@researai/deepscientist 1.5.16 → 1.6.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/AGENTS.md +309 -130
- package/AISB/catalog/aisb.b1.agentic_coding.yaml +244 -0
- package/AISB/catalog/aisb.b10.climate_earth.yaml +235 -0
- package/AISB/catalog/aisb.b11.model_efficiency.yaml +231 -0
- package/AISB/catalog/aisb.b12.embodied_ai.yaml +238 -0
- package/AISB/catalog/aisb.b2.agent_systems.yaml +229 -0
- package/AISB/catalog/aisb.b3.self_evolving_rl.yaml +237 -0
- package/AISB/catalog/aisb.b4.lm_reasoning.yaml +240 -0
- package/AISB/catalog/aisb.b5.math_proof.yaml +235 -0
- package/AISB/catalog/aisb.b6.research_process.yaml +243 -0
- package/AISB/catalog/aisb.b7.multimodal_fusion.yaml +232 -0
- package/AISB/catalog/aisb.b8.lifesci_drug.yaml +275 -0
- package/AISB/catalog/aisb.b9.material_science.yaml +237 -0
- package/AISB/catalog/aisb.t3.001_savvy.yaml +159 -0
- package/AISB/catalog/aisb.t3.001_savvy.zh.yaml +121 -0
- package/AISB/catalog/aisb.t3.002_pinet.yaml +189 -0
- package/AISB/catalog/aisb.t3.002_pinet.zh.yaml +130 -0
- package/AISB/catalog/aisb.t3.004_decentralattn.yaml +184 -0
- package/AISB/catalog/aisb.t3.004_decentralattn.zh.yaml +153 -0
- package/AISB/catalog/aisb.t3.005_tsae.yaml +193 -0
- package/AISB/catalog/aisb.t3.005_tsae.zh.yaml +139 -0
- package/AISB/catalog/aisb.t3.006_physense.yaml +194 -0
- package/AISB/catalog/aisb.t3.006_physense.zh.yaml +118 -0
- package/AISB/catalog/aisb.t3.007_reasoningiqa.yaml +169 -0
- package/AISB/catalog/aisb.t3.007_reasoningiqa.zh.yaml +133 -0
- package/AISB/catalog/aisb.t3.008_meanflows.yaml +188 -0
- package/AISB/catalog/aisb.t3.008_meanflows.zh.yaml +140 -0
- package/AISB/catalog/aisb.t3.009_scoremissing.yaml +179 -0
- package/AISB/catalog/aisb.t3.009_scoremissing.zh.yaml +119 -0
- package/AISB/catalog/aisb.t3.010_suitabilityfilter.yaml +221 -0
- package/AISB/catalog/aisb.t3.010_suitabilityfilter.zh.yaml +141 -0
- package/AISB/catalog/aisb.t3.011_osd.yaml +206 -0
- package/AISB/catalog/aisb.t3.011_osd.zh.yaml +163 -0
- package/AISB/catalog/aisb.t3.012_efficientqat.yaml +206 -0
- package/AISB/catalog/aisb.t3.012_efficientqat.zh.yaml +159 -0
- package/AISB/catalog/aisb.t3.013_appl.yaml +152 -0
- package/AISB/catalog/aisb.t3.013_appl.zh.yaml +126 -0
- package/AISB/catalog/aisb.t3.014_piguard.yaml +207 -0
- package/AISB/catalog/aisb.t3.014_piguard.zh.yaml +164 -0
- package/AISB/catalog/aisb.t3.015_frspec.yaml +209 -0
- package/AISB/catalog/aisb.t3.015_frspec.zh.yaml +163 -0
- package/AISB/catalog/aisb.t3.016_mathfusion.yaml +166 -0
- package/AISB/catalog/aisb.t3.016_mathfusion.zh.yaml +145 -0
- package/AISB/catalog/aisb.t3.017_multimodalglp.yaml +171 -0
- package/AISB/catalog/aisb.t3.017_multimodalglp.zh.yaml +122 -0
- package/AISB/catalog/aisb.t3.018_cotsynth.yaml +206 -0
- package/AISB/catalog/aisb.t3.018_cotsynth.zh.yaml +162 -0
- package/AISB/catalog/aisb.t3.019_dyscaleut.yaml +211 -0
- package/AISB/catalog/aisb.t3.019_dyscaleut.zh.yaml +148 -0
- package/AISB/catalog/aisb.t3.020_aristotle.yaml +173 -0
- package/AISB/catalog/aisb.t3.020_aristotle.zh.yaml +119 -0
- package/AISB/catalog/aisb.t3.021_tokenrecycling.yaml +160 -0
- package/AISB/catalog/aisb.t3.021_tokenrecycling.zh.yaml +129 -0
- package/AISB/catalog/aisb.t3.022_chainofreasoning.yaml +204 -0
- package/AISB/catalog/aisb.t3.022_chainofreasoning.zh.yaml +161 -0
- package/AISB/catalog/aisb.t3.023_guidedembed.yaml +211 -0
- package/AISB/catalog/aisb.t3.023_guidedembed.zh.yaml +189 -0
- package/AISB/catalog/aisb.t3.024_outputcentric.yaml +148 -0
- package/AISB/catalog/aisb.t3.024_outputcentric.zh.yaml +131 -0
- package/AISB/catalog/aisb.t3.025_deeper.yaml +143 -0
- package/AISB/catalog/aisb.t3.025_deeper.zh.yaml +116 -0
- package/AISB/catalog/aisb.t3.026_gartkg.yaml +195 -0
- package/AISB/catalog/aisb.t3.026_gartkg.zh.yaml +127 -0
- package/AISB/catalog/aisb.t3.027_citeeval.yaml +182 -0
- package/AISB/catalog/aisb.t3.027_citeeval.zh.yaml +135 -0
- package/AISB/catalog/aisb.t3.028_sbam.yaml +206 -0
- package/AISB/catalog/aisb.t3.028_sbam.zh.yaml +166 -0
- package/AISB/catalog/aisb.t3.029_cdqgeoembed.yaml +224 -0
- package/AISB/catalog/aisb.t3.029_cdqgeoembed.zh.yaml +142 -0
- package/AISB/catalog/aisb.t3.030_processrm.yaml +211 -0
- package/AISB/catalog/aisb.t3.030_processrm.zh.yaml +166 -0
- package/AISB/catalog/aisb.t3.031_circuitstability.yaml +172 -0
- package/AISB/catalog/aisb.t3.031_circuitstability.zh.yaml +134 -0
- package/AISB/catalog/aisb.t3.032_ptsolver.yaml +169 -0
- package/AISB/catalog/aisb.t3.032_ptsolver.zh.yaml +135 -0
- package/AISB/catalog/aisb.t3.033_gcse.yaml +144 -0
- package/AISB/catalog/aisb.t3.033_gcse.zh.yaml +126 -0
- package/AISB/catalog/aisb.t3.034_ensemblewm.yaml +183 -0
- package/AISB/catalog/aisb.t3.034_ensemblewm.zh.yaml +146 -0
- package/AISB/catalog/aisb.t3.035_moralvalueswa.yaml +207 -0
- package/AISB/catalog/aisb.t3.035_moralvalueswa.zh.yaml +165 -0
- package/AISB/catalog/aisb.t3.036_weakstrongpref.yaml +210 -0
- package/AISB/catalog/aisb.t3.036_weakstrongpref.zh.yaml +194 -0
- package/AISB/catalog/aisb.t3.037_dementiamask.yaml +172 -0
- package/AISB/catalog/aisb.t3.037_dementiamask.zh.yaml +132 -0
- package/AISB/catalog/aisb.t3.038_tinysam.yaml +284 -0
- package/AISB/catalog/aisb.t3.038_tinysam.zh.yaml +240 -0
- package/AISB/catalog/aisb.t3.039_calf.yaml +224 -0
- package/AISB/catalog/aisb.t3.039_calf.zh.yaml +194 -0
- package/AISB/catalog/aisb.t3.040_graniteguardian.yaml +199 -0
- package/AISB/catalog/aisb.t3.040_graniteguardian.zh.yaml +174 -0
- package/AISB/catalog/aisb.t3.041_amdm.yaml +149 -0
- package/AISB/catalog/aisb.t3.041_amdm.zh.yaml +137 -0
- package/AISB/catalog/aisb.t3.042_xpatch.yaml +216 -0
- package/AISB/catalog/aisb.t3.042_xpatch.zh.yaml +182 -0
- package/AISB/catalog/aisb.t3.043_vhm.yaml +268 -0
- package/AISB/catalog/aisb.t3.043_vhm.zh.yaml +193 -0
- package/AISB/catalog/aisb.t3.044_rgvi.yaml +224 -0
- package/AISB/catalog/aisb.t3.044_rgvi.zh.yaml +176 -0
- package/AISB/catalog/aisb.t3.045_pslstm.yaml +203 -0
- package/AISB/catalog/aisb.t3.045_pslstm.zh.yaml +179 -0
- package/AISB/catalog/aisb.t3.046_nonstatts.yaml +208 -0
- package/AISB/catalog/aisb.t3.046_nonstatts.zh.yaml +194 -0
- package/AISB/catalog/aisb.t3.047_timepfn.yaml +156 -0
- package/AISB/catalog/aisb.t3.047_timepfn.zh.yaml +124 -0
- package/AISB/catalog/aisb.t3.048_proxyspex.yaml +148 -0
- package/AISB/catalog/aisb.t3.048_proxyspex.zh.yaml +125 -0
- package/AISB/catalog/aisb.t3.049_hogwildinference.yaml +183 -0
- package/AISB/catalog/aisb.t3.049_hogwildinference.zh.yaml +138 -0
- package/AISB/catalog/aisb.t3.050_causalpfn.yaml +214 -0
- package/AISB/catalog/aisb.t3.050_causalpfn.zh.yaml +190 -0
- package/AISB/catalog/aisb.t3.051_flashtp.yaml +169 -0
- package/AISB/catalog/aisb.t3.051_flashtp.zh.yaml +124 -0
- package/AISB/catalog/aisb.t3.052_nsdiff.yaml +155 -0
- package/AISB/catalog/aisb.t3.052_nsdiff.zh.yaml +138 -0
- package/AISB/catalog/aisb.t3.053_k2vae.yaml +158 -0
- package/AISB/catalog/aisb.t3.053_k2vae.zh.yaml +132 -0
- package/AISB/catalog/aisb.t3.054_timebase.yaml +178 -0
- package/AISB/catalog/aisb.t3.054_timebase.zh.yaml +158 -0
- package/AISB/catalog/aisb.t3.055_csbrain.yaml +238 -0
- package/AISB/catalog/aisb.t3.055_csbrain.zh.yaml +184 -0
- package/AISB/catalog/aisb.t3.056_infosam.yaml +224 -0
- package/AISB/catalog/aisb.t3.056_infosam.zh.yaml +189 -0
- package/AISB/catalog/aisb.t3.057_mdreid.yaml +129 -0
- package/AISB/catalog/aisb.t3.057_mdreid.zh.yaml +117 -0
- package/AISB/catalog/aisb.t3.058_mindglitch.yaml +171 -0
- package/AISB/catalog/aisb.t3.058_mindglitch.zh.yaml +145 -0
- package/AISB/catalog/aisb.t3.059_selfsupervised.yaml +154 -0
- package/AISB/catalog/aisb.t3.059_selfsupervised.zh.yaml +125 -0
- package/AISB/catalog/aisb.t3.060_iaggad.yaml +121 -0
- package/AISB/catalog/aisb.t3.060_iaggad.zh.yaml +100 -0
- package/AISB/catalog/aisb.t3.061_hsgkn.yaml +136 -0
- package/AISB/catalog/aisb.t3.061_hsgkn.zh.yaml +113 -0
- package/AISB/catalog/aisb.t3.062_visionts.yaml +237 -0
- package/AISB/catalog/aisb.t3.062_visionts.zh.yaml +216 -0
- package/AISB/catalog/aisb.t3.063_tsrag.yaml +162 -0
- package/AISB/catalog/aisb.t3.063_tsrag.zh.yaml +138 -0
- package/AISB/catalog/aisb.t3.064_pir.yaml +221 -0
- package/AISB/catalog/aisb.t3.064_pir.zh.yaml +197 -0
- package/AISB/catalog/aisb.t3.065_proteinbinding.yaml +234 -0
- package/AISB/catalog/aisb.t3.065_proteinbinding.zh.yaml +167 -0
- package/AISB/catalog/aisb.t3.066_tropicalattention.yaml +267 -0
- package/AISB/catalog/aisb.t3.066_tropicalattention.zh.yaml +229 -0
- package/AISB/catalog/aisb.t3.067_kanad.yaml +193 -0
- package/AISB/catalog/aisb.t3.067_kanad.zh.yaml +167 -0
- package/AISB/catalog/aisb.t3.068_sempo.yaml +187 -0
- package/AISB/catalog/aisb.t3.068_sempo.zh.yaml +148 -0
- package/AISB/catalog/aisb.t3.069_treehfd.yaml +129 -0
- package/AISB/catalog/aisb.t3.069_treehfd.zh.yaml +111 -0
- package/AISB/catalog/aisb.t3.070_certifiedunlearning.yaml +224 -0
- package/AISB/catalog/aisb.t3.070_certifiedunlearning.zh.yaml +171 -0
- package/AISB/catalog/aisb.t3.071_neuralmjd.yaml +142 -0
- package/AISB/catalog/aisb.t3.071_neuralmjd.zh.yaml +120 -0
- package/AISB/catalog/aisb.t3.072_fedgmt.yaml +181 -0
- package/AISB/catalog/aisb.t3.072_fedgmt.zh.yaml +158 -0
- package/AISB/catalog/aisb.t3.073_rld.yaml +161 -0
- package/AISB/catalog/aisb.t3.073_rld.zh.yaml +129 -0
- package/AISB/catalog/aisb.t3.074_lsvi.yaml +163 -0
- package/AISB/catalog/aisb.t3.074_lsvi.zh.yaml +129 -0
- package/AISB/catalog/aisb.t3.075_treeslicedentropy.yaml +201 -0
- package/AISB/catalog/aisb.t3.075_treeslicedentropy.zh.yaml +148 -0
- package/AISB/catalog/aisb.t3.076_aanet.yaml +169 -0
- package/AISB/catalog/aisb.t3.076_aanet.zh.yaml +129 -0
- package/AISB/catalog/aisb.t3.077_cmnn.yaml +199 -0
- package/AISB/catalog/aisb.t3.077_cmnn.zh.yaml +165 -0
- package/AISB/catalog/aisb.t3.078_conformalanomaly.yaml +146 -0
- package/AISB/catalog/aisb.t3.078_conformalanomaly.zh.yaml +117 -0
- package/AISB/catalog/aisb.t3.079_dpfkmeans.yaml +131 -0
- package/AISB/catalog/aisb.t3.079_dpfkmeans.zh.yaml +104 -0
- package/AISB/catalog/aisb.t3.080_latentscorereweight.yaml +169 -0
- package/AISB/catalog/aisb.t3.080_latentscorereweight.zh.yaml +123 -0
- package/AISB/catalog/aisb.t3.081_qmamba.yaml +150 -0
- package/AISB/catalog/aisb.t3.081_qmamba.zh.yaml +117 -0
- package/AISB/catalog/aisb.t3.082_onlinellmrouting.yaml +160 -0
- package/AISB/catalog/aisb.t3.082_onlinellmrouting.zh.yaml +133 -0
- package/AISB/catalog/aisb.t3.083_starformer.yaml +178 -0
- package/AISB/catalog/aisb.t3.083_starformer.zh.yaml +140 -0
- package/AISB/catalog/aisb.t3.084_ift.yaml +139 -0
- package/AISB/catalog/aisb.t3.084_ift.zh.yaml +111 -0
- package/AISB/catalog/aisb.t3.085_neuralsurv.yaml +183 -0
- package/AISB/catalog/aisb.t3.085_neuralsurv.zh.yaml +143 -0
- package/AISB/catalog/aisb.t3.086_stella.yaml +197 -0
- package/AISB/catalog/aisb.t3.086_stella.zh.yaml +142 -0
- package/AISB/catalog/aisb.t3.087_moses.yaml +167 -0
- package/AISB/catalog/aisb.t3.087_moses.zh.yaml +132 -0
- package/AISB/catalog/aisb.t3.088_channelnorm.yaml +140 -0
- package/AISB/catalog/aisb.t3.088_channelnorm.zh.yaml +109 -0
