@nfdi4plants/arctrl 3.0.0-beta.2 → 3.0.0-beta.4

package/dist/ts/ts/Spreadsheet/AnnotationTable/CompositeHeader.js

@@ -0,0 +1,410 @@
+import { toFail, printf } from '../../../node_modules/@fable-org/fable-library-js/String.js';
+import { value, map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { OntologyAnnotation } from '../../Core/OntologyAnnotation.js';
+import { dataFromStringCells, freeTextFromStringCells, unitizedFromStringCells, termFromStringCells } from './CompositeCell.js';
+import { IOType, CompositeHeader_Input, IOType_Data, CompositeHeader_Output, CompositeHeader_Date, CompositeHeader_Performer, CompositeHeader_ProtocolVersion, CompositeHeader_ProtocolUri, CompositeHeader_ProtocolDescription, CompositeHeader_ProtocolREF, CompositeHeader_Comment, CompositeHeader_FreeText, CompositeHeader_Parameter, CompositeHeader_Factor, CompositeHeader_Characteristic, CompositeHeader_Component, CompositeHeader_ProtocolType } from '../../Core/Table/CompositeHeader.js';
+import { item, skip, tryFindIndex, equalsWith } from '../../../node_modules/@fable-org/fable-library-js/Array.js';
+import { defaultOf } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
+import { ActivePatterns_$007CInputColumnHeader$007C_$007C, ActivePatterns_$007COutputColumnHeader$007C_$007C, ActivePatterns_$007CComment$007C_$007C, ActivePatterns_$007CTSRColumnHeader$007C_$007C, ActivePatterns_$007CTANColumnHeader$007C_$007C, ActivePatterns_$007CUnitColumnHeader$007C_$007C, tryParseParameterColumnHeader, tryParseFactorColumnHeader, tryParseCharacteristicColumnHeader, tryParseComponentColumnHeader } from '../../Core/Helper/Regex.js';
+import { toString } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
+import { toArray, delay, append, singleton, empty } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+
+function ActivePattern_mergeIDInfo(idSpace1, localID1, idSpace2, localID2) {
+  if (idSpace1 !== idSpace2) {
+    toFail(printf("TermSourceRef %s and %s do not match"))(idSpace1)(idSpace2);
+  }
+  if (localID1 !== localID2) {
+    toFail(printf("LocalID %s and %s do not match"))(localID1)(localID2);
+  }
+  return {
+    TermAccessionNumber: `${idSpace1}:${localID1}`,
+    TermSourceRef: idSpace1
+  };
+}
+function ActivePattern_$007CTerm$007C_$007C(categoryParser, f, cellValues) {
+  const $007CAC$007C_$007C = categoryParser;
+  let matchResult, name, name_1, term1, term2;
+  if (!equalsWith((x, y) => x === y, cellValues, defaultOf()) && cellValues.length === 1) {
+    const activePatternResult = $007CAC$007C_$007C(item(0, cellValues));
+    if (activePatternResult != null) {
+      matchResult = 0;
+      name = value(activePatternResult);
+    } else {
+      matchResult = 2;
+    }
+  } else if (!equalsWith((x_1, y_1) => x_1 === y_1, cellValues, defaultOf()) && cellValues.length === 3) {
+    const activePatternResult_1 = $007CAC$007C_$007C(item(0, cellValues));
+    if (activePatternResult_1 != null) {
+      const activePatternResult_2 = ActivePatterns_$007CTSRColumnHeader$007C_$007C(item(1, cellValues));
+      if (activePatternResult_2 != null) {
+        const activePatternResult_3 = ActivePatterns_$007CTANColumnHeader$007C_$007C(item(2, cellValues));
+        if (activePatternResult_3 != null) {
+          matchResult = 1;
+          name_1 = value(activePatternResult_1);
+          term1 = value(activePatternResult_2);
+          term2 = value(activePatternResult_3);
+        } else {
+          matchResult = 2;
+        }
+      } else {
+        matchResult = 2;
+      }
+    } else {
+      matchResult = 2;
+    }
+  } else {
+    matchResult = 2;
+  }
+  switch (matchResult) {
+    case 0:
+      return [f(OntologyAnnotation.create(name)), (cellValues_1) => termFromStringCells(void 0, void 0, cellValues_1)];
+    case 1: {
+      const term = ActivePattern_mergeIDInfo(term1.IDSpace, term1.LocalID, term2.IDSpace, term2.LocalID);
+      return [f(OntologyAnnotation.create(name_1, term.TermSourceRef, term.TermAccessionNumber)), (cellValues_2) => termFromStringCells(1, 2, cellValues_2)];
