@researai/deepscientist 1.5.16 → 1.6.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (896) hide show
  1. package/AGENTS.md +309 -130
  2. package/AISB/catalog/aisb.b1.agentic_coding.yaml +244 -0
  3. package/AISB/catalog/aisb.b10.climate_earth.yaml +235 -0
  4. package/AISB/catalog/aisb.b11.model_efficiency.yaml +231 -0
  5. package/AISB/catalog/aisb.b12.embodied_ai.yaml +238 -0
  6. package/AISB/catalog/aisb.b2.agent_systems.yaml +229 -0
  7. package/AISB/catalog/aisb.b3.self_evolving_rl.yaml +237 -0
  8. package/AISB/catalog/aisb.b4.lm_reasoning.yaml +240 -0
  9. package/AISB/catalog/aisb.b5.math_proof.yaml +235 -0
  10. package/AISB/catalog/aisb.b6.research_process.yaml +243 -0
  11. package/AISB/catalog/aisb.b7.multimodal_fusion.yaml +232 -0
  12. package/AISB/catalog/aisb.b8.lifesci_drug.yaml +275 -0
  13. package/AISB/catalog/aisb.b9.material_science.yaml +237 -0
  14. package/AISB/catalog/aisb.t3.001_savvy.yaml +159 -0
  15. package/AISB/catalog/aisb.t3.001_savvy.zh.yaml +121 -0
  16. package/AISB/catalog/aisb.t3.002_pinet.yaml +189 -0
  17. package/AISB/catalog/aisb.t3.002_pinet.zh.yaml +130 -0
  18. package/AISB/catalog/aisb.t3.004_decentralattn.yaml +184 -0
  19. package/AISB/catalog/aisb.t3.004_decentralattn.zh.yaml +153 -0
  20. package/AISB/catalog/aisb.t3.005_tsae.yaml +193 -0
  21. package/AISB/catalog/aisb.t3.005_tsae.zh.yaml +139 -0
  22. package/AISB/catalog/aisb.t3.006_physense.yaml +194 -0
  23. package/AISB/catalog/aisb.t3.006_physense.zh.yaml +118 -0
  24. package/AISB/catalog/aisb.t3.007_reasoningiqa.yaml +169 -0
  25. package/AISB/catalog/aisb.t3.007_reasoningiqa.zh.yaml +133 -0
  26. package/AISB/catalog/aisb.t3.008_meanflows.yaml +188 -0
  27. package/AISB/catalog/aisb.t3.008_meanflows.zh.yaml +140 -0
  28. package/AISB/catalog/aisb.t3.009_scoremissing.yaml +179 -0
  29. package/AISB/catalog/aisb.t3.009_scoremissing.zh.yaml +119 -0
  30. package/AISB/catalog/aisb.t3.010_suitabilityfilter.yaml +221 -0
  31. package/AISB/catalog/aisb.t3.010_suitabilityfilter.zh.yaml +141 -0
  32. package/AISB/catalog/aisb.t3.011_osd.yaml +206 -0
  33. package/AISB/catalog/aisb.t3.011_osd.zh.yaml +163 -0
  34. package/AISB/catalog/aisb.t3.012_efficientqat.yaml +206 -0
  35. package/AISB/catalog/aisb.t3.012_efficientqat.zh.yaml +159 -0
  36. package/AISB/catalog/aisb.t3.013_appl.yaml +152 -0
  37. package/AISB/catalog/aisb.t3.013_appl.zh.yaml +126 -0
  38. package/AISB/catalog/aisb.t3.014_piguard.yaml +207 -0
  39. package/AISB/catalog/aisb.t3.014_piguard.zh.yaml +164 -0
  40. package/AISB/catalog/aisb.t3.015_frspec.yaml +209 -0
  41. package/AISB/catalog/aisb.t3.015_frspec.zh.yaml +163 -0
  42. package/AISB/catalog/aisb.t3.016_mathfusion.yaml +166 -0
  43. package/AISB/catalog/aisb.t3.016_mathfusion.zh.yaml +145 -0
  44. package/AISB/catalog/aisb.t3.017_multimodalglp.yaml +171 -0
  45. package/AISB/catalog/aisb.t3.017_multimodalglp.zh.yaml +122 -0
  46. package/AISB/catalog/aisb.t3.018_cotsynth.yaml +206 -0
  47. package/AISB/catalog/aisb.t3.018_cotsynth.zh.yaml +162 -0
  48. package/AISB/catalog/aisb.t3.019_dyscaleut.yaml +211 -0
  49. package/AISB/catalog/aisb.t3.019_dyscaleut.zh.yaml +148 -0
  50. package/AISB/catalog/aisb.t3.020_aristotle.yaml +173 -0
  51. package/AISB/catalog/aisb.t3.020_aristotle.zh.yaml +119 -0
  52. package/AISB/catalog/aisb.t3.021_tokenrecycling.yaml +160 -0
  53. package/AISB/catalog/aisb.t3.021_tokenrecycling.zh.yaml +129 -0
  54. package/AISB/catalog/aisb.t3.022_chainofreasoning.yaml +204 -0
  55. package/AISB/catalog/aisb.t3.022_chainofreasoning.zh.yaml +161 -0
  56. package/AISB/catalog/aisb.t3.023_guidedembed.yaml +211 -0
  57. package/AISB/catalog/aisb.t3.023_guidedembed.zh.yaml +189 -0
  58. package/AISB/catalog/aisb.t3.024_outputcentric.yaml +148 -0
  59. package/AISB/catalog/aisb.t3.024_outputcentric.zh.yaml +131 -0
  60. package/AISB/catalog/aisb.t3.025_deeper.yaml +143 -0
  61. package/AISB/catalog/aisb.t3.025_deeper.zh.yaml +116 -0
  62. package/AISB/catalog/aisb.t3.026_gartkg.yaml +195 -0
  63. package/AISB/catalog/aisb.t3.026_gartkg.zh.yaml +127 -0
  64. package/AISB/catalog/aisb.t3.027_citeeval.yaml +182 -0
  65. package/AISB/catalog/aisb.t3.027_citeeval.zh.yaml +135 -0
  66. package/AISB/catalog/aisb.t3.028_sbam.yaml +206 -0
  67. package/AISB/catalog/aisb.t3.028_sbam.zh.yaml +166 -0
  68. package/AISB/catalog/aisb.t3.029_cdqgeoembed.yaml +224 -0
  69. package/AISB/catalog/aisb.t3.029_cdqgeoembed.zh.yaml +142 -0
  70. package/AISB/catalog/aisb.t3.030_processrm.yaml +211 -0
  71. package/AISB/catalog/aisb.t3.030_processrm.zh.yaml +166 -0
  72. package/AISB/catalog/aisb.t3.031_circuitstability.yaml +172 -0
  73. package/AISB/catalog/aisb.t3.031_circuitstability.zh.yaml +134 -0
  74. package/AISB/catalog/aisb.t3.032_ptsolver.yaml +169 -0
  75. package/AISB/catalog/aisb.t3.032_ptsolver.zh.yaml +135 -0
  76. package/AISB/catalog/aisb.t3.033_gcse.yaml +144 -0
  77. package/AISB/catalog/aisb.t3.033_gcse.zh.yaml +126 -0
  78. package/AISB/catalog/aisb.t3.034_ensemblewm.yaml +183 -0
  79. package/AISB/catalog/aisb.t3.034_ensemblewm.zh.yaml +146 -0
  80. package/AISB/catalog/aisb.t3.035_moralvalueswa.yaml +207 -0
  81. package/AISB/catalog/aisb.t3.035_moralvalueswa.zh.yaml +165 -0