- package/AISB/catalog/aisb.t3.089_causalvelocity.yaml +730 -0
- package/AISB/catalog/aisb.t3.089_causalvelocity.zh.yaml +668 -0
- package/AISB/catalog/aisb.t3.090_rstib.yaml +144 -0
- package/AISB/catalog/aisb.t3.090_rstib.zh.yaml +109 -0
- package/AISB/catalog/aisb.t3.091_timeawarecausal.yaml +132 -0
- package/AISB/catalog/aisb.t3.091_timeawarecausal.zh.yaml +107 -0
- package/AISB/catalog/aisb.t3.092_kmeanslocalopt.yaml +138 -0
- package/AISB/catalog/aisb.t3.092_kmeanslocalopt.zh.yaml +110 -0
- package/AISB/catalog/aisb.t3.093_fedwmsam.yaml +134 -0
- package/AISB/catalog/aisb.t3.093_fedwmsam.zh.yaml +106 -0
- package/AISB/catalog/aisb.t3.094_boundre.yaml +147 -0
- package/AISB/catalog/aisb.t3.094_boundre.zh.yaml +114 -0
- package/AISB/catalog/aisb.t3.095_fastfeaturecp.yaml +153 -0
- package/AISB/catalog/aisb.t3.095_fastfeaturecp.zh.yaml +118 -0
- package/AISB/catalog/aisb.t3.096_m3svm.yaml +189 -0
- package/AISB/catalog/aisb.t3.096_m3svm.zh.yaml +149 -0
- package/AISB/catalog/aisb.t3.097_wassersteintl.yaml +212 -0
- package/AISB/catalog/aisb.t3.097_wassersteintl.zh.yaml +169 -0
- package/AISB/catalog/aisb.t3.098_xmahalanobis.yaml +171 -0
- package/AISB/catalog/aisb.t3.098_xmahalanobis.zh.yaml +127 -0
- package/AISB/catalog/aisb.t3.099_ollalanding.yaml +248 -0
- package/AISB/catalog/aisb.t3.099_ollalanding.zh.yaml +182 -0
- package/AISB/catalog/aisb.t3.100_invmissingdata.yaml +179 -0
- package/AISB/catalog/aisb.t3.100_invmissingdata.zh.yaml +150 -0
- package/AISB/catalog/aisb.t3.101_acia.yaml +164 -0
- package/AISB/catalog/aisb.t3.101_acia.zh.yaml +109 -0
- package/AISB/catalog/aisb.t3.102_stochasticff.yaml +178 -0
- package/AISB/catalog/aisb.t3.102_stochasticff.zh.yaml +130 -0
- package/AISB/catalog/aisb.t3.103_qdcp.yaml +150 -0
- package/AISB/catalog/aisb.t3.103_qdcp.zh.yaml +116 -0
- package/AISB/catalog/aisb.t3.104_balancedactiveinf.yaml +137 -0
- package/AISB/catalog/aisb.t3.104_balancedactiveinf.zh.yaml +104 -0
- package/AISB/catalog/aisb.t3.105_binaryclasseval.yaml +161 -0
- package/AISB/catalog/aisb.t3.105_binaryclasseval.zh.yaml +130 -0
- package/AISB/image/001_aisb.t3.001_savvy.jpg +0 -0
- package/AISB/image/002_aisb.t3.002_pinet.jpg +0 -0
- package/AISB/image/003_aisb.t3.003_dmsqd.jpg +0 -0
- package/AISB/image/004_aisb.t3.004_decentralattn.jpg +0 -0
- package/AISB/image/005_aisb.t3.005_tsae.jpg +0 -0
- package/AISB/image/006_aisb.t3.006_physense.jpg +0 -0
- package/AISB/image/007_aisb.t3.007_reasoningiqa.jpg +0 -0
- package/AISB/image/008_aisb.t3.008_meanflows.jpg +0 -0
- package/AISB/image/009_aisb.t3.009_scoremissing.jpg +0 -0
- package/AISB/image/010_aisb.t3.010_suitabilityfilter.jpg +0 -0
- package/AISB/image/011_aisb.t3.011_osd.jpg +0 -0
- package/AISB/image/012_aisb.t3.012_efficientqat.jpg +0 -0
- package/AISB/image/013_aisb.t3.013_appl.jpg +0 -0
- package/AISB/image/014_aisb.t3.014_piguard.jpg +0 -0
- package/AISB/image/015_aisb.t3.015_frspec.jpg +0 -0
- package/AISB/image/016_aisb.t3.016_mathfusion.jpg +0 -0
- package/AISB/image/017_aisb.t3.017_multimodalglp.jpg +0 -0
- package/AISB/image/018_aisb.t3.018_cotsynth.jpg +0 -0
- package/AISB/image/019_aisb.t3.019_dyscaleut.jpg +0 -0
- package/AISB/image/020_aisb.t3.020_aristotle.jpg +0 -0
- package/AISB/image/021_aisb.t3.021_tokenrecycling.jpg +0 -0
- package/AISB/image/022_aisb.t3.022_chainofreasoning.jpg +0 -0
- package/AISB/image/023_aisb.t3.023_guidedembed.jpg +0 -0
- package/AISB/image/024_aisb.t3.024_outputcentric.jpg +0 -0
- package/AISB/image/025_aisb.t3.025_deeper.jpg +0 -0
- package/AISB/image/026_aisb.t3.026_gartkg.jpg +0 -0
- package/AISB/image/027_aisb.t3.027_citeeval.jpg +0 -0
- package/AISB/image/028_aisb.t3.028_sbam.jpg +0 -0
- package/AISB/image/029_aisb.t3.029_cdqgeoembed.jpg +0 -0
- package/AISB/image/030_aisb.t3.030_processrm.jpg +0 -0
- package/AISB/image/031_aisb.t3.031_circuitstability.jpg +0 -0
- package/AISB/image/032_aisb.t3.032_ptsolver.jpg +0 -0
- package/AISB/image/033_aisb.t3.033_gcse.jpg +0 -0
- package/AISB/image/034_aisb.t3.034_ensemblewm.jpg +0 -0
- package/AISB/image/035_aisb.t3.035_moralvalueswa.jpg +0 -0
- package/AISB/image/036_aisb.t3.036_weakstrongpref.jpg +0 -0
- package/AISB/image/037_aisb.t3.037_dementiamask.jpg +0 -0
- package/AISB/image/038_aisb.t3.038_tinysam.jpg +0 -0
- package/AISB/image/039_aisb.t3.039_calf.jpg +0 -0
- package/AISB/image/040_aisb.t3.040_graniteguardian.jpg +0 -0
- package/AISB/image/041_aisb.t3.041_amdm.jpg +0 -0
- package/AISB/image/042_aisb.t3.042_xpatch.jpg +0 -0
- package/AISB/image/043_aisb.t3.043_vhm.jpg +0 -0
- package/AISB/image/044_aisb.t3.044_rgvi.jpg +0 -0
- package/AISB/image/045_aisb.t3.045_pslstm.jpg +0 -0
- package/AISB/image/046_aisb.t3.046_nonstatts.jpg +0 -0
- package/AISB/image/047_aisb.t3.047_timepfn.jpg +0 -0
- package/AISB/image/048_aisb.t3.048_proxyspex.jpg +0 -0
- package/AISB/image/049_aisb.t3.049_hogwildinference.jpg +0 -0
- package/AISB/image/050_aisb.t3.050_causalpfn.jpg +0 -0
- package/AISB/image/051_aisb.t3.051_flashtp.jpg +0 -0
- package/AISB/image/052_aisb.t3.052_nsdiff.jpg +0 -0
- package/AISB/image/053_aisb.t3.053_k2vae.jpg +0 -0
- package/AISB/image/054_aisb.t3.054_timebase.jpg +0 -0
- package/AISB/image/055_aisb.t3.055_csbrain.jpg +0 -0
- package/AISB/image/056_aisb.t3.056_infosam.jpg +0 -0
- package/AISB/image/057_aisb.t3.057_mdreid.jpg +0 -0
- package/AISB/image/058_aisb.t3.058_mindglitch.jpg +0 -0
- package/AISB/image/059_aisb.t3.059_selfsupervised.jpg +0 -0
- package/AISB/image/060_aisb.t3.060_iaggad.jpg +0 -0
- package/AISB/image/061_aisb.t3.061_hsgkn.jpg +0 -0
- package/AISB/image/062_aisb.t3.062_visionts.jpg +0 -0
- package/AISB/image/063_aisb.t3.063_tsrag.jpg +0 -0
- package/AISB/image/064_aisb.t3.064_pir.jpg +0 -0
- package/AISB/image/065_aisb.t3.065_proteinbinding.jpg +0 -0
- package/AISB/image/066_aisb.t3.066_tropicalattention.jpg +0 -0
- package/AISB/image/067_aisb.t3.067_kanad.jpg +0 -0
- package/AISB/image/068_aisb.t3.068_sempo.jpg +0 -0
- package/AISB/image/069_aisb.t3.069_treehfd.jpg +0 -0
- package/AISB/image/070_aisb.t3.070_certifiedunlearning.jpg +0 -0
- package/AISB/image/071_aisb.t3.071_neuralmjd.jpg +0 -0
- package/AISB/image/072_aisb.t3.072_fedgmt.jpg +0 -0
- package/AISB/image/073_aisb.t3.073_rld.jpg +0 -0
- package/AISB/image/074_aisb.t3.074_lsvi.jpg +0 -0
- package/AISB/image/075_aisb.t3.075_treeslicedentropy.jpg +0 -0
- package/AISB/image/076_aisb.t3.076_aanet.jpg +0 -0
- package/AISB/image/077_aisb.t3.077_cmnn.jpg +0 -0
- package/AISB/image/078_aisb.t3.078_conformalanomaly.jpg +0 -0
- package/AISB/image/079_aisb.t3.079_dpfkmeans.jpg +0 -0
- package/AISB/image/080_aisb.t3.080_latentscorereweight.jpg +0 -0
- package/AISB/image/081_aisb.t3.081_qmamba.jpg +0 -0
- package/AISB/image/082_aisb.t3.082_onlinellmrouting.jpg +0 -0
- package/AISB/image/083_aisb.t3.083_starformer.jpg +0 -0
- package/AISB/image/084_aisb.t3.084_ift.jpg +0 -0
- package/AISB/image/085_aisb.t3.085_neuralsurv.jpg +0 -0
- package/AISB/image/086_aisb.t3.086_stella.jpg +0 -0
- package/AISB/image/087_aisb.t3.087_moses.jpg +0 -0
- package/AISB/image/088_aisb.t3.088_channelnorm.jpg +0 -0
- package/AISB/image/089_aisb.t3.089_causalvelocity.jpg +0 -0
- package/AISB/image/090_aisb.t3.090_rstib.jpg +0 -0
- package/AISB/image/091_aisb.t3.091_timeawarecausal.jpg +0 -0
- package/AISB/image/092_aisb.t3.092_kmeanslocalopt.jpg +0 -0
- package/AISB/image/093_aisb.t3.093_fedwmsam.jpg +0 -0
- package/AISB/image/094_aisb.t3.094_boundre.jpg +0 -0
- package/AISB/image/095_aisb.t3.095_fastfeaturecp.jpg +0 -0
- package/AISB/image/096_aisb.t3.096_m3svm.jpg +0 -0
- package/AISB/image/097_aisb.t3.097_wassersteintl.jpg +0 -0
- package/AISB/image/098_aisb.t3.098_xmahalanobis.jpg +0 -0
- package/AISB/image/099_aisb.t3.099_ollalanding.jpg +0 -0
- package/AISB/image/100_aisb.t3.100_invmissingdata.jpg +0 -0
- package/AISB/image/101_aisb.t3.101_acia.jpg +0 -0
- package/AISB/image/102_aisb.t3.102_stochasticff.jpg +0 -0
- package/AISB/image/103_aisb.t3.103_qdcp.jpg +0 -0
- package/AISB/image/104_aisb.t3.104_balancedactiveinf.jpg +0 -0
- package/AISB/image/105_aisb.t3.105_binaryclasseval.jpg +0 -0
- package/AISB/image/106_aisb.t1.reasoning_lite.jpg +0 -0
- package/AISB/image/107_aisb.t2.paper_audit.jpg +0 -0
- package/AISB/image/108_aisb.t3.multi_gpu_search.jpg +0 -0
- package/AISB/image/109_aisb.t3.tdc_admet.jpg +0 -0
- package/AISB/image/aisb.b1.agentic_coding.svg +16 -0
- package/AISB/image/aisb.b10.climate_earth.svg +16 -0
- package/AISB/image/aisb.b11.model_efficiency.svg +16 -0
- package/AISB/image/aisb.b12.embodied_ai.svg +16 -0
- package/AISB/image/aisb.b2.agent_systems.svg +16 -0
- package/AISB/image/aisb.b3.self_evolving_rl.svg +16 -0
- package/AISB/image/aisb.b4.lm_reasoning.svg +16 -0
- package/AISB/image/aisb.b5.math_proof.svg +16 -0
- package/AISB/image/aisb.b6.research_process.svg +16 -0
- package/AISB/image/aisb.b7.multimodal_fusion.svg +16 -0
- package/AISB/image/aisb.b8.lifesci_drug.svg +16 -0
- package/AISB/image/aisb.b9.material_science.svg +16 -0
- package/README.md +196 -32
- package/bin/ds.js +924 -66
- package/docs/en/00_QUICK_START.md +195 -18
- package/docs/en/01_SETTINGS_REFERENCE.md +468 -96
- package/docs/en/02_START_RESEARCH_GUIDE.md +26 -5
- package/docs/en/03_QQ_CONNECTOR_GUIDE.md +14 -3
- package/docs/en/04_LINGZHU_CONNECTOR_GUIDE.md +2 -0
- package/docs/en/05_TUI_GUIDE.md +171 -2
- package/docs/en/07_MEMORY_AND_MCP.md +38 -2
- package/docs/en/09_DOCTOR.md +78 -7
- package/docs/en/10_WEIXIN_CONNECTOR_GUIDE.md +38 -1
- package/docs/en/11_LICENSE_AND_RISK.md +4 -0
- package/docs/en/12_GUIDED_WORKFLOW_TOUR.md +15 -0
- package/docs/en/14_PROMPT_SKILLS_AND_MCP_GUIDE.md +9 -0
- package/docs/en/15_CODEX_PROVIDER_SETUP.md +624 -180
- package/docs/en/16_TELEGRAM_CONNECTOR_GUIDE.md +14 -0
- package/docs/en/17_WHATSAPP_CONNECTOR_GUIDE.md +14 -0
- package/docs/en/18_FEISHU_CONNECTOR_GUIDE.md +14 -0
- package/docs/en/21_LOCAL_MODEL_BACKENDS_GUIDE.md +386 -0
- package/docs/en/22_BENCHSTORE_YAML_REFERENCE.md +469 -0
- package/docs/en/23_BENCHSTORE_GITHUB_RELEASES_SPEC.md +316 -0
- package/docs/en/24_CLAUDE_CODE_PROVIDER_SETUP.md +469 -0
- package/docs/en/25_OPENCODE_PROVIDER_SETUP.md +653 -0
- package/docs/en/26_CITATION_AND_ATTRIBUTION.md +119 -0
- package/docs/en/27_KIMI_CODE_PROVIDER_SETUP.md +180 -0
- package/docs/en/28_DISCORD_CONNECTOR_GUIDE.md +61 -0
- package/docs/en/29_SLACK_CONNECTOR_GUIDE.md +60 -0
- package/docs/en/30_SETTINGS_CONTROL_CENTER_GUIDE.md +371 -0
- package/docs/en/{19_LOCAL_BROWSER_AUTH.md → 31_LOCAL_BROWSER_AUTH.md} +1 -1
- package/docs/en/32_WINDOWS_WSL2_DEPLOYMENT_GUIDE.md +273 -0
- package/docs/en/33_WORKSPACE_EXPLORER_QA.md +121 -0
- package/docs/en/91_DEVELOPMENT.md +266 -0
- package/docs/en/99_ACKNOWLEDGEMENTS.md +24 -19
- package/docs/en/README.md +48 -7
- package/docs/images/admin/admin-connectors-health-en.png +0 -0
- package/docs/images/admin/admin-controllers-en.png +0 -0
- package/docs/images/admin/admin-diagnostics-en.png +0 -0
- package/docs/images/admin/admin-errors-en.png +0 -0
- package/docs/images/admin/admin-issues-en.png +0 -0
- package/docs/images/admin/admin-logs-en.png +0 -0
- package/docs/images/admin/admin-quest-detail-en.png +0 -0
- package/docs/images/admin/admin-quests-en.png +0 -0
