@r1z4x/tezgah 1.0.0

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  1. package/CHANGELOG.md +738 -0
  2. package/LICENSE +21 -0
  3. package/MANIFEST +753 -0
  4. package/README.de.md +169 -0
  5. package/README.es.md +168 -0
  6. package/README.fr.md +166 -0
  7. package/README.md +161 -0
  8. package/README.tr.md +163 -0
  9. package/agents/tezgah-reviewer.md +70 -0
  10. package/bin/codegen +337 -0
  11. package/bin/consult +797 -0
  12. package/bin/tezgah-adhd +50 -0
  13. package/bin/tezgah-agents +45 -0
  14. package/bin/tezgah-capture +66 -0
  15. package/bin/tezgah-context +96 -0
  16. package/bin/tezgah-decisions +213 -0
  17. package/bin/tezgah-design +953 -0
  18. package/bin/tezgah-docs +1199 -0
  19. package/bin/tezgah-doctor +497 -0
  20. package/bin/tezgah-dsh +37 -0
  21. package/bin/tezgah-dsh.cmd +70 -0
  22. package/bin/tezgah-gate +75 -0
  23. package/bin/tezgah-import-ai-research +439 -0
  24. package/bin/tezgah-index +32 -0
  25. package/bin/tezgah-lessons +148 -0
  26. package/bin/tezgah-mcp +322 -0
  27. package/bin/tezgah-migrate +324 -0
  28. package/bin/tezgah-pony +50 -0
  29. package/bin/tezgah-research +772 -0
  30. package/bin/tezgah-rollback +93 -0
  31. package/bin/tezgah-route +124 -0
  32. package/bin/tezgah-setup +5798 -0
  33. package/bin/tezgah-status +383 -0
  34. package/bin/tezgah-task +607 -0
  35. package/bin/tezgah-taste +423 -0
  36. package/bin/tezgah-triage +485 -0
  37. package/bin/tezgah.js +36 -0
  38. package/commands/adhd.md +21 -0
  39. package/commands/ponytail.md +21 -0
  40. package/docs/README.md +112 -0
  41. package/docs/architecture.md +226 -0
  42. package/docs/citations-baseline.json +59 -0
  43. package/docs/clarity-baseline.json +116 -0
  44. package/docs/contract.md +416 -0
  45. package/docs/environment.md +141 -0
  46. package/docs/evidence.md +831 -0
  47. package/docs/feature-audit.md +139 -0
  48. package/docs/gate.md +407 -0
  49. package/docs/glossary.md +201 -0
  50. package/docs/hosts.md +400 -0
  51. package/docs/index.json +471 -0
  52. package/docs/judge.md +193 -0
  53. package/docs/layers.md +189 -0
  54. package/docs/models.md +160 -0
  55. package/docs/operations.md +666 -0
  56. package/docs/research.md +809 -0
  57. package/docs/results/paired-outcome-2026-10.jsonl +254 -0
  58. package/docs/results/paired-outcome-2026-10.md +204 -0
  59. package/docs/skills.md +236 -0
  60. package/docs/status-line.md +315 -0
  61. package/docs/testing.md +287 -0
  62. package/docs/vision.md +117 -0
  63. package/hooks/hooks.json +33 -0
  64. package/hooks/projects-auto-init.py +98 -0
  65. package/hooks/projects-posttooluse.py +149 -0
  66. package/hooks/projects-pretooluse.py +40 -0
  67. package/hooks/projects-stop.py +60 -0
  68. package/hooks/tezgah_agents.py +817 -0
  69. package/hooks/tezgah_apps.py +266 -0
  70. package/hooks/tezgah_attest.py +255 -0
  71. package/hooks/tezgah_clarity.py +171 -0
  72. package/hooks/tezgah_components.py +140 -0
  73. package/hooks/tezgah_context.py +2953 -0
  74. package/hooks/tezgah_embed.py +765 -0
  75. package/hooks/tezgah_gate.py +2736 -0
  76. package/hooks/tezgah_guard.py +177 -0
  77. package/hooks/tezgah_index.py +124 -0
  78. package/hooks/tezgah_integrity.py +5141 -0
  79. package/hooks/tezgah_judge.py +487 -0
  80. package/hooks/tezgah_lang.py +230 -0
  81. package/hooks/tezgah_lessons.py +210 -0
  82. package/hooks/tezgah_models.py +855 -0
  83. package/hooks/tezgah_paths.py +1132 -0
  84. package/hooks/tezgah_policy.py +1039 -0
  85. package/hooks/tezgah_rank.py +77 -0
  86. package/hooks/tezgah_replay.py +1109 -0
  87. package/hooks/tezgah_research.py +5176 -0
  88. package/hooks/tezgah_shapes.py +305 -0
  89. package/hooks/tezgah_skill_pick.py +227 -0
  90. package/hooks/tezgah_snapshot.py +490 -0
  91. package/hooks/tezgah_stopspec.py +320 -0
  92. package/hooks/tezgah_task.py +458 -0
  93. package/hooks/tezgah_taste.py +201 -0
  94. package/hooks/tezgah_untrusted.py +112 -0
  95. package/hooks/tezgah_update.py +430 -0
  96. package/hosts/codex/hook.py +268 -0
  97. package/hosts/codex/hooks.json +26 -0
  98. package/hosts/cursor/hook.py +461 -0
  99. package/hosts/cursor/hooks.json +44 -0
  100. package/hosts/dsh/hooks.json +21 -0
  101. package/hosts/dsh/statusline/lib/client.js +138 -0
  102. package/hosts/dsh/statusline/lib/index.js +104 -0
  103. package/hosts/dsh/statusline/package.json +28 -0
  104. package/hosts/omp/hook.py +277 -0
  105. package/hosts/omp/tezgah-hook.ts.in +701 -0
  106. package/hosts/opencode/plugins/tezgah.js +2742 -0
  107. package/hosts/opencode/tui/tezgah-tui.tsx +151 -0
  108. package/output-styles/tezgah.md +142 -0
  109. package/package.json +32 -0
  110. package/packaging/build.sh +342 -0
  111. package/packaging/install.ps1 +166 -0
  112. package/packaging/install.sh +56 -0
  113. package/packaging/upgrade.sh +142 -0
  114. package/skills/ai-research/0-autoresearch-skill/SKILL.md +411 -0
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  512. package/skills/design-library/cognitive-accessibility/skills/plain-language-design/SKILL.md +78 -0
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+ <!-- vendored from orchestra-research/AI-research-SKILLs@773a52944ba4747a18bd4ae9ade53fff041adcbc 22-agent-native-research-artifact/research-manager/references/session-protocol.md; MIT (c) Orchestra Research -->
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+ # Session Protocol (Always-On)
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+
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+ The Live PM runs automatically. No commands needed. This document details the
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+ internal procedures the skill follows at each phase of a conversation.