  82. package/AISB/catalog/aisb.t3.036_weakstrongpref.yaml +210 -0
  83. package/AISB/catalog/aisb.t3.036_weakstrongpref.zh.yaml +194 -0
  84. package/AISB/catalog/aisb.t3.037_dementiamask.yaml +172 -0
  85. package/AISB/catalog/aisb.t3.037_dementiamask.zh.yaml +132 -0
  86. package/AISB/catalog/aisb.t3.038_tinysam.yaml +284 -0
  87. package/AISB/catalog/aisb.t3.038_tinysam.zh.yaml +240 -0
  88. package/AISB/catalog/aisb.t3.039_calf.yaml +224 -0
  89. package/AISB/catalog/aisb.t3.039_calf.zh.yaml +194 -0
  90. package/AISB/catalog/aisb.t3.040_graniteguardian.yaml +199 -0
  91. package/AISB/catalog/aisb.t3.040_graniteguardian.zh.yaml +174 -0
  92. package/AISB/catalog/aisb.t3.041_amdm.yaml +149 -0
  93. package/AISB/catalog/aisb.t3.041_amdm.zh.yaml +137 -0
  94. package/AISB/catalog/aisb.t3.042_xpatch.yaml +216 -0
  95. package/AISB/catalog/aisb.t3.042_xpatch.zh.yaml +182 -0
  96. package/AISB/catalog/aisb.t3.043_vhm.yaml +268 -0
  97. package/AISB/catalog/aisb.t3.043_vhm.zh.yaml +193 -0
  98. package/AISB/catalog/aisb.t3.044_rgvi.yaml +224 -0
  99. package/AISB/catalog/aisb.t3.044_rgvi.zh.yaml +176 -0
  100. package/AISB/catalog/aisb.t3.045_pslstm.yaml +203 -0
  101. package/AISB/catalog/aisb.t3.045_pslstm.zh.yaml +179 -0
  102. package/AISB/catalog/aisb.t3.046_nonstatts.yaml +208 -0
  103. package/AISB/catalog/aisb.t3.046_nonstatts.zh.yaml +194 -0
  104. package/AISB/catalog/aisb.t3.047_timepfn.yaml +156 -0
  105. package/AISB/catalog/aisb.t3.047_timepfn.zh.yaml +124 -0
  106. package/AISB/catalog/aisb.t3.048_proxyspex.yaml +148 -0
  107. package/AISB/catalog/aisb.t3.048_proxyspex.zh.yaml +125 -0
  108. package/AISB/catalog/aisb.t3.049_hogwildinference.yaml +183 -0
  109. package/AISB/catalog/aisb.t3.049_hogwildinference.zh.yaml +138 -0
  110. package/AISB/catalog/aisb.t3.050_causalpfn.yaml +214 -0
  111. package/AISB/catalog/aisb.t3.050_causalpfn.zh.yaml +190 -0
  112. package/AISB/catalog/aisb.t3.051_flashtp.yaml +169 -0
  113. package/AISB/catalog/aisb.t3.051_flashtp.zh.yaml +124 -0
  114. package/AISB/catalog/aisb.t3.052_nsdiff.yaml +155 -0
  115. package/AISB/catalog/aisb.t3.052_nsdiff.zh.yaml +138 -0
  116. package/AISB/catalog/aisb.t3.053_k2vae.yaml +158 -0
  117. package/AISB/catalog/aisb.t3.053_k2vae.zh.yaml +132 -0
  118. package/AISB/catalog/aisb.t3.054_timebase.yaml +178 -0
  119. package/AISB/catalog/aisb.t3.054_timebase.zh.yaml +158 -0
  120. package/AISB/catalog/aisb.t3.055_csbrain.yaml +238 -0
  121. package/AISB/catalog/aisb.t3.055_csbrain.zh.yaml +184 -0
  122. package/AISB/catalog/aisb.t3.056_infosam.yaml +224 -0
  123. package/AISB/catalog/aisb.t3.056_infosam.zh.yaml +189 -0
  124. package/AISB/catalog/aisb.t3.057_mdreid.yaml +129 -0
  125. package/AISB/catalog/aisb.t3.057_mdreid.zh.yaml +117 -0
  126. package/AISB/catalog/aisb.t3.058_mindglitch.yaml +171 -0
  127. package/AISB/catalog/aisb.t3.058_mindglitch.zh.yaml +145 -0
  128. package/AISB/catalog/aisb.t3.059_selfsupervised.yaml +154 -0
  129. package/AISB/catalog/aisb.t3.059_selfsupervised.zh.yaml +125 -0
  130. package/AISB/catalog/aisb.t3.060_iaggad.yaml +121 -0
  131. package/AISB/catalog/aisb.t3.060_iaggad.zh.yaml +100 -0
  132. package/AISB/catalog/aisb.t3.061_hsgkn.yaml +136 -0
  133. package/AISB/catalog/aisb.t3.061_hsgkn.zh.yaml +113 -0
  134. package/AISB/catalog/aisb.t3.062_visionts.yaml +237 -0
  135. package/AISB/catalog/aisb.t3.062_visionts.zh.yaml +216 -0
  136. package/AISB/catalog/aisb.t3.063_tsrag.yaml +162 -0
  137. package/AISB/catalog/aisb.t3.063_tsrag.zh.yaml +138 -0
  138. package/AISB/catalog/aisb.t3.064_pir.yaml +221 -0
  139. package/AISB/catalog/aisb.t3.064_pir.zh.yaml +197 -0
  140. package/AISB/catalog/aisb.t3.065_proteinbinding.yaml +234 -0
  141. package/AISB/catalog/aisb.t3.065_proteinbinding.zh.yaml +167 -0
  142. package/AISB/catalog/aisb.t3.066_tropicalattention.yaml +267 -0
  143. package/AISB/catalog/aisb.t3.066_tropicalattention.zh.yaml +229 -0
  144. package/AISB/catalog/aisb.t3.067_kanad.yaml +193 -0
  145. package/AISB/catalog/aisb.t3.067_kanad.zh.yaml +167 -0
  146. package/AISB/catalog/aisb.t3.068_sempo.yaml +187 -0
  147. package/AISB/catalog/aisb.t3.068_sempo.zh.yaml +148 -0
  148. package/AISB/catalog/aisb.t3.069_treehfd.yaml +129 -0
  149. package/AISB/catalog/aisb.t3.069_treehfd.zh.yaml +111 -0
  150. package/AISB/catalog/aisb.t3.070_certifiedunlearning.yaml +224 -0
  151. package/AISB/catalog/aisb.t3.070_certifiedunlearning.zh.yaml +171 -0
  152. package/AISB/catalog/aisb.t3.071_neuralmjd.yaml +142 -0
  153. package/AISB/catalog/aisb.t3.071_neuralmjd.zh.yaml +120 -0
  154. package/AISB/catalog/aisb.t3.072_fedgmt.yaml +181 -0
  155. package/AISB/catalog/aisb.t3.072_fedgmt.zh.yaml +158 -0
  156. package/AISB/catalog/aisb.t3.073_rld.yaml +161 -0
  157. package/AISB/catalog/aisb.t3.073_rld.zh.yaml +129 -0
  158. package/AISB/catalog/aisb.t3.074_lsvi.yaml +163 -0
  159. package/AISB/catalog/aisb.t3.074_lsvi.zh.yaml +129 -0
  160. package/AISB/catalog/aisb.t3.075_treeslicedentropy.yaml +201 -0
  161. package/AISB/catalog/aisb.t3.075_treeslicedentropy.zh.yaml +148 -0
  162. package/AISB/catalog/aisb.t3.076_aanet.yaml +169 -0
  163. package/AISB/catalog/aisb.t3.076_aanet.zh.yaml +129 -0
