@r1z4x/tezgah 1.0.0

package/skills/ai-research/15-rag/chroma/SKILL.md

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+---
+name: chroma
+description: Open-source embedding database for AI applications. Store embeddings and metadata, perform vector and full-text search, filter by metadata. Simple 4-function API. Scales from notebooks to production clusters. Use for semantic search, RAG applications, or document retrieval. Best for local development and open-source projects.
+version: 1.0.0
+author: Orchestra Research
+license: MIT
+tags: [RAG, Chroma, Vector Database, Embeddings, Semantic Search, Open Source, Self-Hosted, Document Retrieval, Metadata Filtering]
+dependencies: [chromadb, sentence-transformers]
+---
+
+# Chroma - Open-Source Embedding Database
+
+The AI-native database for building LLM applications with memory.
+
+## When to use Chroma
+
+**Use Chroma when:**
+- Building RAG (retrieval-augmented generation) applications
+- Need local/self-hosted vector database
+- Want open-source solution (Apache 2.0)
+- Prototyping in notebooks
+- Semantic search over documents
+- Storing embeddings with metadata
+
+**Metrics**:
+- **24,300+ GitHub stars**
+- **1,900+ forks**
+- **v1.3.3** (stable, weekly releases)
+- **Apache 2.0 license**
+
+**Use alternatives instead**:
+- **Pinecone**: Managed cloud, auto-scaling
+- **FAISS**: Pure similarity search, no metadata
+- **Weaviate**: Production ML-native database
+- **Qdrant**: High performance, Rust-based
+
+## Quick start
+
+### Installation
+
+```bash
+# Python
+pip install chromadb
+
+# JavaScript/TypeScript
+npm install chromadb @chroma-core/default-embed
+```
+
+### Basic usage (Python)
+
+```python
+import chromadb
+
+# Create client
+client = chromadb.Client()
+
+# Create collection
+collection = client.create_collection(name="my_collection")
+
+# Add documents
+collection.add(
+    documents=["This is document 1", "This is document 2"],
+    metadatas=[{"source": "doc1"}, {"source": "doc2"}],
+    ids=["id1", "id2"]
+)
+
+# Query
+results = collection.query(
+    query_texts=["document about topic"],
+    n_results=2
+)
+
+print(results)
+```
+
+## Core operations
+
+### 1. Create collection
+
+```python
+# Simple collection
+collection = client.create_collection("my_docs")
+
+# With custom embedding function
+from chromadb.utils import embedding_functions
+
+openai_ef = embedding_functions.OpenAIEmbeddingFunction(
+    api_key="your-key",
+    model_name="text-embedding-3-small"
+)
+
+collection = client.create_collection(
+    name="my_docs",
+    embedding_function=openai_ef
+)
+
+# Get existing collection
+collection = client.get_collection("my_docs")
+
+# Delete collection
+client.delete_collection("my_docs")
+```
+
+### 2. Add documents
+
+```python
+# Add with auto-generated IDs
+collection.add(
+    documents=["Doc 1", "Doc 2", "Doc 3"],
+    metadatas=[
+        {"source": "web", "category": "tutorial"},
+        {"source": "pdf", "page": 5},
+        {"source": "api", "timestamp": "2025-01-01"}
+    ],
+    ids=["id1", "id2", "id3"]
+)
+
+# Add with custom embeddings
+collection.add(
+    embeddings=[[0.1, 0.2, ...], [0.3, 0.4, ...]],
+    documents=["Doc 1", "Doc 2"],
+    ids=["id1", "id2"]
+)
+```
+
+### 3. Query (similarity search)
+
+```python
+# Basic query
+results = collection.query(
+    query_texts=["machine learning tutorial"],
+    n_results=5
+)
+
+# Query with filters
+results = collection.query(
+    query_texts=["Python programming"],
+    n_results=3,
+    where={"source": "web"}
+)
+
+# Query with metadata filters
+results = collection.query(
+    query_texts=["advanced topics"],
+    where={
+        "$and": [
+            {"category": "tutorial"},
+            {"difficulty": {"$gte": 3}}
+        ]
+    }
+)
+
+# Access results
+print(results["documents"])      # List of matching documents
+print(results["metadatas"])      # Metadata for each doc
+print(results["distances"])      # Similarity scores
+print(results["ids"])            # Document IDs
+```
+
+### 4. Get documents
+
+```python
+# Get by IDs
+docs = collection.get(
+    ids=["id1", "id2"]
+)
+
+# Get with filters