+    }
+    default: {
+      let matchResult_1, name_2, term1_1, term2_1;
+      if (!equalsWith((x_2, y_2) => x_2 === y_2, cellValues, defaultOf()) && cellValues.length === 3) {
+        const activePatternResult_4 = $007CAC$007C_$007C(item(0, cellValues));
+        if (activePatternResult_4 != null) {
+          const activePatternResult_5 = ActivePatterns_$007CTANColumnHeader$007C_$007C(item(1, cellValues));
+          if (activePatternResult_5 != null) {
+            const activePatternResult_6 = ActivePatterns_$007CTSRColumnHeader$007C_$007C(item(2, cellValues));
+            if (activePatternResult_6 != null) {
+              matchResult_1 = 0;
+              name_2 = value(activePatternResult_4);
+              term1_1 = value(activePatternResult_6);
+              term2_1 = value(activePatternResult_5);
+            } else {
+              matchResult_1 = 1;
+            }
+          } else {
+            matchResult_1 = 1;
+          }
+        } else {
+          matchResult_1 = 1;
+        }
+      } else {
+        matchResult_1 = 1;
+      }
+      switch (matchResult_1) {
+        case 0: {
+          const term_1 = ActivePattern_mergeIDInfo(term1_1.IDSpace, term1_1.LocalID, term2_1.IDSpace, term2_1.LocalID);
+          return [f(OntologyAnnotation.create(name_2, term_1.TermSourceRef, term_1.TermAccessionNumber)), (cellValues_3) => termFromStringCells(2, 1, cellValues_3)];
+        }
+        default: {
+          let matchResult_2, name_3, term1_2, term2_2;
+          if (!equalsWith((x_3, y_3) => x_3 === y_3, cellValues, defaultOf()) && cellValues.length === 4) {
+            const activePatternResult_7 = $007CAC$007C_$007C(item(0, cellValues));
+            if (activePatternResult_7 != null) {
+              if (ActivePatterns_$007CUnitColumnHeader$007C_$007C(item(1, cellValues)) != null) {
+                const activePatternResult_9 = ActivePatterns_$007CTSRColumnHeader$007C_$007C(item(2, cellValues));
+                if (activePatternResult_9 != null) {
+                  const activePatternResult_10 = ActivePatterns_$007CTANColumnHeader$007C_$007C(item(3, cellValues));
+                  if (activePatternResult_10 != null) {
+                    matchResult_2 = 0;
+                    name_3 = value(activePatternResult_7);
+                    term1_2 = value(activePatternResult_9);
+                    term2_2 = value(activePatternResult_10);
+                  } else {
+                    matchResult_2 = 1;
+                  }
+                } else {
+                  matchResult_2 = 1;
+                }
+              } else {
+                matchResult_2 = 1;
+              }
+            } else {
+              matchResult_2 = 1;
+            }
+          } else {
+            matchResult_2 = 1;
+          }
+          switch (matchResult_2) {
+            case 0: {
+              const term_2 = ActivePattern_mergeIDInfo(term1_2.IDSpace, term1_2.LocalID, term2_2.IDSpace, term2_2.LocalID);
+              return [f(OntologyAnnotation.create(name_3, term_2.TermSourceRef, term_2.TermAccessionNumber)), (cellValues_4) => unitizedFromStringCells(1, 2, 3, cellValues_4)];
+            }
+            default: {
+              let matchResult_3, name_4, term1_3, term2_3;
+              if (!equalsWith((x_4, y_4) => x_4 === y_4, cellValues, defaultOf()) && cellValues.length === 4) {
+                const activePatternResult_11 = $007CAC$007C_$007C(item(0, cellValues));
+                if (activePatternResult_11 != null) {
+                  if (ActivePatterns_$007CUnitColumnHeader$007C_$007C(item(1, cellValues)) != null) {
+                    const activePatternResult_13 = ActivePatterns_$007CTANColumnHeader$007C_$007C(item(2, cellValues));
+                    if (activePatternResult_13 != null) {
+                      const activePatternResult_14 = ActivePatterns_$007CTSRColumnHeader$007C_$007C(item(3, cellValues));
+                      if (activePatternResult_14 != null) {