  164. package/AISB/catalog/aisb.t3.077_cmnn.yaml +199 -0
  165. package/AISB/catalog/aisb.t3.077_cmnn.zh.yaml +165 -0
  166. package/AISB/catalog/aisb.t3.078_conformalanomaly.yaml +146 -0
  167. package/AISB/catalog/aisb.t3.078_conformalanomaly.zh.yaml +117 -0
  168. package/AISB/catalog/aisb.t3.079_dpfkmeans.yaml +131 -0
  169. package/AISB/catalog/aisb.t3.079_dpfkmeans.zh.yaml +104 -0
  170. package/AISB/catalog/aisb.t3.080_latentscorereweight.yaml +169 -0
  171. package/AISB/catalog/aisb.t3.080_latentscorereweight.zh.yaml +123 -0
  172. package/AISB/catalog/aisb.t3.081_qmamba.yaml +150 -0
  173. package/AISB/catalog/aisb.t3.081_qmamba.zh.yaml +117 -0
  174. package/AISB/catalog/aisb.t3.082_onlinellmrouting.yaml +160 -0
  175. package/AISB/catalog/aisb.t3.082_onlinellmrouting.zh.yaml +133 -0
  176. package/AISB/catalog/aisb.t3.083_starformer.yaml +178 -0
  177. package/AISB/catalog/aisb.t3.083_starformer.zh.yaml +140 -0
  178. package/AISB/catalog/aisb.t3.084_ift.yaml +139 -0
  179. package/AISB/catalog/aisb.t3.084_ift.zh.yaml +111 -0
  180. package/AISB/catalog/aisb.t3.085_neuralsurv.yaml +183 -0
  181. package/AISB/catalog/aisb.t3.085_neuralsurv.zh.yaml +143 -0
  182. package/AISB/catalog/aisb.t3.086_stella.yaml +197 -0
  183. package/AISB/catalog/aisb.t3.086_stella.zh.yaml +142 -0
  184. package/AISB/catalog/aisb.t3.087_moses.yaml +167 -0
  185. package/AISB/catalog/aisb.t3.087_moses.zh.yaml +132 -0
  186. package/AISB/catalog/aisb.t3.088_channelnorm.yaml +140 -0
  187. package/AISB/catalog/aisb.t3.088_channelnorm.zh.yaml +109 -0
  188. package/AISB/catalog/aisb.t3.089_causalvelocity.yaml +730 -0
  189. package/AISB/catalog/aisb.t3.089_causalvelocity.zh.yaml +668 -0
  190. package/AISB/catalog/aisb.t3.090_rstib.yaml +144 -0
  191. package/AISB/catalog/aisb.t3.090_rstib.zh.yaml +109 -0
  192. package/AISB/catalog/aisb.t3.091_timeawarecausal.yaml +132 -0
  193. package/AISB/catalog/aisb.t3.091_timeawarecausal.zh.yaml +107 -0
  194. package/AISB/catalog/aisb.t3.092_kmeanslocalopt.yaml +138 -0
  195. package/AISB/catalog/aisb.t3.092_kmeanslocalopt.zh.yaml +110 -0
  196. package/AISB/catalog/aisb.t3.093_fedwmsam.yaml +134 -0
  197. package/AISB/catalog/aisb.t3.093_fedwmsam.zh.yaml +106 -0
  198. package/AISB/catalog/aisb.t3.094_boundre.yaml +147 -0
  199. package/AISB/catalog/aisb.t3.094_boundre.zh.yaml +114 -0
  200. package/AISB/catalog/aisb.t3.095_fastfeaturecp.yaml +153 -0
  201. package/AISB/catalog/aisb.t3.095_fastfeaturecp.zh.yaml +118 -0
  202. package/AISB/catalog/aisb.t3.096_m3svm.yaml +189 -0
  203. package/AISB/catalog/aisb.t3.096_m3svm.zh.yaml +149 -0
  204. package/AISB/catalog/aisb.t3.097_wassersteintl.yaml +212 -0
  205. package/AISB/catalog/aisb.t3.097_wassersteintl.zh.yaml +169 -0
  206. package/AISB/catalog/aisb.t3.098_xmahalanobis.yaml +171 -0
  207. package/AISB/catalog/aisb.t3.098_xmahalanobis.zh.yaml +127 -0
  208. package/AISB/catalog/aisb.t3.099_ollalanding.yaml +248 -0
  209. package/AISB/catalog/aisb.t3.099_ollalanding.zh.yaml +182 -0
  210. package/AISB/catalog/aisb.t3.100_invmissingdata.yaml +179 -0
  211. package/AISB/catalog/aisb.t3.100_invmissingdata.zh.yaml +150 -0
  212. package/AISB/catalog/aisb.t3.101_acia.yaml +164 -0
  213. package/AISB/catalog/aisb.t3.101_acia.zh.yaml +109 -0
  214. package/AISB/catalog/aisb.t3.102_stochasticff.yaml +178 -0
  215. package/AISB/catalog/aisb.t3.102_stochasticff.zh.yaml +130 -0
  216. package/AISB/catalog/aisb.t3.103_qdcp.yaml +150 -0
  217. package/AISB/catalog/aisb.t3.103_qdcp.zh.yaml +116 -0
  218. package/AISB/catalog/aisb.t3.104_balancedactiveinf.yaml +137 -0
  219. package/AISB/catalog/aisb.t3.104_balancedactiveinf.zh.yaml +104 -0
  220. package/AISB/catalog/aisb.t3.105_binaryclasseval.yaml +161 -0
  221. package/AISB/catalog/aisb.t3.105_binaryclasseval.zh.yaml +130 -0
  222. package/AISB/image/001_aisb.t3.001_savvy.jpg +0 -0
  223. package/AISB/image/002_aisb.t3.002_pinet.jpg +0 -0
  224. package/AISB/image/003_aisb.t3.003_dmsqd.jpg +0 -0
  225. package/AISB/image/004_aisb.t3.004_decentralattn.jpg +0 -0
  226. package/AISB/image/005_aisb.t3.005_tsae.jpg +0 -0
  227. package/AISB/image/006_aisb.t3.006_physense.jpg +0 -0
  228. package/AISB/image/007_aisb.t3.007_reasoningiqa.jpg +0 -0
  229. package/AISB/image/008_aisb.t3.008_meanflows.jpg +0 -0
  230. package/AISB/image/009_aisb.t3.009_scoremissing.jpg +0 -0
  231. package/AISB/image/010_aisb.t3.010_suitabilityfilter.jpg +0 -0
  232. package/AISB/image/011_aisb.t3.011_osd.jpg +0 -0
  233. package/AISB/image/012_aisb.t3.012_efficientqat.jpg +0 -0
  234. package/AISB/image/013_aisb.t3.013_appl.jpg +0 -0
  235. package/AISB/image/014_aisb.t3.014_piguard.jpg +0 -0
  236. package/AISB/image/015_aisb.t3.015_frspec.jpg +0 -0
  237. package/AISB/image/016_aisb.t3.016_mathfusion.jpg +0 -0
  238. package/AISB/image/017_aisb.t3.017_multimodalglp.jpg +0 -0
  239. package/AISB/image/018_aisb.t3.018_cotsynth.jpg +0 -0
  240. package/AISB/image/019_aisb.t3.019_dyscaleut.jpg +0 -0
  241. package/AISB/image/020_aisb.t3.020_aristotle.jpg +0 -0
  242. package/AISB/image/021_aisb.t3.021_tokenrecycling.jpg +0 -0
  243. package/AISB/image/022_aisb.t3.022_chainofreasoning.jpg +0 -0
  244. package/AISB/image/023_aisb.t3.023_guidedembed.jpg +0 -0