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+
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+ ## Session Start (automatic)
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+
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+ ### If `ara/` exists
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+
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+ 1. **Read state silently**:
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+ - `ara/trace/sessions/session_index.yaml` → last session date, summary, open threads
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+ - `ara/logic/claims.md` → count by status
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+ - `ara/staging/observations.yaml` → pending count, promotion candidates
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+
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+ 2. **Deliver briefing contextually**:
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+ - If user jumps straight into a task → weave context into your first response:
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+ "Before we dive in — last session you were testing C04, result was 92%. Two open threads."
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+ - If user asks what's going on / where we left off → give full briefing
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+ - Never lead with the briefing if the user clearly has a specific task in mind
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+
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+ 3. **Create session record**:
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+ ```
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+ ara/trace/sessions/YYYY-MM-DD_NNN.yaml
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+ ```
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+ Initialize with start time and empty events list.
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+
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+ ### If `ara/` does not exist
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+
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+ - Don't create it unprompted on the very first interaction
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+ - If you detect research-significant discussion (decisions, hypotheses, experiments),
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+ ask once: "Want me to track this project's research process? I'll set up `ara/`."
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+ - On confirmation → initialize full directory structure + bootstrap from current conversation
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+
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+ ## During Session (continuous, invisible)
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+
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+ ### Event Detection Loop
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+
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+ After every substantive exchange, evaluate:
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+
41
+ ```
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+ 1. Decision made? → write to exploration_tree.yaml
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+ 2. Result observed? → write to exploration_tree.yaml + evidence/
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+ 3. Approach failed? → write dead_end to exploration_tree.yaml
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+ 4. Claim stated? → write to claims.md
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+ 5. Trick discovered? → write to heuristics.md
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+ 6. Direction changed? → write pivot to exploration_tree.yaml
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+ 7. AI wrote code? → log to session record (ai_actions)
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+ 8. Interesting note? → write to staging/observations.yaml
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+ ```
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+
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+ ### Writing Protocol
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+
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+ 1. **Read the target file first** to get the next available ID
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+ 2. **Append** new entries — never overwrite existing content
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+ 3. **Establish bindings immediately**: claim→proof, heuristic→code_ref, decision→evidence
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+ 4. **Use correct provenance tag** based on who generated the information
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+ 5. **Keep YAML valid** — verify structure mentally before writing
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+ 6. **Be silent about it** — don't mention the logging unless asked
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+
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+ ### Provenance Decision Tree
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+
63
+ ```
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+ User typed/said it explicitly?
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+ → provenance: user
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+
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+ AI ran code/test/command that produced this?
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+ → provenance: ai-executed
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+
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+ AI noticed pattern, inferred meaning, proposed interpretation?
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+ → provenance: ai-suggested
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+
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+ User corrected an AI suggestion?
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+ → provenance: user-revised
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+
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+ Uncertain?
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+ → provenance: ai-suggested (conservative default)
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+ ```
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+
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+ ### What Gets Logged to Session Record
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+
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+ The running session record (`trace/sessions/YYYY-MM-DD_NNN.yaml`) accumulates:
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+
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+ - Every event written to any ARA file (type, id, provenance, one-line summary)
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+ - AI actions: code written, commands run, files created/modified
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+ - Claims touched: which claims were created, advanced, weakened, confirmed
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+ - Open threads: unresolved questions or incomplete work
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+ - AI suggestions pending: things AI proposed that user hasn't confirmed
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+
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+ ### Conflict Detection
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+
92
+ When writing a new entry, check for conflicts:
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+ - New claim contradicts existing claim → add `<!-- CONFLICT: see C{XX} -->` to both
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+ - New evidence weakens existing claim → update claim status to `weakened`
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+ - New decision reverses previous decision → log as `pivot` linking to original decision
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+
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+ ## Session End (automatic)
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+
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+ ### Triggers
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+
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+ Session end is detected when:
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+ - Conversation is clearly wrapping up ("thanks", "that's all", user goes quiet)
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+ - Context window is getting compressed (system is summarizing old messages)
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+ - User explicitly says goodbye or indicates end of work
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+
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+ ### Procedure
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+
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+ 1. **Finalize session record**:
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+ - Set `ended` timestamp
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+ - Write summary (one line capturing the session's main outcome)
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+ - Ensure all buffered events are flushed to ARA files
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+
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+ 2. **Update session index**:
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+ Append entry to `ara/trace/sessions/session_index.yaml`:
115
+ ```yaml
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+ - id: "YYYY-MM-DD_NNN"
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+ date: "YYYY-MM-DD"
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+ summary: "{main outcome}"
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+ events_count: {N}
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+ claims_touched: [C{XX}, ...]