- package/docs/images/admin/admin-repairs-en.png +0 -0
- package/docs/images/admin/admin-runtime-en.png +0 -0
- package/docs/images/admin/admin-search-en.png +0 -0
- package/docs/images/admin/admin-stats-en.png +0 -0
- package/docs/images/admin/admin-summary-en.png +0 -0
- package/docs/images/connectors/connector-discord-en.png +0 -0
- package/docs/images/connectors/connector-feishu-en.png +0 -0
- package/docs/images/connectors/connector-lingzhu-en.png +0 -0
- package/docs/images/connectors/connector-qq-en.png +0 -0
- package/docs/images/connectors/connector-slack-en.png +0 -0
- package/docs/images/connectors/connector-telegram-en.png +0 -0
- package/docs/images/connectors/connector-weixin-en.png +0 -0
- package/docs/images/connectors/connector-whatsapp-en.png +0 -0
- package/docs/images/settings/settings-baselines-en.png +0 -0
- package/docs/images/settings/settings-config-en.png +0 -0
- package/docs/images/settings/settings-connectors-overview-en.png +0 -0
- package/docs/images/settings/settings-deepxiv-en.png +0 -0
- package/docs/images/settings/settings-mcp-servers-en.png +0 -0
- package/docs/images/settings/settings-plugins-en.png +0 -0
- package/docs/images/settings/settings-runners-en.png +0 -0
- package/docs/zh/00_QUICK_START.md +142 -18
- package/docs/zh/01_SETTINGS_REFERENCE.md +219 -98
- package/docs/zh/02_START_RESEARCH_GUIDE.md +26 -5
- package/docs/zh/05_TUI_GUIDE.md +171 -2
- package/docs/zh/07_MEMORY_AND_MCP.md +29 -2
- package/docs/zh/09_DOCTOR.md +54 -8
- package/docs/zh/10_WEIXIN_CONNECTOR_GUIDE.md +24 -1
- package/docs/zh/11_LICENSE_AND_RISK.md +4 -0
- package/docs/zh/12_GUIDED_WORKFLOW_TOUR.md +15 -0
- package/docs/zh/14_PROMPT_SKILLS_AND_MCP_GUIDE.md +9 -0
- package/docs/zh/15_CODEX_PROVIDER_SETUP.md +552 -181
- package/docs/zh/21_LOCAL_MODEL_BACKENDS_GUIDE.md +384 -0
- package/docs/zh/22_BENCHSTORE_YAML_REFERENCE.md +459 -0
- package/docs/zh/23_BENCHSTORE_GITHUB_RELEASES_SPEC.md +287 -0
- package/docs/zh/23_CLAUDE_RUNNER_GUIDE.md +103 -0
- package/docs/zh/24_CLAUDE_CODE_PROVIDER_SETUP.md +460 -0
- package/docs/zh/25_OPENCODE_PROVIDER_SETUP.md +660 -0
- package/docs/zh/26_CITATION_AND_ATTRIBUTION.md +102 -0
- package/docs/zh/27_KIMI_CODE_PROVIDER_SETUP.md +51 -0
- package/docs/zh/{19_LOCAL_BROWSER_AUTH.md → 31_LOCAL_BROWSER_AUTH.md} +1 -1
- package/docs/zh/32_WINDOWS_WSL2_DEPLOYMENT_GUIDE.md +264 -0
- package/docs/zh/33_WORKSPACE_EXPLORER_QA.md +127 -0
- package/docs/zh/99_ACKNOWLEDGEMENTS.md +23 -19
- package/docs/zh/README.md +33 -7
- package/install.sh +168 -20
- package/package.json +5 -1
- package/pyproject.toml +2 -1
- package/src/deepscientist/__init__.py +1 -1
- package/src/deepscientist/acp/envelope.py +13 -0
- package/src/deepscientist/admin/__init__.py +3 -0
- package/src/deepscientist/admin/charts.py +681 -0
- package/src/deepscientist/admin/logs.py +119 -0
- package/src/deepscientist/admin/repairs.py +217 -0
- package/src/deepscientist/admin/service.py +1310 -0
- package/src/deepscientist/admin/system_info.py +700 -0
- package/src/deepscientist/admin/tasks.py +465 -0
- package/src/deepscientist/admin/tool_metrics.py +600 -0
- package/src/deepscientist/artifact/guidance.py +8 -4
- package/src/deepscientist/artifact/schemas.py +115 -0
- package/src/deepscientist/artifact/service.py +4268 -260
- package/src/deepscientist/bash_exec/monitor.py +30 -3
- package/src/deepscientist/bash_exec/service.py +134 -1
- package/src/deepscientist/benchstore/__init__.py +4 -0
- package/src/deepscientist/benchstore/prompt_builder.py +224 -0
- package/src/deepscientist/benchstore/service.py +1716 -0
- package/src/deepscientist/bridges/connectors.py +8 -2
- package/src/deepscientist/channels/weixin_ilink.py +8 -1
- package/src/deepscientist/cli.py +92 -17
- package/src/deepscientist/codex_cli_compat.py +187 -74
- package/src/deepscientist/config/models.py +82 -11
- package/src/deepscientist/config/service.py +1077 -93
- package/src/deepscientist/connector/weixin_support.py +48 -17
- package/src/deepscientist/daemon/api/handlers.py +827 -235
- package/src/deepscientist/daemon/api/router.py +81 -1
- package/src/deepscientist/daemon/app.py +1512 -85
- package/src/deepscientist/diagnostics/__init__.py +6 -0
- package/src/deepscientist/diagnostics/runner_failures.py +277 -0
- package/src/deepscientist/doctor.py +407 -56
- package/src/deepscientist/evidence_packets.py +590 -0
- package/src/deepscientist/home.py +52 -4
- package/src/deepscientist/kimi_cli_compat.py +50 -0
- package/src/deepscientist/latex_runtime.py +2 -2
- package/src/deepscientist/mcp/context.py +2 -0
- package/src/deepscientist/mcp/schemas.py +114 -0
- package/src/deepscientist/mcp/server.py +1566 -126
- package/src/deepscientist/memory/service.py +203 -16
- package/src/deepscientist/process_control.py +8 -1
- package/src/deepscientist/prompts/builder.py +850 -88
- package/src/deepscientist/quest/__init__.py +2 -2
- package/src/deepscientist/quest/layout.py +12 -1
- package/src/deepscientist/quest/node_traces.py +10 -0
- package/src/deepscientist/quest/service.py +1852 -161
- package/src/deepscientist/quest/stage_views.py +1 -1
- package/src/deepscientist/runners/__init__.py +18 -0
- package/src/deepscientist/runners/base.py +89 -1
- package/src/deepscientist/runners/builtins.py +13 -1
- package/src/deepscientist/runners/claude.py +391 -0
- package/src/deepscientist/runners/codex.py +480 -35
- package/src/deepscientist/runners/codex_telemetry.py +127 -0
- package/src/deepscientist/runners/kimi.py +334 -0
- package/src/deepscientist/runners/metadata.py +68 -0
- package/src/deepscientist/runners/opencode.py +414 -0
- package/src/deepscientist/runners/runtime_overrides.py +100 -0
- package/src/deepscientist/runners/simple_cli.py +538 -0
- package/src/deepscientist/runtime_storage.py +303 -0
- package/src/deepscientist/shared.py +80 -16
- package/src/deepscientist/skills/installer.py +37 -0
- package/src/deepscientist/skills/registry.py +2 -0
- package/src/deepscientist/tinytex.py +2 -2
- package/src/deepscientist/tui.py +10 -3
- package/src/prompts/benchstore/system.md +77 -0
- package/src/prompts/connectors/qq.md +33 -2
- package/src/prompts/connectors/weixin.md +208 -23
- package/src/prompts/contracts/admin_ops.md +74 -0
- package/src/prompts/contracts/admin_ops_knowledge.md +138 -0
- package/src/prompts/contracts/shared_interaction.md +5 -10
- package/src/prompts/start_setup/system.md +422 -0
- package/src/prompts/system.md +411 -304
- package/src/prompts/system_copilot.md +89 -0
- package/src/skills/analysis-campaign/SKILL.md +239 -578
- package/src/skills/analysis-campaign/references/artifact-flow-examples.md +102 -0
- package/src/skills/analysis-campaign/references/boundary-cases.md +98 -0
- package/src/skills/analysis-campaign/references/campaign-checklist-template.md +39 -24
- package/src/skills/analysis-campaign/references/campaign-design.md +26 -10
- package/src/skills/analysis-campaign/references/campaign-plan-template.md +53 -54
- package/src/skills/analysis-campaign/references/operational-guidance.md +97 -0
- package/src/skills/analysis-campaign/references/writing-facing-slice-examples.md +10 -20
- package/src/skills/baseline/SKILL.md +183 -461
- package/src/skills/baseline/references/artifact-flow-examples.md +106 -0
- package/src/skills/baseline/references/artifact-payload-examples.md +1 -1
- package/src/skills/baseline/references/baseline-checklist-template.md +27 -35
- package/src/skills/baseline/references/baseline-plan-template.md +37 -76
- package/src/skills/baseline/references/boundary-cases.md +86 -0
- package/src/skills/baseline/references/codebase-audit-checklist.md +2 -6
- package/src/skills/baseline/references/comparability-contract.md +7 -12
- package/src/skills/baseline/references/operational-guidance.md +56 -0
- package/src/skills/baseline/references/route-selection.md +5 -25
- package/src/skills/decision/SKILL.md +113 -306
- package/src/skills/decision/references/checkpoint-memory-template.md +47 -0
- package/src/skills/decision/references/operational-guidance.md +94 -0
- package/src/skills/decision/references/research-route-criteria.md +7 -8
- package/src/skills/decision/references/strategic-decision-template.md +13 -26
- package/src/skills/experiment/SKILL.md +132 -670
- package/src/skills/experiment/references/execution-playbook.md +374 -0
- package/src/skills/experiment/references/main-experiment-checklist-template.md +26 -2
- package/src/skills/experiment/references/main-experiment-plan-template.md +28 -17
- package/src/skills/experiment/references/operational-guidance.md +108 -0
- package/src/skills/finalize/SKILL.md +62 -0
- package/src/skills/finalize/references/checkpoint-memory-template.md +49 -0
- package/src/skills/finalize/references/resume-packet-template.md +7 -0
- package/src/skills/idea/SKILL.md +228 -15
- package/src/skills/idea/references/controlled-brainstorming-playbook.md +78 -0
- package/src/skills/idea/references/current-board-packet-template.md +61 -0
- package/src/skills/idea/references/high-value-idea-sourcing.md +119 -0
- package/src/skills/idea/references/idea-generation-playbook.md +21 -0
- package/src/skills/idea/references/idea-thinking-flow.md +6 -0
- package/src/skills/idea/references/literature-survey-template.md +3 -0
- package/src/skills/idea/references/objective-contract-template.md +54 -0
- package/src/skills/idea/references/outline-seeding-example.md +56 -0
- package/src/skills/idea/references/pre-idea-draft-template.md +105 -0
- package/src/skills/idea/references/related-work-playbook.md +75 -2
- package/src/skills/idea/references/research-history-playbook.md +114 -0
- package/src/skills/idea/references/selection-gate.md +58 -6
- package/src/skills/intake-audit/SKILL.md +43 -2
- package/src/skills/intake-audit/references/state-audit-template.md +10 -0
- package/src/skills/nature-data/SKILL.md +128 -0
- package/src/skills/nature-data/UPSTREAM_LICENSE.txt +21 -0
- package/src/skills/nature-data/agents/openai.yaml +4 -0
- package/src/skills/nature-data/references/chinese-author-alignment.md +84 -0
- package/src/skills/nature-data/references/fair-metadata-checklist.md +105 -0
- package/src/skills/nature-data/references/policy-principles.md +103 -0
- package/src/skills/nature-data/references/repository-and-identifiers.md +96 -0
- package/src/skills/nature-data/references/source-basis.md +54 -0
- package/src/skills/nature-data/references/statement-patterns.md +153 -0
- package/src/skills/nature-figure/SKILL.md +197 -0
- package/src/skills/nature-figure/UPSTREAM_LICENSE.txt +21 -0
- package/src/skills/nature-figure/agents/openai.yaml +4 -0
- package/src/skills/nature-figure/evals/evals.json +37 -0
- package/src/skills/nature-figure/references/api.md +428 -0
- package/src/skills/nature-figure/references/backend-selection.md +100 -0
- package/src/skills/nature-figure/references/chart-types.md +281 -0
- package/src/skills/nature-figure/references/common-patterns.md +349 -0
- package/src/skills/nature-figure/references/design-theory.md +436 -0
- package/src/skills/nature-figure/references/figure-contract.md +93 -0
- package/src/skills/nature-figure/references/nature-2026-observations.md +112 -0