  245. package/AISB/image/024_aisb.t3.024_outputcentric.jpg +0 -0
  246. package/AISB/image/025_aisb.t3.025_deeper.jpg +0 -0
  247. package/AISB/image/026_aisb.t3.026_gartkg.jpg +0 -0
  248. package/AISB/image/027_aisb.t3.027_citeeval.jpg +0 -0
  249. package/AISB/image/028_aisb.t3.028_sbam.jpg +0 -0
  250. package/AISB/image/029_aisb.t3.029_cdqgeoembed.jpg +0 -0
  251. package/AISB/image/030_aisb.t3.030_processrm.jpg +0 -0
  252. package/AISB/image/031_aisb.t3.031_circuitstability.jpg +0 -0
  253. package/AISB/image/032_aisb.t3.032_ptsolver.jpg +0 -0
  254. package/AISB/image/033_aisb.t3.033_gcse.jpg +0 -0
  255. package/AISB/image/034_aisb.t3.034_ensemblewm.jpg +0 -0
  256. package/AISB/image/035_aisb.t3.035_moralvalueswa.jpg +0 -0
  257. package/AISB/image/036_aisb.t3.036_weakstrongpref.jpg +0 -0
  258. package/AISB/image/037_aisb.t3.037_dementiamask.jpg +0 -0
  259. package/AISB/image/038_aisb.t3.038_tinysam.jpg +0 -0
  260. package/AISB/image/039_aisb.t3.039_calf.jpg +0 -0
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  839. package/src/ui/dist/assets/{TextViewerPlugin-CB4DYfWO.js → TextViewerPlugin-D1-T3aC7.js} +4 -4
  840. package/src/ui/dist/assets/branding/runner-claude.svg +107 -0
  841. package/src/ui/dist/assets/branding/runner-codex.svg +10 -0
  842. package/src/ui/dist/assets/branding/runner-kimi.svg +14 -0
  843. package/src/ui/dist/assets/branding/runner-opencode.svg +7 -0
  844. package/src/ui/dist/assets/cli-store-CoZ-x5Ip.js +1 -0
  845. package/src/ui/dist/assets/{code-DLC6G24T.js → code-DbsmSd3Y.js} +1 -1
  846. package/src/ui/dist/assets/file-diff-panel-DsvyRz47.js +1 -0
  847. package/src/ui/dist/assets/{wrap-text-CwMn-iqb.js → file-jump-queue-DeQBikaw.js} +3 -3
  848. package/src/ui/dist/assets/{file-socket-Cu4Qln7Y.js → file-socket-DA5XIx88.js} +1 -1
  849. package/src/ui/dist/assets/fonts/ds-fonts.css +50 -4
  850. package/src/ui/dist/assets/images/deepxiv/register-guide.png +0 -0
  851. package/src/ui/dist/assets/index-39vY9LmZ.js +1 -0
  852. package/src/ui/dist/assets/{index-wQ7RIIRd.js → index-BsO46tJA.js} +1 -1
  853. package/src/ui/dist/assets/index-CHzJ2xtB.js +3530 -0
  854. package/src/ui/dist/assets/index-DH-zxoZ3.css +33 -0
  855. package/src/ui/dist/assets/{plugin-notebook-HbW2K-1c.js → plugin-notebook-JRhysCqj.js} +2 -2
  856. package/src/ui/dist/assets/{project-sync-CsX08Qno.js → project-sync-DPmWKmKD.js} +1 -1
  857. package/src/ui/dist/assets/{zoom-out-R-GWEhzS.js → zoom-out-DAukFWen.js} +3 -3
  858. package/src/ui/dist/index.html +3 -3
  859. package/src/skills/analysis-campaign/references/artifact-orchestration.md +0 -58
  860. package/src/skills/baseline/references/memory-playbook.md +0 -40
  861. package/src/skills/baseline/references/publishable-baseline-package.md +0 -30
  862. package/src/skills/write/references/outline-evidence-contract-example.md +0 -107
  863. package/src/skills/write/references/paper-experiment-matrix-template.md +0 -131
  864. package/src/skills/write/references/paper-section-playbook.md +0 -64
  865. package/src/skills/write/references/reviewer-first-writing.md +0 -64
  866. package/src/skills/write/references/revision-checklist.md +0 -70
  867. package/src/skills/write/references/section-contracts.md +0 -82
  868. package/src/skills/write/references/sentence-level-proofing.md +0 -49
  869. package/src/ui/dist/assets/AiManusChatView-COFACy7V.js +0 -204
  870. package/src/ui/dist/assets/CliPlugin-CvwCmDQ5.js +0 -109
  871. package/src/ui/dist/assets/CodeEditorPlugin-cOqSa0xq.js +0 -2
  872. package/src/ui/dist/assets/GitCommitViewerPlugin-DVgNHBCS.js +0 -1
  873. package/src/ui/dist/assets/LabCopilotPanel-ClMbq5Yu.js +0 -14
  874. package/src/ui/dist/assets/LabPlugin-L_SuE8ow.js +0 -22
  875. package/src/ui/dist/assets/NotebookEditor-C-4Kt1p9.js +0 -81
  876. package/src/ui/dist/assets/PdfViewerPlugin-DcOzU9vd.js +0 -17
  877. package/src/ui/dist/assets/SearchPlugin-CHj7M58O.js +0 -16
  878. package/src/ui/dist/assets/VNCViewer-CjlbyCB3.js +0 -11
  879. package/src/ui/dist/assets/bot-CFkZY-JP.js +0 -6
  880. package/src/ui/dist/assets/chevron-up-Dq5ofbht.js +0 -6
  881. package/src/ui/dist/assets/file-content-Dv4LoZec.js +0 -1
  882. package/src/ui/dist/assets/file-diff-panel-Denq-lC3.js +0 -1
  883. package/src/ui/dist/assets/file-jump-queue-DA-SdG__.js +0 -1
  884. package/src/ui/dist/assets/git-commit-horizontal-BUh6G52n.js +0 -6
  885. package/src/ui/dist/assets/image-B9HUUddG.js +0 -6
  886. package/src/ui/dist/assets/index-B2B1sg-M.js +0 -1
  887. package/src/ui/dist/assets/index-Cgla8biy.css +0 -33
  888. package/src/ui/dist/assets/index-DRyx7vAc.js +0 -1
  889. package/src/ui/dist/assets/index-Gbl53BNp.js +0 -2496
  890. package/src/ui/dist/assets/pdf-effect-queue-ZtnHFCAi.js +0 -6
  891. package/src/ui/dist/assets/popover-DL6h35vr.js +0 -1
  892. package/src/ui/dist/assets/select-DvmXt1yY.js +0 -11
  893. package/src/ui/dist/assets/sigma-7jpXazui.js +0 -6
  894. package/src/ui/dist/assets/trash-xA7kFt8i.js +0 -11
  895. package/src/ui/dist/assets/useCliAccess-DsMwDjOp.js +0 -1
  896. package/src/ui/dist/assets/useFileDiffOverlay-FuhcnKiw.js +0 -1
@@ -1,21 +1,28 @@
1
1
  from __future__ import annotations
2
2
 
