@researai/deepscientist 1.5.16 → 1.6.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (896) hide show
  1. package/AGENTS.md +309 -130
  2. package/AISB/catalog/aisb.b1.agentic_coding.yaml +244 -0
  3. package/AISB/catalog/aisb.b10.climate_earth.yaml +235 -0
  4. package/AISB/catalog/aisb.b11.model_efficiency.yaml +231 -0
  5. package/AISB/catalog/aisb.b12.embodied_ai.yaml +238 -0
  6. package/AISB/catalog/aisb.b2.agent_systems.yaml +229 -0
  7. package/AISB/catalog/aisb.b3.self_evolving_rl.yaml +237 -0
  8. package/AISB/catalog/aisb.b4.lm_reasoning.yaml +240 -0
  9. package/AISB/catalog/aisb.b5.math_proof.yaml +235 -0
  10. package/AISB/catalog/aisb.b6.research_process.yaml +243 -0
  11. package/AISB/catalog/aisb.b7.multimodal_fusion.yaml +232 -0
  12. package/AISB/catalog/aisb.b8.lifesci_drug.yaml +275 -0
  13. package/AISB/catalog/aisb.b9.material_science.yaml +237 -0
  14. package/AISB/catalog/aisb.t3.001_savvy.yaml +159 -0
  15. package/AISB/catalog/aisb.t3.001_savvy.zh.yaml +121 -0
  16. package/AISB/catalog/aisb.t3.002_pinet.yaml +189 -0
  17. package/AISB/catalog/aisb.t3.002_pinet.zh.yaml +130 -0
  18. package/AISB/catalog/aisb.t3.004_decentralattn.yaml +184 -0
  19. package/AISB/catalog/aisb.t3.004_decentralattn.zh.yaml +153 -0
  20. package/AISB/catalog/aisb.t3.005_tsae.yaml +193 -0
  21. package/AISB/catalog/aisb.t3.005_tsae.zh.yaml +139 -0
  22. package/AISB/catalog/aisb.t3.006_physense.yaml +194 -0
  23. package/AISB/catalog/aisb.t3.006_physense.zh.yaml +118 -0
  24. package/AISB/catalog/aisb.t3.007_reasoningiqa.yaml +169 -0
  25. package/AISB/catalog/aisb.t3.007_reasoningiqa.zh.yaml +133 -0
  26. package/AISB/catalog/aisb.t3.008_meanflows.yaml +188 -0
  27. package/AISB/catalog/aisb.t3.008_meanflows.zh.yaml +140 -0
  28. package/AISB/catalog/aisb.t3.009_scoremissing.yaml +179 -0
  29. package/AISB/catalog/aisb.t3.009_scoremissing.zh.yaml +119 -0
  30. package/AISB/catalog/aisb.t3.010_suitabilityfilter.yaml +221 -0
  31. package/AISB/catalog/aisb.t3.010_suitabilityfilter.zh.yaml +141 -0
  32. package/AISB/catalog/aisb.t3.011_osd.yaml +206 -0
  33. package/AISB/catalog/aisb.t3.011_osd.zh.yaml +163 -0
  34. package/AISB/catalog/aisb.t3.012_efficientqat.yaml +206 -0
  35. package/AISB/catalog/aisb.t3.012_efficientqat.zh.yaml +159 -0
  36. package/AISB/catalog/aisb.t3.013_appl.yaml +152 -0
  37. package/AISB/catalog/aisb.t3.013_appl.zh.yaml +126 -0
  38. package/AISB/catalog/aisb.t3.014_piguard.yaml +207 -0
  39. package/AISB/catalog/aisb.t3.014_piguard.zh.yaml +164 -0
  40. package/AISB/catalog/aisb.t3.015_frspec.yaml +209 -0
  41. package/AISB/catalog/aisb.t3.015_frspec.zh.yaml +163 -0
  42. package/AISB/catalog/aisb.t3.016_mathfusion.yaml +166 -0
  43. package/AISB/catalog/aisb.t3.016_mathfusion.zh.yaml +145 -0
  44. package/AISB/catalog/aisb.t3.017_multimodalglp.yaml +171 -0
  45. package/AISB/catalog/aisb.t3.017_multimodalglp.zh.yaml +122 -0
  46. package/AISB/catalog/aisb.t3.018_cotsynth.yaml +206 -0
  47. package/AISB/catalog/aisb.t3.018_cotsynth.zh.yaml +162 -0
  48. package/AISB/catalog/aisb.t3.019_dyscaleut.yaml +211 -0
  49. package/AISB/catalog/aisb.t3.019_dyscaleut.zh.yaml +148 -0
  50. package/AISB/catalog/aisb.t3.020_aristotle.yaml +173 -0
  51. package/AISB/catalog/aisb.t3.020_aristotle.zh.yaml +119 -0
  52. package/AISB/catalog/aisb.t3.021_tokenrecycling.yaml +160 -0
  53. package/AISB/catalog/aisb.t3.021_tokenrecycling.zh.yaml +129 -0
  54. package/AISB/catalog/aisb.t3.022_chainofreasoning.yaml +204 -0
  55. package/AISB/catalog/aisb.t3.022_chainofreasoning.zh.yaml +161 -0
  56. package/AISB/catalog/aisb.t3.023_guidedembed.yaml +211 -0
  57. package/AISB/catalog/aisb.t3.023_guidedembed.zh.yaml +189 -0
  58. package/AISB/catalog/aisb.t3.024_outputcentric.yaml +148 -0
  59. package/AISB/catalog/aisb.t3.024_outputcentric.zh.yaml +131 -0
  60. package/AISB/catalog/aisb.t3.025_deeper.yaml +143 -0
  61. package/AISB/catalog/aisb.t3.025_deeper.zh.yaml +116 -0
  62. package/AISB/catalog/aisb.t3.026_gartkg.yaml +195 -0
  63. package/AISB/catalog/aisb.t3.026_gartkg.zh.yaml +127 -0
  64. package/AISB/catalog/aisb.t3.027_citeeval.yaml +182 -0
  65. package/AISB/catalog/aisb.t3.027_citeeval.zh.yaml +135 -0
  66. package/AISB/catalog/aisb.t3.028_sbam.yaml +206 -0
  67. package/AISB/catalog/aisb.t3.028_sbam.zh.yaml +166 -0
  68. package/AISB/catalog/aisb.t3.029_cdqgeoembed.yaml +224 -0
  69. package/AISB/catalog/aisb.t3.029_cdqgeoembed.zh.yaml +142 -0
  70. package/AISB/catalog/aisb.t3.030_processrm.yaml +211 -0
  71. package/AISB/catalog/aisb.t3.030_processrm.zh.yaml +166 -0
  72. package/AISB/catalog/aisb.t3.031_circuitstability.yaml +172 -0
  73. package/AISB/catalog/aisb.t3.031_circuitstability.zh.yaml +134 -0
  74. package/AISB/catalog/aisb.t3.032_ptsolver.yaml +169 -0
  75. package/AISB/catalog/aisb.t3.032_ptsolver.zh.yaml +135 -0
  76. package/AISB/catalog/aisb.t3.033_gcse.yaml +144 -0
  77. package/AISB/catalog/aisb.t3.033_gcse.zh.yaml +126 -0
  78. package/AISB/catalog/aisb.t3.034_ensemblewm.yaml +183 -0
  79. package/AISB/catalog/aisb.t3.034_ensemblewm.zh.yaml +146 -0
  80. package/AISB/catalog/aisb.t3.035_moralvalueswa.yaml +207 -0
  81. package/AISB/catalog/aisb.t3.035_moralvalueswa.zh.yaml +165 -0
  82. package/AISB/catalog/aisb.t3.036_weakstrongpref.yaml +210 -0
  83. package/AISB/catalog/aisb.t3.036_weakstrongpref.zh.yaml +194 -0
  84. package/AISB/catalog/aisb.t3.037_dementiamask.yaml +172 -0
  85. package/AISB/catalog/aisb.t3.037_dementiamask.zh.yaml +132 -0
  86. package/AISB/catalog/aisb.t3.038_tinysam.yaml +284 -0
  87. package/AISB/catalog/aisb.t3.038_tinysam.zh.yaml +240 -0
  88. package/AISB/catalog/aisb.t3.039_calf.yaml +224 -0
  89. package/AISB/catalog/aisb.t3.039_calf.zh.yaml +194 -0
  90. package/AISB/catalog/aisb.t3.040_graniteguardian.yaml +199 -0
  91. package/AISB/catalog/aisb.t3.040_graniteguardian.zh.yaml +174 -0
  92. package/AISB/catalog/aisb.t3.041_amdm.yaml +149 -0
  93. package/AISB/catalog/aisb.t3.041_amdm.zh.yaml +137 -0
  94. package/AISB/catalog/aisb.t3.042_xpatch.yaml +216 -0
  95. package/AISB/catalog/aisb.t3.042_xpatch.zh.yaml +182 -0
  96. package/AISB/catalog/aisb.t3.043_vhm.yaml +268 -0
  97. package/AISB/catalog/aisb.t3.043_vhm.zh.yaml +193 -0
  98. package/AISB/catalog/aisb.t3.044_rgvi.yaml +224 -0
  99. package/AISB/catalog/aisb.t3.044_rgvi.zh.yaml +176 -0
  100. package/AISB/catalog/aisb.t3.045_pslstm.yaml +203 -0
  101. package/AISB/catalog/aisb.t3.045_pslstm.zh.yaml +179 -0
  102. package/AISB/catalog/aisb.t3.046_nonstatts.yaml +208 -0
  103. package/AISB/catalog/aisb.t3.046_nonstatts.zh.yaml +194 -0
  104. package/AISB/catalog/aisb.t3.047_timepfn.yaml +156 -0
  105. package/AISB/catalog/aisb.t3.047_timepfn.zh.yaml +124 -0
  106. package/AISB/catalog/aisb.t3.048_proxyspex.yaml +148 -0
  107. package/AISB/catalog/aisb.t3.048_proxyspex.zh.yaml +125 -0
  108. package/AISB/catalog/aisb.t3.049_hogwildinference.yaml +183 -0
  109. package/AISB/catalog/aisb.t3.049_hogwildinference.zh.yaml +138 -0
  110. package/AISB/catalog/aisb.t3.050_causalpfn.yaml +214 -0
  111. package/AISB/catalog/aisb.t3.050_causalpfn.zh.yaml +190 -0
  112. package/AISB/catalog/aisb.t3.051_flashtp.yaml +169 -0
  113. package/AISB/catalog/aisb.t3.051_flashtp.zh.yaml +124 -0
  114. package/AISB/catalog/aisb.t3.052_nsdiff.yaml +155 -0
  115. package/AISB/catalog/aisb.t3.052_nsdiff.zh.yaml +138 -0
  116. package/AISB/catalog/aisb.t3.053_k2vae.yaml +158 -0
  117. package/AISB/catalog/aisb.t3.053_k2vae.zh.yaml +132 -0
  118. package/AISB/catalog/aisb.t3.054_timebase.yaml +178 -0
  119. package/AISB/catalog/aisb.t3.054_timebase.zh.yaml +158 -0
  120. package/AISB/catalog/aisb.t3.055_csbrain.yaml +238 -0
  121. package/AISB/catalog/aisb.t3.055_csbrain.zh.yaml +184 -0
  122. package/AISB/catalog/aisb.t3.056_infosam.yaml +224 -0
  123. package/AISB/catalog/aisb.t3.056_infosam.zh.yaml +189 -0
  124. package/AISB/catalog/aisb.t3.057_mdreid.yaml +129 -0
  125. package/AISB/catalog/aisb.t3.057_mdreid.zh.yaml +117 -0
  126. package/AISB/catalog/aisb.t3.058_mindglitch.yaml +171 -0
  127. package/AISB/catalog/aisb.t3.058_mindglitch.zh.yaml +145 -0
  128. package/AISB/catalog/aisb.t3.059_selfsupervised.yaml +154 -0
  129. package/AISB/catalog/aisb.t3.059_selfsupervised.zh.yaml +125 -0
  130. package/AISB/catalog/aisb.t3.060_iaggad.yaml +121 -0
  131. package/AISB/catalog/aisb.t3.060_iaggad.zh.yaml +100 -0
  132. package/AISB/catalog/aisb.t3.061_hsgkn.yaml +136 -0
  133. package/AISB/catalog/aisb.t3.061_hsgkn.zh.yaml +113 -0
  134. package/AISB/catalog/aisb.t3.062_visionts.yaml +237 -0
  135. package/AISB/catalog/aisb.t3.062_visionts.zh.yaml +216 -0
  136. package/AISB/catalog/aisb.t3.063_tsrag.yaml +162 -0
  137. package/AISB/catalog/aisb.t3.063_tsrag.zh.yaml +138 -0
  138. package/AISB/catalog/aisb.t3.064_pir.yaml +221 -0
  139. package/AISB/catalog/aisb.t3.064_pir.zh.yaml +197 -0
  140. package/AISB/catalog/aisb.t3.065_proteinbinding.yaml +234 -0
  141. package/AISB/catalog/aisb.t3.065_proteinbinding.zh.yaml +167 -0
  142. package/AISB/catalog/aisb.t3.066_tropicalattention.yaml +267 -0
  143. package/AISB/catalog/aisb.t3.066_tropicalattention.zh.yaml +229 -0
  144. package/AISB/catalog/aisb.t3.067_kanad.yaml +193 -0
  145. package/AISB/catalog/aisb.t3.067_kanad.zh.yaml +167 -0
  146. package/AISB/catalog/aisb.t3.068_sempo.yaml +187 -0
  147. package/AISB/catalog/aisb.t3.068_sempo.zh.yaml +148 -0
  148. package/AISB/catalog/aisb.t3.069_treehfd.yaml +129 -0
  149. package/AISB/catalog/aisb.t3.069_treehfd.zh.yaml +111 -0
  150. package/AISB/catalog/aisb.t3.070_certifiedunlearning.yaml +224 -0
  151. package/AISB/catalog/aisb.t3.070_certifiedunlearning.zh.yaml +171 -0
  152. package/AISB/catalog/aisb.t3.071_neuralmjd.yaml +142 -0
  153. package/AISB/catalog/aisb.t3.071_neuralmjd.zh.yaml +120 -0
  154. package/AISB/catalog/aisb.t3.072_fedgmt.yaml +181 -0
  155. package/AISB/catalog/aisb.t3.072_fedgmt.zh.yaml +158 -0
  156. package/AISB/catalog/aisb.t3.073_rld.yaml +161 -0
  157. package/AISB/catalog/aisb.t3.073_rld.zh.yaml +129 -0
  158. package/AISB/catalog/aisb.t3.074_lsvi.yaml +163 -0
  159. package/AISB/catalog/aisb.t3.074_lsvi.zh.yaml +129 -0
  160. package/AISB/catalog/aisb.t3.075_treeslicedentropy.yaml +201 -0
  161. package/AISB/catalog/aisb.t3.075_treeslicedentropy.zh.yaml +148 -0
  162. package/AISB/catalog/aisb.t3.076_aanet.yaml +169 -0
  163. package/AISB/catalog/aisb.t3.076_aanet.zh.yaml +129 -0
  164. package/AISB/catalog/aisb.t3.077_cmnn.yaml +199 -0
  165. package/AISB/catalog/aisb.t3.077_cmnn.zh.yaml +165 -0
  166. package/AISB/catalog/aisb.t3.078_conformalanomaly.yaml +146 -0
  167. package/AISB/catalog/aisb.t3.078_conformalanomaly.zh.yaml +117 -0
  168. package/AISB/catalog/aisb.t3.079_dpfkmeans.yaml +131 -0