+                        matchResult_3 = 0;
+                        name_4 = value(activePatternResult_11);
+                        term1_3 = value(activePatternResult_14);
+                        term2_3 = value(activePatternResult_13);
+                      } else {
+                        matchResult_3 = 1;
+                      }
+                    } else {
+                      matchResult_3 = 1;
+                    }
+                  } else {
+                    matchResult_3 = 1;
+                  }
+                } else {
+                  matchResult_3 = 1;
+                }
+              } else {
+                matchResult_3 = 1;
+              }
+              switch (matchResult_3) {
+                case 0: {
+                  const term_3 = ActivePattern_mergeIDInfo(term1_3.IDSpace, term1_3.LocalID, term2_3.IDSpace, term2_3.LocalID);
+                  return [f(OntologyAnnotation.create(name_4, term_3.TermSourceRef, term_3.TermAccessionNumber)), (cellValues_5) => unitizedFromStringCells(1, 3, 2, cellValues_5)];
+                }
+                default:
+                  return void 0;
+              }
+            }
+          }
+        }
+      }
+    }
+  }
+}
+function ActivePattern_$007CParameter$007C_$007C(cellValues) {
+  const activePatternResult = ActivePattern_$007CTerm$007C_$007C(tryParseParameterColumnHeader, CompositeHeader_Parameter, cellValues);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function ActivePattern_$007CFactor$007C_$007C(cellValues) {
+  const activePatternResult = ActivePattern_$007CTerm$007C_$007C(tryParseFactorColumnHeader, CompositeHeader_Factor, cellValues);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function ActivePattern_$007CCharacteristic$007C_$007C(cellValues) {
+  const activePatternResult = ActivePattern_$007CTerm$007C_$007C(tryParseCharacteristicColumnHeader, CompositeHeader_Characteristic, cellValues);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function ActivePattern_$007CComponent$007C_$007C(cellValues) {
+  const activePatternResult = ActivePattern_$007CTerm$007C_$007C(tryParseComponentColumnHeader, CompositeHeader_Component, cellValues);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function ActivePattern_$007CInput$007C_$007C(cellValues) {
+  if (cellValues.length === 0) {
+    return void 0;
+  } else {
+    const matchValue = item(0, cellValues);
+    const activePatternResult = ActivePatterns_$007CInputColumnHeader$007C_$007C(matchValue);
+    if (activePatternResult != null) {
+      const ioType = value(activePatternResult);
+      const cols = skip(1, cellValues);
+      const matchValue_1 = IOType.ofString(ioType);
+      if (matchValue_1.tag === /* Data */
+      2) {
+        const format = map((y) => 1 + y, tryFindIndex((s) => s.startsWith("Data Format"), cols));
+        const selectorFormat = map((y_1) => 1 + y_1, tryFindIndex((s_1) => s_1.startsWith("Data Selector Format"), cols));
+        return [CompositeHeader_Input(IOType_Data()), (cellValues_1) => dataFromStringCells(format, selectorFormat, cellValues_1)];
+      } else {
+        return [CompositeHeader_Input(matchValue_1), freeTextFromStringCells];
+      }
+    } else {
+      return void 0;
+    }
+  }
+}
+function ActivePattern_$007COutput$007C_$007C(cellValues) {
+  if (cellValues.length === 0) {
+    return void 0;
+  } else {
+    const matchValue = item(0, cellValues);
+    const activePatternResult = ActivePatterns_$007COutputColumnHeader$007C_$007C(matchValue);
+    if (activePatternResult != null) {
+      const ioType = value(activePatternResult);
+      const cols = skip(1, cellValues);
+      const matchValue_1 = IOType.ofString(ioType);
+      if (matchValue_1.tag === /* Data */
+      2) {
+        const format = map((y) => 1 + y, tryFindIndex((s) => s.startsWith("Data Format"), cols));
+        const selectorFormat = map((y_1) => 1 + y_1, tryFindIndex((s_1) => s_1.startsWith("Data Selector Format"), cols));