3
+ from datetime import UTC, datetime, timedelta
3
4
  import os
5
+ import shlex
4
6
  import socket
5
7
  import subprocess
6
8
  import sys
7
9
  import tempfile
8
10
  from shutil import which
9
11
  from pathlib import Path
10
- from typing import Any
12
+ from typing import Any, Callable
11
13
  from urllib.error import URLError
12
14
  from urllib.request import Request, urlopen
13
15
 
14
16
  from .bash_exec.shells import build_exec_shell_launch, build_terminal_shell_launch
15
17
  from .config import ConfigManager
18
+ from .diagnostics import diagnose_runner_failure
16
19
  from .home import ensure_home_layout
20
+ from .runners.metadata import list_builtin_runner_names
17
21
  from .runtime_tools import RuntimeToolService
18
- from .shared import resolve_runner_binary, utc_now
22
+ from .shared import read_json, read_jsonl_tail, resolve_runner_binary, utc_now, utf8_text_subprocess_kwargs
23
+
24
+
25
+ _RUNTIME_FAILURE_LOOKBACK = timedelta(hours=24)
19
26
 
20
27
 
21
28
  def _browser_ui_url(host: str, port: int) -> str:
@@ -42,6 +49,10 @@ def _make_check(
42
49
  errors: list[str] | None = None,
43
50
  guidance: list[str] | None = None,
44
51
  details: dict[str, Any] | None = None,
52
+ problem: str | None = None,
53
+ why: str | None = None,
54
+ fix: list[str] | None = None,
55
+ evidence: list[str] | None = None,
45
56
  ) -> dict[str, Any]:
46
57
  normalized_warnings = list(warnings or [])
47
58
  normalized_errors = list(errors or [])
@@ -55,9 +66,47 @@ def _make_check(
55
66
  "errors": normalized_errors,
56
67
  "guidance": list(guidance or []),
57
68
  "details": dict(details or {}),
69
+ "problem": str(problem or "").strip() or None,
70
+ "why": str(why or "").strip() or None,
71
+ "fix": [str(line) for line in (fix or []) if str(line).strip()],
72
+ "evidence": [str(line) for line in (evidence or []) if str(line).strip()],
58
73
  }
59
74
 
60
75
 
76
+ def _probe_detail_subset(details: dict[str, Any], *, resolved_binary: str) -> dict[str, Any]:
77
+ keys = (
78
+ "profile",
79
+ "model",
80
+ "requested_model",
81
+ "effective_model",
82
+ "approval_policy",
83
+ "sandbox_mode",
84
+ "reasoning_effort",
85
+ "requested_reasoning_effort",
86
+ "codex_cli_version",
87
+ "provider_env_key",
88
+ "provider_env_missing",
89
+ "provider_wire_api",
90
+ "model_fallback_attempted",
91
+ "model_fallback_used",
92
+ "exit_code",
93
+ "stdout_excerpt",
94
+ "stderr_excerpt",
95
+ "probe_command",
96
+ "initial_exit_code",
97
+ "initial_stdout_excerpt",
98
+ "initial_stderr_excerpt",
99
+ "fallback_exit_code",
100
+ "fallback_stdout_excerpt",
101
+ "fallback_stderr_excerpt",
102
+ )
103
+ rendered: dict[str, Any] = {"resolved_binary": resolved_binary}
104
+ for key in keys:
105
+ if key in details:
106
+ rendered[key] = details.get(key)
107
+ return rendered
108
+
109
+
61
110
  def _check_python_runtime() -> dict[str, Any]:
62
111
  try:
63
112
  import _cffi_backend # noqa: F401
@@ -159,7 +208,7 @@ def _check_uv(home: Path) -> dict[str, Any]:
159
208
  [resolved, "--version"],
160
209
  check=False,
161
210
  capture_output=True,
162
- text=True,
211
+ **utf8_text_subprocess_kwargs(),
163
212
  )
164
213
  if result.returncode == 0:
165
214
  version = (result.stdout or result.stderr or "").strip()
@@ -217,84 +266,275 @@ def _check_config_validation(config_manager: ConfigManager) -> dict[str, Any]:
217
266
 
218
267
  def _check_runner_support(config_manager: ConfigManager) -> dict[str, Any]:
219
268
  config_payload = config_manager.load_named_normalized("config")
220
- runners_payload = config_manager.load_named_normalized("runners")
269
+ runners_payload = config_manager.load_runners_config()
221
270
 
222
271
  default_runner = str(config_payload.get("default_runner") or "codex").strip().lower() or "codex"
223
- codex_cfg = runners_payload.get("codex") if isinstance(runners_payload.get("codex"), dict) else {}
224
- claude_cfg = runners_payload.get("claude") if isinstance(runners_payload.get("claude"), dict) else {}
272
+ enabled_runners = sorted(
273
+ name for name, value in runners_payload.items() if isinstance(value, dict) and bool(value.get("enabled", False))
274
+ )
225
275
 
226
276
  errors: list[str] = []
227
277
  warnings: list[str] = []
228
278
  guidance: list[str] = []
229
279
 
230
- if default_runner != "codex":
231
- errors.append("Current open-source release supports `codex` as the runnable default runner.")
232
- guidance.append("Set `default_runner: codex` in `~/DeepScientist/config/config.yaml`.")
233
- if not bool(codex_cfg.get("enabled", False)):
234
- errors.append("`runners.codex.enabled` must stay `true` in the current release.")
235
- guidance.append("Set `runners.codex.enabled: true` in `~/DeepScientist/config/runners.yaml`.")
236
- if bool(claude_cfg.get("enabled", False)):
237
- errors.append("`claude` is still TODO in the current release and should stay disabled.")
238
- guidance.append("Set `runners.claude.enabled: false` in `~/DeepScientist/config/runners.yaml`.")
239
- else:
240
- warnings.append("`claude` remains a TODO/reserved runner slot and is not runnable yet.")
280
+ if not enabled_runners:
281
+ errors.append("At least one runner must be enabled.")
282
+ guidance.append("Enable one of `codex`, `claude`, `kimi`, or `opencode` in `~/DeepScientist/config/runners.yaml`.")
283
+ if default_runner not in runners_payload:
284
+ errors.append(f"Configured default runner `{default_runner}` does not exist in `runners.yaml`.")
285
+ elif default_runner not in enabled_runners:
286
+ errors.append(f"Configured default runner `{default_runner}` is currently disabled.")
287
+ guidance.append(
288
+ f"Set `runners.{default_runner}.enabled: true`, or switch `default_runner` to one of: {', '.join(enabled_runners) or 'none'}."
289
+ )
290
+ if len(enabled_runners) > 1:
291
+ warnings.append(f"Multiple runners are enabled: {', '.join(enabled_runners)}.")
241
292
 
242
293
  return _make_check(
243
294
  check_id="runner_support",
244
295
  label="Supported runners",
245
296
  ok=len(errors) == 0,
246
- summary="Runner policy matches the current release surface." if len(errors) == 0 else "Runner policy needs adjustment.",
297
+ summary="Runner policy is internally consistent." if len(errors) == 0 else "Runner policy needs adjustment.",
247
298
  warnings=warnings,
248
299
  errors=errors,
249
300
  guidance=guidance,
250
- details={"default_runner": default_runner},
301
+ details={"default_runner": default_runner, "enabled_runners": enabled_runners},
251
302
  )
252
303
 