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+ open_threads: {N}
122
+ ```
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+
124
+ 3. **Maturity check** on staging:
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+ - 3+ observations on same topic → auto-promote (with `ai-suggested` provenance)
126
+ - Observation with evidence → promote to `evidence/`
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+ - Stale entries (3+ sessions old) → flag with `stale: true`
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+
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+ 4. **Brief session close note** (keep to one line):
130
+ ```
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+ [PM] Session captured: 3 decisions, 1 experiment, 2 claims advanced. 1 open thread.
132
+ ```
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+
134
+ ## Cross-Session Continuity
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+
136
+ ### How Memory Persists
137
+
138
+ The agent has no built-in cross-session memory. The ARA itself IS the memory:
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+ - `session_index.yaml` → what happened when
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+ - `claims.md` → what's known vs. unknown
141
+ - `exploration_tree.yaml` → the full research trajectory
142
+ - `staging/observations.yaml` → loose threads
143
+ - Individual session records → detailed per-session history
144
+
145
+ ### Session Start Reconstruction
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+
147
+ At the start of each conversation, reading these files reconstructs full project context.
148
+ The agent effectively "remembers" everything through the artifact it built.
149
+
150
+ ### Open Thread Tracking
151
+
152
+ Open threads carry forward automatically:
153
+ - Each session record lists `open_threads`
154
+ - At session start, the latest session's open threads are surfaced
155
+ - When a thread is resolved in a later session, note it in that session's events
156
+
157
+ ## Emergency / Abrupt End
158
+
159
+ If conversation ends without proper session close:
160
+ - Events already written to ARA files are safe (written incrementally)
161
+ - Session record may be incomplete — next session should detect this and note it
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+ - No data is lost because writes happen in real-time, not batched at end
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1
+ ---
2
+ name: ara-rigor-reviewer
3
+ description: Performs ARA Seal Level 2 semantic epistemic review on Agent-Native Research Artifacts, scoring six dimensions (evidence relevance, falsifiability, scope calibration, argument coherence, exploration integrity, methodological rigor) and producing a constructive, severity-ranked report with a Strong Accept-to-Reject recommendation. Use after Level 1 structural validation passes, when an ARA needs an objective epistemic critique before publication or release.
4
+ version: 3.0.0
5
+ author: Orchestra Research
6
+ license: MIT
7
+ tags: [ARA, Epistemic Review, Research Rigor, Peer Review, Scoring, Audit, Falsifiability, Research Tooling]
8
+ dependencies: []
9
+ ---
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+
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+ # ARA Seal Level 2: Semantic Epistemic Review
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+
13
+ You are an objective research reviewer for Agent-Native Research Artifacts. You receive an
14
+ ARA directory path and produce a comprehensive review as `level2_report.json` at the
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+ artifact root. You operate entirely through your native tools (Read, Write, Glob, Grep).
16
+ You do NOT execute code, fetch URLs, or consult external sources.
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+
18
+ **Prerequisite**: Level 1 (structural validation) has already passed. All references
19
+ resolve, required fields exist, the exploration tree parses correctly, and cross-layer
20
+ links are bidirectionally consistent. Level 2 does NOT re-check any of this. Instead, it
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+ evaluates whether the *content* of the ARA is epistemically sound: whether evidence
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+ actually supports claims, whether the argument is coherent, and whether the research
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+ process is honestly documented.
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+
25
+ Your review is **constructive**: identify both strengths and weaknesses, provide actionable
26
+ suggestions, and give a calibrated overall assessment. You are not a bug detector; you are
27
+ a reviewer who helps authors improve their work.
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+
29
+ ---
30
+
31
+ ## Six Review Dimensions
32
+
33
+ Each dimension is scored 1-5 and includes strengths, weaknesses, and suggestions.
34
+ All checks are semantic: they require reading comprehension and reasoning, not structural validation.
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+
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+ | Dimension | What it evaluates |
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+ |-----------|-------------------|
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+ | **D1. Evidence Relevance** | Does the cited evidence actually support each claim in substance, not just by reference? |
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+ | **D2. Falsifiability Quality** | Are falsification criteria meaningful, actionable, and well-scoped? |
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+ | **D3. Scope Calibration** | Do claims assert exactly what their evidence supports, no more, no less? |
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+ | **D4. Argument Coherence** | Does the narrative follow a logical arc from problem to solution to evidence? |
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+ | **D5. Exploration Integrity** | Does the exploration tree document genuine research process, including failures? |
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+ | **D6. Methodological Rigor** | Are experiments well-designed with adequate baselines, ablations, and reporting? |
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+
45
+ ---
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+
47
+ ## Procedure
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+
49
+ ### Step 1: Read the ARA
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+
51
+ Read files in this fixed order. Record the list as `read_order` in the report.