- package/src/skills/nature-figure/references/qa-contract.md +119 -0
- package/src/skills/nature-figure/references/r-template-index.md +66 -0
- package/src/skills/nature-figure/references/r-workflow.md +161 -0
- package/src/skills/nature-figure/references/tutorials.md +250 -0
- package/src/skills/nature-paper2ppt/SKILL.md +507 -0
- package/src/skills/nature-paper2ppt/UPSTREAM_LICENSE.txt +21 -0
- package/src/skills/nature-paper2ppt/agents/openai.yaml +4 -0
- package/src/skills/nature-polishing/SKILL.md +385 -0
- package/src/skills/nature-polishing/UPSTREAM_LICENSE.txt +21 -0
- package/src/skills/nature-polishing/agents/openai.yaml +4 -0
- package/src/skills/nature-polishing/references/phrasebank-playbook.md +162 -0
- package/src/skills/nature-polishing/references/section-moves.md +240 -0
- package/src/skills/nature-polishing/references/style-guardrails.md +94 -0
- package/src/skills/nature-polishing/references/writing-strategy.md +148 -0
- package/src/skills/optimize/SKILL.md +177 -1568
- package/src/skills/optimize/references/brief-shaping-playbook.md +95 -0
- package/src/skills/optimize/references/candidate-board-template.md +13 -0
- package/src/skills/optimize/references/candidate-ranking-template.md +51 -0
- package/src/skills/optimize/references/codegen-route-playbook.md +50 -0
- package/src/skills/optimize/references/debug-response-template.md +29 -0
- package/src/skills/optimize/references/frontier-review-template.md +32 -0
- package/src/skills/optimize/references/fusion-playbook.md +36 -0
- package/src/skills/optimize/references/method-brief-template.md +73 -0
- package/src/skills/optimize/references/operational-guidance.md +621 -0
- package/src/skills/optimize/references/optimization-memory-template.md +30 -0
- package/src/skills/optimize/references/optimize-checklist-template.md +18 -0
- package/src/skills/optimize/references/plateau-response-playbook.md +28 -0
- package/src/skills/optimize/references/prompt-patterns.md +49 -0
- package/src/skills/paper-outline/SKILL.md +227 -0
- package/src/skills/paper-outline/references/outline-patterns.md +87 -0
- package/src/skills/paper-plot/SKILL.md +79 -0
- package/src/skills/paper-plot/agents/openai.yaml +4 -0
- package/src/skills/paper-plot/references/bar_grouped_hatch.md +96 -0
- package/src/skills/paper-plot/references/bar_paired_delta.md +72 -0
- package/src/skills/paper-plot/references/line_confidence_band.md +75 -0
- package/src/skills/paper-plot/references/line_loss_with_inset.md +65 -0
- package/src/skills/paper-plot/references/line_training_curve.md +44 -0
- package/src/skills/paper-plot/references/radar_dual_series.md +59 -0
- package/src/skills/paper-plot/references/scatter_broken_axis.md +59 -0
- package/src/skills/paper-plot/references/scatter_tsne_cluster.md +72 -0
- package/src/skills/paper-plot/scripts/bar_memevolve.py +109 -0
- package/src/skills/paper-plot/scripts/bar_spice.py +166 -0
- package/src/skills/paper-plot/scripts/line_aime.py +94 -0
- package/src/skills/paper-plot/scripts/line_loss_inset.py +157 -0
- package/src/skills/paper-plot/scripts/line_selfdistill.py +168 -0
- package/src/skills/paper-plot/scripts/radar_dora.py +151 -0
- package/src/skills/paper-plot/scripts/scatter_break.py +169 -0
- package/src/skills/paper-plot/scripts/scatter_tsne.py +133 -0
- package/src/skills/rebuttal/SKILL.md +9 -0
- package/src/skills/references/tool-usage-by-stage.md +438 -0
- package/src/skills/review/SKILL.md +105 -7
- package/src/skills/science/PROVENANCE.md +44 -0
- package/src/skills/science/SKILL.md +137 -0
- package/src/skills/science/references/artifact-science-tool.md +110 -0
- package/src/skills/science/references/claim-type-discipline.md +56 -0
- package/src/skills/science/references/domain-index.md +422 -0
- package/src/skills/science/references/hpc-via-bash-exec.md +42 -0
- package/src/skills/science/references/package-check-playbook.md +64 -0
- package/src/skills/science/references/package-index.min.json +3616 -0
- package/src/skills/science/references/packages/abinit.md +80 -0
- package/src/skills/science/references/packages/acts.md +73 -0
- package/src/skills/science/references/packages/aiida-core.md +80 -0
- package/src/skills/science/references/packages/alamode.md +80 -0
- package/src/skills/science/references/packages/amuse.md +88 -0
- package/src/skills/science/references/packages/anndata.md +88 -0
- package/src/skills/science/references/packages/arbor.md +80 -0
- package/src/skills/science/references/packages/arc.md +73 -0
- package/src/skills/science/references/packages/astropy.md +88 -0
- package/src/skills/science/references/packages/astroquery.md +88 -0
- package/src/skills/science/references/packages/atomate2.md +80 -0
- package/src/skills/science/references/packages/atomsmltr.md +73 -0
- package/src/skills/science/references/packages/awkward.md +73 -0
- package/src/skills/science/references/packages/batman.md +88 -0
- package/src/skills/science/references/packages/biopython.md +88 -0
- package/src/skills/science/references/packages/bloqade.md +73 -0
- package/src/skills/science/references/packages/brian2.md +73 -0
- package/src/skills/science/references/packages/bullet3.md +73 -0
- package/src/skills/science/references/packages/calculix.md +80 -0
- package/src/skills/science/references/packages/cantera.md +73 -0
- package/src/skills/science/references/packages/cavity-md-ipi.md +80 -0
- package/src/skills/science/references/packages/ccdproc.md +88 -0
- package/src/skills/science/references/packages/celerite2.md +88 -0
- package/src/skills/science/references/packages/cellrank.md +73 -0
- package/src/skills/science/references/packages/cesm.md +80 -0
- package/src/skills/science/references/packages/chemicals.md +73 -0
- package/src/skills/science/references/packages/chempy.md +73 -0
- package/src/skills/science/references/packages/cirq.md +73 -0
- package/src/skills/science/references/packages/coffea.md +73 -0
- package/src/skills/science/references/packages/cp2k.md +88 -0
- package/src/skills/science/references/packages/custodian.md +80 -0
- package/src/skills/science/references/packages/dart.md +73 -0
- package/src/skills/science/references/packages/datamol.md +88 -0
- package/src/skills/science/references/packages/dd4hep.md +73 -0
- package/src/skills/science/references/packages/dealii.md +80 -0
- package/src/skills/science/references/packages/deepchem.md +88 -0
- package/src/skills/science/references/packages/delphes.md +73 -0
- package/src/skills/science/references/packages/devito.md +80 -0
- package/src/skills/science/references/packages/dftb.md +88 -0
- package/src/skills/science/references/packages/dftd4.md +88 -0
- package/src/skills/science/references/packages/dftk-jl.md +80 -0
- package/src/skills/science/references/packages/dolfinx.md +80 -0
- package/src/skills/science/references/packages/drake.md +73 -0
- package/src/skills/science/references/packages/dumux.md +73 -0
- package/src/skills/science/references/packages/elk.md +80 -0
- package/src/skills/science/references/packages/elmerfem.md +80 -0
- package/src/skills/science/references/packages/enzo-e.md +88 -0
- package/src/skills/science/references/packages/espresso.md +80 -0
- package/src/skills/science/references/packages/exoplanet.md +88 -0
- package/src/skills/science/references/packages/fairroot.md +73 -0
- package/src/skills/science/references/packages/fbpic.md +80 -0
- package/src/skills/science/references/packages/fdtdbath-meep.md +80 -0
- package/src/skills/science/references/packages/geant4.md +73 -0
- package/src/skills/science/references/packages/geosx.md +80 -0
- package/src/skills/science/references/packages/gprmax.md +80 -0
- package/src/skills/science/references/packages/gromacs.md +80 -0
- package/src/skills/science/references/packages/gwaslab.md +73 -0
- package/src/skills/science/references/packages/gz-sim.md +73 -0
- package/src/skills/science/references/packages/hail.md +88 -0
- package/src/skills/science/references/packages/hiphive.md +80 -0
- package/src/skills/science/references/packages/hoomd-blue.md +80 -0
- package/src/skills/science/references/packages/itensor.md +73 -0
- package/src/skills/science/references/packages/itensors-jl.md +73 -0
- package/src/skills/science/references/packages/jdftx.md +73 -0
- package/src/skills/science/references/packages/jobflow.md +80 -0
- package/src/skills/science/references/packages/kadanoffbaym-jl.md +73 -0
- package/src/skills/science/references/packages/kite.md +80 -0
- package/src/skills/science/references/packages/kratos.md +80 -0
- package/src/skills/science/references/packages/kwant.md +73 -0
- package/src/skills/science/references/packages/lammps.md +80 -0
- package/src/skills/science/references/packages/lightkurve.md +88 -0
- package/src/skills/science/references/packages/limix.md +73 -0
- package/src/skills/science/references/packages/maxwelllink.md +80 -0
- package/src/skills/science/references/packages/mcdc.md +73 -0
- package/src/skills/science/references/packages/meep.md +80 -0
- package/src/skills/science/references/packages/mfem.md +80 -0
- package/src/skills/science/references/packages/mitgcm.md +73 -0
- package/src/skills/science/references/packages/modflow6.md +73 -0
- package/src/skills/science/references/packages/molecool.md +73 -0
- package/src/skills/science/references/packages/mom6.md +73 -0
- package/src/skills/science/references/packages/moose.md +80 -0
- package/src/skills/science/references/packages/mpas-model.md +73 -0
- package/src/skills/science/references/packages/mujoco.md +73 -0
- package/src/skills/science/references/packages/mumax3.md +73 -0
- package/src/skills/science/references/packages/nekrs.md +80 -0
- package/src/skills/science/references/packages/nessi.md +73 -0
- package/src/skills/science/references/packages/nest-simulator.md +73 -0
- package/src/skills/science/references/packages/netket.md +73 -0
- package/src/skills/science/references/packages/neuron.md +73 -0
- package/src/skills/science/references/packages/nextflow.md +88 -0
- package/src/skills/science/references/packages/nwchem.md +88 -0
- package/src/skills/science/references/packages/openbabel.md +88 -0
- package/src/skills/science/references/packages/openems.md +80 -0
- package/src/skills/science/references/packages/openff-toolkit.md +88 -0
- package/src/skills/science/references/packages/openfoam-dev.md +80 -0
- package/src/skills/science/references/packages/openmc.md +73 -0
- package/src/skills/science/references/packages/openmm.md +80 -0
- package/src/skills/science/references/packages/openmoc.md +73 -0
- package/src/skills/science/references/packages/openmx.md +80 -0
- package/src/skills/science/references/packages/opensees.md +80 -0
- package/src/skills/science/references/packages/opensn.md +80 -0
- package/src/skills/science/references/packages/opm-simulators.md +73 -0
- package/src/skills/science/references/packages/oqupy.md +73 -0
- package/src/skills/science/references/packages/packmol.md +80 -0
- package/src/skills/science/references/packages/palabos.md +80 -0
- package/src/skills/science/references/packages/parflow.md +80 -0
- package/src/skills/science/references/packages/pennylane.md +88 -0