+docs = collection.get(
+    where={"category": "tutorial"},
+    limit=10
+)
+
+# Get all documents
+docs = collection.get()
+```
+
+### 5. Update documents
+
+```python
+# Update document content
+collection.update(
+    ids=["id1"],
+    documents=["Updated content"],
+    metadatas=[{"source": "updated"}]
+)
+```
+
+### 6. Delete documents
+
+```python
+# Delete by IDs
+collection.delete(ids=["id1", "id2"])
+
+# Delete with filter
+collection.delete(
+    where={"source": "outdated"}
+)
+```
+
+## Persistent storage
+
+```python
+# Persist to disk
+client = chromadb.PersistentClient(path="./chroma_db")
+
+collection = client.create_collection("my_docs")
+collection.add(documents=["Doc 1"], ids=["id1"])
+
+# Data persisted automatically
+# Reload later with same path
+client = chromadb.PersistentClient(path="./chroma_db")
+collection = client.get_collection("my_docs")
+```
+
+## Embedding functions
+
+### Default (Sentence Transformers)
+
+```python
+# Uses sentence-transformers by default
+collection = client.create_collection("my_docs")
+# Default model: all-MiniLM-L6-v2
+```
+
+### OpenAI
+
+```python
+from chromadb.utils import embedding_functions
+
+openai_ef = embedding_functions.OpenAIEmbeddingFunction(
+    api_key="your-key",
+    model_name="text-embedding-3-small"
+)
+
+collection = client.create_collection(
+    name="openai_docs",
+    embedding_function=openai_ef
+)
+```
+
+### HuggingFace
+
+```python
+huggingface_ef = embedding_functions.HuggingFaceEmbeddingFunction(
+    api_key="your-key",
+    model_name="sentence-transformers/all-mpnet-base-v2"
+)
+
+collection = client.create_collection(
+    name="hf_docs",
+    embedding_function=huggingface_ef
+)
+```
+
+### Custom embedding function
+
+```python
+from chromadb import Documents, EmbeddingFunction, Embeddings
+
+class MyEmbeddingFunction(EmbeddingFunction):
+    def __call__(self, input: Documents) -> Embeddings:
+        # Your embedding logic
+        return embeddings
+
+my_ef = MyEmbeddingFunction()
+collection = client.create_collection(
+    name="custom_docs",
+    embedding_function=my_ef
+)
+```
+
+## Metadata filtering
+
+```python
+# Exact match
+results = collection.query(
+    query_texts=["query"],
+    where={"category": "tutorial"}
+)
+
+# Comparison operators
+results = collection.query(
+    query_texts=["query"],
+    where={"page": {"$gt": 10}}  # $gt, $gte, $lt, $lte, $ne
+)
+
+# Logical operators
+results = collection.query(
+    query_texts=["query"],
+    where={
+        "$and": [
+            {"category": "tutorial"},
+            {"difficulty": {"$lte": 3}}
+        ]
+    }  # Also: $or
+)
+
+# Contains
+results = collection.query(
+    query_texts=["query"],
+    where={"tags": {"$in": ["python", "ml"]}}
+)
+```
+
+## LangChain integration
+
+```python
+from langchain_chroma import Chroma
+from langchain_openai import OpenAIEmbeddings
+from langchain.text_splitter import RecursiveCharacterTextSplitter
+
+# Split documents
+text_splitter = RecursiveCharacterTextSplitter(chunk_size=1000)
+docs = text_splitter.split_documents(documents)
+
+# Create Chroma vector store
+vectorstore = Chroma.from_documents(
+    documents=docs,
+    embedding=OpenAIEmbeddings(),
+    persist_directory="./chroma_db"
+)
+
+# Query
+results = vectorstore.similarity_search("machine learning", k=3)
+
+# As retriever
+retriever = vectorstore.as_retriever(search_kwargs={"k": 5})
+```
+
+## LlamaIndex integration
+
+```python
+from llama_index.vector_stores.chroma import ChromaVectorStore
+from llama_index.core import VectorStoreIndex, StorageContext
+import chromadb
+
+# Initialize Chroma
+db = chromadb.PersistentClient(path="./chroma_db")
+collection = db.get_or_create_collection("my_collection")
+
+# Create vector store
+vector_store = ChromaVectorStore(chroma_collection=collection)
+storage_context = StorageContext.from_defaults(vector_store=vector_store)
+
+# Create index
+index = VectorStoreIndex.from_documents(
+    documents,
+    storage_context=storage_context
+)
+
+# Query
+query_engine = index.as_query_engine()
+response = query_engine.query("What is machine learning?")
