@ -26,39 +26,45 @@ typedef int int_t;
 // If EMPTY was already defined then we don't undef it.
 
 #if defined(EIGEN_EMPTY_WAS_ALREADY_DEFINED)
-# undef EIGEN_EMPTY_WAS_ALREADY_DEFINED
+#undef EIGEN_EMPTY_WAS_ALREADY_DEFINED
 #elif defined(EMPTY)
-# undef EMPTY
+#undef EMPTY
 #endif
 
 #define SUPERLU_EMPTY (-1)
 
-namespace Eigen { struct SluMatrix; }
+namespace Eigen {
+struct SluMatrix;
+}
 
 /** \ingroup Support_modules
-  * \defgroup SuperLUSupport_Module SuperLUSupport module
-  *
-  * This module provides an interface to the <a href="http://crd-legacy.lbl.gov/~xiaoye/SuperLU/">SuperLU</a> library.
-  * It provides the following factorization class:
-  * - class SuperLU: a supernodal sequential LU factorization.
-  * - class SuperILU: a supernodal sequential incomplete LU factorization (to be used as a preconditioner for iterative methods).
-  *
-  * \warning This wrapper requires at least versions 4.0 of SuperLU. The 3.x versions are not supported.
-  *
-  * \warning When including this module, you have to use SUPERLU_EMPTY instead of EMPTY which is no longer defined because it is too polluting.
-  *
-  * \code
-  * #include <Eigen/SuperLUSupport>
-  * \endcode
-  *
-  * In order to use this module, the superlu headers must be accessible from the include paths, and your binary must be linked to the superlu library and its dependencies.
-  * The dependencies depend on how superlu has been compiled.
-  * For a cmake based project, you can use our FindSuperLU.cmake module to help you in this task.
-  *
-  */
+ * \defgroup SuperLUSupport_Module SuperLUSupport module
+ *
+ * This module provides an interface to the <a href="http://crd-legacy.lbl.gov/~xiaoye/SuperLU/">SuperLU</a> library.
+ * It provides the following factorization class:
+ * - class SuperLU: a supernodal sequential LU factorization.
+ * - class SuperILU: a supernodal sequential incomplete LU factorization (to be used as a preconditioner for iterative
+ * methods).
+ *
+ * \warning This wrapper requires at least versions 4.0 of SuperLU. The 3.x versions are not supported.
+ *
+ * \warning When including this module, you have to use SUPERLU_EMPTY instead of EMPTY which is no longer defined
+ * because it is too polluting.
+ *
+ * \code
+ * #include <Eigen/SuperLUSupport>
+ * \endcode
+ *
+ * In order to use this module, the superlu headers must be accessible from the include paths, and your binary must be
+ * linked to the superlu library and its dependencies. The dependencies depend on how superlu has been compiled. For a
+ * cmake based project, you can use our FindSuperLU.cmake module to help you in this task.
+ *
+ */
 
+// IWYU pragma: begin_exports
 #include "src/SuperLUSupport/SuperLUSupport.h"
+// IWYU pragma: end_exports
 
 #include "src/Core/util/ReenableStupidWarnings.h"
 