+        return [CompositeHeader_Output(IOType_Data()), (cellValues_1) => dataFromStringCells(format, selectorFormat, cellValues_1)];
+      } else {
+        return [CompositeHeader_Output(matchValue_1), freeTextFromStringCells];
+      }
+    } else {
+      return void 0;
+    }
+  }
+}
+function ActivePattern_$007CComment$007C_$007C(cellValues) {
+  let matchResult, key;
+  if (!equalsWith((x, y) => x === y, cellValues, defaultOf()) && cellValues.length === 1) {
+    const activePatternResult = ActivePatterns_$007CComment$007C_$007C(item(0, cellValues));
+    if (activePatternResult != null) {
+      matchResult = 0;
+      key = value(activePatternResult);
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0:
+      return [CompositeHeader_Comment(key), freeTextFromStringCells];
+    default:
+      return void 0;
+  }
+}
+function ActivePattern_$007CProtocolType$007C_$007C(cellValues) {
+  const activePatternResult = ActivePattern_$007CTerm$007C_$007C((s) => {
+    if (s === "Protocol Type") {
+      return s;
+    } else {
+      return void 0;
+    }
+  }, (_arg) => CompositeHeader_ProtocolType(), cellValues);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function ActivePattern_$007CProtocolHeader$007C_$007C(cellValues) {
+  let matchResult;
+  if (!equalsWith((x, y) => x === y, cellValues, defaultOf()) && cellValues.length === 1) {
+    if (item(0, cellValues) === "Protocol REF") {
+      matchResult = 0;
+    } else if (item(0, cellValues) === "Protocol Description") {
+      matchResult = 1;
+    } else if (item(0, cellValues) === "Protocol Uri") {
+      matchResult = 2;
+    } else if (item(0, cellValues) === "Protocol Version") {
+      matchResult = 3;
+    } else if (item(0, cellValues) === "Performer") {
+      matchResult = 4;
+    } else if (item(0, cellValues) === "Date") {
+      matchResult = 5;
+    } else {
+      matchResult = 6;
+    }
+  } else {
+    matchResult = 6;
+  }
+  switch (matchResult) {
+    case 0:
+      return [CompositeHeader_ProtocolREF(), freeTextFromStringCells];
+    case 1:
+      return [CompositeHeader_ProtocolDescription(), freeTextFromStringCells];
+    case 2:
+      return [CompositeHeader_ProtocolUri(), freeTextFromStringCells];
+    case 3:
+      return [CompositeHeader_ProtocolVersion(), freeTextFromStringCells];
+    case 4:
+      return [CompositeHeader_Performer(), freeTextFromStringCells];
+    case 5:
+      return [CompositeHeader_Date(), freeTextFromStringCells];
+    default:
+      return void 0;
+  }
+}
+function ActivePattern_$007CFreeText$007C_$007C(cellValues) {
+  if (!equalsWith((x, y) => x === y, cellValues, defaultOf()) && cellValues.length === 1) {
+    return [CompositeHeader_FreeText(item(0, cellValues)), freeTextFromStringCells];
+  } else {
+    return void 0;
+  }
+}
+function fromStringCells(cellValues) {
+  const activePatternResult = ActivePattern_$007CParameter$007C_$007C(cellValues);
+  if (activePatternResult != null) {
+    const p = value(activePatternResult);
+    return p;
+  } else {
+    const activePatternResult_1 = ActivePattern_$007CFactor$007C_$007C(cellValues);
+    if (activePatternResult_1 != null) {
+      const f = value(activePatternResult_1);
+      return f;
+    } else {
+      const activePatternResult_2 = ActivePattern_$007CCharacteristic$007C_$007C(cellValues);
+      if (activePatternResult_2 != null) {
+        const c = value(activePatternResult_2);
+        return c;
+      } else {
+        const activePatternResult_3 = ActivePattern_$007CComponent$007C_$007C(cellValues);
+        if (activePatternResult_3 != null) {
+          const c_1 = value(activePatternResult_3);
+          return c_1;
+        } else {
+          const activePatternResult_4 = ActivePattern_$007CInput$007C_$007C(cellValues);
+          if (activePatternResult_4 != null) {
+            const i = value(activePatternResult_4);
+            return i;
+          } else {
+            const activePatternResult_5 = ActivePattern_$007COutput$007C_$007C(cellValues);
+            if (activePatternResult_5 != null) {