+```
+
+## Server mode
+
+```python
+# Run Chroma server
+# Terminal: chroma run --path ./chroma_db --port 8000
+
+# Connect to server
+import chromadb
+from chromadb.config import Settings
+
+client = chromadb.HttpClient(
+    host="localhost",
+    port=8000,
+    settings=Settings(anonymized_telemetry=False)
+)
+
+# Use as normal
+collection = client.get_or_create_collection("my_docs")
+```
+
+## Best practices
+
+1. **Use persistent client** - Don't lose data on restart
+2. **Add metadata** - Enables filtering and tracking
+3. **Batch operations** - Add multiple docs at once
+4. **Choose right embedding model** - Balance speed/quality
+5. **Use filters** - Narrow search space
+6. **Unique IDs** - Avoid collisions
+7. **Regular backups** - Copy chroma_db directory
+8. **Monitor collection size** - Scale up if needed
+9. **Test embedding functions** - Ensure quality
+10. **Use server mode for production** - Better for multi-user
+
+## Performance
+
+| Operation | Latency | Notes |
+|-----------|---------|-------|
+| Add 100 docs | ~1-3s | With embedding |
+| Query (top 10) | ~50-200ms | Depends on collection size |
+| Metadata filter | ~10-50ms | Fast with proper indexing |
+
+## Resources
+
+- **GitHub**: https://github.com/chroma-core/chroma ⭐ 24,300+
+- **Docs**: https://docs.trychroma.com
+- **Discord**: https://discord.gg/MMeYNTmh3x
+- **Version**: 1.3.3+
+- **License**: Apache 2.0
+
+

package/skills/ai-research/15-rag/chroma/references/integration.md

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+<!-- vendored from orchestra-research/AI-research-SKILLs@773a52944ba4747a18bd4ae9ade53fff041adcbc 15-rag/chroma/references/integration.md; MIT (c) Orchestra Research -->
+# Chroma Integration Guide
+
+Integration with LangChain, LlamaIndex, and frameworks.
+
+## LangChain
+
+```python
+from langchain_chroma import Chroma
+from langchain_openai import OpenAIEmbeddings
+
+vectorstore = Chroma.from_documents(
+    documents=docs,
+    embedding=OpenAIEmbeddings(),
+    persist_directory="./chroma_db"
+)
+
+# Query
+results = vectorstore.similarity_search("query", k=3)
+
+# As retriever
+retriever = vectorstore.as_retriever()
+```
+
+## LlamaIndex
+
+```python
+from llama_index.vector_stores.chroma import ChromaVectorStore
+import chromadb
+
+db = chromadb.PersistentClient(path="./chroma_db")
+collection = db.get_or_create_collection("docs")
+
+vector_store = ChromaVectorStore(chroma_collection=collection)
+```
+
+## Resources
+
+- **Docs**: https://docs.trychroma.com

package/skills/ai-research/15-rag/faiss/SKILL.md

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+---
+name: faiss
+description: Facebook's library for efficient similarity search and clustering of dense vectors. Supports billions of vectors, GPU acceleration, and various index types (Flat, IVF, HNSW). Use for fast k-NN search, large-scale vector retrieval, or when you need pure similarity search without metadata. Best for high-performance applications.
+version: 1.0.0
+author: Orchestra Research
+license: MIT
+tags: [RAG, FAISS, Similarity Search, Vector Search, Facebook AI, GPU Acceleration, Billion-Scale, K-NN, HNSW, High Performance, Large Scale]
+dependencies: [faiss-cpu, faiss-gpu, numpy]
+---
+
+# FAISS - Efficient Similarity Search
+
+Facebook AI's library for billion-scale vector similarity search.
