@researai/deepscientist 1.5.16 → 1.6.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/AGENTS.md +309 -130
- package/AISB/catalog/aisb.b1.agentic_coding.yaml +244 -0
- package/AISB/catalog/aisb.b10.climate_earth.yaml +235 -0
- package/AISB/catalog/aisb.b11.model_efficiency.yaml +231 -0
- package/AISB/catalog/aisb.b12.embodied_ai.yaml +238 -0
- package/AISB/catalog/aisb.b2.agent_systems.yaml +229 -0
- package/AISB/catalog/aisb.b3.self_evolving_rl.yaml +237 -0
- package/AISB/catalog/aisb.b4.lm_reasoning.yaml +240 -0
- package/AISB/catalog/aisb.b5.math_proof.yaml +235 -0
- package/AISB/catalog/aisb.b6.research_process.yaml +243 -0
- package/AISB/catalog/aisb.b7.multimodal_fusion.yaml +232 -0
- package/AISB/catalog/aisb.b8.lifesci_drug.yaml +275 -0
- package/AISB/catalog/aisb.b9.material_science.yaml +237 -0
- package/AISB/catalog/aisb.t3.001_savvy.yaml +159 -0
- package/AISB/catalog/aisb.t3.001_savvy.zh.yaml +121 -0
- package/AISB/catalog/aisb.t3.002_pinet.yaml +189 -0
- package/AISB/catalog/aisb.t3.002_pinet.zh.yaml +130 -0
- package/AISB/catalog/aisb.t3.004_decentralattn.yaml +184 -0
- package/AISB/catalog/aisb.t3.004_decentralattn.zh.yaml +153 -0
- package/AISB/catalog/aisb.t3.005_tsae.yaml +193 -0
- package/AISB/catalog/aisb.t3.005_tsae.zh.yaml +139 -0
- package/AISB/catalog/aisb.t3.006_physense.yaml +194 -0
- package/AISB/catalog/aisb.t3.006_physense.zh.yaml +118 -0
- package/AISB/catalog/aisb.t3.007_reasoningiqa.yaml +169 -0
- package/AISB/catalog/aisb.t3.007_reasoningiqa.zh.yaml +133 -0
- package/AISB/catalog/aisb.t3.008_meanflows.yaml +188 -0
- package/AISB/catalog/aisb.t3.008_meanflows.zh.yaml +140 -0
- package/AISB/catalog/aisb.t3.009_scoremissing.yaml +179 -0
- package/AISB/catalog/aisb.t3.009_scoremissing.zh.yaml +119 -0
- package/AISB/catalog/aisb.t3.010_suitabilityfilter.yaml +221 -0
- package/AISB/catalog/aisb.t3.010_suitabilityfilter.zh.yaml +141 -0
- package/AISB/catalog/aisb.t3.011_osd.yaml +206 -0
- package/AISB/catalog/aisb.t3.011_osd.zh.yaml +163 -0
- package/AISB/catalog/aisb.t3.012_efficientqat.yaml +206 -0
- package/AISB/catalog/aisb.t3.012_efficientqat.zh.yaml +159 -0
- package/AISB/catalog/aisb.t3.013_appl.yaml +152 -0
- package/AISB/catalog/aisb.t3.013_appl.zh.yaml +126 -0
- package/AISB/catalog/aisb.t3.014_piguard.yaml +207 -0
- package/AISB/catalog/aisb.t3.014_piguard.zh.yaml +164 -0
- package/AISB/catalog/aisb.t3.015_frspec.yaml +209 -0
- package/AISB/catalog/aisb.t3.015_frspec.zh.yaml +163 -0
- package/AISB/catalog/aisb.t3.016_mathfusion.yaml +166 -0
- package/AISB/catalog/aisb.t3.016_mathfusion.zh.yaml +145 -0
- package/AISB/catalog/aisb.t3.017_multimodalglp.yaml +171 -0
- package/AISB/catalog/aisb.t3.017_multimodalglp.zh.yaml +122 -0
- package/AISB/catalog/aisb.t3.018_cotsynth.yaml +206 -0
- package/AISB/catalog/aisb.t3.018_cotsynth.zh.yaml +162 -0
- package/AISB/catalog/aisb.t3.019_dyscaleut.yaml +211 -0
- package/AISB/catalog/aisb.t3.019_dyscaleut.zh.yaml +148 -0
- package/AISB/catalog/aisb.t3.020_aristotle.yaml +173 -0
- package/AISB/catalog/aisb.t3.020_aristotle.zh.yaml +119 -0
- package/AISB/catalog/aisb.t3.021_tokenrecycling.yaml +160 -0
- package/AISB/catalog/aisb.t3.021_tokenrecycling.zh.yaml +129 -0
- package/AISB/catalog/aisb.t3.022_chainofreasoning.yaml +204 -0
- package/AISB/catalog/aisb.t3.022_chainofreasoning.zh.yaml +161 -0
- package/AISB/catalog/aisb.t3.023_guidedembed.yaml +211 -0
- package/AISB/catalog/aisb.t3.023_guidedembed.zh.yaml +189 -0
- package/AISB/catalog/aisb.t3.024_outputcentric.yaml +148 -0
- package/AISB/catalog/aisb.t3.024_outputcentric.zh.yaml +131 -0
- package/AISB/catalog/aisb.t3.025_deeper.yaml +143 -0
- package/AISB/catalog/aisb.t3.025_deeper.zh.yaml +116 -0
- package/AISB/catalog/aisb.t3.026_gartkg.yaml +195 -0
- package/AISB/catalog/aisb.t3.026_gartkg.zh.yaml +127 -0
- package/AISB/catalog/aisb.t3.027_citeeval.yaml +182 -0
- package/AISB/catalog/aisb.t3.027_citeeval.zh.yaml +135 -0
- package/AISB/catalog/aisb.t3.028_sbam.yaml +206 -0
- package/AISB/catalog/aisb.t3.028_sbam.zh.yaml +166 -0
- package/AISB/catalog/aisb.t3.029_cdqgeoembed.yaml +224 -0
- package/AISB/catalog/aisb.t3.029_cdqgeoembed.zh.yaml +142 -0