+              const o = value(activePatternResult_5);
+              return o;
+            } else {
+              const activePatternResult_6 = ActivePattern_$007CProtocolType$007C_$007C(cellValues);
+              if (activePatternResult_6 != null) {
+                const pt = value(activePatternResult_6);
+                return pt;
+              } else {
+                const activePatternResult_7 = ActivePattern_$007CProtocolHeader$007C_$007C(cellValues);
+                if (activePatternResult_7 != null) {
+                  const ph = value(activePatternResult_7);
+                  return ph;
+                } else {
+                  const activePatternResult_8 = ActivePattern_$007CComment$007C_$007C(cellValues);
+                  if (activePatternResult_8 != null) {
+                    const c_2 = value(activePatternResult_8);
+                    return c_2;
+                  } else {
+                    const activePatternResult_9 = ActivePattern_$007CFreeText$007C_$007C(cellValues);
+                    if (activePatternResult_9 != null) {
+                      const ft = value(activePatternResult_9);
+                      return ft;
+                    } else {
+                      return toFail(printf("Could not parse header group %O"))(cellValues);
+                    }
+                  }
+                }
+              }
+            }
+          }
+        }
+      }
+    }
+  }
+}
+function toStringCells(hasUnit, header) {
+  if (header.IsDataColumn) {
+    return [toString(header), "Data Format", "Data Selector Format"];
+  } else if (header.IsSingleColumn) {
+    return [toString(header)];
+  } else if (header.IsTermColumn) {
+    return toArray(delay(() => append(singleton(toString(header)), delay(() => append(hasUnit ? singleton("Unit") : empty(), delay(() => append(singleton(`Term Source REF (${header.GetColumnAccessionShort})`), delay(() => singleton(`Term Accession Number (${header.GetColumnAccessionShort})`)))))))));
+  } else {
+    return toFail(printf("header %O is neither single nor term column"))(header);
+  }
+}
+
+export { ActivePattern_$007CCharacteristic$007C_$007C, ActivePattern_$007CComment$007C_$007C, ActivePattern_$007CComponent$007C_$007C, ActivePattern_$007CFactor$007C_$007C, ActivePattern_$007CFreeText$007C_$007C, ActivePattern_$007CInput$007C_$007C, ActivePattern_$007COutput$007C_$007C, ActivePattern_$007CParameter$007C_$007C, ActivePattern_$007CProtocolHeader$007C_$007C, ActivePattern_$007CProtocolType$007C_$007C, ActivePattern_$007CTerm$007C_$007C, ActivePattern_mergeIDInfo, fromStringCells, toStringCells };

package/dist/ts/ts/Spreadsheet/ArcAssay.d.ts

@@ -0,0 +1,31 @@
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { ArcAssay } from '../Core/ArcTypes.js';
+import { FsWorksheet } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
+import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
+export declare function ArcAssay_fromRows(rows: Iterable<Iterable<[int32, string]>>): ArcAssay;
+export declare function ArcAssay_toRows(assay: ArcAssay): Iterable<Iterable<[int32, string]>>;
+export declare function ArcAssay_toMetadataSheet(assay: ArcAssay): FsWorksheet;
+export declare function ArcAssay_fromMetadataSheet(sheet: FsWorksheet): ArcAssay;
+export declare function ArcAssay_toMetadataCollection(assay: ArcAssay): Iterable<Iterable<Option<string>>>;
+export declare function ArcAssay_fromMetadataCollection(collection: Iterable<Iterable<Option<string>>>): ArcAssay;
+export declare function ArcAssay_isMetadataSheetName(name: string): boolean;
+export declare function ArcAssay_isMetadataSheet(sheet: FsWorksheet): boolean;
+export declare function ArcAssay_tryGetMetadataSheet(doc: FsWorkbook): Option<FsWorksheet>;
+/**
+ * Reads an assay from a spreadsheet
+ */
+export declare function ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D(doc: FsWorkbook): ArcAssay;
+/**
+ * Write an assay to a spreadsheet
+ *
+ * If datamapSheet is true, the datamap will be written to a worksheet inside assay workbook.