253
304
 
254
- def _check_codex(config_manager: ConfigManager) -> dict[str, Any]:
255
- runners_payload = config_manager.load_named_normalized("runners")
256
- codex_cfg = runners_payload.get("codex") if isinstance(runners_payload.get("codex"), dict) else {}
257
- binary = str(codex_cfg.get("binary") or "codex").strip() or "codex"
258
- resolved_binary = resolve_runner_binary(binary, runner_name="codex")
305
+ def _check_runner(config_manager: ConfigManager, runner_name: str) -> dict[str, Any]:
306
+ normalized_runner = str(runner_name or "codex").strip().lower() or "codex"
307
+ runners_payload = config_manager.load_runners_config()
308
+ runner_cfg = runners_payload.get(normalized_runner) if isinstance(runners_payload.get(normalized_runner), dict) else {}
309
+ binary = str(runner_cfg.get("binary") or normalized_runner).strip() or normalized_runner
310
+ resolved_binary = resolve_runner_binary(binary, runner_name=normalized_runner)
311
+ label = {
312
+ "codex": "Codex CLI",
313
+ "claude": "Claude Code CLI",
314
+ "kimi": "Kimi Code CLI",
315
+ "opencode": "OpenCode CLI",
316
+ }.get(normalized_runner, normalized_runner)
259
317
 
260
318
  if not resolved_binary:
319
+ guidance = config_manager._runner_missing_binary_guidance(normalized_runner, runner_cfg)
261
320
  return _make_check(
262
- check_id="codex",
263
- label="Codex CLI",
321
+ check_id=normalized_runner,
322
+ label=label,
264
323
  ok=False,
265
- summary="Codex CLI is not available to DeepScientist.",
324
+ summary=f"{label} is not available to DeepScientist.",
266
325
  errors=[f"Runner binary `{binary}` could not be resolved."],
267
- guidance=config_manager._codex_missing_binary_guidance(codex_cfg),
326
+ guidance=guidance,
268
327
  details={"binary": binary},
269
328
  )
270
329
 
271
- probe = config_manager.probe_codex_bootstrap(persist=False, payload=runners_payload)
330
+ probe = (
331
+ config_manager.probe_codex_bootstrap(persist=False, payload=runners_payload)
332
+ if normalized_runner == "codex"
333
+ else config_manager.probe_runner_bootstrap(normalized_runner, persist=False, payload=runners_payload)
334
+ )
272
335
  probe_errors = [str(value) for value in probe.get("errors") or []]
273
336
  probe_warnings = [str(value) for value in probe.get("warnings") or []]
274
337
  probe_guidance = [str(value) for value in probe.get("guidance") or []]
275
- summary = str(probe.get("summary") or "Codex startup probe completed.")
338
+ summary = str(probe.get("summary") or f"{label} startup probe completed.")
339
+ probe_details = probe.get("details") if isinstance(probe.get("details"), dict) else {}
340
+ diagnosis = None
341
+ if normalized_runner == "codex":
342
+ diagnosis = diagnose_runner_failure(
343
+ runner_name="codex",
344
+ summary="\n".join([summary, *probe_errors]),
345
+ stderr_text=str(probe_details.get("stderr_excerpt") or ""),
346
+ output_text=str(probe_details.get("stdout_excerpt") or ""),
347
+ )
276
348
  if probe.get("ok"):
277
349
  return _make_check(
278
- check_id="codex",
279
- label="Codex CLI",
350
+ check_id=normalized_runner,
351
+ label=label,
280
352
  ok=True,
281
353
  summary=summary,
282
354
  warnings=probe_warnings,
283
355
  details={"resolved_binary": resolved_binary},
284
356
  )
285
- if not probe_guidance:
286
- probe_guidance = [
287
- "Run `codex --login` (or `codex`) manually once and complete login, then retry `ds doctor`.",
288
- ]
289
357
  return _make_check(
290
- check_id="codex",
291
- label="Codex CLI",
358
+ check_id=normalized_runner,
359
+ label=label,
292
360
  ok=False,
293
- summary=summary,
361
+ summary=diagnosis.problem if diagnosis is not None else summary,
294
362
  warnings=probe_warnings,
295
- errors=probe_errors or ["Codex startup probe did not succeed."],
363
+ errors=probe_errors or [f"{label} startup probe did not succeed."],
296
364
  guidance=probe_guidance,
297
- details={"resolved_binary": resolved_binary},
365
+ details=_probe_detail_subset(probe_details, resolved_binary=resolved_binary),
366
+ problem=diagnosis.problem if diagnosis is not None else None,
367
+ why=diagnosis.why if diagnosis is not None else None,
368
+ fix=list(diagnosis.guidance) if diagnosis is not None else None,
369
+ evidence=([f"matched: {diagnosis.matched_text}"] if diagnosis is not None and diagnosis.matched_text else None),
370
+ )
371
+
372
+
373
+ def _check_codex(config_manager: ConfigManager) -> dict[str, Any]:
374
+ return _check_runner(config_manager, "codex")
375
+
376
+ def _parse_timestamp(value: object) -> datetime | None:
377
+ normalized = str(value or "").strip()
378
+ if not normalized:
379
+ return None
380
+ candidate = normalized.replace("Z", "+00:00")
381
+ try:
382
+ parsed = datetime.fromisoformat(candidate)
383
+ except ValueError:
384
+ return None
385
+ if parsed.tzinfo is None:
386
+ parsed = parsed.replace(tzinfo=UTC)
387
+ return parsed.astimezone(UTC)
388
+
389
+
390
+ def _read_runtime_failure_record(home: Path) -> dict[str, Any] | None:
391
+ quests_root = home / "quests"
392
+ if not quests_root.exists():
393
+ return None
394
+
395
+ latest: dict[str, Any] | None = None
396
+ latest_at: datetime | None = None
397
+ cutoff = datetime.now(UTC) - _RUNTIME_FAILURE_LOOKBACK
398
+ interesting_types = {
399
+ "runner.turn_error",
400
+ "runner.turn_retry_exhausted",
401
+ "quest.runtime_auto_resume_suppressed",
402
+ }
403
+
404
+ for quest_root in sorted(quests_root.glob("*/")):
405
+ events = read_jsonl_tail(quest_root / ".ds" / "events.jsonl", 300)
406
+ for event in reversed(events):
407
+ event_type = str(event.get("type") or "").strip()
408
+ if event_type not in interesting_types:
409
+ continue
410
+ created_at = _parse_timestamp(event.get("created_at"))
411
+ if created_at is None or created_at < cutoff:
412
+ continue
413
+ run_id = str(event.get("run_id") or "").strip() or None
414
+ stderr_text = ""
415
+ output_text = ""
416
+ if run_id:
417
+ run_root = quest_root / ".ds" / "runs" / run_id
418
+ result_payload = read_json(run_root / "result.json", {})
419
+ if isinstance(result_payload, dict):
420
+ stderr_text = str(result_payload.get("stderr_text") or "").strip()
421
+ output_text = str(result_payload.get("output_text") or "").strip()
422
+ stderr_path = run_root / "stderr.txt"
423
+ if not stderr_text and stderr_path.exists():
424
+ try:
425
+ stderr_text = stderr_path.read_text(encoding="utf-8")
426
+ except OSError:
427
+ stderr_text = ""
428
+ candidate = {
429
+ "quest_id": quest_root.name,
430
+ "run_id": run_id,
431
+ "event_type": event_type,
432
+ "summary": str(event.get("summary") or "").strip(),
433
+ "created_at": created_at.isoformat(),
434
+ "stderr_text": stderr_text,
435
+ "output_text": output_text,
436
+ "recent_attempts": event.get("recent_attempts"),
437
+ }
438
+ if latest_at is None or created_at > latest_at:
439
+ latest = candidate
440
+ latest_at = created_at
441
+ break
442
+ return latest
443
+
444
+
445
+ def _check_recent_runtime_failures(home: Path) -> dict[str, Any]:
446
+ record = _read_runtime_failure_record(home)
447
+ if record is None:
448
+ return _make_check(
449
+ check_id="recent_runtime_failures",
450
+ label="Recent runtime failures",
451
+ ok=True,
452
+ summary="No recent quest runtime failures were found.",
453
+ )
454
+
455
+ event_type = str(record.get("event_type") or "").strip()
456
+ quest_id = str(record.get("quest_id") or "").strip() or None
457
+ run_id = str(record.get("run_id") or "").strip() or None
458
+ summary = str(record.get("summary") or "").strip()
459
+ details = {
460
+ "quest_id": quest_id,
461
+ "run_id": run_id,
462
+ "event_type": event_type,
463
+ "observed_at": record.get("created_at"),
464
+ }
465
+
466
+ if event_type == "quest.runtime_auto_resume_suppressed":
467
+ recent_attempts = int(record.get("recent_attempts") or 0)
468
+ return _make_check(
469
+ check_id="recent_runtime_failures",
470
+ label="Recent runtime failures",
471
+ ok=True,
472
+ summary="DeepScientist recently suppressed auto-resume to avoid a crash loop.",
473
+ warnings=["Automatic continuation was paused after repeated recovery attempts in a short window."],
474
+ guidance=[
475
+ "Inspect the most recent failing runner path before using `/resume` again.",
476
+ "If the failure was a provider-side 400/protocol error, fix that request path first instead of retrying immediately.",
477
+ ],
478
+ details=details,
479
+ problem="Automatic crash recovery was suppressed.",
480
+ why="The same quest hit repeated recovery attempts in a short window, so DeepScientist parked it instead of looping forever.",
481
+ fix=[
482
+ "Open the latest failing quest logs and identify the deterministic runner/provider error.",
483
+ "Resume manually only after the underlying runner or provider issue is corrected.",
484
+ ],
485
+ evidence=[
486
+ *( [f"quest: {quest_id}"] if quest_id else [] ),
487
+ f"recent recovery attempts: {recent_attempts}",
488
+ ],
489
+ )
490
+
491
+ diagnosis = diagnose_runner_failure(
492
+ runner_name="codex",
493
+ summary=summary,
494
+ stderr_text=str(record.get("stderr_text") or ""),
495
+ output_text=str(record.get("output_text") or ""),
496
+ )
497
+ if diagnosis is None:
498
+ return _make_check(
499
+ check_id="recent_runtime_failures",
500
+ label="Recent runtime failures",
501
+ ok=True,
502
+ summary="A recent quest runtime failure was found.",
503
+ warnings=[summary or "The latest quest run failed, but doctor could not classify it precisely yet."],
504
+ guidance=[
505
+ "Open the latest run stderr and events journal for the failing quest.",
506
+ "If the same failure repeats, capture the run_id and provider response text before retrying again.",
507
+ ],
508
+ details=details,
509
+ problem="A recent quest run failed.",
510
+ why="Doctor found a recent runtime failure event but could not match it to a known deterministic error pattern.",
511
+ fix=[
512
+ "Inspect the failing run's stderr and provider response text.",
513
+ "If the error is deterministic, avoid burning the retry budget until the request shape or config is fixed.",
514
+ ],
515
+ evidence=[
516
+ *( [f"quest: {quest_id}"] if quest_id else [] ),
517
+ *( [f"run: {run_id}"] if run_id else [] ),
518
+ *( [f"summary: {summary}"] if summary else [] ),
519
+ ],
520
+ )
521
+
522
+ return _make_check(
523
+ check_id="recent_runtime_failures",
524
+ label="Recent runtime failures",
525
+ ok=True,
526
+ summary=diagnosis.problem,
527
+ warnings=[summary] if summary and summary != diagnosis.problem else [],
528
+ guidance=list(diagnosis.guidance),
529
+ details=details,
530
+ problem=diagnosis.problem,
531
+ why=diagnosis.why,
532
+ fix=list(diagnosis.guidance),
533
+ evidence=[
534
+ *( [f"quest: {quest_id}"] if quest_id else [] ),
535
+ *( [f"run: {run_id}"] if run_id else [] ),
536
+ *( [f"matched: {diagnosis.matched_text}"] if diagnosis.matched_text else [] ),
537
+ ],
298
538
  )
299
539
 