  169. package/AISB/catalog/aisb.t3.079_dpfkmeans.zh.yaml +104 -0
  170. package/AISB/catalog/aisb.t3.080_latentscorereweight.yaml +169 -0
  171. package/AISB/catalog/aisb.t3.080_latentscorereweight.zh.yaml +123 -0
  172. package/AISB/catalog/aisb.t3.081_qmamba.yaml +150 -0
  173. package/AISB/catalog/aisb.t3.081_qmamba.zh.yaml +117 -0
  174. package/AISB/catalog/aisb.t3.082_onlinellmrouting.yaml +160 -0
  175. package/AISB/catalog/aisb.t3.082_onlinellmrouting.zh.yaml +133 -0
  176. package/AISB/catalog/aisb.t3.083_starformer.yaml +178 -0
  177. package/AISB/catalog/aisb.t3.083_starformer.zh.yaml +140 -0
  178. package/AISB/catalog/aisb.t3.084_ift.yaml +139 -0
  179. package/AISB/catalog/aisb.t3.084_ift.zh.yaml +111 -0
  180. package/AISB/catalog/aisb.t3.085_neuralsurv.yaml +183 -0
  181. package/AISB/catalog/aisb.t3.085_neuralsurv.zh.yaml +143 -0
  182. package/AISB/catalog/aisb.t3.086_stella.yaml +197 -0
  183. package/AISB/catalog/aisb.t3.086_stella.zh.yaml +142 -0
  184. package/AISB/catalog/aisb.t3.087_moses.yaml +167 -0
  185. package/AISB/catalog/aisb.t3.087_moses.zh.yaml +132 -0
  186. package/AISB/catalog/aisb.t3.088_channelnorm.yaml +140 -0
  187. package/AISB/catalog/aisb.t3.088_channelnorm.zh.yaml +109 -0
  188. package/AISB/catalog/aisb.t3.089_causalvelocity.yaml +730 -0
  189. package/AISB/catalog/aisb.t3.089_causalvelocity.zh.yaml +668 -0
  190. package/AISB/catalog/aisb.t3.090_rstib.yaml +144 -0
  191. package/AISB/catalog/aisb.t3.090_rstib.zh.yaml +109 -0
  192. package/AISB/catalog/aisb.t3.091_timeawarecausal.yaml +132 -0
  193. package/AISB/catalog/aisb.t3.091_timeawarecausal.zh.yaml +107 -0
  194. package/AISB/catalog/aisb.t3.092_kmeanslocalopt.yaml +138 -0
  195. package/AISB/catalog/aisb.t3.092_kmeanslocalopt.zh.yaml +110 -0
  196. package/AISB/catalog/aisb.t3.093_fedwmsam.yaml +134 -0
  197. package/AISB/catalog/aisb.t3.093_fedwmsam.zh.yaml +106 -0
  198. package/AISB/catalog/aisb.t3.094_boundre.yaml +147 -0
  199. package/AISB/catalog/aisb.t3.094_boundre.zh.yaml +114 -0
  200. package/AISB/catalog/aisb.t3.095_fastfeaturecp.yaml +153 -0
  201. package/AISB/catalog/aisb.t3.095_fastfeaturecp.zh.yaml +118 -0
  202. package/AISB/catalog/aisb.t3.096_m3svm.yaml +189 -0
  203. package/AISB/catalog/aisb.t3.096_m3svm.zh.yaml +149 -0
  204. package/AISB/catalog/aisb.t3.097_wassersteintl.yaml +212 -0
  205. package/AISB/catalog/aisb.t3.097_wassersteintl.zh.yaml +169 -0
  206. package/AISB/catalog/aisb.t3.098_xmahalanobis.yaml +171 -0
  207. package/AISB/catalog/aisb.t3.098_xmahalanobis.zh.yaml +127 -0
  208. package/AISB/catalog/aisb.t3.099_ollalanding.yaml +248 -0
  209. package/AISB/catalog/aisb.t3.099_ollalanding.zh.yaml +182 -0
  210. package/AISB/catalog/aisb.t3.100_invmissingdata.yaml +179 -0
  211. package/AISB/catalog/aisb.t3.100_invmissingdata.zh.yaml +150 -0
  212. package/AISB/catalog/aisb.t3.101_acia.yaml +164 -0
  213. package/AISB/catalog/aisb.t3.101_acia.zh.yaml +109 -0
  214. package/AISB/catalog/aisb.t3.102_stochasticff.yaml +178 -0
  215. package/AISB/catalog/aisb.t3.102_stochasticff.zh.yaml +130 -0
  216. package/AISB/catalog/aisb.t3.103_qdcp.yaml +150 -0
  217. package/AISB/catalog/aisb.t3.103_qdcp.zh.yaml +116 -0
  218. package/AISB/catalog/aisb.t3.104_balancedactiveinf.yaml +137 -0
  219. package/AISB/catalog/aisb.t3.104_balancedactiveinf.zh.yaml +104 -0
  220. package/AISB/catalog/aisb.t3.105_binaryclasseval.yaml +161 -0
  221. package/AISB/catalog/aisb.t3.105_binaryclasseval.zh.yaml +130 -0
  222. package/AISB/image/001_aisb.t3.001_savvy.jpg +0 -0
  223. package/AISB/image/002_aisb.t3.002_pinet.jpg +0 -0
  224. package/AISB/image/003_aisb.t3.003_dmsqd.jpg +0 -0
  225. package/AISB/image/004_aisb.t3.004_decentralattn.jpg +0 -0
  226. package/AISB/image/005_aisb.t3.005_tsae.jpg +0 -0
  227. package/AISB/image/006_aisb.t3.006_physense.jpg +0 -0
  228. package/AISB/image/007_aisb.t3.007_reasoningiqa.jpg +0 -0
  229. package/AISB/image/008_aisb.t3.008_meanflows.jpg +0 -0
  230. package/AISB/image/009_aisb.t3.009_scoremissing.jpg +0 -0
  231. package/AISB/image/010_aisb.t3.010_suitabilityfilter.jpg +0 -0
  232. package/AISB/image/011_aisb.t3.011_osd.jpg +0 -0
  233. package/AISB/image/012_aisb.t3.012_efficientqat.jpg +0 -0
  234. package/AISB/image/013_aisb.t3.013_appl.jpg +0 -0
  235. package/AISB/image/014_aisb.t3.014_piguard.jpg +0 -0
  236. package/AISB/image/015_aisb.t3.015_frspec.jpg +0 -0
  237. package/AISB/image/016_aisb.t3.016_mathfusion.jpg +0 -0
  238. package/AISB/image/017_aisb.t3.017_multimodalglp.jpg +0 -0
  239. package/AISB/image/018_aisb.t3.018_cotsynth.jpg +0 -0
  240. package/AISB/image/019_aisb.t3.019_dyscaleut.jpg +0 -0
  241. package/AISB/image/020_aisb.t3.020_aristotle.jpg +0 -0
  242. package/AISB/image/021_aisb.t3.021_tokenrecycling.jpg +0 -0
  243. package/AISB/image/022_aisb.t3.022_chainofreasoning.jpg +0 -0
  244. package/AISB/image/023_aisb.t3.023_guidedembed.jpg +0 -0
  245. package/AISB/image/024_aisb.t3.024_outputcentric.jpg +0 -0
  246. package/AISB/image/025_aisb.t3.025_deeper.jpg +0 -0
  247. package/AISB/image/026_aisb.t3.026_gartkg.jpg +0 -0
  248. package/AISB/image/027_aisb.t3.027_citeeval.jpg +0 -0
  249. package/AISB/image/028_aisb.t3.028_sbam.jpg +0 -0
  250. package/AISB/image/029_aisb.t3.029_cdqgeoembed.jpg +0 -0
  251. package/AISB/image/030_aisb.t3.030_processrm.jpg +0 -0
  252. package/AISB/image/031_aisb.t3.031_circuitstability.jpg +0 -0
  253. package/AISB/image/032_aisb.t3.032_ptsolver.jpg +0 -0
  254. package/AISB/image/033_aisb.t3.033_gcse.jpg +0 -0
  255. package/AISB/image/034_aisb.t3.034_ensemblewm.jpg +0 -0
  256. package/AISB/image/035_aisb.t3.035_moralvalueswa.jpg +0 -0
  257. package/AISB/image/036_aisb.t3.036_weakstrongpref.jpg +0 -0
  258. package/AISB/image/037_aisb.t3.037_dementiamask.jpg +0 -0
  259. package/AISB/image/038_aisb.t3.038_tinysam.jpg +0 -0
  260. package/AISB/image/039_aisb.t3.039_calf.jpg +0 -0
  261. package/AISB/image/040_aisb.t3.040_graniteguardian.jpg +0 -0
  262. package/AISB/image/041_aisb.t3.041_amdm.jpg +0 -0
  263. package/AISB/image/042_aisb.t3.042_xpatch.jpg +0 -0
  264. package/AISB/image/043_aisb.t3.043_vhm.jpg +0 -0
  265. package/AISB/image/044_aisb.t3.044_rgvi.jpg +0 -0
  266. package/AISB/image/045_aisb.t3.045_pslstm.jpg +0 -0
  267. package/AISB/image/046_aisb.t3.046_nonstatts.jpg +0 -0
  268. package/AISB/image/047_aisb.t3.047_timepfn.jpg +0 -0
  269. package/AISB/image/048_aisb.t3.048_proxyspex.jpg +0 -0
  270. package/AISB/image/049_aisb.t3.049_hogwildinference.jpg +0 -0
  271. package/AISB/image/050_aisb.t3.050_causalpfn.jpg +0 -0
  272. package/AISB/image/051_aisb.t3.051_flashtp.jpg +0 -0
  273. package/AISB/image/052_aisb.t3.052_nsdiff.jpg +0 -0
  274. package/AISB/image/053_aisb.t3.053_k2vae.jpg +0 -0
  275. package/AISB/image/054_aisb.t3.054_timebase.jpg +0 -0
  276. package/AISB/image/055_aisb.t3.055_csbrain.jpg +0 -0
  277. package/AISB/image/056_aisb.t3.056_infosam.jpg +0 -0
  278. package/AISB/image/057_aisb.t3.057_mdreid.jpg +0 -0
  279. package/AISB/image/058_aisb.t3.058_mindglitch.jpg +0 -0
  280. package/AISB/image/059_aisb.t3.059_selfsupervised.jpg +0 -0
  281. package/AISB/image/060_aisb.t3.060_iaggad.jpg +0 -0
  282. package/AISB/image/061_aisb.t3.061_hsgkn.jpg +0 -0
  283. package/AISB/image/062_aisb.t3.062_visionts.jpg +0 -0
  284. package/AISB/image/063_aisb.t3.063_tsrag.jpg +0 -0
  285. package/AISB/image/064_aisb.t3.064_pir.jpg +0 -0
  286. package/AISB/image/065_aisb.t3.065_proteinbinding.jpg +0 -0
  287. package/AISB/image/066_aisb.t3.066_tropicalattention.jpg +0 -0
  288. package/AISB/image/067_aisb.t3.067_kanad.jpg +0 -0
  289. package/AISB/image/068_aisb.t3.068_sempo.jpg +0 -0
  290. package/AISB/image/069_aisb.t3.069_treehfd.jpg +0 -0
  291. package/AISB/image/070_aisb.t3.070_certifiedunlearning.jpg +0 -0
  292. package/AISB/image/071_aisb.t3.071_neuralmjd.jpg +0 -0
  293. package/AISB/image/072_aisb.t3.072_fedgmt.jpg +0 -0
  294. package/AISB/image/073_aisb.t3.073_rld.jpg +0 -0
  295. package/AISB/image/074_aisb.t3.074_lsvi.jpg +0 -0
  296. package/AISB/image/075_aisb.t3.075_treeslicedentropy.jpg +0 -0
  297. package/AISB/image/076_aisb.t3.076_aanet.jpg +0 -0
  298. package/AISB/image/077_aisb.t3.077_cmnn.jpg +0 -0
  299. package/AISB/image/078_aisb.t3.078_conformalanomaly.jpg +0 -0
  300. package/AISB/image/079_aisb.t3.079_dpfkmeans.jpg +0 -0
  301. package/AISB/image/080_aisb.t3.080_latentscorereweight.jpg +0 -0
  302. package/AISB/image/081_aisb.t3.081_qmamba.jpg +0 -0
  303. package/AISB/image/082_aisb.t3.082_onlinellmrouting.jpg +0 -0
  304. package/AISB/image/083_aisb.t3.083_starformer.jpg +0 -0
  305. package/AISB/image/084_aisb.t3.084_ift.jpg +0 -0
  306. package/AISB/image/085_aisb.t3.085_neuralsurv.jpg +0 -0
  307. package/AISB/image/086_aisb.t3.086_stella.jpg +0 -0
  308. package/AISB/image/087_aisb.t3.087_moses.jpg +0 -0
  309. package/AISB/image/088_aisb.t3.088_channelnorm.jpg +0 -0
  310. package/AISB/image/089_aisb.t3.089_causalvelocity.jpg +0 -0
  311. package/AISB/image/090_aisb.t3.090_rstib.jpg +0 -0
  312. package/AISB/image/091_aisb.t3.091_timeawarecausal.jpg +0 -0
  313. package/AISB/image/092_aisb.t3.092_kmeanslocalopt.jpg +0 -0
  314. package/AISB/image/093_aisb.t3.093_fedwmsam.jpg +0 -0
  315. package/AISB/image/094_aisb.t3.094_boundre.jpg +0 -0
  316. package/AISB/image/095_aisb.t3.095_fastfeaturecp.jpg +0 -0
  317. package/AISB/image/096_aisb.t3.096_m3svm.jpg +0 -0
  318. package/AISB/image/097_aisb.t3.097_wassersteintl.jpg +0 -0
  319. package/AISB/image/098_aisb.t3.098_xmahalanobis.jpg +0 -0
  320. package/AISB/image/099_aisb.t3.099_ollalanding.jpg +0 -0
  321. package/AISB/image/100_aisb.t3.100_invmissingdata.jpg +0 -0
  322. package/AISB/image/101_aisb.t3.101_acia.jpg +0 -0
  323. package/AISB/image/102_aisb.t3.102_stochasticff.jpg +0 -0
  324. package/AISB/image/103_aisb.t3.103_qdcp.jpg +0 -0
  325. package/AISB/image/104_aisb.t3.104_balancedactiveinf.jpg +0 -0
  326. package/AISB/image/105_aisb.t3.105_binaryclasseval.jpg +0 -0
  327. package/AISB/image/106_aisb.t1.reasoning_lite.jpg +0 -0
  328. package/AISB/image/107_aisb.t2.paper_audit.jpg +0 -0
  329. package/AISB/image/108_aisb.t3.multi_gpu_search.jpg +0 -0
  330. package/AISB/image/109_aisb.t3.tdc_admet.jpg +0 -0
  331. package/AISB/image/aisb.b1.agentic_coding.svg +16 -0
  332. package/AISB/image/aisb.b10.climate_earth.svg +16 -0
  333. package/AISB/image/aisb.b11.model_efficiency.svg +16 -0
  334. package/AISB/image/aisb.b12.embodied_ai.svg +16 -0
  335. package/AISB/image/aisb.b2.agent_systems.svg +16 -0
  336. package/AISB/image/aisb.b3.self_evolving_rl.svg +16 -0
  337. package/AISB/image/aisb.b4.lm_reasoning.svg +16 -0
  338. package/AISB/image/aisb.b5.math_proof.svg +16 -0