+ */
+export declare function ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(assay: ArcAssay, datamapSheet?: boolean): FsWorkbook;
+/**
+ * Write an assay to a spreadsheet
+ *
+ * If datamapSheet is true, the datamap will be written to a worksheet inside assay workbook.
+ */
+export declare function ARCtrl_ArcAssay__ArcAssay_ToFsWorkbook_6FCE9E49(this$: ArcAssay, datamapSheet: Option<boolean>): FsWorkbook;
+//# sourceMappingURL=ArcAssay.d.ts.map

package/dist/ts/ts/Spreadsheet/ArcAssay.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/ts/Spreadsheet/ArcAssay.js

@@ -0,0 +1,169 @@
+import { iterate, iterateIndexed, choose, tryPick, isEmpty, tryFind, map, exists, head, tryHead, delay, append, singleton as singleton$1 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { defaultArg, toArray, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { getEnumerator } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { fromRows as fromRows$1, toRows } from './Metadata/Assays.js';
+import { empty, isEmpty as isEmpty$1, singleton, ofSeq } from '../../node_modules/@fable-org/fable-library-js/List.js';
+import { ArcAssay } from '../Core/ArcTypes.js';
+import { fromRows, toRows as toRows$1 } from './Metadata/Contacts.js';
+import { createMissingIdentifier } from '../Core/Helper/Identifier.js';
+import { SparseRowModule_fromFsRow, SparseRowModule_tryGetValueAt, SparseRowModule_writeToSheet, SparseRowModule_fromValues } from './Metadata/SparseTable.js';
+import { FsWorksheet } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
+import { toConsole, printf, toFail } from '../../node_modules/@fable-org/fable-library-js/String.js';
+import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
+import { toFsWorksheet as toFsWorksheet$1, tryFromFsWorksheet } from './AnnotationTable/ArcTable.js';
+import { toFsWorksheet, tryFromFsWorksheet as tryFromFsWorksheet$1 } from './DataMapTable/DataMapTable.js';
+
+function ArcAssay_fromRows(rows) {
+  const patternInput = exists((row) => {
+    const s = head(row)[1];
+    return s.startsWith("Assay");
+  }, rows) ? ["Assay", "Assay Person"] : [void 0, void 0];
+  const en = getEnumerator(rows);
+  const loop = (lastRow_mut, assays_mut, contacts_mut, rowNumber_mut) => {
+    let prefix;
+    loop:
+      while (true) {
+        const lastRow = lastRow_mut, assays = assays_mut, contacts = contacts_mut, rowNumber = rowNumber_mut;
+        let matchResult;
+        if (lastRow != null) {
+          if (prefix = value(lastRow), prefix === "ASSAY" ? true : prefix === "ASSAY METADATA") {
+            matchResult = 0;
+            value(lastRow);
+          } else if (value(lastRow) === "ASSAY PERFORMERS") {
+            matchResult = 1;
+            value(lastRow);
+          } else {
+            matchResult = 2;
+          }
+        } else {
+          matchResult = 2;
+        }
+        switch (matchResult) {
+          case 0: {
+            const patternInput_1 = fromRows$1(patternInput[0], rowNumber + 1, en);
+            lastRow_mut = patternInput_1[0];
+            assays_mut = patternInput_1[3];
+            contacts_mut = contacts;
+            rowNumber_mut = patternInput_1[1];
+            continue loop;
+          }
+          case 1: {
+            const patternInput_2 = fromRows(patternInput[1], rowNumber + 1, en);
+            lastRow_mut = patternInput_2[0];
+            assays_mut = assays;
+            contacts_mut = patternInput_2[3];
+            rowNumber_mut = patternInput_2[1];