- package/AISB/catalog/aisb.t3.030_processrm.yaml +211 -0
- package/AISB/catalog/aisb.t3.030_processrm.zh.yaml +166 -0
- package/AISB/catalog/aisb.t3.031_circuitstability.yaml +172 -0
- package/AISB/catalog/aisb.t3.031_circuitstability.zh.yaml +134 -0
- package/AISB/catalog/aisb.t3.032_ptsolver.yaml +169 -0
- package/AISB/catalog/aisb.t3.032_ptsolver.zh.yaml +135 -0
- package/AISB/catalog/aisb.t3.033_gcse.yaml +144 -0
- package/AISB/catalog/aisb.t3.033_gcse.zh.yaml +126 -0
- package/AISB/catalog/aisb.t3.034_ensemblewm.yaml +183 -0
- package/AISB/catalog/aisb.t3.034_ensemblewm.zh.yaml +146 -0
- package/AISB/catalog/aisb.t3.035_moralvalueswa.yaml +207 -0
- package/AISB/catalog/aisb.t3.035_moralvalueswa.zh.yaml +165 -0
- package/AISB/catalog/aisb.t3.036_weakstrongpref.yaml +210 -0
- package/AISB/catalog/aisb.t3.036_weakstrongpref.zh.yaml +194 -0
- package/AISB/catalog/aisb.t3.037_dementiamask.yaml +172 -0
- package/AISB/catalog/aisb.t3.037_dementiamask.zh.yaml +132 -0
- package/AISB/catalog/aisb.t3.038_tinysam.yaml +284 -0
- package/AISB/catalog/aisb.t3.038_tinysam.zh.yaml +240 -0
- package/AISB/catalog/aisb.t3.039_calf.yaml +224 -0
- package/AISB/catalog/aisb.t3.039_calf.zh.yaml +194 -0
- package/AISB/catalog/aisb.t3.040_graniteguardian.yaml +199 -0
- package/AISB/catalog/aisb.t3.040_graniteguardian.zh.yaml +174 -0
- package/AISB/catalog/aisb.t3.041_amdm.yaml +149 -0
- package/AISB/catalog/aisb.t3.041_amdm.zh.yaml +137 -0
- package/AISB/catalog/aisb.t3.042_xpatch.yaml +216 -0
- package/AISB/catalog/aisb.t3.042_xpatch.zh.yaml +182 -0
- package/AISB/catalog/aisb.t3.043_vhm.yaml +268 -0
- package/AISB/catalog/aisb.t3.043_vhm.zh.yaml +193 -0
- package/AISB/catalog/aisb.t3.044_rgvi.yaml +224 -0
- package/AISB/catalog/aisb.t3.044_rgvi.zh.yaml +176 -0
- package/AISB/catalog/aisb.t3.045_pslstm.yaml +203 -0
- package/AISB/catalog/aisb.t3.045_pslstm.zh.yaml +179 -0
- package/AISB/catalog/aisb.t3.046_nonstatts.yaml +208 -0
- package/AISB/catalog/aisb.t3.046_nonstatts.zh.yaml +194 -0
- package/AISB/catalog/aisb.t3.047_timepfn.yaml +156 -0
- package/AISB/catalog/aisb.t3.047_timepfn.zh.yaml +124 -0
- package/AISB/catalog/aisb.t3.048_proxyspex.yaml +148 -0
- package/AISB/catalog/aisb.t3.048_proxyspex.zh.yaml +125 -0
- package/AISB/catalog/aisb.t3.049_hogwildinference.yaml +183 -0
- package/AISB/catalog/aisb.t3.049_hogwildinference.zh.yaml +138 -0
- package/AISB/catalog/aisb.t3.050_causalpfn.yaml +214 -0
- package/AISB/catalog/aisb.t3.050_causalpfn.zh.yaml +190 -0
- package/AISB/catalog/aisb.t3.051_flashtp.yaml +169 -0
- package/AISB/catalog/aisb.t3.051_flashtp.zh.yaml +124 -0
- package/AISB/catalog/aisb.t3.052_nsdiff.yaml +155 -0
- package/AISB/catalog/aisb.t3.052_nsdiff.zh.yaml +138 -0
- package/AISB/catalog/aisb.t3.053_k2vae.yaml +158 -0
- package/AISB/catalog/aisb.t3.053_k2vae.zh.yaml +132 -0
- package/AISB/catalog/aisb.t3.054_timebase.yaml +178 -0
- package/AISB/catalog/aisb.t3.054_timebase.zh.yaml +158 -0
- package/AISB/catalog/aisb.t3.055_csbrain.yaml +238 -0
- package/AISB/catalog/aisb.t3.055_csbrain.zh.yaml +184 -0
- package/AISB/catalog/aisb.t3.056_infosam.yaml +224 -0
- package/AISB/catalog/aisb.t3.056_infosam.zh.yaml +189 -0
- package/AISB/catalog/aisb.t3.057_mdreid.yaml +129 -0
- package/AISB/catalog/aisb.t3.057_mdreid.zh.yaml +117 -0
- package/AISB/catalog/aisb.t3.058_mindglitch.yaml +171 -0
- package/AISB/catalog/aisb.t3.058_mindglitch.zh.yaml +145 -0
- package/AISB/catalog/aisb.t3.059_selfsupervised.yaml +154 -0
- package/AISB/catalog/aisb.t3.059_selfsupervised.zh.yaml +125 -0
- package/AISB/catalog/aisb.t3.060_iaggad.yaml +121 -0
- package/AISB/catalog/aisb.t3.060_iaggad.zh.yaml +100 -0
- package/AISB/catalog/aisb.t3.061_hsgkn.yaml +136 -0
- package/AISB/catalog/aisb.t3.061_hsgkn.zh.yaml +113 -0
- package/AISB/catalog/aisb.t3.062_visionts.yaml +237 -0
- package/AISB/catalog/aisb.t3.062_visionts.zh.yaml +216 -0
- package/AISB/catalog/aisb.t3.063_tsrag.yaml +162 -0
- package/AISB/catalog/aisb.t3.063_tsrag.zh.yaml +138 -0
- package/AISB/catalog/aisb.t3.064_pir.yaml +221 -0
- package/AISB/catalog/aisb.t3.064_pir.zh.yaml +197 -0
- package/AISB/catalog/aisb.t3.065_proteinbinding.yaml +234 -0