  339. package/AISB/image/aisb.b6.research_process.svg +16 -0
  340. package/AISB/image/aisb.b7.multimodal_fusion.svg +16 -0
  341. package/AISB/image/aisb.b8.lifesci_drug.svg +16 -0
  342. package/AISB/image/aisb.b9.material_science.svg +16 -0
  343. package/README.md +196 -32
  344. package/bin/ds.js +924 -66
  345. package/docs/en/00_QUICK_START.md +195 -18
  346. package/docs/en/01_SETTINGS_REFERENCE.md +468 -96
  347. package/docs/en/02_START_RESEARCH_GUIDE.md +26 -5
  348. package/docs/en/03_QQ_CONNECTOR_GUIDE.md +14 -3
  349. package/docs/en/04_LINGZHU_CONNECTOR_GUIDE.md +2 -0
  350. package/docs/en/05_TUI_GUIDE.md +171 -2
  351. package/docs/en/07_MEMORY_AND_MCP.md +38 -2
  352. package/docs/en/09_DOCTOR.md +78 -7
  353. package/docs/en/10_WEIXIN_CONNECTOR_GUIDE.md +38 -1
  354. package/docs/en/11_LICENSE_AND_RISK.md +4 -0
  355. package/docs/en/12_GUIDED_WORKFLOW_TOUR.md +15 -0
  356. package/docs/en/14_PROMPT_SKILLS_AND_MCP_GUIDE.md +9 -0
  357. package/docs/en/15_CODEX_PROVIDER_SETUP.md +624 -180
  358. package/docs/en/16_TELEGRAM_CONNECTOR_GUIDE.md +14 -0
  359. package/docs/en/17_WHATSAPP_CONNECTOR_GUIDE.md +14 -0
  360. package/docs/en/18_FEISHU_CONNECTOR_GUIDE.md +14 -0
  361. package/docs/en/21_LOCAL_MODEL_BACKENDS_GUIDE.md +386 -0
  362. package/docs/en/22_BENCHSTORE_YAML_REFERENCE.md +469 -0
  363. package/docs/en/23_BENCHSTORE_GITHUB_RELEASES_SPEC.md +316 -0
  364. package/docs/en/24_CLAUDE_CODE_PROVIDER_SETUP.md +469 -0
  365. package/docs/en/25_OPENCODE_PROVIDER_SETUP.md +653 -0
  366. package/docs/en/26_CITATION_AND_ATTRIBUTION.md +119 -0
  367. package/docs/en/27_KIMI_CODE_PROVIDER_SETUP.md +180 -0
  368. package/docs/en/28_DISCORD_CONNECTOR_GUIDE.md +61 -0
  369. package/docs/en/29_SLACK_CONNECTOR_GUIDE.md +60 -0
  370. package/docs/en/30_SETTINGS_CONTROL_CENTER_GUIDE.md +371 -0
  371. package/docs/en/{19_LOCAL_BROWSER_AUTH.md → 31_LOCAL_BROWSER_AUTH.md} +1 -1
  372. package/docs/en/32_WINDOWS_WSL2_DEPLOYMENT_GUIDE.md +273 -0
  373. package/docs/en/33_WORKSPACE_EXPLORER_QA.md +121 -0
  374. package/docs/en/91_DEVELOPMENT.md +266 -0
  375. package/docs/en/99_ACKNOWLEDGEMENTS.md +24 -19
  376. package/docs/en/README.md +48 -7
  377. package/docs/images/admin/admin-connectors-health-en.png +0 -0
  378. package/docs/images/admin/admin-controllers-en.png +0 -0
  379. package/docs/images/admin/admin-diagnostics-en.png +0 -0
  380. package/docs/images/admin/admin-errors-en.png +0 -0
  381. package/docs/images/admin/admin-issues-en.png +0 -0
  382. package/docs/images/admin/admin-logs-en.png +0 -0
  383. package/docs/images/admin/admin-quest-detail-en.png +0 -0
  384. package/docs/images/admin/admin-quests-en.png +0 -0
  385. package/docs/images/admin/admin-repairs-en.png +0 -0
  386. package/docs/images/admin/admin-runtime-en.png +0 -0
  387. package/docs/images/admin/admin-search-en.png +0 -0
  388. package/docs/images/admin/admin-stats-en.png +0 -0
  389. package/docs/images/admin/admin-summary-en.png +0 -0
  390. package/docs/images/connectors/connector-discord-en.png +0 -0
  391. package/docs/images/connectors/connector-feishu-en.png +0 -0
  392. package/docs/images/connectors/connector-lingzhu-en.png +0 -0
  393. package/docs/images/connectors/connector-qq-en.png +0 -0
  394. package/docs/images/connectors/connector-slack-en.png +0 -0
  395. package/docs/images/connectors/connector-telegram-en.png +0 -0
  396. package/docs/images/connectors/connector-weixin-en.png +0 -0
  397. package/docs/images/connectors/connector-whatsapp-en.png +0 -0
  398. package/docs/images/settings/settings-baselines-en.png +0 -0
  399. package/docs/images/settings/settings-config-en.png +0 -0
  400. package/docs/images/settings/settings-connectors-overview-en.png +0 -0
  401. package/docs/images/settings/settings-deepxiv-en.png +0 -0
  402. package/docs/images/settings/settings-mcp-servers-en.png +0 -0
  403. package/docs/images/settings/settings-plugins-en.png +0 -0
  404. package/docs/images/settings/settings-runners-en.png +0 -0
  405. package/docs/zh/00_QUICK_START.md +142 -18
  406. package/docs/zh/01_SETTINGS_REFERENCE.md +219 -98
  407. package/docs/zh/02_START_RESEARCH_GUIDE.md +26 -5
  408. package/docs/zh/05_TUI_GUIDE.md +171 -2
  409. package/docs/zh/07_MEMORY_AND_MCP.md +29 -2
  410. package/docs/zh/09_DOCTOR.md +54 -8
  411. package/docs/zh/10_WEIXIN_CONNECTOR_GUIDE.md +24 -1
  412. package/docs/zh/11_LICENSE_AND_RISK.md +4 -0
  413. package/docs/zh/12_GUIDED_WORKFLOW_TOUR.md +15 -0
  414. package/docs/zh/14_PROMPT_SKILLS_AND_MCP_GUIDE.md +9 -0
  415. package/docs/zh/15_CODEX_PROVIDER_SETUP.md +552 -181
  416. package/docs/zh/21_LOCAL_MODEL_BACKENDS_GUIDE.md +384 -0
  417. package/docs/zh/22_BENCHSTORE_YAML_REFERENCE.md +459 -0
  418. package/docs/zh/23_BENCHSTORE_GITHUB_RELEASES_SPEC.md +287 -0
  419. package/docs/zh/23_CLAUDE_RUNNER_GUIDE.md +103 -0
  420. package/docs/zh/24_CLAUDE_CODE_PROVIDER_SETUP.md +460 -0
  421. package/docs/zh/25_OPENCODE_PROVIDER_SETUP.md +660 -0
  422. package/docs/zh/26_CITATION_AND_ATTRIBUTION.md +102 -0
  423. package/docs/zh/27_KIMI_CODE_PROVIDER_SETUP.md +51 -0
  424. package/docs/zh/{19_LOCAL_BROWSER_AUTH.md → 31_LOCAL_BROWSER_AUTH.md} +1 -1
  425. package/docs/zh/32_WINDOWS_WSL2_DEPLOYMENT_GUIDE.md +264 -0
  426. package/docs/zh/33_WORKSPACE_EXPLORER_QA.md +127 -0
  427. package/docs/zh/99_ACKNOWLEDGEMENTS.md +23 -19
  428. package/docs/zh/README.md +33 -7
  429. package/install.sh +168 -20
  430. package/package.json +5 -1
  431. package/pyproject.toml +2 -1
  432. package/src/deepscientist/__init__.py +1 -1
  433. package/src/deepscientist/acp/envelope.py +13 -0
  434. package/src/deepscientist/admin/__init__.py +3 -0
  435. package/src/deepscientist/admin/charts.py +681 -0
  436. package/src/deepscientist/admin/logs.py +119 -0
  437. package/src/deepscientist/admin/repairs.py +217 -0
  438. package/src/deepscientist/admin/service.py +1310 -0
  439. package/src/deepscientist/admin/system_info.py +700 -0
  440. package/src/deepscientist/admin/tasks.py +465 -0
  441. package/src/deepscientist/admin/tool_metrics.py +600 -0
  442. package/src/deepscientist/artifact/guidance.py +8 -4
  443. package/src/deepscientist/artifact/schemas.py +115 -0
  444. package/src/deepscientist/artifact/service.py +4268 -260
  445. package/src/deepscientist/bash_exec/monitor.py +30 -3
  446. package/src/deepscientist/bash_exec/service.py +134 -1
  447. package/src/deepscientist/benchstore/__init__.py +4 -0
  448. package/src/deepscientist/benchstore/prompt_builder.py +224 -0
  449. package/src/deepscientist/benchstore/service.py +1716 -0
  450. package/src/deepscientist/bridges/connectors.py +8 -2
  451. package/src/deepscientist/channels/weixin_ilink.py +8 -1
  452. package/src/deepscientist/cli.py +92 -17
  453. package/src/deepscientist/codex_cli_compat.py +187 -74
  454. package/src/deepscientist/config/models.py +82 -11
  455. package/src/deepscientist/config/service.py +1077 -93
  456. package/src/deepscientist/connector/weixin_support.py +48 -17
  457. package/src/deepscientist/daemon/api/handlers.py +827 -235
  458. package/src/deepscientist/daemon/api/router.py +81 -1
  459. package/src/deepscientist/daemon/app.py +1512 -85
  460. package/src/deepscientist/diagnostics/__init__.py +6 -0
  461. package/src/deepscientist/diagnostics/runner_failures.py +277 -0
  462. package/src/deepscientist/doctor.py +407 -56
  463. package/src/deepscientist/evidence_packets.py +590 -0
  464. package/src/deepscientist/home.py +52 -4
  465. package/src/deepscientist/kimi_cli_compat.py +50 -0
  466. package/src/deepscientist/latex_runtime.py +2 -2
  467. package/src/deepscientist/mcp/context.py +2 -0
  468. package/src/deepscientist/mcp/schemas.py +114 -0
  469. package/src/deepscientist/mcp/server.py +1566 -126
  470. package/src/deepscientist/memory/service.py +203 -16
  471. package/src/deepscientist/process_control.py +8 -1
  472. package/src/deepscientist/prompts/builder.py +850 -88
  473. package/src/deepscientist/quest/__init__.py +2 -2
  474. package/src/deepscientist/quest/layout.py +12 -1
  475. package/src/deepscientist/quest/node_traces.py +10 -0
  476. package/src/deepscientist/quest/service.py +1852 -161
  477. package/src/deepscientist/quest/stage_views.py +1 -1
  478. package/src/deepscientist/runners/__init__.py +18 -0
  479. package/src/deepscientist/runners/base.py +89 -1
  480. package/src/deepscientist/runners/builtins.py +13 -1
  481. package/src/deepscientist/runners/claude.py +391 -0
  482. package/src/deepscientist/runners/codex.py +480 -35
  483. package/src/deepscientist/runners/codex_telemetry.py +127 -0
  484. package/src/deepscientist/runners/kimi.py +334 -0
  485. package/src/deepscientist/runners/metadata.py +68 -0
  486. package/src/deepscientist/runners/opencode.py +414 -0
  487. package/src/deepscientist/runners/runtime_overrides.py +100 -0
  488. package/src/deepscientist/runners/simple_cli.py +538 -0
  489. package/src/deepscientist/runtime_storage.py +303 -0
  490. package/src/deepscientist/shared.py +80 -16
  491. package/src/deepscientist/skills/installer.py +37 -0
  492. package/src/deepscientist/skills/registry.py +2 -0
  493. package/src/deepscientist/tinytex.py +2 -2
  494. package/src/deepscientist/tui.py +10 -3
  495. package/src/prompts/benchstore/system.md +77 -0
  496. package/src/prompts/connectors/qq.md +33 -2
  497. package/src/prompts/connectors/weixin.md +208 -23
  498. package/src/prompts/contracts/admin_ops.md +74 -0
  499. package/src/prompts/contracts/admin_ops_knowledge.md +138 -0
  500. package/src/prompts/contracts/shared_interaction.md +5 -10
  501. package/src/prompts/start_setup/system.md +422 -0
  502. package/src/prompts/system.md +411 -304
  503. package/src/prompts/system_copilot.md +89 -0
  504. package/src/skills/analysis-campaign/SKILL.md +239 -578
  505. package/src/skills/analysis-campaign/references/artifact-flow-examples.md +102 -0
  506. package/src/skills/analysis-campaign/references/boundary-cases.md +98 -0
  507. package/src/skills/analysis-campaign/references/campaign-checklist-template.md +39 -24
  508. package/src/skills/analysis-campaign/references/campaign-design.md +26 -10
  509. package/src/skills/analysis-campaign/references/campaign-plan-template.md +53 -54
  510. package/src/skills/analysis-campaign/references/operational-guidance.md +97 -0
  511. package/src/skills/analysis-campaign/references/writing-facing-slice-examples.md +10 -20
  512. package/src/skills/baseline/SKILL.md +183 -461
  513. package/src/skills/baseline/references/artifact-flow-examples.md +106 -0
  514. package/src/skills/baseline/references/artifact-payload-examples.md +1 -1
  515. package/src/skills/baseline/references/baseline-checklist-template.md +27 -35