-#endif // EIGEN_SUPERLUSUPPORT_MODULE_H
+#endif  // EIGEN_SUPERLUSUPPORT_MODULE_H

package/eigen/Eigen/ThreadPool

@@ -0,0 +1,80 @@
+// This file is part of Eigen, a lightweight C++ template library
+// for linear algebra.
+//
+// Copyright (C) 2016 Benoit Steiner <benoit.steiner.goog@gmail.com>
+//
+// This Source Code Form is subject to the terms of the Mozilla
+// Public License v. 2.0. If a copy of the MPL was not distributed
+// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
+
+#ifndef EIGEN_THREADPOOL_MODULE_H
+#define EIGEN_THREADPOOL_MODULE_H
+
+#include "Core"
+
+#include "src/Core/util/DisableStupidWarnings.h"
+
+/** \defgroup ThreadPool_Module ThreadPool Module
+ *
+ * This module provides 2 threadpool implementations
+ *  - a simple reference implementation
+ *  - a faster non blocking implementation
+ *
+ * \code
+ * #include <Eigen/ThreadPool>
+ * \endcode
+ */
+
+#include <cstddef>
+#include <cstring>
+#include <time.h>
+
+#include <vector>
+#include <atomic>
+#include <condition_variable>
+#include <deque>
+#include <mutex>
+#include <thread>
+#include <functional>
+#include <memory>
+#include <utility>
+
+// There are non-parenthesized calls to "max" in the  <unordered_map> header,
+// which trigger a check in test/main.h causing compilation to fail.
+// We work around the check here by removing the check for max in
+// the case where we have to emulate thread_local.
+#ifdef max
+#undef max
+#endif
+#include <unordered_map>
+
+#include "src/Core/util/Meta.h"
+#include "src/Core/util/MaxSizeVector.h"
+
+#ifndef EIGEN_MUTEX
+#define EIGEN_MUTEX std::mutex
+#endif
+#ifndef EIGEN_MUTEX_LOCK
+#define EIGEN_MUTEX_LOCK std::unique_lock<std::mutex>
+#endif
+#ifndef EIGEN_CONDVAR
+#define EIGEN_CONDVAR std::condition_variable
+#endif
+
+// IWYU pragma: begin_exports
+#include "src/ThreadPool/ThreadLocal.h"
+#include "src/ThreadPool/ThreadYield.h"
+#include "src/ThreadPool/ThreadCancel.h"
+#include "src/ThreadPool/EventCount.h"
+#include "src/ThreadPool/RunQueue.h"
+#include "src/ThreadPool/ThreadPoolInterface.h"
+#include "src/ThreadPool/ThreadEnvironment.h"
+#include "src/ThreadPool/Barrier.h"
+#include "src/ThreadPool/NonBlockingThreadPool.h"
+#include "src/ThreadPool/CoreThreadPoolDevice.h"
+#include "src/ThreadPool/ForkJoin.h"
+// IWYU pragma: end_exports
+
+#include "src/Core/util/ReenableStupidWarnings.h"
+
+#endif  // EIGEN_CXX11_THREADPOOL_MODULE_H

package/eigen/Eigen/UmfPackSupport

@@ -17,24 +17,26 @@ extern "C" {
 }
 
 /** \ingroup Support_modules
-  * \defgroup UmfPackSupport_Module UmfPackSupport module
-  *
-  * This module provides an interface to the UmfPack library which is part of the <a href="http://www.suitesparse.com">suitesparse</a> package.
-  * It provides the following factorization class:
-  * - class UmfPackLU: a multifrontal sequential LU factorization.
-  *
-  * \code
-  * #include <Eigen/UmfPackSupport>
-  * \endcode
-  *
-  * In order to use this module, the umfpack headers must be accessible from the include paths, and your binary must be linked to the umfpack library and its dependencies.
-  * The dependencies depend on how umfpack has been compiled.
-  * For a cmake based project, you can use our FindUmfPack.cmake module to help you in this task.
-  *
-  */
-
+ * \defgroup UmfPackSupport_Module UmfPackSupport module
+ *
+ * This module provides an interface to the UmfPack library which is part of the <a
+ * href="http://www.suitesparse.com">suitesparse</a> package. It provides the following factorization class:
+ * - class UmfPackLU: a multifrontal sequential LU factorization.
+ *
+ * \code
+ * #include <Eigen/UmfPackSupport>
+ * \endcode
+ *
+ * In order to use this module, the umfpack headers must be accessible from the include paths, and your binary must be
+ * linked to the umfpack library and its dependencies. The dependencies depend on how umfpack has been compiled. For a
+ * cmake based project, you can use our FindUmfPack.cmake module to help you in this task.
+ *
+ */
+
+// IWYU pragma: begin_exports
 #include "src/UmfPackSupport/UmfPackSupport.h"
+// IWYU pragma: endexports
 
 #include "src/Core/util/ReenableStupidWarnings.h"
 
-#endif // EIGEN_UMFPACKSUPPORT_MODULE_H
+#endif  // EIGEN_UMFPACKSUPPORT_MODULE_H

package/eigen/Eigen/Version

@@ -0,0 +1,14 @@
+#ifndef EIGEN_VERSION_H
+#define EIGEN_VERSION_H
+
+// The "WORLD" version will forever remain "3" for the "Eigen3" library.
+#define EIGEN_WORLD_VERSION 3
+// As of Eigen3 5.0.0, we have moved to Semantic Versioning (semver.org).
+#define EIGEN_MAJOR_VERSION 5
+#define EIGEN_MINOR_VERSION 0
+#define EIGEN_PATCH_VERSION 1
+#define EIGEN_PRERELEASE_VERSION ""
+#define EIGEN_BUILD_VERSION ""
+#define EIGEN_VERSION_STRING "5.0.1"
+
+#endif  // EIGEN_VERSION_H