- package/AISB/catalog/aisb.t3.065_proteinbinding.zh.yaml +167 -0
- package/AISB/catalog/aisb.t3.066_tropicalattention.yaml +267 -0
- package/AISB/catalog/aisb.t3.066_tropicalattention.zh.yaml +229 -0
- package/AISB/catalog/aisb.t3.067_kanad.yaml +193 -0
- package/AISB/catalog/aisb.t3.067_kanad.zh.yaml +167 -0
- package/AISB/catalog/aisb.t3.068_sempo.yaml +187 -0
- package/AISB/catalog/aisb.t3.068_sempo.zh.yaml +148 -0
- package/AISB/catalog/aisb.t3.069_treehfd.yaml +129 -0
- package/AISB/catalog/aisb.t3.069_treehfd.zh.yaml +111 -0
- package/AISB/catalog/aisb.t3.070_certifiedunlearning.yaml +224 -0
- package/AISB/catalog/aisb.t3.070_certifiedunlearning.zh.yaml +171 -0
- package/AISB/catalog/aisb.t3.071_neuralmjd.yaml +142 -0
- package/AISB/catalog/aisb.t3.071_neuralmjd.zh.yaml +120 -0
- package/AISB/catalog/aisb.t3.072_fedgmt.yaml +181 -0
- package/AISB/catalog/aisb.t3.072_fedgmt.zh.yaml +158 -0
- package/AISB/catalog/aisb.t3.073_rld.yaml +161 -0
- package/AISB/catalog/aisb.t3.073_rld.zh.yaml +129 -0
- package/AISB/catalog/aisb.t3.074_lsvi.yaml +163 -0
- package/AISB/catalog/aisb.t3.074_lsvi.zh.yaml +129 -0
- package/AISB/catalog/aisb.t3.075_treeslicedentropy.yaml +201 -0
- package/AISB/catalog/aisb.t3.075_treeslicedentropy.zh.yaml +148 -0
- package/AISB/catalog/aisb.t3.076_aanet.yaml +169 -0
- package/AISB/catalog/aisb.t3.076_aanet.zh.yaml +129 -0
- package/AISB/catalog/aisb.t3.077_cmnn.yaml +199 -0
- package/AISB/catalog/aisb.t3.077_cmnn.zh.yaml +165 -0
- package/AISB/catalog/aisb.t3.078_conformalanomaly.yaml +146 -0
- package/AISB/catalog/aisb.t3.078_conformalanomaly.zh.yaml +117 -0
- package/AISB/catalog/aisb.t3.079_dpfkmeans.yaml +131 -0
- package/AISB/catalog/aisb.t3.079_dpfkmeans.zh.yaml +104 -0
- package/AISB/catalog/aisb.t3.080_latentscorereweight.yaml +169 -0
- package/AISB/catalog/aisb.t3.080_latentscorereweight.zh.yaml +123 -0
- package/AISB/catalog/aisb.t3.081_qmamba.yaml +150 -0
- package/AISB/catalog/aisb.t3.081_qmamba.zh.yaml +117 -0
- package/AISB/catalog/aisb.t3.082_onlinellmrouting.yaml +160 -0
- package/AISB/catalog/aisb.t3.082_onlinellmrouting.zh.yaml +133 -0
- package/AISB/catalog/aisb.t3.083_starformer.yaml +178 -0
- package/AISB/catalog/aisb.t3.083_starformer.zh.yaml +140 -0
- package/AISB/catalog/aisb.t3.084_ift.yaml +139 -0
- package/AISB/catalog/aisb.t3.084_ift.zh.yaml +111 -0
- package/AISB/catalog/aisb.t3.085_neuralsurv.yaml +183 -0
- package/AISB/catalog/aisb.t3.085_neuralsurv.zh.yaml +143 -0
- package/AISB/catalog/aisb.t3.086_stella.yaml +197 -0
- package/AISB/catalog/aisb.t3.086_stella.zh.yaml +142 -0
- package/AISB/catalog/aisb.t3.087_moses.yaml +167 -0
- package/AISB/catalog/aisb.t3.087_moses.zh.yaml +132 -0
- package/AISB/catalog/aisb.t3.088_channelnorm.yaml +140 -0
- package/AISB/catalog/aisb.t3.088_channelnorm.zh.yaml +109 -0
- package/AISB/catalog/aisb.t3.089_causalvelocity.yaml +730 -0
- package/AISB/catalog/aisb.t3.089_causalvelocity.zh.yaml +668 -0
- package/AISB/catalog/aisb.t3.090_rstib.yaml +144 -0
- package/AISB/catalog/aisb.t3.090_rstib.zh.yaml +109 -0
- package/AISB/catalog/aisb.t3.091_timeawarecausal.yaml +132 -0
- package/AISB/catalog/aisb.t3.091_timeawarecausal.zh.yaml +107 -0
- package/AISB/catalog/aisb.t3.092_kmeanslocalopt.yaml +138 -0
- package/AISB/catalog/aisb.t3.092_kmeanslocalopt.zh.yaml +110 -0
- package/AISB/catalog/aisb.t3.093_fedwmsam.yaml +134 -0
- package/AISB/catalog/aisb.t3.093_fedwmsam.zh.yaml +106 -0
- package/AISB/catalog/aisb.t3.094_boundre.yaml +147 -0
- package/AISB/catalog/aisb.t3.094_boundre.zh.yaml +114 -0
- package/AISB/catalog/aisb.t3.095_fastfeaturecp.yaml +153 -0
- package/AISB/catalog/aisb.t3.095_fastfeaturecp.zh.yaml +118 -0
- package/AISB/catalog/aisb.t3.096_m3svm.yaml +189 -0
- package/AISB/catalog/aisb.t3.096_m3svm.zh.yaml +149 -0
- package/AISB/catalog/aisb.t3.097_wassersteintl.yaml +212 -0
- package/AISB/catalog/aisb.t3.097_wassersteintl.zh.yaml +169 -0
- package/AISB/catalog/aisb.t3.098_xmahalanobis.yaml +171 -0
- package/AISB/catalog/aisb.t3.098_xmahalanobis.zh.yaml +127 -0
- package/AISB/catalog/aisb.t3.099_ollalanding.yaml +248 -0
- package/AISB/catalog/aisb.t3.099_ollalanding.zh.yaml +182 -0