- package/src/skills/science/references/packages/perceval.md +73 -0
- package/src/skills/science/references/packages/phono3py.md +73 -0
- package/src/skills/science/references/packages/phonopy.md +73 -0
- package/src/skills/science/references/packages/photutils.md +88 -0
- package/src/skills/science/references/packages/picongpu.md +80 -0
- package/src/skills/science/references/packages/plink-ng.md +88 -0
- package/src/skills/science/references/packages/precice.md +73 -0
- package/src/skills/science/references/packages/psc.md +80 -0
- package/src/skills/science/references/packages/psi4.md +88 -0
- package/src/skills/science/references/packages/pybinding.md +73 -0
- package/src/skills/science/references/packages/pyfr.md +80 -0
- package/src/skills/science/references/packages/pyhf.md +73 -0
- package/src/skills/science/references/packages/pyiron_base.md +80 -0
- package/src/skills/science/references/packages/pylcp.md +73 -0
- package/src/skills/science/references/packages/pylith.md +80 -0
- package/src/skills/science/references/packages/pynbody.md +88 -0
- package/src/skills/science/references/packages/pysam.md +88 -0
- package/src/skills/science/references/packages/pyscf.md +88 -0
- package/src/skills/science/references/packages/q-e.md +73 -0
- package/src/skills/science/references/packages/qibo.md +73 -0
- package/src/skills/science/references/packages/qiskit.md +73 -0
- package/src/skills/science/references/packages/quantica-jl.md +73 -0
- package/src/skills/science/references/packages/quantumoptics-jl.md +73 -0
- package/src/skills/science/references/packages/quimb.md +73 -0
- package/src/skills/science/references/packages/qulacs.md +73 -0
- package/src/skills/science/references/packages/qutip.md +73 -0
- package/src/skills/science/references/packages/rdkit.md +88 -0
- package/src/skills/science/references/packages/rmg-py.md +73 -0
- package/src/skills/science/references/packages/root.md +73 -0
- package/src/skills/science/references/packages/scanpy.md +88 -0
- package/src/skills/science/references/packages/scikit-allel.md +88 -0
- package/src/skills/science/references/packages/scikit-bio.md +88 -0
- package/src/skills/science/references/packages/scqubits.md +73 -0
- package/src/skills/science/references/packages/scuff-em.md +80 -0
- package/src/skills/science/references/packages/scvi-tools.md +73 -0
- package/src/skills/science/references/packages/seissol.md +73 -0
- package/src/skills/science/references/packages/sfepy.md +80 -0
- package/src/skills/science/references/packages/sisl.md +73 -0
- package/src/skills/science/references/packages/smilei.md +80 -0
- package/src/skills/science/references/packages/snakemake.md +88 -0
- package/src/skills/science/references/packages/specfem3d-globe.md +80 -0
- package/src/skills/science/references/packages/specutils.md +88 -0
- package/src/skills/science/references/packages/spglib.md +80 -0
- package/src/skills/science/references/packages/squidpy.md +88 -0
- package/src/skills/science/references/packages/starry.md +88 -0
- package/src/skills/science/references/packages/strawberryfields.md +73 -0
- package/src/skills/science/references/packages/su2.md +80 -0
- package/src/skills/science/references/packages/sunny-jl.md +73 -0
- package/src/skills/science/references/packages/sw4.md +73 -0
- package/src/skills/science/references/packages/swift.md +88 -0
- package/src/skills/science/references/packages/tdnegf.md +73 -0
- package/src/skills/science/references/packages/tenpy.md +73 -0
- package/src/skills/science/references/packages/thermo.md +73 -0
- package/src/skills/science/references/packages/tkwant.md +73 -0
- package/src/skills/science/references/packages/tvb-root.md +73 -0
- package/src/skills/science/references/packages/uproot5.md +73 -0
- package/src/skills/science/references/packages/vampire.md +80 -0
- package/src/skills/science/references/packages/wannier_tools.md +73 -0
- package/src/skills/science/references/packages/warpx.md +80 -0
- package/src/skills/science/references/packages/wrf.md +73 -0
- package/src/skills/science/references/packages/xtb.md +88 -0
- package/src/skills/science/references/packages/yt.md +73 -0
- package/src/skills/science/references/science-task-brief-template.md +71 -0
- package/src/skills/scout/SKILL.md +83 -425
- package/src/skills/scout/references/literature-scout-template.md +5 -24
- package/src/skills/scout/references/operational-guidance.md +191 -0
- package/src/skills/scout/references/paper-triage-playbook.md +11 -35
- package/src/skills/write/SKILL.md +744 -1246
- package/src/skills/write/references/experiments_analysis_patterns.md +129 -0
- package/src/skills/write/references/oral_package_patterns.md +252 -0
- package/src/skills/write/references/oral_writing_principles.md +291 -0
- package/src/skills/write/references/section_rewrite_checklist.md +234 -0
- package/src/tui/dist/app/AppContainer.js +1314 -27
- package/src/tui/dist/components/Composer.js +26 -1
- package/src/tui/dist/components/ConfigScreen.js +2 -1
- package/src/tui/dist/components/InputPrompt.js +25 -9
- package/src/tui/dist/components/MainContent.js +18 -3
- package/src/tui/dist/components/QuestScreen.js +3 -2
- package/src/tui/dist/components/UtilityScreen.js +37 -0
- package/src/tui/dist/hooks/useSafeInput.js +10 -0
- package/src/tui/dist/index.js +13 -1
- package/src/tui/dist/layouts/DefaultAppLayout.js +11 -8
- package/src/tui/dist/lib/api.js +89 -1
- package/src/tui/package.json +1 -1
- package/src/ui/dist/assets/{AnalysisPlugin-DnSm0GZn.js → AnalysisPlugin-CA94NGmI.js} +1 -1
- package/src/ui/dist/assets/CliPlugin-DHBzphZU.js +79 -0
- package/src/ui/dist/assets/CodeEditorPlugin-BOFwD2rn.js +2 -0
- package/src/ui/dist/assets/{CodeViewerPlugin-itb0tltR.js → CodeViewerPlugin-CqDpgjik.js} +4 -4
- package/src/ui/dist/assets/{DocViewerPlugin-DqKkiCI6.js → DocViewerPlugin-UDBgt8-4.js} +3 -3
- package/src/ui/dist/assets/GitCommitViewerPlugin-BmHtZ0bZ.js +6 -0
- package/src/ui/dist/assets/{GitDiffViewerPlugin-DxL2ezFG.js → GitDiffViewerPlugin-CAxjNorQ.js} +2 -2
- package/src/ui/dist/assets/{GitSnapshotViewer-B_RQm1YZ.js → GitSnapshotViewer-CweA6VON.js} +2 -2
- package/src/ui/dist/assets/{ImageViewerPlugin-tHqlXY3n.js → ImageViewerPlugin-C8wHGvGN.js} +5 -5
- package/src/ui/dist/assets/LabPlugin-COyyLUol.js +32 -0
- package/src/ui/dist/assets/{LatexPlugin-B495DTXC.js → LatexPlugin-BQjAaA5J.js} +4 -4
- package/src/ui/dist/assets/{MarkdownViewerPlugin-DG28-61B.js → MarkdownViewerPlugin-Dy1NE2dI.js} +3 -3
- package/src/ui/dist/assets/{MarketplacePlugin-BiOGT-Kj.js → MarketplacePlugin-DMIZtEJ2.js} +2 -2
- package/src/ui/dist/assets/NotebookEditor-CFHMq_Qt.js +91 -0
- package/src/ui/dist/assets/{NotebookEditor-CVsj8h_T.js → NotebookEditor-WFyd8Ybt.js} +23 -23
- package/src/ui/dist/assets/{PdfLoader-CASDQmxJ.js → PdfLoader-CLE5u5TS.js} +3 -3
- package/src/ui/dist/assets/{PdfMarkdownPlugin-BFhwoKsY.js → PdfMarkdownPlugin-_iNK_H83.js} +1 -1
- package/src/ui/dist/assets/PdfViewerPlugin-DgWsbInT.js +22 -0
- package/src/ui/dist/assets/SearchPlugin-DrZmn5iw.js +11 -0
- package/src/ui/dist/assets/{TextViewerPlugin-CB4DYfWO.js → TextViewerPlugin-D1-T3aC7.js} +4 -4
- package/src/ui/dist/assets/branding/runner-claude.svg +107 -0
- package/src/ui/dist/assets/branding/runner-codex.svg +10 -0
- package/src/ui/dist/assets/branding/runner-kimi.svg +14 -0
- package/src/ui/dist/assets/branding/runner-opencode.svg +7 -0
- package/src/ui/dist/assets/cli-store-CoZ-x5Ip.js +1 -0
- package/src/ui/dist/assets/{code-DLC6G24T.js → code-DbsmSd3Y.js} +1 -1
- package/src/ui/dist/assets/file-diff-panel-DsvyRz47.js +1 -0
- package/src/ui/dist/assets/{wrap-text-CwMn-iqb.js → file-jump-queue-DeQBikaw.js} +3 -3
- package/src/ui/dist/assets/{file-socket-Cu4Qln7Y.js → file-socket-DA5XIx88.js} +1 -1
- package/src/ui/dist/assets/fonts/ds-fonts.css +50 -4
- package/src/ui/dist/assets/images/deepxiv/register-guide.png +0 -0
- package/src/ui/dist/assets/index-39vY9LmZ.js +1 -0
- package/src/ui/dist/assets/{index-wQ7RIIRd.js → index-BsO46tJA.js} +1 -1
- package/src/ui/dist/assets/index-CHzJ2xtB.js +3530 -0
- package/src/ui/dist/assets/index-DH-zxoZ3.css +33 -0
- package/src/ui/dist/assets/{plugin-notebook-HbW2K-1c.js → plugin-notebook-JRhysCqj.js} +2 -2
- package/src/ui/dist/assets/{project-sync-CsX08Qno.js → project-sync-DPmWKmKD.js} +1 -1
- package/src/ui/dist/assets/{zoom-out-R-GWEhzS.js → zoom-out-DAukFWen.js} +3 -3
- package/src/ui/dist/index.html +3 -3
- package/src/skills/analysis-campaign/references/artifact-orchestration.md +0 -58
- package/src/skills/baseline/references/memory-playbook.md +0 -40
- package/src/skills/baseline/references/publishable-baseline-package.md +0 -30
- package/src/skills/write/references/outline-evidence-contract-example.md +0 -107
- package/src/skills/write/references/paper-experiment-matrix-template.md +0 -131
- package/src/skills/write/references/paper-section-playbook.md +0 -64
- package/src/skills/write/references/reviewer-first-writing.md +0 -64
- package/src/skills/write/references/revision-checklist.md +0 -70
- package/src/skills/write/references/section-contracts.md +0 -82
- package/src/skills/write/references/sentence-level-proofing.md +0 -49
- package/src/ui/dist/assets/AiManusChatView-COFACy7V.js +0 -204
- package/src/ui/dist/assets/CliPlugin-CvwCmDQ5.js +0 -109
- package/src/ui/dist/assets/CodeEditorPlugin-cOqSa0xq.js +0 -2
- package/src/ui/dist/assets/GitCommitViewerPlugin-DVgNHBCS.js +0 -1
- package/src/ui/dist/assets/LabCopilotPanel-ClMbq5Yu.js +0 -14
- package/src/ui/dist/assets/LabPlugin-L_SuE8ow.js +0 -22
- package/src/ui/dist/assets/NotebookEditor-C-4Kt1p9.js +0 -81
- package/src/ui/dist/assets/PdfViewerPlugin-DcOzU9vd.js +0 -17
- package/src/ui/dist/assets/SearchPlugin-CHj7M58O.js +0 -16
- package/src/ui/dist/assets/VNCViewer-CjlbyCB3.js +0 -11
- package/src/ui/dist/assets/bot-CFkZY-JP.js +0 -6
- package/src/ui/dist/assets/chevron-up-Dq5ofbht.js +0 -6
- package/src/ui/dist/assets/file-content-Dv4LoZec.js +0 -1
- package/src/ui/dist/assets/file-diff-panel-Denq-lC3.js +0 -1
- package/src/ui/dist/assets/file-jump-queue-DA-SdG__.js +0 -1
- package/src/ui/dist/assets/git-commit-horizontal-BUh6G52n.js +0 -6
- package/src/ui/dist/assets/image-B9HUUddG.js +0 -6
- package/src/ui/dist/assets/index-B2B1sg-M.js +0 -1
- package/src/ui/dist/assets/index-Cgla8biy.css +0 -33
- package/src/ui/dist/assets/index-DRyx7vAc.js +0 -1
- package/src/ui/dist/assets/index-Gbl53BNp.js +0 -2496
- package/src/ui/dist/assets/pdf-effect-queue-ZtnHFCAi.js +0 -6
- package/src/ui/dist/assets/popover-DL6h35vr.js +0 -1
- package/src/ui/dist/assets/select-DvmXt1yY.js +0 -11
- package/src/ui/dist/assets/sigma-7jpXazui.js +0 -6
- package/src/ui/dist/assets/trash-xA7kFt8i.js +0 -11
- package/src/ui/dist/assets/useCliAccess-DsMwDjOp.js +0 -1
- package/src/ui/dist/assets/useFileDiffOverlay-FuhcnKiw.js +0 -1
|
@@ -0,0 +1,163 @@
|
|
|
1
|
+
id: aisb.t3.074_lsvi
|
|
2
|
+
name: Least Squares Variational Inference
|
|
3
|
+
version: 0.1.0
|
|
4
|
+
one_line: Gradient-free variational inference via least-squares updates on tempered
|
|
5
|
+
log-target evaluations, supporting Gaussian BBVI and exponential-family posteriors
|
|
6
|
+
without gradient estimators.