+
+## When to use FAISS
+
+**Use FAISS when:**
+- Need fast similarity search on large vector datasets (millions/billions)
+- GPU acceleration required
+- Pure vector similarity (no metadata filtering needed)
+- High throughput, low latency critical
+- Offline/batch processing of embeddings
+
+**Metrics**:
+- **31,700+ GitHub stars**
+- Meta/Facebook AI Research
+- **Handles billions of vectors**
+- **C++** with Python bindings
+
+**Use alternatives instead**:
+- **Chroma/Pinecone**: Need metadata filtering
+- **Weaviate**: Need full database features
+- **Annoy**: Simpler, fewer features
+
+## Quick start
+
+### Installation
+
+```bash
+# CPU only
+pip install faiss-cpu
+
+# GPU support
+pip install faiss-gpu
+```
+
+### Basic usage
+
+```python
+import faiss
+import numpy as np
+
+# Create sample data (1000 vectors, 128 dimensions)
+d = 128
+nb = 1000
+vectors = np.random.random((nb, d)).astype('float32')
+
+# Create index
+index = faiss.IndexFlatL2(d)  # L2 distance
+index.add(vectors)             # Add vectors
+
+# Search
+k = 5  # Find 5 nearest neighbors
+query = np.random.random((1, d)).astype('float32')
+distances, indices = index.search(query, k)
+
+print(f"Nearest neighbors: {indices}")
+print(f"Distances: {distances}")
+```
+
+## Index types
+
+### 1. Flat (exact search)
+
+```python
+# L2 (Euclidean) distance
+index = faiss.IndexFlatL2(d)
+
+# Inner product (cosine similarity if normalized)
+index = faiss.IndexFlatIP(d)
+
+# Slowest, most accurate
+```
+
+### 2. IVF (inverted file) - Fast approximate
+
+```python
+# Create quantizer
+quantizer = faiss.IndexFlatL2(d)
+
+# IVF index with 100 clusters
+nlist = 100
+index = faiss.IndexIVFFlat(quantizer, d, nlist)
+
+# Train on data
+index.train(vectors)
+
+# Add vectors
+index.add(vectors)
+
+# Search (nprobe = clusters to search)
+index.nprobe = 10
+distances, indices = index.search(query, k)
+```
+
+### 3. HNSW (Hierarchical NSW) - Best quality/speed
+
+```python
+# HNSW index
+M = 32  # Number of connections per layer
+index = faiss.IndexHNSWFlat(d, M)
+
+# No training needed
+index.add(vectors)
+
+# Search
+distances, indices = index.search(query, k)
+```
+
+### 4. Product Quantization - Memory efficient
+
+```python
+# PQ reduces memory by 16-32×
+m = 8   # Number of subquantizers
+nbits = 8
+index = faiss.IndexPQ(d, m, nbits)
+
+# Train and add
+index.train(vectors)
+index.add(vectors)
+```
+
+## Save and load
+
+```python
+# Save index
+faiss.write_index(index, "large.index")
+
+# Load index
+index = faiss.read_index("large.index")
+
+# Continue using
+distances, indices = index.search(query, k)
+```
+
+## GPU acceleration
+
+```python
+# Single GPU
+res = faiss.StandardGpuResources()
+index_cpu = faiss.IndexFlatL2(d)
+index_gpu = faiss.index_cpu_to_gpu(res, 0, index_cpu)  # GPU 0
+
+# Multi-GPU
+index_gpu = faiss.index_cpu_to_all_gpus(index_cpu)
+
+# 10-100× faster than CPU
+```
+
+## LangChain integration
+
+```python
+from langchain_community.vectorstores import FAISS
+from langchain_openai import OpenAIEmbeddings
+
+# Create FAISS vector store
+vectorstore = FAISS.from_documents(docs, OpenAIEmbeddings())
+
+# Save
+vectorstore.save_local("faiss_index")
+
+# Load
+vectorstore = FAISS.load_local(
+    "faiss_index",
+    OpenAIEmbeddings(),
+    allow_dangerous_deserialization=True
+)
+
+# Search
+results = vectorstore.similarity_search("query", k=5)
+```
+
+## LlamaIndex integration
+
+```python
+from llama_index.vector_stores.faiss import FaissVectorStore
+import faiss
+
+# Create FAISS index
+d = 1536
+faiss_index = faiss.IndexFlatL2(d)
+
+vector_store = FaissVectorStore(faiss_index=faiss_index)
+```
+
+## Best practices
+
+1. **Choose right index type** - Flat for <10K, IVF for 10K-1M, HNSW for quality
+2. **Normalize for cosine** - Use IndexFlatIP with normalized vectors
+3. **Use GPU for large datasets** - 10-100× faster
+4. **Save trained indices** - Training is expensive
+5. **Tune nprobe/ef_search** - Balance speed/accuracy
+6. **Monitor memory** - PQ for large datasets
+7. **Batch queries** - Better GPU utilization
+
+## Performance
+
+| Index Type | Build Time | Search Time | Memory | Accuracy |
+|------------|------------|-------------|--------|----------|
+| Flat | Fast | Slow | High | 100% |
+| IVF | Medium | Fast | Medium | 95-99% |
+| HNSW | Slow | Fastest | High | 99% |
+| PQ | Medium | Fast | Low | 90-95% |
+
+## Resources
+
+- **GitHub**: https://github.com/facebookresearch/faiss ⭐ 31,700+
+- **Wiki**: https://github.com/facebookresearch/faiss/wiki
+- **License**: MIT
+
+