  516. package/src/skills/baseline/references/baseline-plan-template.md +37 -76
  517. package/src/skills/baseline/references/boundary-cases.md +86 -0
  518. package/src/skills/baseline/references/codebase-audit-checklist.md +2 -6
  519. package/src/skills/baseline/references/comparability-contract.md +7 -12
  520. package/src/skills/baseline/references/operational-guidance.md +56 -0
  521. package/src/skills/baseline/references/route-selection.md +5 -25
  522. package/src/skills/decision/SKILL.md +113 -306
  523. package/src/skills/decision/references/checkpoint-memory-template.md +47 -0
  524. package/src/skills/decision/references/operational-guidance.md +94 -0
  525. package/src/skills/decision/references/research-route-criteria.md +7 -8
  526. package/src/skills/decision/references/strategic-decision-template.md +13 -26
  527. package/src/skills/experiment/SKILL.md +132 -670
  528. package/src/skills/experiment/references/execution-playbook.md +374 -0
  529. package/src/skills/experiment/references/main-experiment-checklist-template.md +26 -2
  530. package/src/skills/experiment/references/main-experiment-plan-template.md +28 -17
  531. package/src/skills/experiment/references/operational-guidance.md +108 -0
  532. package/src/skills/finalize/SKILL.md +62 -0
  533. package/src/skills/finalize/references/checkpoint-memory-template.md +49 -0
  534. package/src/skills/finalize/references/resume-packet-template.md +7 -0
  535. package/src/skills/idea/SKILL.md +228 -15
  536. package/src/skills/idea/references/controlled-brainstorming-playbook.md +78 -0
  537. package/src/skills/idea/references/current-board-packet-template.md +61 -0
  538. package/src/skills/idea/references/high-value-idea-sourcing.md +119 -0
  539. package/src/skills/idea/references/idea-generation-playbook.md +21 -0
  540. package/src/skills/idea/references/idea-thinking-flow.md +6 -0
  541. package/src/skills/idea/references/literature-survey-template.md +3 -0
  542. package/src/skills/idea/references/objective-contract-template.md +54 -0
  543. package/src/skills/idea/references/outline-seeding-example.md +56 -0
  544. package/src/skills/idea/references/pre-idea-draft-template.md +105 -0
  545. package/src/skills/idea/references/related-work-playbook.md +75 -2
  546. package/src/skills/idea/references/research-history-playbook.md +114 -0
  547. package/src/skills/idea/references/selection-gate.md +58 -6
  548. package/src/skills/intake-audit/SKILL.md +43 -2
  549. package/src/skills/intake-audit/references/state-audit-template.md +10 -0
  550. package/src/skills/nature-data/SKILL.md +128 -0
  551. package/src/skills/nature-data/UPSTREAM_LICENSE.txt +21 -0
  552. package/src/skills/nature-data/agents/openai.yaml +4 -0
  553. package/src/skills/nature-data/references/chinese-author-alignment.md +84 -0
  554. package/src/skills/nature-data/references/fair-metadata-checklist.md +105 -0
  555. package/src/skills/nature-data/references/policy-principles.md +103 -0
  556. package/src/skills/nature-data/references/repository-and-identifiers.md +96 -0
  557. package/src/skills/nature-data/references/source-basis.md +54 -0
  558. package/src/skills/nature-data/references/statement-patterns.md +153 -0
  559. package/src/skills/nature-figure/SKILL.md +197 -0
  560. package/src/skills/nature-figure/UPSTREAM_LICENSE.txt +21 -0
  561. package/src/skills/nature-figure/agents/openai.yaml +4 -0
  562. package/src/skills/nature-figure/evals/evals.json +37 -0
  563. package/src/skills/nature-figure/references/api.md +428 -0
  564. package/src/skills/nature-figure/references/backend-selection.md +100 -0
  565. package/src/skills/nature-figure/references/chart-types.md +281 -0
  566. package/src/skills/nature-figure/references/common-patterns.md +349 -0
  567. package/src/skills/nature-figure/references/design-theory.md +436 -0
  568. package/src/skills/nature-figure/references/figure-contract.md +93 -0
  569. package/src/skills/nature-figure/references/nature-2026-observations.md +112 -0
  570. package/src/skills/nature-figure/references/qa-contract.md +119 -0
  571. package/src/skills/nature-figure/references/r-template-index.md +66 -0
  572. package/src/skills/nature-figure/references/r-workflow.md +161 -0
  573. package/src/skills/nature-figure/references/tutorials.md +250 -0
  574. package/src/skills/nature-paper2ppt/SKILL.md +507 -0
  575. package/src/skills/nature-paper2ppt/UPSTREAM_LICENSE.txt +21 -0
  576. package/src/skills/nature-paper2ppt/agents/openai.yaml +4 -0
  577. package/src/skills/nature-polishing/SKILL.md +385 -0
  578. package/src/skills/nature-polishing/UPSTREAM_LICENSE.txt +21 -0
  579. package/src/skills/nature-polishing/agents/openai.yaml +4 -0
  580. package/src/skills/nature-polishing/references/phrasebank-playbook.md +162 -0
  581. package/src/skills/nature-polishing/references/section-moves.md +240 -0
  582. package/src/skills/nature-polishing/references/style-guardrails.md +94 -0
  583. package/src/skills/nature-polishing/references/writing-strategy.md +148 -0
  584. package/src/skills/optimize/SKILL.md +177 -1568
  585. package/src/skills/optimize/references/brief-shaping-playbook.md +95 -0
  586. package/src/skills/optimize/references/candidate-board-template.md +13 -0
  587. package/src/skills/optimize/references/candidate-ranking-template.md +51 -0
  588. package/src/skills/optimize/references/codegen-route-playbook.md +50 -0
  589. package/src/skills/optimize/references/debug-response-template.md +29 -0
  590. package/src/skills/optimize/references/frontier-review-template.md +32 -0
  591. package/src/skills/optimize/references/fusion-playbook.md +36 -0
  592. package/src/skills/optimize/references/method-brief-template.md +73 -0
  593. package/src/skills/optimize/references/operational-guidance.md +621 -0
  594. package/src/skills/optimize/references/optimization-memory-template.md +30 -0
  595. package/src/skills/optimize/references/optimize-checklist-template.md +18 -0
  596. package/src/skills/optimize/references/plateau-response-playbook.md +28 -0
  597. package/src/skills/optimize/references/prompt-patterns.md +49 -0
  598. package/src/skills/paper-outline/SKILL.md +227 -0
  599. package/src/skills/paper-outline/references/outline-patterns.md +87 -0
  600. package/src/skills/paper-plot/SKILL.md +79 -0
  601. package/src/skills/paper-plot/agents/openai.yaml +4 -0
  602. package/src/skills/paper-plot/references/bar_grouped_hatch.md +96 -0
  603. package/src/skills/paper-plot/references/bar_paired_delta.md +72 -0
  604. package/src/skills/paper-plot/references/line_confidence_band.md +75 -0
  605. package/src/skills/paper-plot/references/line_loss_with_inset.md +65 -0
  606. package/src/skills/paper-plot/references/line_training_curve.md +44 -0
  607. package/src/skills/paper-plot/references/radar_dual_series.md +59 -0
  608. package/src/skills/paper-plot/references/scatter_broken_axis.md +59 -0
  609. package/src/skills/paper-plot/references/scatter_tsne_cluster.md +72 -0
  610. package/src/skills/paper-plot/scripts/bar_memevolve.py +109 -0
  611. package/src/skills/paper-plot/scripts/bar_spice.py +166 -0
  612. package/src/skills/paper-plot/scripts/line_aime.py +94 -0
  613. package/src/skills/paper-plot/scripts/line_loss_inset.py +157 -0
  614. package/src/skills/paper-plot/scripts/line_selfdistill.py +168 -0
  615. package/src/skills/paper-plot/scripts/radar_dora.py +151 -0
  616. package/src/skills/paper-plot/scripts/scatter_break.py +169 -0
  617. package/src/skills/paper-plot/scripts/scatter_tsne.py +133 -0
  618. package/src/skills/rebuttal/SKILL.md +9 -0
  619. package/src/skills/references/tool-usage-by-stage.md +438 -0
  620. package/src/skills/review/SKILL.md +105 -7
  621. package/src/skills/science/PROVENANCE.md +44 -0
  622. package/src/skills/science/SKILL.md +137 -0
  623. package/src/skills/science/references/artifact-science-tool.md +110 -0
  624. package/src/skills/science/references/claim-type-discipline.md +56 -0
  625. package/src/skills/science/references/domain-index.md +422 -0
  626. package/src/skills/science/references/hpc-via-bash-exec.md +42 -0
  627. package/src/skills/science/references/package-check-playbook.md +64 -0
  628. package/src/skills/science/references/package-index.min.json +3616 -0
  629. package/src/skills/science/references/packages/abinit.md +80 -0
  630. package/src/skills/science/references/packages/acts.md +73 -0
  631. package/src/skills/science/references/packages/aiida-core.md +80 -0
  632. package/src/skills/science/references/packages/alamode.md +80 -0
  633. package/src/skills/science/references/packages/amuse.md +88 -0
  634. package/src/skills/science/references/packages/anndata.md +88 -0
  635. package/src/skills/science/references/packages/arbor.md +80 -0
  636. package/src/skills/science/references/packages/arc.md +73 -0
  637. package/src/skills/science/references/packages/astropy.md +88 -0
  638. package/src/skills/science/references/packages/astroquery.md +88 -0
  639. package/src/skills/science/references/packages/atomate2.md +80 -0
  640. package/src/skills/science/references/packages/atomsmltr.md +73 -0
  641. package/src/skills/science/references/packages/awkward.md +73 -0
  642. package/src/skills/science/references/packages/batman.md +88 -0
  643. package/src/skills/science/references/packages/biopython.md +88 -0
  644. package/src/skills/science/references/packages/bloqade.md +73 -0
  645. package/src/skills/science/references/packages/brian2.md +73 -0
  646. package/src/skills/science/references/packages/bullet3.md +73 -0
  647. package/src/skills/science/references/packages/calculix.md +80 -0
  648. package/src/skills/science/references/packages/cantera.md +73 -0
  649. package/src/skills/science/references/packages/cavity-md-ipi.md +80 -0
  650. package/src/skills/science/references/packages/ccdproc.md +88 -0
  651. package/src/skills/science/references/packages/celerite2.md +88 -0
  652. package/src/skills/science/references/packages/cellrank.md +73 -0
  653. package/src/skills/science/references/packages/cesm.md +80 -0
  654. package/src/skills/science/references/packages/chemicals.md +73 -0
  655. package/src/skills/science/references/packages/chempy.md +73 -0
  656. package/src/skills/science/references/packages/cirq.md +73 -0
  657. package/src/skills/science/references/packages/coffea.md +73 -0
  658. package/src/skills/science/references/packages/cp2k.md +88 -0
  659. package/src/skills/science/references/packages/custodian.md +80 -0
  660. package/src/skills/science/references/packages/dart.md +73 -0
  661. package/src/skills/science/references/packages/datamol.md +88 -0
  662. package/src/skills/science/references/packages/dd4hep.md +73 -0
  663. package/src/skills/science/references/packages/dealii.md +80 -0