- package/AISB/catalog/aisb.t3.100_invmissingdata.yaml +179 -0
- package/AISB/catalog/aisb.t3.100_invmissingdata.zh.yaml +150 -0
- package/AISB/catalog/aisb.t3.101_acia.yaml +164 -0
- package/AISB/catalog/aisb.t3.101_acia.zh.yaml +109 -0
- package/AISB/catalog/aisb.t3.102_stochasticff.yaml +178 -0
- package/AISB/catalog/aisb.t3.102_stochasticff.zh.yaml +130 -0
- package/AISB/catalog/aisb.t3.103_qdcp.yaml +150 -0
- package/AISB/catalog/aisb.t3.103_qdcp.zh.yaml +116 -0
- package/AISB/catalog/aisb.t3.104_balancedactiveinf.yaml +137 -0
- package/AISB/catalog/aisb.t3.104_balancedactiveinf.zh.yaml +104 -0
- package/AISB/catalog/aisb.t3.105_binaryclasseval.yaml +161 -0
- package/AISB/catalog/aisb.t3.105_binaryclasseval.zh.yaml +130 -0
- package/AISB/image/001_aisb.t3.001_savvy.jpg +0 -0
- package/AISB/image/002_aisb.t3.002_pinet.jpg +0 -0
- package/AISB/image/003_aisb.t3.003_dmsqd.jpg +0 -0
- package/AISB/image/004_aisb.t3.004_decentralattn.jpg +0 -0
- package/AISB/image/005_aisb.t3.005_tsae.jpg +0 -0
- package/AISB/image/006_aisb.t3.006_physense.jpg +0 -0
- package/AISB/image/007_aisb.t3.007_reasoningiqa.jpg +0 -0
- package/AISB/image/008_aisb.t3.008_meanflows.jpg +0 -0
- package/AISB/image/009_aisb.t3.009_scoremissing.jpg +0 -0
- package/AISB/image/010_aisb.t3.010_suitabilityfilter.jpg +0 -0
- package/AISB/image/011_aisb.t3.011_osd.jpg +0 -0
- package/AISB/image/012_aisb.t3.012_efficientqat.jpg +0 -0
- package/AISB/image/013_aisb.t3.013_appl.jpg +0 -0
- package/AISB/image/014_aisb.t3.014_piguard.jpg +0 -0
- package/AISB/image/015_aisb.t3.015_frspec.jpg +0 -0
- package/AISB/image/016_aisb.t3.016_mathfusion.jpg +0 -0
- package/AISB/image/017_aisb.t3.017_multimodalglp.jpg +0 -0
- package/AISB/image/018_aisb.t3.018_cotsynth.jpg +0 -0
- package/AISB/image/019_aisb.t3.019_dyscaleut.jpg +0 -0
- package/AISB/image/020_aisb.t3.020_aristotle.jpg +0 -0
- package/AISB/image/021_aisb.t3.021_tokenrecycling.jpg +0 -0
- package/AISB/image/022_aisb.t3.022_chainofreasoning.jpg +0 -0
- package/AISB/image/023_aisb.t3.023_guidedembed.jpg +0 -0
- package/AISB/image/024_aisb.t3.024_outputcentric.jpg +0 -0
- package/AISB/image/025_aisb.t3.025_deeper.jpg +0 -0
- package/AISB/image/026_aisb.t3.026_gartkg.jpg +0 -0
- package/AISB/image/027_aisb.t3.027_citeeval.jpg +0 -0
- package/AISB/image/028_aisb.t3.028_sbam.jpg +0 -0
- package/AISB/image/029_aisb.t3.029_cdqgeoembed.jpg +0 -0
- package/AISB/image/030_aisb.t3.030_processrm.jpg +0 -0
- package/AISB/image/031_aisb.t3.031_circuitstability.jpg +0 -0
- package/AISB/image/032_aisb.t3.032_ptsolver.jpg +0 -0
- package/AISB/image/033_aisb.t3.033_gcse.jpg +0 -0
- package/AISB/image/034_aisb.t3.034_ensemblewm.jpg +0 -0
- package/AISB/image/035_aisb.t3.035_moralvalueswa.jpg +0 -0
- package/AISB/image/036_aisb.t3.036_weakstrongpref.jpg +0 -0
- package/AISB/image/037_aisb.t3.037_dementiamask.jpg +0 -0
- package/AISB/image/038_aisb.t3.038_tinysam.jpg +0 -0
- package/AISB/image/039_aisb.t3.039_calf.jpg +0 -0
- package/AISB/image/040_aisb.t3.040_graniteguardian.jpg +0 -0
- package/AISB/image/041_aisb.t3.041_amdm.jpg +0 -0
- package/AISB/image/042_aisb.t3.042_xpatch.jpg +0 -0
- package/AISB/image/043_aisb.t3.043_vhm.jpg +0 -0
- package/AISB/image/044_aisb.t3.044_rgvi.jpg +0 -0
- package/AISB/image/045_aisb.t3.045_pslstm.jpg +0 -0
- package/AISB/image/046_aisb.t3.046_nonstatts.jpg +0 -0
- package/AISB/image/047_aisb.t3.047_timepfn.jpg +0 -0
- package/AISB/image/048_aisb.t3.048_proxyspex.jpg +0 -0
- package/AISB/image/049_aisb.t3.049_hogwildinference.jpg +0 -0
- package/AISB/image/050_aisb.t3.050_causalpfn.jpg +0 -0
- package/AISB/image/051_aisb.t3.051_flashtp.jpg +0 -0
- package/AISB/image/052_aisb.t3.052_nsdiff.jpg +0 -0
- package/AISB/image/053_aisb.t3.053_k2vae.jpg +0 -0
- package/AISB/image/054_aisb.t3.054_timebase.jpg +0 -0
- package/AISB/image/055_aisb.t3.055_csbrain.jpg +0 -0
- package/AISB/image/056_aisb.t3.056_infosam.jpg +0 -0
- package/AISB/image/057_aisb.t3.057_mdreid.jpg +0 -0
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Use this reference when the `idea` stage needs broad, history-aware literature search rather than a shallow scan of the last few papers.