300
540
 
@@ -444,9 +684,11 @@ def _check_ui_port(home: Path, config_manager: ConfigManager) -> dict[str, Any]:
444
684
  summary="The configured port is already used by another DeepScientist home.",
445
685
  errors=[f"{browser_url} is already serving a daemon for `{daemon_home}`."],
446
686
  guidance=[
447
- "Stop the other daemon first or change `ui.port` in `~/DeepScientist/config/config.yaml`.",
687
+ f"If you intended to use that running instance, run `ds --home {daemon_home} doctor` and open {browser_url}.",
688
+ f"If it is stale, stop it with `ds --home {daemon_home} --stop`.",
689
+ "Otherwise change `ui.port` in this home config or start this home with a different port, for example `ds --port 21000`.",
448
690
  ],
449
- details={"browser_url": browser_url, "host": host, "port": port},
691
+ details={"browser_url": browser_url, "host": host, "port": port, "daemon_home": daemon_home},
450
692
  )
451
693
 
452
694
  bindable, bind_error = _port_is_bindable(host, port)
@@ -472,7 +714,16 @@ def _check_ui_port(home: Path, config_manager: ConfigManager) -> dict[str, Any]:
472
714
  )
473
715
 
474
716
 
475
- def run_doctor(home: Path, *, repo_root: Path) -> dict[str, Any]:
717
+ DoctorProgressCallback = Callable[[dict[str, Any]], None]
718
+
719
+
720
+ def run_doctor(
721
+ home: Path,
722
+ *,
723
+ repo_root: Path,
724
+ runner_names: list[str] | None = None,
725
+ on_check: DoctorProgressCallback | None = None,
726
+ ) -> dict[str, Any]:
476
727
  ensure_home_layout(home)
477
728
  config_manager = ConfigManager(home)
478
729
  config_manager.ensure_files()
@@ -482,19 +733,51 @@ def run_doctor(home: Path, *, repo_root: Path) -> dict[str, Any]:
482
733
  port = int(ui_payload.get("port") or 20999)
483
734
  browser_url = _browser_ui_url(host, port)
484
735
 