+            continue loop;
+          }
+          default: {
+            let matchResult_1, assays_2, contacts_2;
+            if (isEmpty$1(assays)) {
+              if (isEmpty$1(contacts)) {
+                matchResult_1 = 0;
+              } else {
+                matchResult_1 = 1;
+                assays_2 = assays;
+                contacts_2 = contacts;
+              }
+            } else {
+              matchResult_1 = 1;
+              assays_2 = assays;
+              contacts_2 = contacts;
+            }
+            switch (matchResult_1) {
+              case 0:
+                return ArcAssay.create(createMissingIdentifier());
+              default: {
+                const performers = Array.from(contacts_2);
+                const assay = defaultArg(tryHead(assays_2), ArcAssay.create(createMissingIdentifier()));
+                return ArcAssay.setPerformers(performers, assay);
+              }
+            }
+          }
+        }
+      }
+  };
+  if (en["System.Collections.IEnumerator.MoveNext"]()) {
+    return loop(SparseRowModule_tryGetValueAt(0, en["System.Collections.Generic.IEnumerator`1.get_Current"]()), empty(), empty(), 1);
+  } else {
+    throw new Error("empty assay metadata sheet");
+  }
+}
+function ArcAssay_toRows(assay) {
+  return delay(() => append(singleton$1(SparseRowModule_fromValues(["ASSAY"])), delay(() => append(toRows("Assay", singleton(assay)), delay(() => append(singleton$1(SparseRowModule_fromValues(["ASSAY PERFORMERS"])), delay(() => toRows$1("Assay Person", ofSeq(assay.Performers)))))))));
+}
+function ArcAssay_toMetadataSheet(assay) {
+  const sheet = new FsWorksheet("isa_assay");
+  iterateIndexed((rowI, r) => {
+    SparseRowModule_writeToSheet(rowI + 1, r, sheet);
+  }, ArcAssay_toRows(assay));
+  return sheet;
+}
+function ArcAssay_fromMetadataSheet(sheet) {
+  try {
+    const rows = map(SparseRowModule_fromFsRow, sheet.Rows);
+    const hasPrefix = exists((row) => {
+      const s = head(row)[1];
+      return s.startsWith("Assay");
+    }, rows);
+    return ArcAssay_fromRows(rows);
+  } catch (err) {
+    const arg = err.message;
+    return toFail(printf("Failed while parsing metadatasheet: %s"))(arg);
+  }
+}
+function ArcAssay_isMetadataSheetName(name) {
+  if (name === "isa_assay") {
+    return true;
+  } else {
+    return name === "Assay";
+  }
+}
+function ArcAssay_isMetadataSheet(sheet) {
+  return ArcAssay_isMetadataSheetName(sheet.Name);
+}
+function ArcAssay_tryGetMetadataSheet(doc) {
+  return tryFind(ArcAssay_isMetadataSheet, doc.GetWorksheets());
+}
+function ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D(doc) {
+  try {
+    let assayMetadata;
+    const matchValue = ArcAssay_tryGetMetadataSheet(doc);
+    if (matchValue == null) {
+      toConsole(printf('Cannot retrieve metadata: Assay file does not contain "%s" or "%s" sheet.'))("isa_assay")("Assay");
+      assayMetadata = ArcAssay.create(createMissingIdentifier());
+    } else {
+      assayMetadata = ArcAssay_fromMetadataSheet(value(matchValue));
+    }
+    const sheets = doc.GetWorksheets();
+    const annotationTables = choose(tryFromFsWorksheet, sheets);
+    const datamapSheet = tryPick(tryFromFsWorksheet$1, sheets);
+    if (!isEmpty(annotationTables)) {
+      assayMetadata.Tables = Array.from(annotationTables);
+    }
+    assayMetadata.DataMap = datamapSheet;
+    return assayMetadata;
+  } catch (err) {
+    const arg_2 = err.message;
+    return toFail(printf("Could not parse assay: \n%s"))(arg_2);