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The goal is to move from a field map to a lineage view and then to the real unresolved breakpoints.
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## 1. Build a field map first
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Before deep reading, map the landscape:
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- major subproblems
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- representative paradigms
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- common datasets and metrics
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- recurring disputes or failure modes
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For a broad topic, start with:
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Do not start with deep reading of one narrow recent cluster and mistake that for the field.
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## 2. Find the three paper roles
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Only reading recent papers makes it too easy to confuse "currently fashionable" with "structurally important".
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## 3. Use citation chaining aggressively
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History reconstruction should use both:
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- forward citation chaining
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- who later cited the key paper?
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- how was the problem originally defined?
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- which assumptions survived over time?
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- which assumptions changed?
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- which assumptions were never seriously tested?
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If DeepXiv is available under the runtime contract, prefer it for broad paper-centric discovery, citation expansion, and shortlist triage.
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If DeepXiv is unavailable, use search engines, citation expansion, arXiv discovery, and open-web search directly.
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## 4. Keep a lineage table, not just paper titles
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For the strongest `20-40` papers in the active neighborhood, track at least:
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- method and data
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- main conclusion
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- explicit limitation
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- implicit limitation you detect
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This table is often where the real idea appears:
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- overworked problems
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- default assumptions with weak evidence
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- conclusions tied to one narrow data regime
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- real gaps versus fake gaps
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## 5. Search broadly but with structure
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Use a broad search ladder:
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1. direct neighborhood
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- same task, dataset, and metric
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2. failure-mode neighborhood
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- same bottleneck, breakdown pattern, or contradiction
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3. mechanism neighborhood
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- same core idea in the same or adjacent tasks
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4. cross-domain neighborhood
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- structurally similar solutions from nearby fields
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Use DeepXiv when available for broad paper-centric discovery.
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If it is not available, use search engines directly and keep the same breadth target.
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Broad search does not mean random search.
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It means wide enough to expose the main paradigms, history, and unresolved contradictions before selecting a route.
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## 6. Distinguish review intents
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Use the right review style for the current need:
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- narrative review
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- good for understanding and viewpoint formation
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- scoping review
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- good for broad boundary mapping and gap discovery
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- systematic review
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- good for tighter, reproducible evidence synthesis on a focused question
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The `idea` stage usually begins closer to field mapping and scoping, then narrows toward targeted comparison once the frontier becomes smaller.
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## 7. Stop when the breakpoints are clear
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The history pass is good enough when you can answer:
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- what the field now treats as the mainline
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- what its strongest assumptions are
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- where the main contradictions, blind spots, or failure regions remain
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- why the current candidate still matters despite the strongest nearby work
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If these are still unclear, do not rush into novelty claims.
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Use this reference when choosing the final idea and preparing the handoff to `experiment`.
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## 1.
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## 1. Value and feasibility screen
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Before promotion, score each serious candidate on a compact `1-5` scale:
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- importance
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- novelty
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- feasibility
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- verifiability
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- paper or report potential
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- failure value
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- breakthrough or boundary-changing potential
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Also check the FINER-style screen explicitly:
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- `F`
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- feasible with current data, compute, codebase, and schedule
|
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- `I`
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- interesting enough that the field would care
|
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- `N`
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- novel in a meaningful sense relative to the strongest nearby work
|
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- `E`
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- ethically acceptable and not obviously high-risk
|
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- `R`
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- relevant to an important bottleneck rather than a decorative tweak
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If the route scores poorly on both value and feasibility, do not promote it merely because it feels exciting.
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If the route is only a small local tweak, require an explicit justification for why a more differentiated route did not survive.
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## 2. Lightweight quality gate
|
|
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7
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Score the final serious candidate on a `0/1/2` scale:
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@@ -31,20 +59,41 @@ If total `< 7/10`, do not promote the idea yet.
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Also treat these as hard gates before promotion:
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- the literature survey must already durably cover at least `5` and usually `5-10` related and usable papers
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- the survey must show both the strongest direct-field overlap and any adjacent-domain mechanisms that could plausibly subsume or outgrow the candidate
|
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- a pre-idea draft or equivalent durable challenge memo must already exist for the serious surviving candidates, especially the likely winner
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- that draft must explicitly surface hidden assumptions, local-optimum lock-in risk, strongest rejection case, and strongest outside-family alternative
|
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|
- the closest-prior-work comparison must explain why the idea is still needed
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- the selected route must be classified honestly as breakthrough-seeking, clearly differentiated, or incremental-with-justification; default rejection applies to decorative tweaks
|
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- the final selected-idea draft must be ready to carry standard-format citations for the papers actually used
|
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-
##
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## 3. Honest novelty / value labels
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Use these labels explicitly:
|
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72
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|
-
- `novel`: closest prior work does not already make the same mechanism-plus-claim combination
|
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- `novel`: closest prior work does not already make the same mechanism-plus-claim combination, and the route is materially more than a cosmetic delta from the baseline
|
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74
|
- `incremental but valuable`: overlap exists, but the new setting, evidence package, or failure-mode resolution is still meaningful
|
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- `not sufficiently differentiated`: closest prior work already dominates the idea
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Only the first two are eligible for promotion.
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Even then, prefer `novel` when it remains feasible.
|
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+
|
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+
## 4. Mechanism and falsification gate
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Before a candidate can be promoted, it should make explicit:
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84
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- core hypothesis
|
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- mechanism sketch
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- strongest falsification experiment
|
|
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+
|
|
88
|
+
The mechanism sketch can be brief, but it must answer:
|
|
89
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+
|
|
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- why should this route work at all?
|
|
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- what part of the current limitation does it change?
|
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- for whom, where, or under what condition should it work or fail?
|
|
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+
|
|
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+
If the mechanism sketch or strongest falsification experiment is still vague, the route is not yet ready.