  664. package/src/skills/science/references/packages/deepchem.md +88 -0
  665. package/src/skills/science/references/packages/delphes.md +73 -0
  666. package/src/skills/science/references/packages/devito.md +80 -0
  667. package/src/skills/science/references/packages/dftb.md +88 -0
  668. package/src/skills/science/references/packages/dftd4.md +88 -0
  669. package/src/skills/science/references/packages/dftk-jl.md +80 -0
  670. package/src/skills/science/references/packages/dolfinx.md +80 -0
  671. package/src/skills/science/references/packages/drake.md +73 -0
  672. package/src/skills/science/references/packages/dumux.md +73 -0
  673. package/src/skills/science/references/packages/elk.md +80 -0
  674. package/src/skills/science/references/packages/elmerfem.md +80 -0
  675. package/src/skills/science/references/packages/enzo-e.md +88 -0
  676. package/src/skills/science/references/packages/espresso.md +80 -0
  677. package/src/skills/science/references/packages/exoplanet.md +88 -0
  678. package/src/skills/science/references/packages/fairroot.md +73 -0
  679. package/src/skills/science/references/packages/fbpic.md +80 -0
  680. package/src/skills/science/references/packages/fdtdbath-meep.md +80 -0
  681. package/src/skills/science/references/packages/geant4.md +73 -0
  682. package/src/skills/science/references/packages/geosx.md +80 -0
  683. package/src/skills/science/references/packages/gprmax.md +80 -0
  684. package/src/skills/science/references/packages/gromacs.md +80 -0
  685. package/src/skills/science/references/packages/gwaslab.md +73 -0
  686. package/src/skills/science/references/packages/gz-sim.md +73 -0
  687. package/src/skills/science/references/packages/hail.md +88 -0
  688. package/src/skills/science/references/packages/hiphive.md +80 -0
  689. package/src/skills/science/references/packages/hoomd-blue.md +80 -0
  690. package/src/skills/science/references/packages/itensor.md +73 -0
  691. package/src/skills/science/references/packages/itensors-jl.md +73 -0
  692. package/src/skills/science/references/packages/jdftx.md +73 -0
  693. package/src/skills/science/references/packages/jobflow.md +80 -0
  694. package/src/skills/science/references/packages/kadanoffbaym-jl.md +73 -0
  695. package/src/skills/science/references/packages/kite.md +80 -0
  696. package/src/skills/science/references/packages/kratos.md +80 -0
  697. package/src/skills/science/references/packages/kwant.md +73 -0
  698. package/src/skills/science/references/packages/lammps.md +80 -0
  699. package/src/skills/science/references/packages/lightkurve.md +88 -0
  700. package/src/skills/science/references/packages/limix.md +73 -0
  701. package/src/skills/science/references/packages/maxwelllink.md +80 -0
  702. package/src/skills/science/references/packages/mcdc.md +73 -0
  703. package/src/skills/science/references/packages/meep.md +80 -0
  704. package/src/skills/science/references/packages/mfem.md +80 -0
  705. package/src/skills/science/references/packages/mitgcm.md +73 -0
  706. package/src/skills/science/references/packages/modflow6.md +73 -0
  707. package/src/skills/science/references/packages/molecool.md +73 -0
  708. package/src/skills/science/references/packages/mom6.md +73 -0
  709. package/src/skills/science/references/packages/moose.md +80 -0
  710. package/src/skills/science/references/packages/mpas-model.md +73 -0
  711. package/src/skills/science/references/packages/mujoco.md +73 -0
  712. package/src/skills/science/references/packages/mumax3.md +73 -0
  713. package/src/skills/science/references/packages/nekrs.md +80 -0
  714. package/src/skills/science/references/packages/nessi.md +73 -0
  715. package/src/skills/science/references/packages/nest-simulator.md +73 -0
  716. package/src/skills/science/references/packages/netket.md +73 -0
  717. package/src/skills/science/references/packages/neuron.md +73 -0
  718. package/src/skills/science/references/packages/nextflow.md +88 -0
  719. package/src/skills/science/references/packages/nwchem.md +88 -0
  720. package/src/skills/science/references/packages/openbabel.md +88 -0
  721. package/src/skills/science/references/packages/openems.md +80 -0
  722. package/src/skills/science/references/packages/openff-toolkit.md +88 -0
  723. package/src/skills/science/references/packages/openfoam-dev.md +80 -0
  724. package/src/skills/science/references/packages/openmc.md +73 -0
  725. package/src/skills/science/references/packages/openmm.md +80 -0
  726. package/src/skills/science/references/packages/openmoc.md +73 -0
  727. package/src/skills/science/references/packages/openmx.md +80 -0
  728. package/src/skills/science/references/packages/opensees.md +80 -0
  729. package/src/skills/science/references/packages/opensn.md +80 -0
  730. package/src/skills/science/references/packages/opm-simulators.md +73 -0
  731. package/src/skills/science/references/packages/oqupy.md +73 -0
  732. package/src/skills/science/references/packages/packmol.md +80 -0
  733. package/src/skills/science/references/packages/palabos.md +80 -0
  734. package/src/skills/science/references/packages/parflow.md +80 -0
  735. package/src/skills/science/references/packages/pennylane.md +88 -0
  736. package/src/skills/science/references/packages/perceval.md +73 -0
  737. package/src/skills/science/references/packages/phono3py.md +73 -0
  738. package/src/skills/science/references/packages/phonopy.md +73 -0
  739. package/src/skills/science/references/packages/photutils.md +88 -0
  740. package/src/skills/science/references/packages/picongpu.md +80 -0
  741. package/src/skills/science/references/packages/plink-ng.md +88 -0
  742. package/src/skills/science/references/packages/precice.md +73 -0
  743. package/src/skills/science/references/packages/psc.md +80 -0
  744. package/src/skills/science/references/packages/psi4.md +88 -0
  745. package/src/skills/science/references/packages/pybinding.md +73 -0
  746. package/src/skills/science/references/packages/pyfr.md +80 -0
  747. package/src/skills/science/references/packages/pyhf.md +73 -0
  748. package/src/skills/science/references/packages/pyiron_base.md +80 -0
  749. package/src/skills/science/references/packages/pylcp.md +73 -0
  750. package/src/skills/science/references/packages/pylith.md +80 -0
  751. package/src/skills/science/references/packages/pynbody.md +88 -0
  752. package/src/skills/science/references/packages/pysam.md +88 -0
  753. package/src/skills/science/references/packages/pyscf.md +88 -0
  754. package/src/skills/science/references/packages/q-e.md +73 -0
  755. package/src/skills/science/references/packages/qibo.md +73 -0
  756. package/src/skills/science/references/packages/qiskit.md +73 -0
  757. package/src/skills/science/references/packages/quantica-jl.md +73 -0
  758. package/src/skills/science/references/packages/quantumoptics-jl.md +73 -0
  759. package/src/skills/science/references/packages/quimb.md +73 -0
  760. package/src/skills/science/references/packages/qulacs.md +73 -0
  761. package/src/skills/science/references/packages/qutip.md +73 -0
  762. package/src/skills/science/references/packages/rdkit.md +88 -0
  763. package/src/skills/science/references/packages/rmg-py.md +73 -0
  764. package/src/skills/science/references/packages/root.md +73 -0
  765. package/src/skills/science/references/packages/scanpy.md +88 -0
  766. package/src/skills/science/references/packages/scikit-allel.md +88 -0
  767. package/src/skills/science/references/packages/scikit-bio.md +88 -0
  768. package/src/skills/science/references/packages/scqubits.md +73 -0
  769. package/src/skills/science/references/packages/scuff-em.md +80 -0
  770. package/src/skills/science/references/packages/scvi-tools.md +73 -0
  771. package/src/skills/science/references/packages/seissol.md +73 -0
  772. package/src/skills/science/references/packages/sfepy.md +80 -0
  773. package/src/skills/science/references/packages/sisl.md +73 -0
  774. package/src/skills/science/references/packages/smilei.md +80 -0
  775. package/src/skills/science/references/packages/snakemake.md +88 -0
  776. package/src/skills/science/references/packages/specfem3d-globe.md +80 -0
  777. package/src/skills/science/references/packages/specutils.md +88 -0
  778. package/src/skills/science/references/packages/spglib.md +80 -0
  779. package/src/skills/science/references/packages/squidpy.md +88 -0
  780. package/src/skills/science/references/packages/starry.md +88 -0
  781. package/src/skills/science/references/packages/strawberryfields.md +73 -0
  782. package/src/skills/science/references/packages/su2.md +80 -0
  783. package/src/skills/science/references/packages/sunny-jl.md +73 -0
  784. package/src/skills/science/references/packages/sw4.md +73 -0
  785. package/src/skills/science/references/packages/swift.md +88 -0
  786. package/src/skills/science/references/packages/tdnegf.md +73 -0
  787. package/src/skills/science/references/packages/tenpy.md +73 -0
  788. package/src/skills/science/references/packages/thermo.md +73 -0
  789. package/src/skills/science/references/packages/tkwant.md +73 -0
  790. package/src/skills/science/references/packages/tvb-root.md +73 -0
  791. package/src/skills/science/references/packages/uproot5.md +73 -0
  792. package/src/skills/science/references/packages/vampire.md +80 -0
  793. package/src/skills/science/references/packages/wannier_tools.md +73 -0
  794. package/src/skills/science/references/packages/warpx.md +80 -0
  795. package/src/skills/science/references/packages/wrf.md +73 -0
  796. package/src/skills/science/references/packages/xtb.md +88 -0
  797. package/src/skills/science/references/packages/yt.md +73 -0
  798. package/src/skills/science/references/science-task-brief-template.md +71 -0
  799. package/src/skills/scout/SKILL.md +83 -425
  800. package/src/skills/scout/references/literature-scout-template.md +5 -24
  801. package/src/skills/scout/references/operational-guidance.md +191 -0
  802. package/src/skills/scout/references/paper-triage-playbook.md +11 -35
  803. package/src/skills/write/SKILL.md +744 -1246
  804. package/src/skills/write/references/experiments_analysis_patterns.md +129 -0
  805. package/src/skills/write/references/oral_package_patterns.md +252 -0
  806. package/src/skills/write/references/oral_writing_principles.md +291 -0
  807. package/src/skills/write/references/section_rewrite_checklist.md +234 -0
  808. package/src/tui/dist/app/AppContainer.js +1314 -27
  809. package/src/tui/dist/components/Composer.js +26 -1
  810. package/src/tui/dist/components/ConfigScreen.js +2 -1
  811. package/src/tui/dist/components/InputPrompt.js +25 -9
  812. package/src/tui/dist/components/MainContent.js +18 -3
  813. package/src/tui/dist/components/QuestScreen.js +3 -2