485
- checks = [
486
- _check_python_runtime(),
487
- _check_home_writable(home),
488
- _check_uv(home),
489
- _check_shell_backend(),
490
- _check_git(config_manager),
491
- _check_config_validation(config_manager),
492
- _check_runner_support(config_manager),
493
- _check_codex(config_manager),
494
- _check_latex_runtime(home),
495
- _check_bundles(repo_root),
496
- _check_ui_port(home, config_manager),
736
+ check_factories: list[tuple[str, Callable[[], dict[str, Any]]]] = [
737
+ ("python_runtime", _check_python_runtime),
738
+ ("home_writable", lambda: _check_home_writable(home)),
739
+ ("uv", lambda: _check_uv(home)),
740
+ ("shell_backend", _check_shell_backend),
741
+ ("git", lambda: _check_git(config_manager)),
742
+ ("config_validation", lambda: _check_config_validation(config_manager)),
743
+ ("runner_support", lambda: _check_runner_support(config_manager)),
497
744
  ]
745
+ runners_payload = config_manager.load_runners_config()
746
+ default_runner = str(config_payload.get("default_runner") or "codex").strip().lower() or "codex"
747
+ runner_targets: list[str] = []
748
+ explicit_runner_names = _normalize_doctor_runner_targets(runner_names)
749
+ if explicit_runner_names:
750
+ candidate_runner_names = explicit_runner_names
751
+ else:
752
+ candidate_runner_names = [
753
+ default_runner,
754
+ *sorted(name for name, value in runners_payload.items() if isinstance(value, dict) and bool(value.get("enabled", False))),
755
+ ]
756
+ for candidate in candidate_runner_names:
757
+ normalized_candidate = str(candidate or "").strip().lower()
758
+ if normalized_candidate and normalized_candidate not in runner_targets:
759
+ runner_targets.append(normalized_candidate)
760
+ check_factories.extend((runner_name, (lambda runner_name=runner_name: _check_runner(config_manager, runner_name))) for runner_name in runner_targets)
761
+ check_factories.extend([
762
+ ("recent_runtime_failures", lambda: _check_recent_runtime_failures(home)),
763
+ ("latex_runtime", lambda: _check_latex_runtime(home)),
764
+ ("bundles", lambda: _check_bundles(repo_root)),
765
+ ("ui_port", lambda: _check_ui_port(home, config_manager)),
766
+ ])
767
+ checks: list[dict[str, Any]] = []
768
+ total_checks = len(check_factories)
769
+ for index, (check_id, factory) in enumerate(check_factories, start=1):
770
+ check = factory()
771
+ checks.append(check)
772
+ if on_check is not None:
773
+ on_check(
774
+ {
775
+ "check_id": check_id,
776
+ "index": index,
777
+ "total": total_checks,
778
+ "check": check,
779
+ }
780
+ )
498
781
 
499
782
  return {
500
783
  "ok": all(item["ok"] for item in checks),
@@ -505,6 +788,31 @@ def run_doctor(home: Path, *, repo_root: Path) -> dict[str, Any]:
505
788
  }
506
789
 
507
790
 
791
+ def _normalize_doctor_runner_targets(runner_names: list[str] | None) -> list[str]:
792
+ targets: list[str] = []
793
+ seen: set[str] = set()
794
+ for raw_value in runner_names or []:
795
+ for item in str(raw_value or "").replace(";", ",").split(","):
796
+ normalized = item.strip().lower().replace("_", "-")
797
+ if normalized in {"all", "*"}:
798
+ candidates = list(list_builtin_runner_names())
799
+ else:
800
+ if normalized in {"claude-code", "claudecode"}:
801
+ normalized = "claude"
802
+ elif normalized in {"kimi-code", "kimicode"}:
803
+ normalized = "kimi"
804
+ elif normalized in {"open-code", "open code", "opencode-ai", "opencodeai"}:
805
+ normalized = "opencode"
806
+ else:
807
+ normalized = normalized.replace("-", "")
808
+ candidates = [normalized] if normalized else []
809
+ for candidate in candidates:
810
+ if candidate and candidate not in seen:
811
+ seen.add(candidate)
812
+ targets.append(candidate)
813
+ return targets
814
+
815
+
508
816
  def render_doctor_report(report: dict[str, Any]) -> str:
509
817
  lines = [
510
818
  "DeepScientist doctor",
@@ -519,6 +827,18 @@ def render_doctor_report(report: dict[str, Any]) -> str:
519
827
  status = str(item.get("status") or "ok").upper()
520
828
  icon = {"OK": "[ok]", "WARN": "[warn]", "ERROR": "[fail]"}.get(status, "[info]")
521
829
  lines.append(f"{icon} {item.get('label')}: {item.get('summary')}")
830
+ problem = str(item.get("problem") or "").strip()
831
+ why = str(item.get("why") or "").strip()
832
+ fix_lines = [str(line) for line in item.get("fix") or [] if str(line).strip()]
833
+ evidence_lines = [str(line) for line in item.get("evidence") or [] if str(line).strip()]
834
+ if problem:
835
+ lines.append(f" problem: {problem}")
836
+ if why:
837
+ lines.append(f" why: {why}")
838
+ for line in fix_lines:
839
+ lines.append(f" fix: {line}")
840
+ for line in evidence_lines:
841
+ lines.append(f" evidence: {line}")
522
842
  for warning in item.get("warnings") or []:
523
843
  lines.append(f" warning: {warning}")
524
844
  for error in item.get("errors") or []:
@@ -528,6 +848,34 @@ def render_doctor_report(report: dict[str, Any]) -> str:
528
848
  resolved_binary = str(details.get("resolved_binary") or "").strip()
529
849
  if resolved_binary:
530
850
  lines.append(f" resolved binary: {resolved_binary}")
851
+ exit_code = details.get("exit_code")
852
+ if exit_code is not None:
853
+ lines.append(f" exit code: {exit_code}")
854
+ codex_cli_version = str(details.get("codex_cli_version") or "").strip()
855
+ if codex_cli_version:
856
+ lines.append(f" codex cli version: {codex_cli_version}")
857
+ profile = str(details.get("profile") or "").strip()
858
+ if profile:
859
+ lines.append(f" profile: {profile}")
860
+ effective_model = str(details.get("effective_model") or details.get("model") or "").strip()
861
+ if effective_model:
862
+ lines.append(f" effective model: {effective_model}")
863
+ provider_wire_api = str(details.get("provider_wire_api") or "").strip()
864
+ if provider_wire_api:
865
+ lines.append(f" provider wire api: {provider_wire_api}")
866
+ if details.get("provider_env_missing"):
867
+ provider_env_key = str(details.get("provider_env_key") or "").strip()
868
+ if provider_env_key:
869
+ lines.append(f" missing provider env: {provider_env_key}")
870
+ probe_command = details.get("probe_command")
871
+ if isinstance(probe_command, list) and probe_command:
872
+ lines.append(f" probe command: {shlex.join(str(part) for part in probe_command)}")
873
+ stdout_excerpt = str(details.get("stdout_excerpt") or "").strip()
874
+ if stdout_excerpt:
875
+ lines.append(f" stdout excerpt: {stdout_excerpt}")
876
+ stderr_excerpt = str(details.get("stderr_excerpt") or "").strip()
877
+ if stderr_excerpt:
878
+ lines.append(f" stderr excerpt: {stderr_excerpt}")
531
879
  latex_pdflatex_path = str(details.get("latex_pdflatex_path") or "").strip()
532
880
  if latex_pdflatex_path:
533
881
  lines.append(f" pdflatex: {latex_pdflatex_path}")
@@ -537,6 +885,9 @@ def render_doctor_report(report: dict[str, Any]) -> str:
537
885
  browser_url = str(details.get("browser_url") or "").strip()
538
886
  if browser_url:
539
887
  lines.append(f" url: {browser_url}")
888
+ daemon_home = str(details.get("daemon_home") or "").strip()
889
+ if daemon_home:
890
+ lines.append(f" daemon home: {daemon_home}")
540
891
  lines.append("")
541
892
 
542
893
  guidance: list[str] = []