|
|
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95
|
|
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|
-
##
|
|
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|
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## 5. Handoff fields for experiment
|
|
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97
|
|
|
49
98
|
The selected idea record should include:
|
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|
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@@ -69,7 +118,7 @@ Inside the implementation handoff, also include:
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- `abandon_condition`
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- `strongest_alternative_hypothesis`
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-
##
|
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## 6. Recommended presentation shape
|
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|
Use a compact Pyramid structure:
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@@ -78,14 +127,17 @@ Use a compact Pyramid structure:
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- then the minimal validation plan
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- then a short `References` or `Bibliography` section that cites the survey-stage papers actually used
|
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##
|
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## 7. Promotion gate
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Do not promote a candidate if any of these remain unclear:
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- what exactly is being claimed
|
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- how the claim differs from closest prior work
|
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- what hidden assumption is carrying most of the route
|
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- whether the route only looks best because of incumbent inertia or implementation convenience
|
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- what minimal experiment can refute it
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- which code touchpoints are affected
|
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- what evidence package would later defend it in writing
|
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- which `5-10` surveyed papers actually support the motivation, mechanism, and claim boundary
|
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|
- whether the final idea draft includes proper citation markers plus a standard-format reference list
|
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- why this route deserves promotion over simpler but lower-value tweaks and over more ambitious but still feasible alternatives
|
|
@@ -7,6 +7,7 @@ skill_role: companion
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|
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7
7
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# Intake Audit
|
|
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8
|
|
|
9
9
|
Use this skill when the quest already has meaningful state and the first job is to normalize that state instead of restarting the canonical research loop from zero.
|
|
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|
+
The goal is to recover one trustworthy starting state from messy existing assets, not to re-audit everything forever.
|
|
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11
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## Interaction discipline
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@@ -23,6 +24,12 @@ Use this skill when the quest already has meaningful state and the first job is
|
|
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23
24
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- **For git inspection or maintenance inside the current quest repository or worktree, prefer `artifact.git(...)` before raw shell git commands.**
|
|
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25
|
- **Use shell execution only when durable quest files, artifacts, and memory are insufficient; do not bypass durable state just because shell feels faster.**
|
|
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26
|
|
|
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|
+
## Three-layer todo contract
|
|
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|
+
|
|
29
|
+
- treat quest-root `plan.md` as the top-level research map whose next active node must become explicit after intake
|
|
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|
+
- if the audit is multi-step, use workspace `PLAN.md` as the current intake-node contract and `CHECKLIST.md` as the execution frontier
|
|
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|
+
- when the audit resolves the route, update quest-root `plan.md` instead of leaving the recommendation only in a report artifact
|
|
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|
|
26
33
|
## Purpose
|
|
27
34
|
|
|
28
35
|
`intake-audit` is an auxiliary entry skill, not a normal long-running anchor.
|
|
@@ -34,6 +41,9 @@ Its purpose is to answer four questions before deeper work begins:
|
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3. what can be reused directly?
|
|
35
42
|
4. which skill should take over next?
|
|
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43
|
|
|
44
|
+
In practice, `intake-audit` should usually leave behind one authoritative current-board surface.
|
|
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|
+
That board packet exists so later `decision`, `idea`, `experiment`, and `write` passes do not have to reconstruct the active mainline from several partially stale state sources.
|
|
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|
+
|
|
37
47
|
This skill exists because many quests do **not** start from a clean slate.
|
|
38
48
|
Common non-blank starts include:
|
|
39
49
|
|
|
@@ -72,6 +82,8 @@ They are common research entry states.
|
|
|
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- Do not mark an existing experiment as a durable main result unless it is genuinely the main run for an accepted idea line.
|
|
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|
- Do not silently import old drafts, plots, or notes as the active contract if they belong to a different idea line or branch line.
|
|
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|
- Do not lose provenance. If an artifact is reused, record where it came from and why it is trusted enough.
|
|
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|
+
- Do not confuse provenance with manuscript content. User requests, agent decisions, branch/worktree names, command logs, and restart notes are control evidence only unless rewritten into a neutral scientific protocol by `write`.
|
|
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|
+
- Do not import old paper matrices or outline rows as current-method support until legacy-method, comparator, negative-evidence, appendix-only, and latest-method roles are separated.
|
|
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87
|
- If the quest is really a review/revision task, route to `rebuttal` instead of pretending this is a normal fresh paper-writing pass.
|
|
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|
|
|
77
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|
## Typical intake states
|
|
@@ -95,6 +107,14 @@ Also classify every important asset by trust:
|
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|
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- `missing_context`
|
|
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|
|
|
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|
+
Also classify every paper-facing asset by manuscript visibility:
|
|
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|
+
|
|
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|
+
- `main_text_candidate`
|
|
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|
+
- `appendix_or_reproducibility`
|
|
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|
+
- `comparator_or_negative_evidence`
|
|
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|
+
- `reference_only`
|
|
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|
+
- `internal_only`
|
|
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|
+
|
|
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|
## Primary truth sources
|
|
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119
|
|
|
100
120
|
Use, in roughly this order:
|
|
@@ -199,7 +219,24 @@ Then reconcile it with the durable artifact layer:
|
|
|
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|
|
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If the evidence is insufficient for a durable backfill, record that insufficiency explicitly instead of inventing a cleaned-up history.
|
|
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221
|
|
|
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|
-
### 5.
|
|
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|
+
### 5. Compile the current board packet
|
|
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|
+
|
|
224
|
+
Before choosing the next anchor, compress the intake result into one durable current-board packet.
|
|
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|
+
|
|
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|
+
At minimum, make explicit:
|
|
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|
+
|
|
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|
+
- `current_mainline`
|
|
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|
+
- `incumbent`
|
|
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|
+
- `latest_decisive_result`
|
|
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|
+
- `active_blocker`
|
|
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|
+
- `stale_routes_to_ignore`
|
|
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|
+
- `next_decision_scope`
|
|
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|
+
- `budget_class`
|
|
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|
+
|
|
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|
+
The point is not to summarize everything.
|
|
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|
+
The point is to give the next skill one authoritative board surface instead of forcing it to merge branch state, memory, summaries, and artifacts again from scratch.
|
|
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|
+
|
|
239
|
+
### 6. Choose the next anchor
|
|
203
240
|
|
|
204
241
|
After reconciliation, write one durable route decision with `artifact.record(payload={'kind': 'decision', ...})`.