  814. package/src/tui/dist/components/UtilityScreen.js +37 -0
  815. package/src/tui/dist/hooks/useSafeInput.js +10 -0
  816. package/src/tui/dist/index.js +13 -1
  817. package/src/tui/dist/layouts/DefaultAppLayout.js +11 -8
  818. package/src/tui/dist/lib/api.js +89 -1
  819. package/src/tui/package.json +1 -1
  820. package/src/ui/dist/assets/{AnalysisPlugin-DnSm0GZn.js → AnalysisPlugin-CA94NGmI.js} +1 -1
  821. package/src/ui/dist/assets/CliPlugin-DHBzphZU.js +79 -0
  822. package/src/ui/dist/assets/CodeEditorPlugin-BOFwD2rn.js +2 -0
  823. package/src/ui/dist/assets/{CodeViewerPlugin-itb0tltR.js → CodeViewerPlugin-CqDpgjik.js} +4 -4
  824. package/src/ui/dist/assets/{DocViewerPlugin-DqKkiCI6.js → DocViewerPlugin-UDBgt8-4.js} +3 -3
  825. package/src/ui/dist/assets/GitCommitViewerPlugin-BmHtZ0bZ.js +6 -0
  826. package/src/ui/dist/assets/{GitDiffViewerPlugin-DxL2ezFG.js → GitDiffViewerPlugin-CAxjNorQ.js} +2 -2
  827. package/src/ui/dist/assets/{GitSnapshotViewer-B_RQm1YZ.js → GitSnapshotViewer-CweA6VON.js} +2 -2
  828. package/src/ui/dist/assets/{ImageViewerPlugin-tHqlXY3n.js → ImageViewerPlugin-C8wHGvGN.js} +5 -5
  829. package/src/ui/dist/assets/LabPlugin-COyyLUol.js +32 -0
  830. package/src/ui/dist/assets/{LatexPlugin-B495DTXC.js → LatexPlugin-BQjAaA5J.js} +4 -4
  831. package/src/ui/dist/assets/{MarkdownViewerPlugin-DG28-61B.js → MarkdownViewerPlugin-Dy1NE2dI.js} +3 -3
  832. package/src/ui/dist/assets/{MarketplacePlugin-BiOGT-Kj.js → MarketplacePlugin-DMIZtEJ2.js} +2 -2
  833. package/src/ui/dist/assets/NotebookEditor-CFHMq_Qt.js +91 -0
  834. package/src/ui/dist/assets/{NotebookEditor-CVsj8h_T.js → NotebookEditor-WFyd8Ybt.js} +23 -23
  835. package/src/ui/dist/assets/{PdfLoader-CASDQmxJ.js → PdfLoader-CLE5u5TS.js} +3 -3
  836. package/src/ui/dist/assets/{PdfMarkdownPlugin-BFhwoKsY.js → PdfMarkdownPlugin-_iNK_H83.js} +1 -1
  837. package/src/ui/dist/assets/PdfViewerPlugin-DgWsbInT.js +22 -0
  838. package/src/ui/dist/assets/SearchPlugin-DrZmn5iw.js +11 -0
  839. package/src/ui/dist/assets/{TextViewerPlugin-CB4DYfWO.js → TextViewerPlugin-D1-T3aC7.js} +4 -4
  840. package/src/ui/dist/assets/branding/runner-claude.svg +107 -0
  841. package/src/ui/dist/assets/branding/runner-codex.svg +10 -0
  842. package/src/ui/dist/assets/branding/runner-kimi.svg +14 -0
  843. package/src/ui/dist/assets/branding/runner-opencode.svg +7 -0
  844. package/src/ui/dist/assets/cli-store-CoZ-x5Ip.js +1 -0
  845. package/src/ui/dist/assets/{code-DLC6G24T.js → code-DbsmSd3Y.js} +1 -1
  846. package/src/ui/dist/assets/file-diff-panel-DsvyRz47.js +1 -0
  847. package/src/ui/dist/assets/{wrap-text-CwMn-iqb.js → file-jump-queue-DeQBikaw.js} +3 -3
  848. package/src/ui/dist/assets/{file-socket-Cu4Qln7Y.js → file-socket-DA5XIx88.js} +1 -1
  849. package/src/ui/dist/assets/fonts/ds-fonts.css +50 -4
  850. package/src/ui/dist/assets/images/deepxiv/register-guide.png +0 -0
  851. package/src/ui/dist/assets/index-39vY9LmZ.js +1 -0
  852. package/src/ui/dist/assets/{index-wQ7RIIRd.js → index-BsO46tJA.js} +1 -1
  853. package/src/ui/dist/assets/index-CHzJ2xtB.js +3530 -0
  854. package/src/ui/dist/assets/index-DH-zxoZ3.css +33 -0
  855. package/src/ui/dist/assets/{plugin-notebook-HbW2K-1c.js → plugin-notebook-JRhysCqj.js} +2 -2
  856. package/src/ui/dist/assets/{project-sync-CsX08Qno.js → project-sync-DPmWKmKD.js} +1 -1
  857. package/src/ui/dist/assets/{zoom-out-R-GWEhzS.js → zoom-out-DAukFWen.js} +3 -3
  858. package/src/ui/dist/index.html +3 -3
  859. package/src/skills/analysis-campaign/references/artifact-orchestration.md +0 -58
  860. package/src/skills/baseline/references/memory-playbook.md +0 -40
  861. package/src/skills/baseline/references/publishable-baseline-package.md +0 -30
  862. package/src/skills/write/references/outline-evidence-contract-example.md +0 -107
  863. package/src/skills/write/references/paper-experiment-matrix-template.md +0 -131
  864. package/src/skills/write/references/paper-section-playbook.md +0 -64
  865. package/src/skills/write/references/reviewer-first-writing.md +0 -64
  866. package/src/skills/write/references/revision-checklist.md +0 -70
  867. package/src/skills/write/references/section-contracts.md +0 -82
  868. package/src/skills/write/references/sentence-level-proofing.md +0 -49
  869. package/src/ui/dist/assets/AiManusChatView-COFACy7V.js +0 -204
  870. package/src/ui/dist/assets/CliPlugin-CvwCmDQ5.js +0 -109
  871. package/src/ui/dist/assets/CodeEditorPlugin-cOqSa0xq.js +0 -2
  872. package/src/ui/dist/assets/GitCommitViewerPlugin-DVgNHBCS.js +0 -1
  873. package/src/ui/dist/assets/LabCopilotPanel-ClMbq5Yu.js +0 -14
  874. package/src/ui/dist/assets/LabPlugin-L_SuE8ow.js +0 -22
  875. package/src/ui/dist/assets/NotebookEditor-C-4Kt1p9.js +0 -81
  876. package/src/ui/dist/assets/PdfViewerPlugin-DcOzU9vd.js +0 -17
  877. package/src/ui/dist/assets/SearchPlugin-CHj7M58O.js +0 -16
  878. package/src/ui/dist/assets/VNCViewer-CjlbyCB3.js +0 -11
  879. package/src/ui/dist/assets/bot-CFkZY-JP.js +0 -6
  880. package/src/ui/dist/assets/chevron-up-Dq5ofbht.js +0 -6
  881. package/src/ui/dist/assets/file-content-Dv4LoZec.js +0 -1
  882. package/src/ui/dist/assets/file-diff-panel-Denq-lC3.js +0 -1
  883. package/src/ui/dist/assets/file-jump-queue-DA-SdG__.js +0 -1
  884. package/src/ui/dist/assets/git-commit-horizontal-BUh6G52n.js +0 -6
  885. package/src/ui/dist/assets/image-B9HUUddG.js +0 -6
  886. package/src/ui/dist/assets/index-B2B1sg-M.js +0 -1
  887. package/src/ui/dist/assets/index-Cgla8biy.css +0 -33
  888. package/src/ui/dist/assets/index-DRyx7vAc.js +0 -1
  889. package/src/ui/dist/assets/index-Gbl53BNp.js +0 -2496
  890. package/src/ui/dist/assets/pdf-effect-queue-ZtnHFCAi.js +0 -6
  891. package/src/ui/dist/assets/popover-DL6h35vr.js +0 -1
  892. package/src/ui/dist/assets/select-DvmXt1yY.js +0 -11
  893. package/src/ui/dist/assets/sigma-7jpXazui.js +0 -6
  894. package/src/ui/dist/assets/trash-xA7kFt8i.js +0 -11
  895. package/src/ui/dist/assets/useCliAccess-DsMwDjOp.js +0 -1
  896. package/src/ui/dist/assets/useFileDiffOverlay-FuhcnKiw.js +0 -1
@@ -0,0 +1,211 @@
1
+ id: aisb.t3.023_guidedembed
2
+ name: 'GSTransform: Guided Space Transformation for Instruction-Following Text Embeddings'
3
+ version: 0.1.0
4
+ one_line: Lightweight transformation of pretrained text embeddings to follow user
5
+ instructions without corpus re-encoding, achieving 6-300x speedup.
6
+ task_description: 'This packaged benchmark covers GSTransform, a novel instruction-following
7
+ text embedding framework. Unlike prior approaches that require re-encoding the entire
8
+ corpus for each instruction (O(m×n) forward passes), GSTransform transforms pre-computed
9
+ embeddings in real time using a lightweight model. The two-stage pipeline consists
10
+ of: (1) Instruction-based Label Construction where an LLM generates instruction-aware
11
+ labels from a small sampled corpus, and (2) Label-guided Embedding Transformation
12
+ where a transformation model maps generic embeddings to an instruction-aligned semantic
13
+ space using contrastive and reconstruction losses. The benchmark evaluates on three
14
+ instruction-awareness tasks—clustering, semantic textual similarity (STS), and triplet
15
+ alignment—across nine real-world datasets. Evaluation requires configuring the dataset
16
+ in data.py, the instruction in label_construction.py, and an OpenAI API key in util.py.
17
+
18
+ '
19
+ task_mode: experiment_driven
20
+ requires_execution: true
21
+ requires_paper: true
22
+ integrity_level: cas_plus_canary
23
+ snapshot_status: runnable
24
+ support_level: advanced
25
+ time_band: 6-24h
26
+ cost_band: medium
27
+ difficulty: medium
28
+ data_access: public
29
+ primary_outputs:
30
+ - v_measure
31
+ - nmi
32
+ - sts_score
33
+ - triplet_score
34
+ - embedding_checkpoint
35
+ launch_profiles:
36
+ - id: quick_check
37
+ label: Quick Check
38
+ description: 'Run the clustering-oriented evaluation route on a prepared embedding
39
+ setup. Skips label construction and training; requires pre-computed embeddings
40
+ and labeled classification results from prior runs.
41
+
42
+ '
43
+ estimated_time: 10-30m
44
+ - id: full_pipeline
45
+ label: Full Pipeline
46
+ description: 'Construct instruction-aware labels using an LLM, train the GSTransform
47
+ transformation model, and run the full packaged evaluation pipeline including
48
+ clustering, STS, and triplet evaluations.
49
+
50
+ '
51
+ estimated_time: 4-12h
52
+ requires_api_key: true
53
+ dataset_download:
54
+ primary_method: direct_archive
55
+ sources:
56
+ - url: https://deepscientist.cc/AISB/023_guidedembed
57
+ archive_type: zip
58
+ notes:
59
+ - Download the paper-23-GuidedEmbed archive
60
+ - Contains pretrained UAE-Large-V1 model under uae_model/
61
+ - Configure dataset path in data.py (line 20) before running
62
+ - Configure instruction in label_construction.py (line 289)
63
+ - Requires OpenAI API key in util.py (line 8) for label construction
64
+ credential_requirements:
65
+ mode: api_key_required
66
+ items:
67
+ - name: openai_api_key
68
+ description: OpenAI API key for LLM-based label construction and taxonomy generation
69
+ scope: label_construction.py
70
+ notes:
71
+ - API key only needed during label_construction stage
72
+ - LLM calls are limited to a small annotated subset (5000 samples recommended)
73
+ - Cost is minimal compared to full corpus re-encoding approaches
74
+ resources:
75
+ minimum:
76
+ cpu_cores: 8
77
+ ram_gb: 32
78
+ disk_gb: 50
79
+ gpu_count: 1
80
+ gpu_vram_gb: 12
81
+ recommended:
82
+ cpu_cores: 16
83
+ ram_gb: 64
84
+ disk_gb: 100
85
+ gpu_count: 1
86
+ gpu_vram_gb: 24
87
+ environment:
88
+ python: '3.9'
89
+ cuda: '11.8'
90
+ pytorch: 2.0.0
91
+ flash_attn: null
92
+ key_packages:
93
+ - name: torch
94
+ version: '>=2.0'
95
+ - name: numpy
96
+ version: '>=1.24'
97
+ - name: scikit-learn
98
+ version: '>=1.3'
99
+ - name: sentence-transformers
100
+ version: '>=2.2'
101
+ - name: openai
102
+ version: '>=1.0'
103
+ notes:
104
+ - Full dependency set in bundled requirements.txt
105
+ - UAE-Large-V1 pretrained encoder bundled in uae_model/ directory
106
+ - CUDA required for efficient embedding transformation and evaluation
107
+ risk_flags:
108
+ - api_cost
109
+ - disk_io_bottleneck
110
+ risk_notes:
111
+ - API key consumption limited to label construction phase only
112
+ - Embedding cache (embeddings.pkl) can be large; ensure adequate disk space
113
+ - Training uses contrastive loss with margin; adjust MARGIN (default 1.0) in train.py
114
+ for stability
115
+ recommended_when: 'Use this benchmark when you need a compact NLP training task around
116
+ instruction-aware embeddings with clustering, STS, or triplet evaluation metrics.