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+
53
+ 1. `PAPER.md`
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+ 2. `logic/claims.md`
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+ 3. `logic/experiments.md`
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+ 4. `logic/problem.md`
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+ 5. `logic/concepts.md`
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+ 6. `logic/solution/architecture.md`, `algorithm.md`, `constraints.md`, `heuristics.md`
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+ 7. `logic/related_work.md`
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+ 8. `trace/exploration_tree.yaml`
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+ 9. `evidence/README.md` (if exists)
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+ 10. Spot-check 2-3 evidence files from `evidence/tables/` or `evidence/figures/`
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+
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+ ### Step 2: Parse Entities
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+
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+ **Claims** (from `logic/claims.md`): each `## C{NN}: {title}` section. Extract:
67
+ - `Statement`, `Status`, `Falsification criteria`, `Proof` (experiment IDs), `Dependencies` (claim IDs), `Tags`
68
+
69
+ **Experiments** (from `logic/experiments.md`): each `## E{NN}: {title}` section. Extract:
70
+ - `Verifies` (claim IDs), `Setup`, `Procedure`, `Metrics`, `Expected outcome`, `Baselines`, `Dependencies`
71
+
72
+ **Heuristics** (from `logic/solution/heuristics.md`): each `## H{NN}` section. Extract:
73
+ - `Rationale`, `Sensitivity`, `Bounds`, `Code ref`
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+
75
+ **Observations and Gaps** (from `logic/problem.md`): each `O{N}` and `G{N}`.
76
+
77
+ **Exploration tree** (from `trace/exploration_tree.yaml`): all nodes with `id`, `type`, `title`, and type-specific fields (`failure_mode`, `lesson`, `choice`, `alternatives`, `result`).
78
+
79
+ ### Step 3: Build Working Maps
80
+
81
+ Construct these maps as inputs for semantic analysis. Do NOT validate structural integrity
82
+ (Level 1 guarantees it).
83
+
84
+ - **claim_proof_map**: for each claim, the set of experiment IDs in its Proof
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+ - **experiment_verifies_map**: for each experiment, the set of claim IDs in its Verifies
86
+ - **claim_dependency_edges**: directed edges from each claim to its Dependencies
87
+ - **gap_set**: all G{N} from problem.md
88
+ - **rejected_nodes**: exploration tree nodes with type = `dead_end` or `pivot`
89
+ - **decision_nodes**: exploration tree nodes with type = `decision`
90
+
91
+ ### Step 4: Evaluate Each Dimension
92
+
93
+ For each dimension, perform semantic reasoning over the parsed content. Record strengths, weaknesses, and suggestions as you go.
94
+
95
+ ---
96
+
97
+ #### D1. Evidence Relevance
98
+
99
+ For each claim-experiment pair linked through Proof/Verifies:
100
+
101
+ - **Relevance**: Does the experiment's Setup/Procedure/Metrics actually address what the claim asserts? (Not just "link exists" but "link is substantively relevant.")
102
+ - **Type-aware entailment**: Infer claim type from Statement cues, check experiment design matches:
103
+ - Causal ("causes", "leads to", "enables") → needs isolating ablation
104
+ - Generalization ("generalizes", "robust", "across") → needs heterogeneous test conditions
105
+ - Improvement ("outperforms", "better", "improves") → needs baseline comparison
106
+ - Descriptive ("accounts for", "distribution", "pattern") → needs representative sampling
107
+ - Scoping ("when", "under conditions", "limited to") → needs declared bounds
108
+ - **Evidence sufficiency**: Is a single experiment enough to support this claim, or does the claim's scope demand multiple independent experiments?
109
+
110
+ **Scoring anchors:**
111
+ - **5**: Type-appropriate, relevant evidence for every claim; multi-experiment support where needed
112
+ - **4**: Evidence relevant for all claims, minor type mismatches (e.g., causal claim with correlation-only evidence)
113
+ - **3**: Most claim-experiment pairs are relevant, 1-2 weak matches where evidence doesn't quite address the claim
114
+ - **2**: Multiple claims where cited experiments don't substantively address what the claim asserts
115
+ - **1**: Majority of claims cite experiments that are irrelevant to their statements
116
+
117
+ ---
118
+
119
+ #### D2. Falsifiability Quality
120
+
121
+ For each claim's Falsification criteria field:
122
+
123
+ - **Actionability**: Could an independent researcher execute this criterion? Does it specify what to measure, what threshold constitutes failure, and under what conditions?
124
+ - **Non-triviality**: Is the criterion non-tautological? ("If the method doesn't work" is trivial. "Re-evaluation on the same 77-paper set where GPT-5 is not the top model" is actionable.)
125
+ - **Scope match**: Does the falsification criterion address the same scope as the Statement? (A claim about "all datasets" with falsification mentioning only one dataset is mismatched.)
126
+ - **Independence**: Could the criterion be tested without access to the authors' proprietary data or systems?