|
|
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|
|
|
@@ -212,7 +249,7 @@ Typical next anchors:
|
|
|
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|
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|
|
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250
|
- the quest is effectively complete or should pause -> `finalize`
|
|
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251
|
|
|
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|
-
###
|
|
252
|
+
### 7. Report and hand off
|
|
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253
|
|
|
217
254
|
At the end of the intake pass, send one threaded `artifact.interact(kind='milestone', ...)` update that says:
|
|
218
255
|
|
|
@@ -224,6 +261,7 @@ At the end of the intake pass, send one threaded `artifact.interact(kind='milest
|
|
|
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|
## Recommended durable outputs
|
|
225
262
|
|
|
226
263
|
- `artifacts/intake/state_audit.md`
|
|
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|
+
- `artifacts/intake/current_board_packet.md`
|
|
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265
|
- `artifacts/intake/recommended_next_step.md`
|
|
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266
|
- one `decision` artifact for the post-audit route
|
|
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|
- one or more repair/backfill artifact calls when justified
|
|
@@ -275,5 +313,8 @@ When the audit concerns a specific existing line, include identifiers when known
|
|
|
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|
- the quest's current state is understandable
|
|
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|
- the trustworthy reusable assets are explicit
|
|
277
315
|
- the untrusted gaps are explicit
|
|
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|
+
- the current board packet is explicit enough that a later skill can continue from one authoritative board surface
|
|
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317
|
- the next anchor is explicit
|
|
279
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|
- the system can continue without pretending the quest started from zero
|
|
319
|
+
|
|
320
|
+
A good intake pass tells the system exactly what state is trusted, what is not, and what runs next.
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## Current Board Packet
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- current_mainline:
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- incumbent:
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- latest_decisive_result:
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- active_blocker:
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- stale_routes_to_ignore:
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- next_decision_scope:
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## Route Recommendation
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- next anchor:
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---
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name: nature-data
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description: >-
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Prepare, audit, or revise Nature-ready Data Availability statements, data repository plans,
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dataset citations, and FAIR metadata checklists for manuscripts. Use when the user asks about
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Nature data availability, research data sharing, repository selection, accession numbers,
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restricted or sensitive data, source data, supplementary datasets, DataCite-style dataset
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references, FAIR metadata for academic publication, or Chinese-to-English data availability
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wording for Chinese-speaking authors preparing Nature-family submissions.
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skill_role: companion
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---
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# Nature Data Availability Skill
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This companion skill is adapted from `Yuan1z0825/nature-skills/tree/main/nature-data`.
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See `UPSTREAM_LICENSE.txt` for the upstream MIT license.
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## DeepScientist integration
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- Follow the shared interaction contract injected by the system prompt.
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- Use this as a focused writing companion inside `write`, `review`, `rebuttal`, or `finalize` when the active issue is Data Availability, source data, repository selection, dataset citation, restricted data, or FAIR metadata.
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- Keep DeepScientist's evidence contract authoritative: draft availability text only from verified data inventory, repository records, artifact paths, or explicit unresolved fields.
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- Do not invent DOIs, accession numbers, repositories, ethics approvals, access committees, licences, embargoes, or data-use conditions.
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Use this skill to turn a manuscript's supporting data into a transparent, Nature-ready data
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availability package: statement text, repository plan, dataset citations, and missing-information
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flags.
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The governing policy layer is Springer Nature / Nature Portfolio data policy. The implementation
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layer is FAIR data practice and DataCite-style citation metadata.
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## Chinese-user operating mode
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When the user writes in Chinese, provides a Chinese manuscript note, or asks for "中文对应",
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"中英对照", "数据可用性声明", "数据获取声明", "原始数据", "数据存储库", or "受限数据":
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- Accept Chinese input naturally, but draft the final submission-ready statement in English unless
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the user explicitly asks for Chinese only.
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- Preserve a short Chinese explanation of unresolved decisions when it helps the author act.
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- Translate intent, not wording. Chinese phrases such as "可向通讯作者索取" are usually too vague
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for Nature-style English unless the restriction and access process are specified.
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- Convert Chinese repository/status descriptions into precise publication terms:
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`数据可用性声明` -> `Data Availability`; `原始数据` -> `raw data`;
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`处理后数据` -> `processed data`; `源数据` -> `source data`;
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`补充材料` -> `Supplementary Information`; `受限数据` -> `restricted data`;
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`合理请求` -> `reasonable request`, only with reason and review route.
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- Use `references/chinese-author-alignment.md` for Chinese terminology, common CN-to-EN failure
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modes, and bilingual intake questions.
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## Default stance
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- Treat the Data Availability statement as a link between the paper's claims and the evidence
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needed to inspect, reproduce, or reuse them.
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- Do not invent DOIs, accession numbers, repository names, licences, embargo dates, ethics
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approvals, access committees, or data-use conditions.
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- Prefer public, discipline-specific repositories. Use generalist or institutional repositories
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only when no suitable community repository exists.
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- Describe both newly generated data and reused third-party data.
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- If data cannot be openly shared, state why, who controls access, how requests are evaluated,
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and what metadata or representative data can still be public.
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- Separate data, code, materials, and protocols unless the journal asks for a combined
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availability section.
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- Keep this skill focused on availability and metadata. Do not rewrite methods, analyze
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statistics, or polish the manuscript unless the user asks for those tasks separately.
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- Flag "available upon request" as weak unless there is a specific legal, ethical, commercial, or
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third-party restriction.
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## Workflow
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1. Identify the target journal and article type. If journal-specific instructions conflict with
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this skill, follow the journal.
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2. Inventory every dataset needed to support the main and supplementary results:
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generated raw data, processed data, figure source data, secondary data, software outputs,
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models, tables, images, and files underlying statistical analysis.
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3. Classify each dataset into one access route:
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`public repository`, `controlled access repository`, `within paper or supplement`,
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`reused public source`, `third-party restricted`, `available on justified request`,
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or `not applicable`.
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4. Choose repository and identifier strategy before drafting text. Prefer DOI, accession number,
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Handle, ARK, or stable repository record over personal websites and temporary cloud links.
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5. Draft the Data Availability statement using explicit dataset-to-location mapping.
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6. Add formal dataset citations for public data that support conclusions.
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7. Run the FAIR and metadata audit before finalizing.
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8. Return ready-to-paste statement text plus any unresolved fields the author must confirm.
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## Output format
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Unless the user asks for another format, return:
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```text
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Data Availability
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[ready-to-paste statement]
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Repository and citation actions
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- [specific actions or "None"]
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Missing information / risk flags
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- [specific flags or "None"]
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中文核对
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- [用中文列出作者需要确认的字段或 "无"]
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```
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When auditing an existing statement, lead with blocking issues first, then provide a revised
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version.