|
|
7
|
+
task_description: 'This packaged benchmark implements LSVI (Least Squares Variational
|
|
8
|
+
Inference), a gradient-free, Monte Carlo-based scheme for variational inference
|
|
9
|
+
within exponential families. Instead of gradient-based optimization, LSVI performs
|
|
10
|
+
successive ordinary least squares regression on tempered log-target evaluations
|
|
11
|
+
under the variational approximation. Each iteration solves a fixed-point equation
|
|
12
|
+
via OLS, yielding a bias-corrected stochastic natural gradient descent step. The
|
|
13
|
+
approach avoids unstable gradient estimators required when gradients of log pi are
|
|
14
|
+
unavailable, such as for discrete distributions or likelihood-free inference. The
|
|
15
|
+
benchmark includes Gaussian variational family implementations that eliminate Fisher
|
|
16
|
+
information matrix inversion: O(d) complexity for mean-field Gaussians and O(d^3)
|
|
17
|
+
for full-covariance cases. Primary evaluation uses the Pima Indians diabetes logistic
|
|
18
|
+
regression task, measuring KL divergence to the true posterior via the kl_objective
|
|
19
|
+
metric.
|
|
20
|
+
|
|
21
|
+
'
|
|
22
|
+
task_mode: evaluation_driven
|
|
23
|
+
requires_execution: true
|
|
24
|
+
requires_paper: true
|
|
25
|
+
integrity_level: cas_plus_canary
|
|
26
|
+
snapshot_status: runnable
|
|
27
|
+
support_level: turnkey
|
|
28
|
+
time_band: 2-6h
|
|
29
|
+
cost_band: low
|
|
30
|
+
difficulty: medium
|
|
31
|
+
data_access: public
|
|
32
|
+
primary_outputs:
|
|
33
|
+
- kl_objective
|
|
34
|
+
- variational_inference_report
|
|
35
|
+
launch_profiles:
|
|
36
|
+
- id: gaussian_logreg
|
|
37
|
+
label: Gaussian Logistic Regression
|
|
38
|
+
description: 'Execute the packaged least-squares variational inference experiment
|
|
39
|
+
using Gaussian variational approximation on the Pima Indians diabetes binary classification
|
|
40
|
+
task. Runs 8 random seeds with 8000-step phase-1 and 1500-step phase-2 optimization.
|
|
41
|
+
Outputs KL divergence metrics and variational parameter trajectories.
|
|
42
|
+
|
|
43
|
+
'
|
|
44
|
+
dataset_download:
|
|
45
|
+
primary_method: bundled
|
|
46
|
+
sources:
|
|
47
|
+
- type: package
|
|
48
|
+
path: LSVI/
|
|
49
|
+
description: Benchmark code and experiments are bundled in the archive
|
|
50
|
+
notes:
|
|
51
|
+
- Pima Indians dataset is included in the package under experiments/logisticRegression/
|
|
52
|
+
- No external data fetching required
|
|
53
|
+
credential_requirements:
|
|
54
|
+
mode: none
|
|
55
|
+
items: []
|
|
56
|
+
notes:
|
|
57
|
+
- All data and code are self-contained in the package
|
|
58
|
+
resources:
|
|
59
|
+
minimum:
|
|
60
|
+
cpu_cores: 8
|
|
61
|
+
ram_gb: 16
|
|
62
|
+
disk_gb: 20
|
|
63
|
+
gpu_count: 0
|
|
64
|
+
gpu_vram_gb: 0
|
|
65
|
+
notes:
|
|
66
|
+
- CPU-only execution fully supported via JAX CPU backend
|
|
67
|
+
- 8-core CPU recommended for parallel seed execution
|
|
68
|
+
recommended:
|
|
69
|
+
cpu_cores: 16
|
|
70
|
+
ram_gb: 32
|
|
71
|
+
disk_gb: 50
|
|
72
|
+
gpu_count: 0
|
|
73
|
+
gpu_vram_gb: 0
|
|
74
|
+
notes:
|
|
75
|
+
- Additional cores reduce wall-clock time for multi-seed experiments
|
|
76
|
+
- GPU is optional; JAX supports GPU acceleration if available
|
|
77
|
+
environment:
|
|
78
|
+
python: '3.10'
|
|
79
|
+
cuda: null
|
|
80
|
+
pytorch: null
|
|
81
|
+
flash_attn: null
|
|
82
|
+
key_packages:
|
|
83
|
+
- jax>=0.4.0
|
|
84
|
+
- jaxlib
|
|
85
|
+
- numpy>=1.21
|
|
86
|
+
- scipy
|
|
87
|
+
notes:
|
|
88
|
+
- JAX is the primary computation library; no PyTorch dependency
|
|
89
|
+
- GPU support is optional via CUDA-enabled jaxlib
|
|
90
|
+
- CPU-only execution is the primary tested configuration
|
|
91
|
+
- See bundled requirements.txt or setup.py for full dependency list
|
|
92
|
+
risk_flags: []
|
|
93
|
+
risk_notes:
|
|
94
|
+
- No external API calls; fully offline benchmark
|
|
95
|
+
- CPU-bound execution eliminates GPU availability risk
|
|
96
|
+
- Long runtime (up to 6h) but low computational cost
|
|
97
|
+
recommended_when: 'Use this benchmark for evaluating probabilistic inference methods
|
|
98
|
+
that must operate without gradient access, including discrete variable models, likelihood-free
|
|
99
|
+
inference, and non-differentiable posteriors. The CPU-friendly execution profile
|
|
100
|
+
makes it suitable for resource-constrained environments or methodological research
|
|
101
|
+
on variational inference.
|
|
102
|
+
|
|
103
|
+
'
|
|
104
|
+
not_recommended_when: 'Do not use this benchmark for evaluating large-scale deep learning
|
|
105
|
+
methods, GPU-accelerated neural network training, or tasks requiring automatic differentiation
|
|
106
|
+
of the target density. It does not test gradient-based VI alternatives like reparameterization
|
|
107
|
+
tricks or score-function estimators.
|
|
108
|
+
|
|
109
|
+
'
|
|
110
|
+
paper:
|
|
111
|
+
title: Least squares variational inference
|
|
112
|
+
venue: NeurIPS
|
|
113
|
+
year: 2025
|
|
114
|
+
url: https://arxiv.org/abs/2502.18475
|
|
115
|
+
authors:
|
|
116
|
+
- Yvann Le Fay
|
|
117
|
+
- Nicolas Chopin
|
|
118
|
+
- Simon Barthelme
|
|
119
|
+
affiliation:
|
|
120
|
+
- ENSAE, CREST, IP Paris
|
|
121
|
+
- GIPSA-Lab, CNRS
|
|
122
|
+
download:
|
|
123
|
+
url: https://github.com/ResearAI/DeepScientist/releases/download/aisb-v0.0.1/aisb.t3.074_lsvi.zip
|
|
124
|
+
archive_type: zip
|
|
125
|
+
local_dir_name: paper-74-LSVI
|
|
126
|
+
provider: github_release
|
|
127
|
+
repo: ResearAI/DeepScientist
|
|
128
|
+
tag: aisb-v0.0.1
|
|
129
|
+
asset_name: aisb.t3.074_lsvi.zip
|
|
130
|
+
sha256: 2f33740ed8cefdcd2bfd419c0ad454037de523a1b5a515e8da465918cc54af7a
|
|
131
|
+
size_bytes: 71181
|
|
132
|
+
display:
|
|
133
|
+
palette_seed: cream-slate-gaussian
|
|
134
|
+
art_style: probabilistic-notebook
|
|
135
|
+
accent_priority: medium
|
|
136
|
+
image_path: ../image/074_aisb.t3.074_lsvi.jpg
|
|
137
|
+
capability_tags:
|
|
138
|
+
- variational_inference
|
|
139
|
+
- bayesian_inference
|
|
140
|
+
- gradient_free_optimization
|
|
141
|
+
- probabilistic_modeling
|
|
142
|
+
- research_code_optimization
|
|
143
|
+
aisb_direction: T3
|
|
144
|
+
track_fit:
|
|
145
|
+
- paper_track
|
|
146
|
+
- benchmark_track
|
|
147
|
+
code_anchors:
|
|
148
|
+
primary_executable:
|
|
149
|
+
path: LSVI/experiments/logisticRegression/pima_logistic_regression/gaussian.py
|
|
150
|
+
description: Gaussian variational inference experiment for Pima logistic regression
|
|
151
|
+
with BBVI baseline
|
|
152
|
+
variational_modules:
|
|
153
|
+
path: LSVI/variational/
|
|
154
|
+
description: Core variational inference implementations including LSVI, Laplace
|
|
155
|
+
approximation, and exponential family distributions
|
|
156
|
+
metric_contract:
|
|
157
|
+
primary_metric: kl_objective
|
|
158
|
+
backing: LSVI/experiments/logisticRegression/pima_logistic_regression/gaussian.py
|
|
159
|
+
provenance: code-backed
|
|
160
|
+
caveats:
|
|
161
|
+
- No benchmark execution was performed during this packaging pass
|
|
162
|
+
- Runtime metric values require validation before publication
|
|
163
|
+
- Top-level README is absent in the current snapshot
|
|
@@ -0,0 +1,129 @@
|
|
|
1
|
+
id: aisb.t3.074_lsvi
|
|
2
|
+
name: Least Squares Variational Inference
|
|
3
|
+
version: 0.1.0
|
|
4
|
+
one_line: 通过对温度化对数目标评估做最小二乘更新实现无梯度变分推断,支持高斯 BBVI 与指数族后验,无需梯度估计器。
|
|
5
|
+
task_description: 该基准封装了 LSVI(最小二乘变分推断),一种在指数族中进行变分推断的无梯度蒙特卡洛方法。LSVI 不做梯度优化,而是在变分近似分布下对温度化对数目标进行连续 OLS 回归。每次迭代通过 OLS 求解不动点方程,得到偏差校正的随机自然梯度下降步。该方法适用于无法获得 log pi 梯度的场景(如离散分布或无似然推断),可避免不稳定梯度估计器。基准包含无需 Fisher 信息矩阵求逆的高斯变分族实现:均值场 O(d),全协方差 O(d^3)。主要评测任务为 Pima Indians 糖尿病逻辑回归,使用 kl_objective 衡量与真实后验的 KL 散度。
|
|
6
|
+
task_mode: evaluation_driven
|
|
7
|
+
requires_execution: true
|
|
8
|
+
requires_paper: true
|
|
9
|
+
integrity_level: cas_plus_canary
|
|
10
|
+
snapshot_status: runnable
|
|
11
|
+
support_level: turnkey
|
|
12
|
+
time_band: 2-6h
|
|
13
|
+
cost_band: low
|
|
14
|
+
difficulty: medium
|
|
15
|
+
data_access: public
|
|
16
|
+
primary_outputs:
|
|
17
|
+
- kl_objective
|
|
18
|
+
- variational_inference_report
|
|
19
|
+
launch_profiles:
|
|
20
|
+
- id: gaussian_logreg
|
|
21
|
+
label: 高斯逻辑回归
|
|
22
|
+
description: 在 Pima Indians 糖尿病二分类任务上运行封装的最小二乘变分推断实验。使用 8 个随机种子,阶段一 8000 步、阶段二 1500 步优化,输出 KL 散度与变分参数轨迹。
|
|
23
|
+
dataset_download:
|
|
24
|
+
primary_method: bundled
|
|
25
|
+
sources:
|
|
26
|
+
- type: package
|
|
27
|
+
path: LSVI/
|
|
28
|
+
description: Benchmark code and experiments are bundled in the archive
|
|
29
|
+
notes:
|
|
30
|
+
- Pima Indians dataset is included in the package under experiments/logisticRegression/
|
|
31
|
+
- No external data fetching required
|
|
32
|
+
credential_requirements:
|
|
33
|
+
mode: none
|
|
34
|
+
items: []
|
|
35
|
+
notes:
|
|
36
|
+
- All data and code are self-contained in the package
|
|
37
|
+
resources:
|
|
38
|
+
minimum:
|
|
39
|
+
cpu_cores: 8
|
|
40
|
+
ram_gb: 16
|
|
41
|
+
disk_gb: 20
|
|
42
|
+
gpu_count: 0
|
|
43
|
+
gpu_vram_gb: 0
|
|
44
|
+
notes:
|
|
45
|
+
- CPU-only execution fully supported via JAX CPU backend
|
|
46
|
+
- 8-core CPU recommended for parallel seed execution
|
|
47
|
+
recommended:
|
|
48
|
+
cpu_cores: 16
|
|
49
|
+
ram_gb: 32
|
|
50
|
+
disk_gb: 50
|
|
51
|
+
gpu_count: 0
|
|
52
|
+
gpu_vram_gb: 0
|
|
53
|
+
notes:
|
|
54
|
+
- Additional cores reduce wall-clock time for multi-seed experiments
|
|
55
|
+
- GPU is optional; JAX supports GPU acceleration if available
|
|
56
|
+
environment:
|
|
57
|
+
python: '3.10'
|
|
58
|
+
cuda: null
|
|
59
|
+
pytorch: null
|
|
60
|
+
flash_attn: null
|
|
61
|
+
key_packages:
|
|
62
|
+
- jax>=0.4.0
|
|
63
|
+
- jaxlib
|
|
64
|
+
- numpy>=1.21
|
|
65
|
+
- scipy
|
|
66
|
+
notes:
|
|
67
|
+
- JAX is the primary computation library; no PyTorch dependency
|
|
68
|
+
- GPU support is optional via CUDA-enabled jaxlib
|
|
69
|
+
- CPU-only execution is the primary tested configuration
|
|
70
|
+
- See bundled requirements.txt or setup.py for full dependency list
|
|
71
|
+
risk_flags: []
|
|
72
|
+
risk_notes:
|
|
73
|
+
- No external API calls; fully offline benchmark
|
|
74
|
+
- CPU-bound execution eliminates GPU availability risk
|
|
75
|
+
- Long runtime (up to 6h) but low computational cost
|
|
76
|
+
recommended_when: 当你需要评估在无梯度条件下工作的概率推断方法时使用本基准,包括离散变量模型、无似然推断与不可微后验。其 CPU 友好配置也适合资源受限环境中的变分推断研究。
|
|
77
|
+
not_recommended_when: 不适用于评估大规模深度学习、GPU 加速神经网络训练,或需要目标密度自动微分的任务。它也不覆盖重参数化技巧或 score-function 估计等梯度型 VI 方案。