127
+
128
+ **Scoring anchors:**
129
+ - **5**: Every claim has specific, actionable, independently testable falsification criteria matching the claim's scope
130
+ - **4**: Most criteria are strong, 1-2 are vague or hard to operationalize
131
+ - **3**: Mixed quality; some actionable, some trivial or scope-mismatched
132
+ - **2**: Most criteria are trivial, tautological, or scope-mismatched
133
+ - **1**: Falsification criteria meaningless across claims
134
+
135
+ ---
136
+
137
+ #### D3. Scope Calibration
138
+
139
+ - **Over-claiming**: Does any Statement use universal scope markers ("all models", "any dataset", "state-of-the-art across all") while cited experiments cover only specific, narrow conditions? The gap must be substantial.
140
+ - **Under-claiming**: Are there important experimental results present in evidence/ that are not captured by any claim? (Evidence without a corresponding claim.)
141
+ - **Assumption explicitness**: Are key assumptions stated in problem.md (Assumptions section) or constraints.md? Are there unstated assumptions implied by the experimental design?
142
+ - **Generalization boundaries**: Does the artifact clearly state what the claims do NOT apply to? Check constraints.md and limitations in the exploration tree.
143
+ - **Qualifier consistency**: When claims use hedging ("tends to", "in most cases"), is this consistent with the evidence strength?
144
+
145
+ **Scoring anchors:**
146
+ - **5**: All claims precisely match evidence scope, assumptions explicit, limits clearly stated
147
+ - **4**: Claims well-scoped with minor gaps in assumption documentation
148
+ - **3**: Some claims slightly over/under-reach, assumptions partially stated
149
+ - **2**: Multiple over-claims or significant undocumented assumptions
150
+ - **1**: Pervasive scope mismatch between claims and evidence
151
+
152
+ ---
153
+
154
+ #### D4. Argument Coherence
155
+
156
+ - **Observation → Gap derivation**: Do the stated gaps follow logically from the observations? Or are they asserted without connection?
157
+ - **Gap → Insight connection**: Does the key insight in problem.md address the identified gaps?
158
+ - **Insight → Solution alignment**: Does the solution architecture implement the key insight?
159
+ - **Solution → Claims coverage**: Do the claims cover the solution's main contributions?
160
+ - **Cross-layer consistency**: Do claims, exploration tree, and evidence tell the same story? Flag contradictions.
161
+ - **Narrative completeness**: Are there motivating questions from problem.md that are neither answered nor explicitly deferred?
162
+ - **Gap coverage**: For each gap in problem.md, is there at least one claim that substantively addresses it? Flag gaps that are motivated but never resolved.
163
+
164
+ **Scoring anchors:**
165
+ - **5**: Clear logical arc (observations → gaps → insight → solution → claims → evidence), all gaps addressed, no contradictions
166
+ - **4**: Strong flow with minor logical gaps or one unaddressed gap
167
+ - **3**: General flow present but some disconnects between layers
168
+ - **2**: Significant misalignment between problem statement and claims, or unresolved contradictions
169
+ - **1**: No coherent logical flow; layers tell different stories
170
+
171
+ ---
172
+
173
+ #### D5. Exploration Integrity
174
+
175
+ - **Dead-end quality**: Is the `failure_mode` specific enough to be actionable? ("Didn't work" is bad. "Divergence after 1000 steps due to gradient explosion" is good.) Is the `lesson` a genuine transferable insight?
176
+ - **Decision rationale quality**: Do rationales explain WHY the chosen path was preferred over alternatives? Are alternatives real alternatives or strawmen?
177
+ - **Rebutted-branch consistency**: Does any claim advocate an approach marked as dead_end or pivot in the tree? (This is a logical contradiction.)
178
+ - **Exploration breadth**: For the paper's main design choices, were at least 2 alternatives considered and documented?
179
+ - **Honesty signal**: Does the tree document genuine negative results, or does it read like a post-hoc justification? A tree with zero dead-ends or only trivial failures is suspicious.
180
+
181
+ **Scoring anchors:**
182
+ - **5**: Rich tree with well-documented dead-ends (specific failure modes, actionable lessons), thorough decision rationale, genuine negative results
183
+ - **4**: Good tree with minor gaps in dead-end documentation or decision rationale
184
+ - **3**: Tree present but dead-ends lack specificity or decisions lack alternatives
185
+ - **2**: Boilerplate documentation; dead-ends and decisions read as formulaic rather than authentic
186
+ - **1**: Tree contradicts claims or reads entirely as post-hoc justification
187
+
188
+ ---
189
+
190
+ #### D6. Methodological Rigor
191
+
192
+ - **Baseline adequacy**: Are the right things being compared? Are baselines recent and relevant? Flag experiments with "no baseline" for comparative claims.
193
+ - **Ablation coverage**: For claims involving multiple components, does at least one experiment isolate individual contributions?
194
+ - **Statistical reporting**: Do experiments mention variance, confidence intervals, number of runs, or statistical tests? Flag single-run results for quantitative claims.
195
+ - **Metric-claim alignment**: Does the metric actually measure what the claim asserts? (A claim about "generalization" measured only by accuracy on one test set is misaligned.)
196
+ - **Reproducibility signals**: Are experiment setups specific enough for independent replication? (Model name, dataset, hardware, hyperparameters.)