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## Related files
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| File | Open when |
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|---|---|
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| [references/policy-principles.md](references/policy-principles.md) | You need the governing Nature/Springer Nature data-sharing rules or edge-case policy logic |
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| [references/chinese-author-alignment.md](references/chinese-author-alignment.md) | The user writes in Chinese, needs bilingual wording, or provides Chinese availability notes |
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| [references/statement-patterns.md](references/statement-patterns.md) | You need ready-to-adapt Data Availability statement patterns |
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| [references/repository-and-identifiers.md](references/repository-and-identifiers.md) | You need repository choice, accession, DOI, embargo, versioning, or dataset citation guidance |
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| [references/fair-metadata-checklist.md](references/fair-metadata-checklist.md) | You need FAIR checks, README metadata, file organization, licences, provenance, or DataCite fields |
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| [references/source-basis.md](references/source-basis.md) | You need to justify rules with official sources or check which source supports which rule |
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## Source hierarchy
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Use sources in this order:
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1. Target journal instructions and submission system requirements.
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2. Nature Portfolio / Springer Nature data, code, materials, and reporting policies.
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3. Repository-specific requirements and domain community standards.
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4. FAIR principles and DataCite metadata practice.
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If a policy detail may have changed, verify the current journal page before giving final
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submission advice.
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MIT License
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Copyright (c) 2026 Yuan Yizhe
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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interface:
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display_name: "Nature Data"
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short_description: "Draft bilingual-aware Nature data statements"
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default_prompt: "Use $nature-data to turn my Chinese or English data notes into a Nature-style Data Availability statement, repository plan, and FAIR metadata checklist."
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# Chinese Author Alignment
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Use this file when the user writes in Chinese, provides a Chinese Data Availability draft, or asks
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for bilingual wording. The goal is not to translate Chinese literally. The goal is to convert the
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author's Chinese description into a Nature-ready English availability route.
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## Core terminology
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| 中文 | Preferred English | Notes |
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|---|---|---|
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| 数据可用性声明 / 数据获取声明 | Data Availability | Use the journal heading `Data Availability`. |
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| 本研究产生的数据 | data generated in this study | Include repository and identifier when public. |
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| 原始数据 | raw data | Do not call processed tables raw data. |
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| 处理后数据 | processed data | State whether processing scripts are available. |
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| 源数据 | source data | Usually data underlying figures or tables. |
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| 补充材料 / 附录 | Supplementary Information | Use exact file/table names when possible. |
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| 公共数据库 | public database / public repository | Name the database and identifier. |
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| 数据存储库 | data repository | Prefer repository over platform unless it is a true archive. |
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| 登录号 / 编号 | accession number | Use for repositories that assign accession IDs. |
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| DOI / 永久链接 | DOI / persistent URL | Prefer DOI when available. |
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| 受限数据 | restricted data | Explain legal, ethical, consent, commercial, or third-party reason. |
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| 脱敏数据 | de-identified data | Do not say anonymous unless re-identification risk is addressed. |
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| 合理请求 | reasonable request | Not enough alone; add route, eligibility, and conditions. |
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| 通讯作者 | corresponding author | Avoid making an email the only durable access route if an institutional route exists. |
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| 数据使用协议 | data-use agreement | State when required for access. |
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| 伦理审批 | ethics approval | Name approval body or requirement when relevant. |
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| 代码可用性 | Code Availability | Keep separate if the journal separates data and code. |
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## Chinese-to-English conversion rules
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- Convert "本文所有数据均包含在正文和补充材料中" to a specific claim:
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name Source Data files, Supplementary Tables, or repository records. If raw data are absent, say
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so as a risk flag rather than pretending they are included.
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- Convert "可向通讯作者合理索取" only after adding:
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why public sharing is impossible, who reviews requests, eligible requesters, required approvals
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or data-use agreement, and expected access route.
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- Convert "数据因隐私原因不可公开" into a controlled-access pattern:
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state privacy/consent/legal basis, public metadata if available, access committee or institution,
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and conditions.
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- Convert "商业数据/企业数据不可公开" into a third-party or commercial restriction pattern:
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name the provider or owner, request route, and whether derived or aggregate data can be shared.
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- Convert "数据将在接收后上传" into an action item:
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deposit before submission or create a private reviewer link if the repository supports it.
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- Convert "使用公开数据集" into a citation requirement:
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include source, version/release/date accessed when relevant, and dataset citation.
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## Bilingual intake questions
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Ask only what is needed for the statement.
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```text
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请确认这些字段:
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1. 哪些数据支撑主文图、补充图和统计分析?
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2. 每类数据是否已有仓库、DOI、登录号或审稿人私密链接?
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3. 是否包含人类参与者、隐私、商业、第三方授权或国家/机构限制?
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4. 如果数据不能公开,谁负责审核申请?需要伦理审批或数据使用协议吗?
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5. 是否有代码、脚本或 README 能解释 raw data 到 figure source data 的处理过程?
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```
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## Common Chinese draft fixes
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| 中文原意 | Avoid literal English | Nature-ready direction |
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|---|---|---|
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| 数据可向通讯作者索取。 | Data are available from the corresponding author upon request. | State the restriction reason and institutional access process. |
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| 所有数据见补充材料。 | All data are in the supplementary materials. | Name exact Supplementary Tables/Source Data and flag missing raw data if any. |
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| 数据暂未上传。 | Data will be uploaded later. | Deposit now or list repository action as blocking. |
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| 使用了公开数据库。 | Public databases were used. | Name database, accession/version/date accessed, and cite dataset. |
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| 因隐私不能公开。 | Data cannot be public for privacy reasons. | Add de-identification status, access committee, eligibility, and agreement terms. |
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## Recommended bilingual output
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When useful, provide English first and Chinese second:
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```text
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Data Availability
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[English statement for submission]
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中文核对
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- 这句话对应中文含义:[brief Chinese explanation]
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- 需要作者确认:[missing accession / repository / ethics condition]
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```
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Do not put Chinese explanatory notes inside the final English statement unless the target journal
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allows bilingual manuscript text.
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