117
+ Ideal for exploring efficient alternatives to full corpus re-encoding methods like
118
+ Instructor or InBedder.
119
+
120
+ '
121
+ not_recommended_when: 'Do not use this if you need a very large multimodal benchmark,
122
+ full LLM finetuning workflows, or evaluation scenarios without any API access. This
123
+ benchmark requires at least one GPU and an OpenAI API key for the label construction
124
+ pipeline.
125
+
126
+ '
127
+ paper:
128
+ title: 'Don''t Reinvent the Wheel: Efficient Instruction-Following Text Embedding
129
+ based on Guided Space Transformation'
130
+ venue: ACL 2025 Oral
131
+ year: 2025
132
+ url: https://arxiv.org/abs/2505.24754
133
+ code_url: https://github.com/YingchaojieFeng/GSTransform
134
+ download:
135
+ url: https://github.com/ResearAI/DeepScientist/releases/download/aisb-v0.0.1/aisb.t3.023_guidedembed.zip
136
+ archive_type: zip
137
+ local_dir_name: paper-23-GuidedEmbed
138
+ provider: github_release
139
+ repo: ResearAI/DeepScientist
140
+ tag: aisb-v0.0.1
141
+ asset_name: aisb.t3.023_guidedembed.zip
142
+ sha256: 69f98b98d8db4889e5b7063ee007a61b2d823f1ac03114c784e6f02418cc7640
143
+ size_bytes: 1470047
144
+ display:
145
+ palette_seed: sage-indigo-embed
146
+ art_style: semantic-minimal
147
+ accent_priority: medium
148
+ image_path: ../image/023_aisb.t3.023_guidedembed.jpg
149
+ metric_evidence:
150
+ v_measure:
151
+ origin: run_eval_pipeline.py
152
+ source_ref: FINAL V-MEASURE output line
153
+ evaluation_protocol: clustering_with_oracle_labels
154
+ nmi:
155
+ origin: evaluate_cluster.py
156
+ source_ref: sklearn.metrics.normalized_mutual_info_score
157
+ evaluation_protocol: kmeans_clustering
158
+ sts_score:
159
+ origin: evaluate_sts.py
160
+ source_ref: cosine_similarity_comparison
161
+ evaluation_protocol: semantic_textual_similarity_benchmark
162
+ triplet_score:
163
+ origin: evaluate_triplet.py
164
+ source_ref: triplet_accuracy_evaluation
165
+ evaluation_protocol: instruction_aware_triplet_alignment
166
+ execution_notes:
167
+ pipeline_order:
168
+ - step: data.py
169
+ description: Load and preprocess dataset; configure DATASET_PATH
170
+ - step: label_construction.py
171
+ description: Generate instruction-aware taxonomy and labels using LLM
172
+ - step: train.py
173
+ description: Train GSTransform model on labeled embeddings
174
+ - step: evaluate_cluster.py
175
+ description: Evaluate on clustering task (primary V-measure, NMI)
176
+ - step: evaluate_sts.py
177
+ description: Evaluate on semantic textual similarity task
178
+ - step: evaluate_triplet.py
179
+ description: Evaluate on triplet alignment task
180
+ checkpoints:
181
+ - path: cache/model.pth
182
+ description: Trained GSTransform transformation model
183
+ - path: cache/embeddings.pkl
184
+ description: Pre-computed and cached base embeddings
185
+ - path: cache/classifications_xxx.json
186
+ description: LLM-generated instruction-aware labels
187
+ capability_tags:
188
+ - research_code_optimization
189
+ - text_embeddings
190
+ - representation_learning
191
+ - instruction_following
192
+ - nlp
193
+ - efficient_inference
194
+ - contrastive_learning
195
+ aisb_direction: T3
196
+ track_fit:
197
+ - paper_track
198
+ - benchmark_track
199
+ commercial:
200
+ annual_fee: null
201
+ metadata:
202
+ base_encoder: WhereIsAI/UAE-Large-V1
203
+ transformation_output_dim: 128
204
+ training_batch_size: 512
205
+ default_epochs: 500
206
+ default_learning_rate: 0.0001
207
+ default_margin: 1.0
208
+ patience: 50
209
+ n_train_samples: 5000
210
+ datasets_evaluated: 9
211
+ speedup_factor: 6-300x
@@ -0,0 +1,189 @@
1
+ id: aisb.t3.023_guidedembed
2
+ name: 'GSTransform:面向指令跟随的文本嵌入引导式空间变换'
3
+ version: 0.1.0
4
+ one_line: 轻量级预训练文本嵌入变换,无需语料库重编码即可跟随用户指令,实现6-300倍加速。
5
+ task_description: '本打包基准测试涵盖GSTransform,一个新颖的指令跟随文本嵌入框架。与先前需要为每条指令重编码整个语料库的方法(O(m×n)次前向传播)不同,GSTransform使用轻量级模型实时变换预计算嵌入。两阶段流程包括:(1)基于指令的标签构建,其中LLM从小规模采样语料库生成指令感知标签;(2)标签引导的嵌入变换,其中变换模型使用对比损失和重构损失将通用嵌入映射到指令对齐的语义空间。基准测试在三个指令感知任务上评估——聚类、语义文本相似度(STS)和三元组对齐——涵盖九个真实世界数据集。评估需要在data.py中配置数据集,在label_construction.py中配置指令,在util.py中配置OpenAI API密钥。
6
+
7
+ '
8
+ task_mode: experiment_driven
9
+ requires_execution: true
10
+ requires_paper: true
11
+ integrity_level: cas_plus_canary
12
+ snapshot_status: runnable
13
+ support_level: advanced
14
+ time_band: 6-24h
15
+ cost_band: medium
16
+ difficulty: medium
17
+ data_access: public
18
+ primary_outputs:
19
+ - v_measure
20
+ - nmi
21
+ - sts_score
22
+ - triplet_score
23
+ - embedding_checkpoint
24
+ launch_profiles:
25
+ - id: quick_check
26
+ label: 快速检查
27
+ description: '在已准备好的嵌入设置上运行面向聚类的评估流程。跳过标签构建和训练阶段,需要来自先前运行预计算的嵌入和带标签的分类结果。
28
+
29
+ '
30
+ estimated_time: 10-30m
31
+ - id: full_pipeline
32
+ label: 完整流程
33
+ description: '使用LLM构建指令感知标签,训练GSTransform变换模型,并运行完整的打包评估流程,包括聚类、STS和三元组评估。
34
+
35
+ '
36
+ estimated_time: 4-12h
37
+ requires_api_key: true
38
+ dataset_download:
39
+ primary_method: direct_archive
40
+ sources:
41
+ - url: https://deepscientist.cc/AISB/023_guidedembed
42
+ archive_type: zip
43
+ notes:
44
+ - 下载paper-23-GuidedEmbed压缩包
45
+ - 包含u ae_model/目录下的预训练UAE-Large-V1模型
46
+ - 运行前在data.py(第20行)配置数据集路径
47
+ - 在label_construction.py(第289行)配置指令
48
+ - 在util.py(第8行)需要OpenAI API密钥用于标签构建
49
+ credential_requirements:
50
+ mode: api_key_required
51
+ items:
52
+ - name: openai_api_key
53
+ description: 用于LLM标签构建和分类生成的OpenAI API密钥
54
+ scope: label_construction.py
55
+ notes:
56
+ - API密钥仅在标签构建阶段需要
57
+ - LLM调用仅限于小规模标注子集(建议5000个样本)
58
+ - 相比完整语料库重编码方法,成本极低
59
+ resources:
60
+ minimum:
61
+ cpu_cores: 8
62
+ ram_gb: 32
63
+ disk_gb: 50
64
+ gpu_count: 1
65
+ gpu_vram_gb: 12
66
+ recommended:
67
+ cpu_cores: 16
68
+ ram_gb: 64
69
+ disk_gb: 100
70
+ gpu_count: 1
71
+ gpu_vram_gb: 24
72
+ environment:
73
+ python: '3.9'
74
+ cuda: '11.8'
75
+ pytorch: 2.0.0
76
+ flash_attn: null
77
+ key_packages:
78
+ - name: torch
79
+ version: '>=2.0'
80
+ - name: numpy
81
+ version: '>=1.24'
82
+ - name: scikit-learn
83
+ version: '>=1.3'
84
+ - name: sentence-transformers
85
+ version: '>=2.2'
86
+ - name: openai
87
+ version: '>=1.0'
88
+ notes:
89
+ - 完整依赖项在打包的requirements.txt中
90
+ - UAE-Large-V1预训练编码器打包在u ae_model/目录中
91
+ - 需要CUDA以支持高效的嵌入变换和评估
92
+ risk_flags:
93
+ - api_cost
94
+ - disk_io_bottleneck
95
+ risk_notes:
96
+ - API密钥消耗仅限于标签构建阶段
97
+ - 嵌入缓存(embeddings.pkl)可能较大,请确保有足够的磁盘空间
98
+ - 训练使用带边缘的对比损失;可在train.py中调整MARGIN(默认1.0)以提高稳定性
99
+ recommended_when: '当需要一个围绕指令感知嵌入的紧凑NLP训练任务时使用本基准测试,包含聚类、STS或三元组评估指标。非常适合探索Instructor或InBedder等完整语料库重编码方法的高效替代方案。
100
+
101
+ '
102
+ not_recommended_when: '如果需要超大规模多模态基准测试、完整LLM微调工作流或完全没有API访问权限的评估场景,请勿使用本基准测试。本基准测试至少需要一个GPU和OpenAI API密钥用于标签构建流程。
103
+
104
+ '
105
+ paper:
106
+ title: 'Don''t Reinvent the Wheel: Efficient Instruction-Following Text Embedding
107
+ based on Guided Space Transformation'
108
+ venue: ACL 2025 Oral
109
+ year: 2025
110
+ url: https://arxiv.org/abs/2505.24754
111
+ code_url: https://github.com/YingchaojieFeng/GSTransform
112
+ download:
113
+ url: https://github.com/ResearAI/DeepScientist/releases/download/aisb-v0.0.1/aisb.t3.023_guidedembed.zip
114
+ archive_type: zip
115
+ local_dir_name: paper-23-GuidedEmbed
116
+ provider: github_release
117
+ repo: ResearAI/DeepScientist
118
+ tag: aisb-v0.0.1
119
+ asset_name: aisb.t3.023_guidedembed.zip
120
+ sha256: 69f98b98d8db4889e5b7063ee007a61b2d823f1ac03114c784e6f02418cc7640
121
+ size_bytes: 1470047
122
+ display:
123
+ palette_seed: sage-indigo-embed
124
+ art_style: semantic-minimal
125
+ accent_priority: medium
126
+ image_path: ../image/023_aisb.t3.023_guidedembed.jpg
127
+ metric_evidence:
128
+ v_measure:
129
+ origin: run_eval_pipeline.py
130
+ source_ref: FINAL V-MEASURE output line
131
+ evaluation_protocol: clustering_with_oracle_labels
132
+ nmi:
133
+ origin: evaluate_cluster.py
134
+ source_ref: sklearn.metrics.normalized_mutual_info_score
135
+ evaluation_protocol: kmeans_clustering
136
+ sts_score:
137
+ origin: evaluate_sts.py
138
+ source_ref: cosine_similarity_comparison
139
+ evaluation_protocol: semantic_textual_similarity_benchmark
140
+ triplet_score:
141
+ origin: evaluate_triplet.py
142
+ source_ref: triplet_accuracy_evaluation
143
+ evaluation_protocol: instruction_aware_triplet_alignment
144
+ execution_notes:
145
+ pipeline_order:
146
+ - step: data.py
147
+ description: 加载和预处理数据集;配置DATASET_PATH
148
+ - step: label_construction.py
149
+ description: 使用LLM生成指令感知分类和标签
150
+ - step: train.py
151
+ description: 在带标签的嵌入上训练GSTransform模型
152
+ - step: evaluate_cluster.py
153
+ description: 在聚类任务上评估(主要V-measure、NMI)
154
+ - step: evaluate_sts.py
155
+ description: 在语义文本相似度任务上评估
156
+ - step: evaluate_triplet.py
157
+ description: 在三元组对齐任务上评估
158
+ checkpoints:
159
+ - path: cache/model.pth
160
+ description: 训练好的GSTransform变换模型
161
+ - path: cache/embeddings.pkl
162
+ description: 预计算并缓存的基础嵌入
163
+ - path: cache/classifications_xxx.json
164
+ description: LLM生成的指令感知标签
165
+ capability_tags:
166
+ - research_code_optimization
167
+ - text_embeddings
168
+ - representation_learning
169
+ - instruction_following
170
+ - nlp
171
+ - efficient_inference
172
+ - contrastive_learning
173
+ aisb_direction: T3
174
+ track_fit:
175
+ - paper_track
176
+ - benchmark_track
177
+ commercial:
178
+ annual_fee: null
179
+ metadata:
180
+ base_encoder: WhereIsAI/UAE-Large-V1
181
+ transformation_output_dim: 128
182
+ training_batch_size: 512
183
+ default_epochs: 500
184
+ default_learning_rate: 0.0001
185
+ default_margin: 1.0
186
+ patience: 50
187
+ n_train_samples: 5000
188
+ datasets_evaluated: 9
189
+ speedup_factor: 6-300x
@@ -0,0 +1,148 @@
1
+ id: aisb.t3.024_outputcentric
2
+ name: Enhancing Automated Interpretability with Output-Centric Feature Descriptions
3
+ version: 0.1.0
4
+ one_line: Two-faceted interpretability evaluation pipeline describing LLM features
5
+ through input-activation and output-behavior lenses.