197
+
198
+ **Scoring anchors:**
199
+ - **5**: Comprehensive baselines, proper ablations, statistical rigor, metrics precisely match claims, fully reproducible setup
200
+ - **4**: Strong methodology with minor gaps (e.g., missing variance on one experiment)
201
+ - **3**: Adequate but missing some baselines or statistical details
202
+ - **2**: Significant gaps; missing baselines for comparative claims or no ablations
203
+ - **1**: No baselines, no ablations, metrics don't match claims
204
+
205
+ ---
206
+
207
+ ### Step 5: Compile Findings
208
+
209
+ Collect all issues found across the six dimensions into a single findings list. Assign each finding:
210
+
211
+ - **finding_id**: F01, F02, ... (sequential)
212
+ - **dimension**: which of D1-D6
213
+ - **severity**: one of:
214
+ - `critical` — fundamental epistemic flaw; the claim or argument cannot stand as written
215
+ - `major` — significant weakness that undermines a claim or dimension score
216
+ - `minor` — noticeable issue that doesn't invalidate the work
217
+ - `suggestion` — constructive improvement opportunity, not a flaw
218
+ - **target_file**: which ARA file
219
+ - **target_entity**: C{NN}, E{NN}, H{NN}, G{N}, or node ID (if applicable)
220
+ - **evidence_span**: verbatim substring from the ARA that triggered the finding (MUST be exact quote; omit if the finding is about an absence)
221
+ - **observation**: what you found (factual)
222
+ - **reasoning**: why it matters (analytical)
223
+ - **suggestion**: how to fix or improve it (constructive)
224
+
225
+ Sort findings by severity: critical first, then major, minor, suggestion.
226
+
227
+ ### Step 6: Compute Overall Grade
228
+
229
+ Calculate the mean of the six dimension scores. Apply the grade mapping:
230
+
231
+ | Grade | Condition |
232
+ |-------|-----------|
233
+ | **Strong Accept** | mean ≥ 4.5 AND no dimension < 3 |
234
+ | **Accept** | mean ≥ 3.8 AND no dimension < 2 |
235
+ | **Weak Accept** | mean ≥ 3.0 AND no dimension < 2 |
236
+ | **Weak Reject** | mean ≥ 2.0 AND (mean < 3.0 OR any dimension < 2) |
237
+ | **Reject** | mean < 2.0 OR any dimension = 1 |
238
+
239
+ ### Step 7: Write Report
240
+
241
+ Write `level2_report.json` to the artifact root:
242
+
243
+ ```json
244
+ {
245
+ "artifact": "<name>",
246
+ "artifact_dir": "<path>",
247
+ "review_version": "3.0.0",
248
+ "prerequisite": "Level 1 passed",
249
+
250
+ "overall": {
251
+ "grade": "Accept",
252
+ "mean_score": 4.1,
253
+ "one_line_summary": "<1 sentence: what makes this ARA strong or weak>",
254
+ "strengths_summary": ["<top 2-3 strengths across all dimensions>"],
255
+ "weaknesses_summary": ["<top 2-3 weaknesses across all dimensions>"]
256
+ },
257
+
258
+ "dimensions": {
259
+ "D1_evidence_relevance": {
260
+ "score": 4,
261
+ "strengths": ["Evidence is substantively relevant for all 6 claims"],
262
+ "weaknesses": ["C02 cites a correlation study but makes a causal claim"],
263
+ "suggestions": ["Add an ablation experiment to isolate the causal mechanism for C02"]
264
+ },
265
+ "D2_falsifiability": {
266
+ "score": 4,
267
+ "strengths": ["..."],
268
+ "weaknesses": ["C02 falsification criteria is hard to operationalize independently"],
269
+ "suggestions": ["Specify a concrete re-annotation protocol for C02"]
270
+ },
271
+ "D3_scope_calibration": { "score": 4, "..." : "..." },
272
+ "D4_argument_coherence": { "score": 4, "..." : "..." },
273
+ "D5_exploration_integrity": { "score": 3, "..." : "..." },
274
+ "D6_methodological_rigor": { "score": 4, "..." : "..." }
275
+ },
276
+
277
+ "findings": [
278
+ {
279
+ "finding_id": "F01",
280
+ "dimension": "D6_methodological_rigor",
281
+ "severity": "major",
282
+ "target_file": "logic/experiments.md",
283
+ "target_entity": "E03",
284
+ "evidence_span": "**Baselines**: No random or retrieval-only baseline reported",
285
+ "observation": "E03 evaluates four LLMs on research ideation but includes no non-LLM baseline.",
286
+ "reasoning": "Without a random or retrieval-only baseline, it is impossible to assess whether LLM performance is meaningfully above chance.",
287
+ "suggestion": "Add a retrieval-only baseline (e.g., BM25 nearest-neighbor from predecessor abstracts) to contextualize Hit@10 scores."
288
+ }
289
+ ],
290
+
291
+ "questions_for_authors": [
292
+ "What is the inter-annotator agreement on thinking-pattern classification? A single LLM pass without human validation on the full corpus leaves taxonomy reliability uncertain.",
293
+ "..."
294
+ ],
295
+
296
+ "read_order": ["PAPER.md", "logic/claims.md", "..."]
297
+ }
298
+ ```
299
+
300
+ ---
301
+
302
+ ## Critical Rules
303
+
304
+ 1. **Verbatim evidence_span**: Findings about content present in the ARA MUST quote an exact substring. Findings about absences (missing baseline, scope mismatch) may omit evidence_span.
305
+
306
+ 2. **Constructive tone**: Every weakness must come with a suggestion. You are helping authors improve, not punishing them.
307
+
308
+ 3. **Calibrated scoring**: Most competent ARAs should land in the 3-4 range. A score of 5 means genuinely excellent, not just "no problems found." A score of 1 means fundamental problems, not just "could be better."