|
|
78
|
+
paper:
|
|
79
|
+
title: Least squares variational inference
|
|
80
|
+
venue: NeurIPS
|
|
81
|
+
year: 2025
|
|
82
|
+
url: https://arxiv.org/abs/2502.18475
|
|
83
|
+
authors:
|
|
84
|
+
- Yvann Le Fay
|
|
85
|
+
- Nicolas Chopin
|
|
86
|
+
- Simon Barthelme
|
|
87
|
+
affiliation:
|
|
88
|
+
- ENSAE, CREST, IP Paris
|
|
89
|
+
- GIPSA-Lab, CNRS
|
|
90
|
+
download:
|
|
91
|
+
url: https://github.com/ResearAI/DeepScientist/releases/download/aisb-v0.0.1/aisb.t3.074_lsvi.zip
|
|
92
|
+
archive_type: zip
|
|
93
|
+
local_dir_name: paper-74-LSVI
|
|
94
|
+
provider: github_release
|
|
95
|
+
repo: ResearAI/DeepScientist
|
|
96
|
+
tag: aisb-v0.0.1
|
|
97
|
+
asset_name: aisb.t3.074_lsvi.zip
|
|
98
|
+
sha256: 2f33740ed8cefdcd2bfd419c0ad454037de523a1b5a515e8da465918cc54af7a
|
|
99
|
+
size_bytes: 71181
|
|
100
|
+
display:
|
|
101
|
+
palette_seed: cream-slate-gaussian
|
|
102
|
+
art_style: probabilistic-notebook
|
|
103
|
+
accent_priority: medium
|
|
104
|
+
image_path: ../image/074_aisb.t3.074_lsvi.jpg
|
|
105
|
+
capability_tags:
|
|
106
|
+
- variational_inference
|
|
107
|
+
- bayesian_inference
|
|
108
|
+
- gradient_free_optimization
|
|
109
|
+
- probabilistic_modeling
|
|
110
|
+
- research_code_optimization
|
|
111
|
+
aisb_direction: T3
|
|
112
|
+
track_fit:
|
|
113
|
+
- paper_track
|
|
114
|
+
- benchmark_track
|
|
115
|
+
code_anchors:
|
|
116
|
+
primary_executable:
|
|
117
|
+
path: LSVI/experiments/logisticRegression/pima_logistic_regression/gaussian.py
|
|
118
|
+
description: Gaussian variational inference experiment for Pima logistic regression with BBVI baseline
|
|
119
|
+
variational_modules:
|
|
120
|
+
path: LSVI/variational/
|
|
121
|
+
description: Core variational inference implementations including LSVI, Laplace approximation, and exponential family distributions
|
|
122
|
+
metric_contract:
|
|
123
|
+
primary_metric: kl_objective
|
|
124
|
+
backing: LSVI/experiments/logisticRegression/pima_logistic_regression/gaussian.py
|
|
125
|
+
provenance: code-backed
|
|
126
|
+
caveats:
|
|
127
|
+
- No benchmark execution was performed during this packaging pass
|
|
128
|
+
- Runtime metric values require validation before publication
|
|
129
|
+
- Top-level README is absent in the current snapshot
|
|
@@ -0,0 +1,201 @@
|
|
|
1
|
+
id: aisb.t3.075_treeslicedentropy
|
|
2
|
+
name: Tree-Sliced Entropy Partial Transport
|
|
3
|
+
version: 0.1.0
|
|
4
|
+
one_line: GPU-accelerated unbalanced partial transport via tree-sliced entropy for
|
|
5
|
+
point clouds, image generation, and image-to-image translation.
|
|
6
|
+
task_description: 'This packaged benchmark covers PartialTSW (Partial Tree-Sliced
|
|
7
|
+
Wasserstein), an extension of Tree-Sliced Wasserstein distances to unbalanced/partial
|
|
8
|
+
transport settings with closed-form formulations suitable for dynamic-support distributions
|
|
9
|
+
in generative modeling. The task requires selecting a concrete experiment family
|
|
10
|
+
(point cloud gradient flow, image generation with JAX/diffusers, or image-to-image
|
|
11
|
+
translation) and running the corresponding transport objective or ablation sweep.
|
|
12
|
+
Evaluation focuses on convergence quality (relative_bias_pct), runtime performance
|
|
13
|
+
(mean_time_s), and stability (coefficient_of_variation) rather than internal optimizer
|
|
14
|
+
accuracy targets. The benchmark is code-backed by three executable anchors: convergence
|
|
15
|
+
analysis (`analysis/convergence/simple_convergence.py`), runtime benchmarking varying
|
|
16
|
+
sample count (`analysis/runtime_plot/runtime_plot_compare_n_partial.py`), and runtime
|
|
17
|
+
benchmarking varying dimensionality (`analysis/runtime_plot/runtime_plot_compare_d_partial.py`).
|
|
18
|
+
|
|
19
|
+
'
|
|
20
|
+
task_mode: experiment_driven
|
|
21
|
+
requires_execution: true
|
|
22
|
+
requires_paper: true
|
|
23
|
+
integrity_level: cas_plus_canary
|
|
24
|
+
snapshot_status: external_eval_required
|
|
25
|
+
support_level: recovery
|
|
26
|
+
time_band: 2-4d
|
|
27
|
+
cost_band: high
|
|
28
|
+
difficulty: hard
|
|
29
|
+
data_access: public
|
|
30
|
+
primary_outputs:
|
|
31
|
+
- relative_bias_pct
|
|
32
|
+
- mean_time_s
|
|
33
|
+
- coefficient_of_variation
|
|
34
|
+
launch_profiles:
|
|
35
|
+
- id: convergence_eval
|
|
36
|
+
label: Convergence Evaluation
|
|
37
|
+
description: 'Run `analysis/convergence/simple_convergence.py` to assess estimator
|
|
38
|
+
bias and stability across varying tree counts (L) and lines per tree (k). Uses
|
|
39
|
+
PyTorch with GPU acceleration. Outputs relative bias percentage and coefficient
|
|
40
|
+
of variation per configuration.
|
|
41
|
+
|
|
42
|
+
'
|
|
43
|
+
- id: runtime_n_scaling
|
|
44
|
+
label: Runtime Scaling (Sample Count)
|
|
45
|
+
description: 'Run `analysis/runtime_plot/runtime_plot_compare_n_partial.py` to benchmark
|
|
46
|
+
runtime and GPU memory across sample sizes N ∈ [10², 10⁵]. Compares PartialTSW
|
|
47
|
+
against UOT baselines (sopt, spot, pawl, sliced_unbalanced_ot). Includes warm-up
|
|
48
|
+
runs for stable timing.
|
|
49
|
+
|
|
50
|
+
'
|
|
51
|
+
- id: runtime_d_scaling
|
|
52
|
+
label: Runtime Scaling (Dimension)
|
|
53
|
+
description: 'Run `analysis/runtime_plot/runtime_plot_compare_d_partial.py` to benchmark
|
|
54
|
+
runtime and GPU memory across dimensions d ∈ [1, 2048] with fixed N=10⁴. Compares
|
|
55
|
+
PartialTSW against UOT baselines. Includes warm-up runs for stable timing.
|
|
56
|
+
|
|
57
|
+
'
|
|
58
|
+
- id: experiment_family
|
|
59
|
+
label: Experiment Family Workflow
|
|
60
|
+
description: 'Select and execute one packaged experiment family: point_cloud (gradient
|
|
61
|
+
flow), image_gen (JAX/diffusers ablation sweep across multiple GPUs), or img2img
|
|
62
|
+
(image-to-image translation with class imbalance handling). Each family has distinct
|
|
63
|
+
data requirements and runtime profiles.
|
|
64
|
+
|
|
65
|
+
'
|
|
66
|
+
dataset_download:
|
|
67
|
+
primary_method: mixed
|
|
68
|
+
sources:
|
|
69
|
+
- torchvision (auto-download for MNIST-based experiments)
|
|
70
|
+
- manual (pretrained checkpoints for image generation, assets for img2img)
|
|
71
|
+
notes:
|
|
72
|
+
- Convergence and runtime eval scripts use synthetic Gaussian data and require no
|
|
73
|
+
external datasets.
|
|
74
|
+
- Image generation experiments may auto-download simple datasets through torchvision.
|
|
75
|
+
- Image-to-image translation and some ablation routes require manual asset preparation
|
|
76
|
+
or pretrained checkpoints before evaluation.
|
|
77
|
+
- Treat dataset setup as experiment-family specific; there is no universal dataset
|
|
78
|
+
route.
|
|
79
|
+
credential_requirements:
|
|
80
|
+
mode: none
|
|
81
|
+
items: []
|
|
82
|
+
notes:
|
|
83
|
+
- No explicit API or dataset credential variables were detected in the shipped source
|
|
84
|
+
snapshot.
|
|
85
|
+
- Image generation sweep uses explicit GPU slot scheduling (not cloud credential-based).
|
|
86
|
+
resources:
|
|
87
|
+
minimum:
|
|
88
|
+
cpu_cores: 16
|
|
89
|
+
ram_gb: 64
|
|
90
|
+
disk_gb: 150
|
|
91
|
+
gpu_count: 1
|
|
92
|
+
gpu_vram_gb: 24
|
|
93
|
+
notes: GPU required for meaningful runtime benchmarks; CPU-only execution is impractical
|
|
94
|
+
for N≥10⁴ or d≥64 configurations.
|
|
95
|
+
recommended:
|
|
96
|
+
cpu_cores: 32
|
|
97
|
+
ram_gb: 128
|
|
98
|
+
disk_gb: 300
|
|
99
|
+
gpu_count: 1
|
|
100
|
+
gpu_vram_gb: 48
|
|
101
|
+
notes: '48 GB VRAM accommodates full dimension sweep (up to d=2048) and larger
|
|
102
|
+
sample counts. Image generation ablation grid benefits from additional GPU slots
|
|
103
|
+
if available.
|
|
104
|
+
|
|
105
|
+
'
|
|
106
|
+
environment:
|
|
107
|
+
python: '3.11'
|
|
108
|
+
cuda: '11.8'
|
|
109
|
+
pytorch: 2.1.0
|
|
110
|
+
flash_attn: null
|
|
111
|
+
key_packages:
|
|
112
|
+
- jax==0.4.23
|
|
113
|
+
- jaxlib==0.4.23
|
|
114
|
+
- transformers==4.51.3
|
|
115
|
+
- diffusers==0.33.1
|
|
116
|
+
- torch>=2.1.0
|
|
117
|
+
- ot (POT library for baseline comparisons)
|
|
118
|
+
- tqdm
|
|
119
|
+
- matplotlib
|
|
120
|
+
- pandas
|
|
121
|
+
- numpy
|
|
122
|
+
notes:
|
|
123
|
+
- The packaged repository mixes PyTorch (analysis scripts), JAX/jaxlib (image generation),
|
|
124
|
+
and diffusion-style experiment routes rather than one narrow runtime profile.
|
|
125
|
+
- Analysis scripts default to CUDA with `torch.device('cuda' if torch.cuda.is_available()
|
|
126
|
+
else 'cpu')`.
|
|
127
|
+
- Image generation sweep script (`experiments/image_gen/exp.sh`) schedules 72 jobs
|
|
128
|
+
round-robin across allocated GPU slots; wall-clock time scales with GPU count.
|
|
129
|
+
- Baseline comparisons in runtime benchmarks import sopt, spot, pawl, sliced_unbalanced_ot,
|
|
130
|
+
and unbalanced_sliced_ot from the bundled baselines module.
|
|
131
|
+
risk_flags:
|
|
132
|
+
- route_caveat
|
|
133
|
+
- multi_route_experiment_family
|
|
134
|
+
- mixed_runtime_environment
|
|
135
|
+
- multi_gpu_scheduling_dependent
|
|
136
|
+
risk_notes:
|
|
137
|
+
- The packaged repository is structurally complete, but the optimizer target is not
|
|
138
|
+
one root command; point-cloud, image-generation, image-to-image, and analysis routes
|
|
139
|
+
differ materially in setup and execution.
|
|
140
|
+
- The packaged `experiments/image_gen/exp.sh` schedules 72 jobs round-robin across
|
|
141
|
+
the listed GPUs, so a full ablation sweep on one GPU is naturally multi-day.
|
|
142
|
+
- The runtime environment mixes PyTorch (convergence, runtime analysis), JAX/jaxlib
|
|
143
|
+
(image generation), and diffusion libraries; ensure both CUDA toolchains are compatible.
|
|
144
|
+
- Some subroutes can auto-download simple datasets such as MNIST, while others require
|
|
145
|
+
manual assets or pretrained checkpoints before evaluation.
|
|
146
|
+
- Convergence eval uses synthetic Gaussian data only; generative downstream quality
|
|
147
|
+
must be evaluated separately via experiment family routes.
|
|
148
|
+
recommended_when: 'Use this benchmark when you need a geometry-heavy optimal transport
|
|
149
|
+
benchmark with support for unbalanced measures, are prepared to explicitly select
|
|
150
|
+
one experiment family, and have GPU infrastructure suitable for multi-day ablation
|
|
151
|
+
sweeps. Ideal for comparing partial transport solvers on convergence bias, runtime
|
|
152
|
+
scaling, or generative applications with class imbalance.