6
+ task_description: 'This packaged benchmark covers an interpretability evaluation pipeline
7
+ that describes features through their output behavior. The task characterizes latent
8
+ features in large language models by what they do at the model output level, proposing
9
+ output-centric methods (VocabProj, TokenChange) alongside the standard MaxAct approach.
10
+ The benchmark evaluates feature descriptions along two complementary dimensions:
11
+ input-based evaluation (how accurately descriptions identify activating inputs)
12
+ and output-based evaluation (how effectively descriptions capture causal impact
13
+ on model generation). Experiments span neuron-aligned and sparse autoencoder (SAE)
14
+ features from residual and MLP layers across multiple LLMs including GPT-small,
15
+ LLaMA-3.1-8B, and Gemma-2-2B.
16
+
17
+ '
18
+ task_mode: evaluation_driven
19
+ requires_execution: true
20
+ requires_paper: true
21
+ integrity_level: cas_plus_canary
22
+ snapshot_status: runnable
23
+ support_level: turnkey
24
+ time_band: 1-2h
25
+ cost_band: low
26
+ difficulty: medium
27
+ data_access: public
28
+ primary_outputs:
29
+ - output_based_evaluation_score
30
+ - input_based_evaluation_score
31
+ - feature_descriptions
32
+ launch_profiles:
33
+ - id: notebook_eval
34
+ label: Notebook Eval
35
+ description: Run the packaged feature_descriptions_pipeline.ipynb notebook for output-centric
36
+ feature description evaluation across all model variants.
37
+ dataset_download:
38
+ primary_method: direct_archive
39
+ sources:
40
+ - url: https://deepscientist.cc/AISB/024_outputcentric
41
+ type: primary_archive
42
+ notes:
43
+ - Archive contains pre-computed feature descriptions in descriptions/ directory
44
+ - Includes CSV files for gpt-small, llama-3.1-8b, llama-3.1-8b-it, and gemma-2-2b
45
+ - CPU-only execution feasible for minimum route
46
+ credential_requirements:
47
+ mode: optional_api_keys
48
+ items:
49
+ - name: HF_TOKEN
50
+ description: Hugging Face token for model access
51
+ required: false
52
+ - name: GAI_KEY
53
+ description: Gemini API key for description generation
54
+ required: false
55
+ notes:
56
+ - OPENAI key expected in environment variable if used
57
+ - Evaluation can proceed without API keys using pre-computed descriptions
58
+ resources:
59
+ minimum:
60
+ cpu_cores: 8
61
+ ram_gb: 16
62
+ disk_gb: 20
63
+ gpu_count: 0
64
+ gpu_vram_gb: 0
65
+ notes: CPU-only execution supported for minimum route
66
+ recommended:
67
+ cpu_cores: 16
68
+ ram_gb: 32
69
+ disk_gb: 80
70
+ gpu_count: 1
71
+ gpu_vram_gb: 16
72
+ notes: GPU acceleration recommended for full pipeline evaluation
73
+ environment:
74
+ python: '3.10'
75
+ cuda: '11.8'
76
+ pytorch: 2.1.0
77
+ flash_attn: null
78
+ key_packages:
79
+ - transformers
80
+ - torch
81
+ - pandas
82
+ - numpy
83
+ - jupyter
84
+ notes:
85
+ - See bundled README/requirements.txt for full dependency set
86
+ - CPU-only execution plausible for minimum route
87
+ - Additional packages may be required for SAE feature evaluation
88
+ risk_flags:
89
+ - metric_provisional
90
+ - api_key_optional
91
+ risk_notes:
92
+ - Static code audit confirms executable anchors for all staged metrics
93
+ - No benchmark execution was performed in packaging pass
94
+ - Runtime execution required before trusting metric values
95
+ - API keys optional; evaluation can use pre-computed feature descriptions
96
+ recommended_when: 'Use this benchmark when conducting interpretability research on
97
+ LLM features, developing automated description pipelines, comparing input-centric
98
+ versus output-centric description methods, evaluating SAE features, or assessing
99
+ feature description quality for steering applications. Ideal for benchmarking description
100
+ faithfulness across both input-activation and output-behavior dimensions.
101
+
102
+ '
103
+ not_recommended_when: 'Do not use this benchmark if you require a large-scale supervised
104
+ training benchmark, dense multimodal data processing, or retraining-focused workflows.
105
+ Not suitable for tasks requiring dense annotation pipelines or non-LLM model interpretability.
106
+
107
+ '
108
+ paper:
109
+ title: Enhancing Automated Interpretability with Output-Centric Feature Descriptions
110
+ authors:
111
+ - Yoav Gur-Arieh
112
+ - Roy Mayan
113
+ - Chen Agassy
114
+ - Atticus Geiger
115
+ - Mor Geva
116
+ venue: arXiv preprint
117
+ year: 2025
118
+ eprint: '2501.08319'
119
+ primary_class: cs.CL
120
+ url: https://arxiv.org/abs/2501.08319
121
+ code_url: https://github.com/yoavgur/Feature-Descriptions
122
+ download:
123
+ url: https://github.com/ResearAI/DeepScientist/releases/download/aisb-v0.0.1/aisb.t3.024_outputcentric.zip
124
+ archive_type: zip
125
+ local_dir_name: paper-24-OutputCentric
126
+ provider: github_release
127
+ repo: ResearAI/DeepScientist
128
+ tag: aisb-v0.0.1
129
+ asset_name: aisb.t3.024_outputcentric.zip
130
+ sha256: 98fbc91e990b4a6c440895a60947c3f09069c8e5d5cce6283f925f6f27876614
131
+ size_bytes: 3484257
132
+ display:
133
+ palette_seed: ivory-rose-neuron
134
+ art_style: interpretability-atlas
135
+ accent_priority: medium
136
+ image_path: ../image/024_aisb.t3.024_outputcentric.jpg
137
+ capability_tags:
138
+ - research_code_optimization
139
+ - mechanistic_interpretability
140
+ - automated_evaluation
141
+ - large_language_models
142
+ - feature_analysis
143
+ - sparse_autoencoders
144
+ - model_steering
145
+ aisb_direction: T3
146
+ track_fit:
147
+ - paper_track
148
+ - benchmark_track
@@ -0,0 +1,131 @@
1
+ id: aisb.t3.024_outputcentric
2
+ name: 通过以输出为中心的特征描述增强自动化可解释性
3
+ version: 0.1.0
4
+ one_line: 双角度可解释性评估流程,从输入激活和输出行为两个视角描述LLM特征。
5
+ task_description: '本基准测试包含一个可解释性评估流程,通过输出行为来描述特征。该任务通过模型输出层面描述大型语言模型中的潜在特征,提出了以输出为中心的方法(VocabProj、TokenChange)以及标准的MaxAct方法。基准测试从两个互补维度评估特征描述:基于输入的评估(描述如何准确识别激活输入)和基于输出的评估(描述如何有效捕捉对模型生成的因果影响)。实验涵盖来自残差层和MLP层的神经元对齐特征和稀疏自编码器(SAE)特征,涉及GPT-small、LLaMA-3.1-8B和Gemma-2-2B等多个LLM。
6
+
7
+ '
8
+ task_mode: evaluation_driven
9
+ requires_execution: true
10
+ requires_paper: true
11
+ integrity_level: cas_plus_canary
12
+ snapshot_status: runnable
13
+ support_level: turnkey
14
+ time_band: 1-2h
15
+ cost_band: low
16
+ difficulty: medium
17
+ data_access: public
18
+ primary_outputs:
19
+ - output_based_evaluation_score
20
+ - input_based_evaluation_score
21
+ - feature_descriptions
22
+ launch_profiles:
23
+ - id: notebook_eval
24
+ label: 笔记本评估
25
+ description: 运行打包好的feature_descriptions_pipeline.ipynb笔记本,对所有模型变体进行以输出为中心的特征描述评估。
26
+ dataset_download:
27
+ primary_method: direct_archive
28
+ sources:
29
+ - url: https://deepscientist.cc/AISB/024_outputcentric
30
+ type: primary_archive
31
+ notes:
32
+ - 压缩包包含descriptions/目录下的预计算特征描述
33
+ - 包含gpt-small、llama-3.1-8b、llama-3.1-8b-it和gemma-2-2b的CSV文件
34
+ - 最低配置可仅使用CPU执行
35
+ credential_requirements:
36
+ mode: optional_api_keys
37
+ items:
38
+ - name: HF_TOKEN
39
+ description: Hugging Face令牌,用于模型访问
40
+ required: false
41
+ - name: GAI_KEY
42
+ description: Gemini API密钥,用于生成描述
43
+ required: false
44
+ notes:
45
+ - 如需使用则应在环境变量中配置OPENAI密钥
46
+ - 无需API密钥即可使用预计算描述进行评估
47
+ resources:
48
+ minimum:
49
+ cpu_cores: 8
50
+ ram_gb: 16
51
+ disk_gb: 20
52
+ gpu_count: 0
53
+ gpu_vram_gb: 0
54
+ notes: 最低配置支持纯CPU执行
55
+ recommended:
56
+ cpu_cores: 16
57
+ ram_gb: 32
58
+ disk_gb: 80
59
+ gpu_count: 1
60
+ gpu_vram_gb: 16
61
+ notes: 建议使用GPU加速以完成完整流程评估
62
+ environment:
63
+ python: '3.10'
64
+ cuda: '11.8'
65
+ pytorch: 2.1.0
66
+ flash_attn: null
67
+ key_packages:
68
+ - transformers
69
+ - torch
70
+ - pandas
71
+ - numpy
72
+ - jupyter
73
+ notes:
74
+ - 详见捆绑的README/requirements.txt获取完整依赖列表
75
+ - 最低配置可仅使用CPU执行
76
+ - SAE特征评估可能需要额外包
77
+ risk_flags:
78
+ - metric_provisional
79
+ - api_key_optional
80
+ risk_notes:
81
+ - 静态代码审查确认所有阶段性指标均有可执行锚点
82
+ - 打包过程中未执行基准测试
83
+ - 使用前需进行运行时执行验证指标值
84
+ - API密钥可选;可使用预计算特征描述进行评估
85
+ recommended_when: '当您进行LLM特征可解释性研究、开发自动化描述流程、比较输入中心与输出中心描述方法、评估SAE特征,或为 steering 应用评估特征描述质量时,可以使用此基准测试。该基准测试非常适合在输入激活和输出行为两个维度上基准测试描述的忠实度。
86
+
87
+ '
88
+ not_recommended_when: '如果您需要大规模监督训练基准测试、密集多模态数据处理或以重训练为重点的工作流程,请勿使用此基准测试。不适用于需要密集标注流程或非LLM模型可解释性的任务。
89
+
90
+ '
91
+ paper:
92
+ title: Enhancing Automated Interpretability with Output-Centric Feature Descriptions
93
+ authors:
94
+ - Yoav Gur-Arieh
95
+ - Roy Mayan
96
+ - Chen Agassy
97
+ - Atticus Geiger
98
+ - Mor Geva
99
+ venue: arXiv preprint
100
+ year: 2025
101
+ eprint: '2501.08319'
102
+ primary_class: cs.CL
103
+ url: https://arxiv.org/abs/2501.08319
104
+ code_url: https://github.com/yoavgur/Feature-Descriptions
105
+ download:
106
+ url: https://github.com/ResearAI/DeepScientist/releases/download/aisb-v0.0.1/aisb.t3.024_outputcentric.zip
107
+ archive_type: zip
108
+ local_dir_name: paper-24-OutputCentric
109
+ provider: github_release
110
+ repo: ResearAI/DeepScientist
111
+ tag: aisb-v0.0.1
112
+ asset_name: aisb.t3.024_outputcentric.zip
113
+ sha256: 98fbc91e990b4a6c440895a60947c3f09069c8e5d5cce6283f925f6f27876614
114
+ size_bytes: 3484257
115
+ display:
116
+ palette_seed: ivory-rose-neuron
117
+ art_style: interpretability-atlas
118
+ accent_priority: medium
119
+ image_path: ../image/024_aisb.t3.024_outputcentric.jpg
120
+ capability_tags:
121
+ - research_code_optimization
122
+ - mechanistic_interpretability
123
+ - automated_evaluation
124
+ - large_language_models
125
+ - feature_analysis
126
+ - sparse_autoencoders
127
+ - model_steering
128
+ aisb_direction: T3
129
+ track_fit:
130
+ - paper_track
131
+ - benchmark_track