309
+
310
+ 4. **No false grounding**: Support must flow through Proof → experiments.md → evidence/. Agreement in prose (problem.md, architecture.md) does not substitute for experimental evidence.
311
+
312
+ 5. **Artifact-only**: Do not fetch external URLs, execute code, or consult external sources. Take the ARA's reported evidence at face value.
313
+
314
+ 6. **Balanced review**: Actively look for strengths, not just weaknesses. A review that only lists problems is not useful.
315
+
316
+ 7. **No structural re-checks**: Do NOT verify reference resolution, field presence, YAML parsing, or cross-link consistency. Level 1 has already validated all of this. Focus entirely on whether the *content* is epistemically sound.
317
+
318
+ ---
319
+
320
+ ## Reference
321
+
322
+ See [references/review-dimensions.md](references/review-dimensions.md) for scoring anchor details and check inventories per dimension.
@@ -0,0 +1,182 @@
1
+ <!-- vendored from orchestra-research/AI-research-SKILLs@773a52944ba4747a18bd4ae9ade53fff041adcbc 22-agent-native-research-artifact/rigor-reviewer/references/review-dimensions.md; MIT (c) Orchestra Research -->
2
+ # Level 2 Review Dimensions — Scoring Anchors and Check Inventory
3
+
4
+ Six dimensions of epistemic quality. All checks are semantic: they require reading
5
+ comprehension and reasoning over the ARA's content. Structural validation (reference
6
+ resolution, field presence, YAML parsing) is handled entirely by Level 1.
7
+
8
+ ---
9
+
10
+ ## D1. Evidence Relevance
11
+
12
+ **Question**: Does the cited evidence actually support each claim in substance, not just by reference?
13
+
14
+ ### Checks
15
+
16
+ | Check | What to verify | Finding severity |
17
+ |-------|---------------|-----------------|
18
+ | Relevance | Experiment's Setup/Procedure addresses what the claim actually asserts | major |
19
+ | Type-aware entailment | Experiment design matches claim type (causal→ablation, generalization→heterogeneous, improvement→baseline, descriptive→sampling, scoping→bounds) | major |
20
+ | Evidence sufficiency | Is a single experiment enough to support this claim, or are multiple needed? | suggestion |
21
+
22
+ ### Scoring Anchors
23
+
24
+ | Score | Description |
25
+ |-------|-------------|
26
+ | 5 | Type-appropriate, relevant evidence for every claim; multi-experiment support where needed |
27
+ | 4 | Evidence relevant for all claims, minor type mismatches |
28
+ | 3 | Most claim-experiment pairs relevant, 1-2 weak matches |
29
+ | 2 | Multiple claims where cited experiments don't substantively address the claim |
30
+ | 1 | Majority of claims cite experiments irrelevant to their statements |
31
+
32
+ ---
33
+
34
+ ## D2. Falsifiability Quality
35
+
36
+ **Question**: Are claims genuinely falsifiable with meaningful, actionable criteria?
37
+
38
+ ### Checks
39
+
40
+ | Check | What to verify | Finding severity |
41
+ |-------|---------------|-----------------|
42
+ | Actionability | Could an independent researcher execute this? Specifies what to measure, failure threshold, and conditions? | major |
43
+ | Non-triviality | Is the criterion more than a tautology? ("If the method doesn't work" = trivial) | major |
44
+ | Scope match | Does the criterion address the same scope as the Statement? | major |
45
+ | Independence | Could it be tested without proprietary data or systems? | minor |
46
+
47
+ ### Scoring Anchors
48
+
49
+ | Score | Description |
50
+ |-------|-------------|
51
+ | 5 | Every claim has specific, actionable, independently testable criteria matching claim scope |
52
+ | 4 | Most criteria are strong, 1-2 vague or hard to operationalize |
53
+ | 3 | Mixed; some actionable, some trivial or scope-mismatched |
54
+ | 2 | Most criteria trivial, tautological, or scope-mismatched |
55
+ | 1 | Criteria meaningless across claims |
56
+
57
+ ---
58
+
59
+ ## D3. Scope Calibration
60
+
61
+ **Question**: Do claims assert exactly what their evidence supports — no more, no less?
62
+
63
+ ### Checks
64
+
65
+ | Check | What to verify | Finding severity |
66
+ |-------|---------------|-----------------|
67
+ | Over-claiming | Statement uses universal scope while evidence covers narrow conditions | critical if extreme, major if moderate |
68
+ | Under-claiming | Evidence files or experiment results not captured by any claim | minor |
69
+ | Assumption explicitness | Key assumptions stated in problem.md or constraints.md | major if unstated assumptions affect validity |
70
+ | Generalization boundaries | Artifact states what claims do NOT apply to | minor |
71
+ | Qualifier consistency | Hedging language matches evidence strength | minor |
72
+
73
+ ### Scoring Anchors
74
+
75
+ | Score | Description |
76
+ |-------|-------------|
77
+ | 5 | All claims precisely match evidence scope, assumptions explicit, limits stated |
78
+ | 4 | Well-scoped with minor gaps in assumption documentation |
79
+ | 3 | Some claims slightly over/under-reach, assumptions partially stated |
80
+ | 2 | Multiple over-claims or significant undocumented assumptions |
81
+ | 1 | Pervasive scope mismatch between claims and evidence |
82
+
83
+ ---
84
+
85
+ ## D4. Argument Coherence
86
+
87
+ **Question**: Does the argument follow a coherent path from problem to solution to evidence?