|
|
153
|
+
|
|
154
|
+
'
|
|
155
|
+
not_recommended_when: 'Do not use this benchmark if you require a single one-command
|
|
156
|
+
execution, a CPU-first workflow, a single compact dataset with no experiment branching,
|
|
157
|
+
or pre-computed metrics without execution. Not suitable for environments without
|
|
158
|
+
CUDA-capable GPUs.
|
|
159
|
+
|
|
160
|
+
'
|
|
161
|
+
paper:
|
|
162
|
+
title: Tree-Sliced Entropy Partial Transport
|
|
163
|
+
venue: NeurIPS 2025
|
|
164
|
+
year: 2025
|
|
165
|
+
url: https://openreview.net/forum?id=41ZbysfW4h
|
|
166
|
+
authors:
|
|
167
|
+
- Viet-Hoang Tran (National University of Singapore)
|
|
168
|
+
- Thanh Tran (VinUniversity)
|
|
169
|
+
- Thanh Chu (National University of Singapore)
|
|
170
|
+
- Tam Le (Institute of Statistical Mathematics)
|
|
171
|
+
- Tan M. Nguyen (National University of Singapore)
|
|
172
|
+
download:
|
|
173
|
+
url: https://github.com/ResearAI/DeepScientist/releases/download/aisb-v0.0.1/aisb.t3.075_treeslicedentropy.zip
|
|
174
|
+
archive_type: zip
|
|
175
|
+
local_dir_name: paper-75-TreeSlicedEntropy
|
|
176
|
+
provider: github_release
|
|
177
|
+
repo: ResearAI/DeepScientist
|
|
178
|
+
tag: aisb-v0.0.1
|
|
179
|
+
asset_name: aisb.t3.075_treeslicedentropy.zip
|
|
180
|
+
sha256: c73a8da6a3b04ef4a24eb1345993f985e84234db16636906626f07cb762fa33c
|
|
181
|
+
size_bytes: 774639
|
|
182
|
+
display:
|
|
183
|
+
palette_seed: jade-bone-transport
|
|
184
|
+
art_style: geometric-minimal
|
|
185
|
+
accent_priority: high
|
|
186
|
+
image_path: ../../../AISB/image/075_aisb.t3.075_treeslicedentropy.jpg
|
|
187
|
+
capability_tags:
|
|
188
|
+
- optimal_transport
|
|
189
|
+
- tree_sliced_wasserstein
|
|
190
|
+
- partial_transport
|
|
191
|
+
- unbalanced_measures
|
|
192
|
+
- generative_modeling
|
|
193
|
+
- probabilistic_geometry
|
|
194
|
+
- scientific_ml
|
|
195
|
+
- research_code_optimization
|
|
196
|
+
aisb_direction: T3
|
|
197
|
+
track_fit:
|
|
198
|
+
- paper_track
|
|
199
|
+
- benchmark_track
|
|
200
|
+
commercial:
|
|
201
|
+
annual_fee: null
|
|
@@ -0,0 +1,148 @@
|
|
|
1
|
+
id: aisb.t3.075_treeslicedentropy
|
|
2
|
+
name: Tree-Sliced Entropy Partial Transport
|
|
3
|
+
version: 0.1.0
|
|
4
|
+
one_line: 基于树切片熵的 GPU 加速非平衡部分传输方法,覆盖点云、图像生成与图像到图像转换。
|
|
5
|
+
task_description: 该基准覆盖 PartialTSW(部分树切片 Wasserstein),将 Tree-Sliced Wasserstein 扩展到非平衡/部分传输设置,并给出适用于生成建模中动态支撑分布的闭式形式。任务要求选择具体实验族(点云梯度流、JAX/diffusers 图像生成、或图像到图像转换)并运行对应目标或消融。评估聚焦收敛质量(relative_bias_pct)、运行性能(mean_time_s)与稳定性(coefficient_of_variation),而非内部优化器精度目标。代码锚点包括三类可执行脚本:收敛分析、按样本数的运行时基准、按维度的运行时基准。
|
|
6
|
+
task_mode: experiment_driven
|
|
7
|
+
requires_execution: true
|
|
8
|
+
requires_paper: true
|
|
9
|
+
integrity_level: cas_plus_canary
|
|
10
|
+
snapshot_status: external_eval_required
|
|
11
|
+
support_level: recovery
|
|
12
|
+
time_band: 2-4d
|
|
13
|
+
cost_band: high
|
|
14
|
+
difficulty: hard
|
|
15
|
+
data_access: public
|
|
16
|
+
primary_outputs:
|
|
17
|
+
- relative_bias_pct
|
|
18
|
+
- mean_time_s
|
|
19
|
+
- coefficient_of_variation
|
|
20
|
+
launch_profiles:
|
|
21
|
+
- id: convergence_eval
|
|
22
|
+
label: Convergence Evaluation
|
|
23
|
+
description: 'Run `analysis/convergence/simple_convergence.py` to assess estimator bias and stability across varying tree counts (L) and lines per tree (k). Uses PyTorch with GPU acceleration. Outputs relative bias percentage and coefficient of variation per configuration.
|
|
24
|
+
|
|
25
|
+
'
|
|
26
|
+
- id: runtime_n_scaling
|
|
27
|
+
label: Runtime Scaling (Sample Count)
|
|
28
|
+
description: 'Run `analysis/runtime_plot/runtime_plot_compare_n_partial.py` to benchmark runtime and GPU memory across sample sizes N ∈ [10², 10⁵]. Compares PartialTSW against UOT baselines (sopt, spot, pawl, sliced_unbalanced_ot). Includes warm-up runs for stable timing.
|
|
29
|
+
|
|
30
|
+
'
|
|
31
|
+
- id: runtime_d_scaling
|
|
32
|
+
label: Runtime Scaling (Dimension)
|
|
33
|
+
description: 'Run `analysis/runtime_plot/runtime_plot_compare_d_partial.py` to benchmark runtime and GPU memory across dimensions d ∈ [1, 2048] with fixed N=10⁴. Compares PartialTSW against UOT baselines. Includes warm-up runs for stable timing.
|
|
34
|
+
|
|
35
|
+
'
|
|
36
|
+
- id: experiment_family
|
|
37
|
+
label: Experiment Family Workflow
|
|
38
|
+
description: 'Select and execute one packaged experiment family: point_cloud (gradient flow), image_gen (JAX/diffusers ablation sweep across multiple GPUs), or img2img (image-to-image translation with class imbalance handling). Each family has distinct data requirements and runtime profiles.
|
|
39
|
+
|
|
40
|
+
'
|
|
41
|
+
dataset_download:
|
|
42
|
+
primary_method: mixed
|
|
43
|
+
sources:
|
|
44
|
+
- torchvision (auto-download for MNIST-based experiments)
|
|
45
|
+
- manual (pretrained checkpoints for image generation, assets for img2img)
|
|
46
|
+
notes:
|
|
47
|
+
- Convergence and runtime eval scripts use synthetic Gaussian data and require no external datasets.
|
|
48
|
+
- Image generation experiments may auto-download simple datasets through torchvision.
|
|
49
|
+
- Image-to-image translation and some ablation routes require manual asset preparation or pretrained checkpoints before evaluation.
|
|
50
|
+
- Treat dataset setup as experiment-family specific; there is no universal dataset route.
|
|
51
|
+
credential_requirements:
|
|
52
|
+
mode: none
|
|
53
|
+
items: []
|
|
54
|
+
notes:
|
|
55
|
+
- No explicit API or dataset credential variables were detected in the shipped source snapshot.
|
|
56
|
+
- Image generation sweep uses explicit GPU slot scheduling (not cloud credential-based).
|
|
57
|
+
resources:
|
|
58
|
+
minimum:
|
|
59
|
+
cpu_cores: 16
|
|
60
|
+
ram_gb: 64
|
|
61
|
+
disk_gb: 150
|
|
62
|
+
gpu_count: 1
|
|
63
|
+
gpu_vram_gb: 24
|
|
64
|
+
notes: GPU required for meaningful runtime benchmarks; CPU-only execution is impractical for N≥10⁴ or d≥64 configurations.
|
|
65
|
+
recommended:
|
|
66
|
+
cpu_cores: 32
|
|
67
|
+
ram_gb: 128
|
|
68
|
+
disk_gb: 300
|
|
69
|
+
gpu_count: 1
|
|
70
|
+
gpu_vram_gb: 48
|
|
71
|
+
notes: '48 GB VRAM accommodates full dimension sweep (up to d=2048) and larger sample counts. Image generation ablation grid benefits from additional GPU slots if available.
|
|
72
|
+
|
|
73
|
+
'
|
|
74
|
+
environment:
|
|
75
|
+
python: '3.11'
|
|
76
|
+
cuda: '11.8'
|
|
77
|
+
pytorch: 2.1.0
|
|
78
|
+
flash_attn: null
|
|
79
|
+
key_packages:
|
|
80
|
+
- jax==0.4.23
|
|
81
|
+
- jaxlib==0.4.23
|
|
82
|
+
- transformers==4.51.3
|
|
83
|
+
- diffusers==0.33.1
|
|
84
|
+
- torch>=2.1.0
|
|
85
|
+
- ot (POT library for baseline comparisons)
|
|
86
|
+
- tqdm
|
|
87
|
+
- matplotlib
|
|
88
|
+
- pandas
|
|
89
|
+
- numpy
|
|
90
|
+
notes:
|
|
91
|
+
- The packaged repository mixes PyTorch (analysis scripts), JAX/jaxlib (image generation), and diffusion-style experiment routes rather than one narrow runtime profile.
|
|
92
|
+
- Analysis scripts default to CUDA with `torch.device('cuda' if torch.cuda.is_available() else 'cpu')`.
|
|
93
|
+
- Image generation sweep script (`experiments/image_gen/exp.sh`) schedules 72 jobs round-robin across allocated GPU slots; wall-clock time scales with GPU count.
|
|
94
|
+
- Baseline comparisons in runtime benchmarks import sopt, spot, pawl, sliced_unbalanced_ot, and unbalanced_sliced_ot from the bundled baselines module.
|
|
95
|
+
risk_flags:
|
|
96
|
+
- route_caveat
|
|
97
|
+
- multi_route_experiment_family
|
|
98
|
+
- mixed_runtime_environment
|
|
99
|
+
- multi_gpu_scheduling_dependent
|
|
100
|
+
risk_notes:
|
|
101
|
+
- The packaged repository is structurally complete, but the optimizer target is not one root command; point-cloud, image-generation, image-to-image, and analysis routes differ materially in setup and execution.
|
|
102
|
+
- The packaged `experiments/image_gen/exp.sh` schedules 72 jobs round-robin across the listed GPUs, so a full ablation sweep on one GPU is naturally multi-day.
|
|
103
|
+
- The runtime environment mixes PyTorch (convergence, runtime analysis), JAX/jaxlib (image generation), and diffusion libraries; ensure both CUDA toolchains are compatible.
|
|
104
|
+
- Some subroutes can auto-download simple datasets such as MNIST, while others require manual assets or pretrained checkpoints before evaluation.
|
|
105
|
+
- Convergence eval uses synthetic Gaussian data only; generative downstream quality must be evaluated separately via experiment family routes.
|
|
106
|
+
recommended_when: 当你需要支持非平衡测度的几何最优传输基准、能够明确选择实验族、并具备可支撑多日消融的 GPU 资源时使用本基准。适合比较部分传输求解器在收敛偏差、运行时扩展性和类别不平衡生成任务中的表现。
|
|
107
|
+
not_recommended_when: 如果你需要单命令执行、CPU 优先流程、无分支的紧凑数据集,或无需执行即可获得预计算指标,不建议使用本基准。在无 CUDA GPU 的环境下也不适用。
|
|
108
|
+
paper:
|
|
109
|
+
title: Tree-Sliced Entropy Partial Transport
|
|
110
|
+
venue: NeurIPS 2025
|
|
111
|
+
year: 2025
|
|
112
|
+
url: https://openreview.net/forum?id=41ZbysfW4h
|
|
113
|
+
authors:
|
|
114
|
+
- Viet-Hoang Tran (National University of Singapore)
|
|
115
|
+
- Thanh Tran (VinUniversity)
|
|
116
|
+
- Thanh Chu (National University of Singapore)
|
|
117
|
+
- Tam Le (Institute of Statistical Mathematics)
|
|
118
|
+
- Tan M. Nguyen (National University of Singapore)
|
|
119
|
+
download:
|
|
120
|
+
url: https://github.com/ResearAI/DeepScientist/releases/download/aisb-v0.0.1/aisb.t3.075_treeslicedentropy.zip
|
|
121
|
+
archive_type: zip
|
|
122
|
+
local_dir_name: paper-75-TreeSlicedEntropy
|
|
123
|
+
provider: github_release
|
|
124
|
+
repo: ResearAI/DeepScientist
|
|
125
|
+
tag: aisb-v0.0.1
|
|
126
|
+
asset_name: aisb.t3.075_treeslicedentropy.zip
|
|
127
|
+
sha256: c73a8da6a3b04ef4a24eb1345993f985e84234db16636906626f07cb762fa33c
|
|
128
|
+
size_bytes: 774639
|
|
129
|
+
display:
|
|
130
|
+
palette_seed: jade-bone-transport
|
|
131
|
+
art_style: geometric-minimal
|
|
132
|
+
accent_priority: high
|
|
133
|
+
image_path: ../../../AISB/image/075_aisb.t3.075_treeslicedentropy.jpg
|
|
134
|
+
capability_tags:
|
|
135
|
+
- optimal_transport
|
|
136
|
+
- tree_sliced_wasserstein
|
|
137
|
+
- partial_transport
|
|
138
|
+
- unbalanced_measures
|
|
139
|
+
- generative_modeling
|
|
140
|
+
- probabilistic_geometry
|
|
141
|
+
- scientific_ml
|
|
142
|
+
- research_code_optimization
|
|
143
|
+
aisb_direction: T3
|
|
144
|
+
track_fit:
|
|
145
|
+
- paper_track
|
|
146
|
+
- benchmark_track
|
|
147
|
+
commercial:
|
|
148
|
+
annual_fee: null
|