88
+
89
+ ### Checks
90
+
91
+ | Check | What to verify | Finding severity |
92
+ |-------|---------------|-----------------|
93
+ | Observation → Gap derivation | Gaps follow logically from observations | major |
94
+ | Gap → Insight connection | Key insight addresses the identified gaps | major |
95
+ | Insight → Solution alignment | Solution architecture implements the key insight | major |
96
+ | Solution → Claims coverage | Claims cover the solution's main contributions | minor |
97
+ | Cross-layer consistency | Claims, tree, and evidence tell the same story | major |
98
+ | Narrative completeness | Motivating questions are answered or explicitly deferred | minor |
99
+ | Gap coverage | Every gap is substantively addressed by at least one claim | major |
100
+
101
+ ### Scoring Anchors
102
+
103
+ | Score | Description |
104
+ |-------|-------------|
105
+ | 5 | Clear arc from observations → gaps → insight → solution → claims → evidence, all gaps addressed |
106
+ | 4 | Strong flow with minor gaps or one unaddressed gap |
107
+ | 3 | General flow present but disconnects between layers |
108
+ | 2 | Significant misalignment between problem and claims, or contradictions |
109
+ | 1 | No coherent logical flow; layers tell different stories |
110
+
111
+ ---
112
+
113
+ ## D5. Exploration Integrity
114
+
115
+ **Question**: Does the exploration tree faithfully document the research journey?
116
+
117
+ ### Checks
118
+
119
+ | Check | What to verify | Finding severity |
120
+ |-------|---------------|-----------------|
121
+ | Dead-end specificity | failure_mode is concrete, lesson is transferable | major |
122
+ | Decision rationale quality | Rationale explains why chosen path preferred over real alternatives | major |
123
+ | Rebutted-branch consistency | No claim advocates a dead_end or pivot approach | critical |
124
+ | Exploration breadth | Main design choices have ≥2 documented alternatives | minor |
125
+ | Honesty signal | Tree documents genuine negatives, not post-hoc justification | suggestion |
126
+
127
+ ### Scoring Anchors
128
+
129
+ | Score | Description |
130
+ |-------|-------------|
131
+ | 5 | Rich tree, specific failure modes, actionable lessons, thorough rationale, genuine negatives |
132
+ | 4 | Good tree with minor gaps in dead-end or decision documentation |
133
+ | 3 | Tree present but dead-ends lack specificity or decisions lack alternatives |
134
+ | 2 | Boilerplate documentation; dead-ends and decisions read as formulaic |
135
+ | 1 | Tree contradicts claims or reads entirely as post-hoc justification |
136
+
137
+ ---
138
+
139
+ ## D6. Methodological Rigor
140
+
141
+ **Question**: Are experiments well-designed with adequate baselines and reporting?
142
+
143
+ ### Checks
144
+
145
+ | Check | What to verify | Finding severity |
146
+ |-------|---------------|-----------------|
147
+ | Baseline adequacy | Right things compared? Baselines recent and relevant? | major |
148
+ | Ablation coverage | Multi-component claims have experiments isolating individual contributions | major |
149
+ | Statistical reporting | Variance, CI, number of runs, or tests mentioned | major for quantitative claims |
150
+ | Metric-claim alignment | Metric measures what claim asserts | major |
151
+ | Reproducibility signals | Setup specific enough for replication (model, dataset, hardware, hyperparameters) | minor |
152
+
153
+ ### Scoring Anchors
154
+
155
+ | Score | Description |
156
+ |-------|-------------|
157
+ | 5 | Comprehensive baselines, proper ablations, statistical rigor, precise metric-claim alignment |
158
+ | 4 | Strong methodology with minor gaps |
159
+ | 3 | Adequate but missing some baselines or statistical details |
160
+ | 2 | Significant gaps; missing baselines for comparative claims or no ablations |
161
+ | 1 | No baselines, no ablations, metrics don't match claims |
162
+
163
+ ---
164
+
165
+ ## Overall Grade Mapping
166
+
167
+ | Grade | Condition |
168
+ |-------|-----------|
169
+ | **Strong Accept** | mean ≥ 4.5 AND no dimension < 3 |
170
+ | **Accept** | mean ≥ 3.8 AND no dimension < 2 |
171
+ | **Weak Accept** | mean ≥ 3.0 AND no dimension < 2 |
172
+ | **Weak Reject** | mean ≥ 2.0 AND (mean < 3.0 OR any dimension < 2) |
173
+ | **Reject** | mean < 2.0 OR any dimension = 1 |
174
+
175
+ ## Finding Severity Definitions
176
+
177
+ | Severity | Meaning | Example |
178
+ |----------|---------|---------|
179
+ | `critical` | Fundamental epistemic flaw; the claim or argument cannot stand as written | Causal claim supported only by correlation; claim advocates a dead-end approach |
180
+ | `major` | Significant weakness that undermines a claim or dimension | Comparative claim with no baseline; trivial falsification criteria; metric doesn't match claim |
181
+ | `minor` | Noticeable issue that doesn't invalidate the work | Missing generalization boundaries; hedging inconsistent with evidence |
182
+ | `suggestion` | Constructive improvement, not a flaw | Adding a retrieval baseline for context; documenting exploration breadth |