+  }
+}
+function ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(assay, datamapSheet) {
+  const datamapSheet_1 = defaultArg(datamapSheet, true);
+  const doc = new FsWorkbook();
+  const metadataSheet = ArcAssay_toMetadataSheet(assay);
+  doc.AddWorksheet(metadataSheet);
+  if (datamapSheet_1) {
+    iterate((arg) => {
+      const sheet = toFsWorksheet(arg);
+      doc.AddWorksheet(sheet);
+    }, toArray(assay.DataMap));
+  }
+  iterateIndexed((i, arg_1) => {
+    const sheet_1 = toFsWorksheet$1(i, arg_1);
+    doc.AddWorksheet(sheet_1);
+  }, assay.Tables);
+  return doc;
+}
+
+export { ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F, ArcAssay_fromMetadataSheet, ArcAssay_fromRows, ArcAssay_isMetadataSheet, ArcAssay_isMetadataSheetName, ArcAssay_toMetadataSheet, ArcAssay_toRows, ArcAssay_tryGetMetadataSheet };

package/dist/ts/ts/Spreadsheet/ArcInvestigation.d.ts

@@ -0,0 +1,42 @@
+import { Record } from '@fable-org/fable-library-js/Types.js';
+import { FSharpList } from '@fable-org/fable-library-js/List.js';
+import { Remark, Comment$ } from '../Core/Comment.js';
+import { IEnumerator, IEquatable } from '@fable-org/fable-library-js/Util.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+import { SparseTable } from './Metadata/SparseTable.js';
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { ArcAssay, ArcStudy, ArcInvestigation } from '../Core/ArcTypes.js';
+import { OntologySourceReference } from '../Core/OntologySourceReference.js';
+import { Publication } from '../Core/Publication.js';
+import { Person } from '../Core/Person.js';
+import { FsWorksheet } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorksheet.fs.js';
+import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
+export declare class ArcInvestigation_InvestigationInfo extends Record implements IEquatable<ArcInvestigation_InvestigationInfo> {
+    readonly Identifier: string;
+    readonly Title: string;
+    readonly Description: string;
+    readonly SubmissionDate: string;
+    readonly PublicReleaseDate: string;
+    readonly Comments: FSharpList<Comment$>;
+    constructor(Identifier: string, Title: string, Description: string, SubmissionDate: string, PublicReleaseDate: string, Comments: FSharpList<Comment$>);
+}
+export declare function ArcInvestigation_InvestigationInfo_$reflection(): TypeInfo;
+export declare function ArcInvestigation_InvestigationInfo_create(identifier: string, title: string, description: string, submissionDate: string, publicReleaseDate: string, comments: FSharpList<Comment$>): ArcInvestigation_InvestigationInfo;
+export declare function ArcInvestigation_InvestigationInfo_get_Labels(): FSharpList<string>;
+export declare function ArcInvestigation_InvestigationInfo_FromSparseTable_3ECCA699(matrix: SparseTable): ArcInvestigation_InvestigationInfo;
+export declare function ArcInvestigation_InvestigationInfo_ToSparseTable_Z720BD3FF(investigation: ArcInvestigation): SparseTable;
+export declare function ArcInvestigation_InvestigationInfo_fromRows(lineNumber: int32, rows: IEnumerator<Iterable<[int32, string]>>): [Option<string>, int32, FSharpList<Remark>, ArcInvestigation_InvestigationInfo];
+export declare function ArcInvestigation_InvestigationInfo_toRows_Z720BD3FF(investigation: ArcInvestigation): Iterable<Iterable<[int32, string]>>;
+export declare function ArcInvestigation_fromParts(investigationInfo: ArcInvestigation_InvestigationInfo, ontologySourceReference: FSharpList<OntologySourceReference>, publications: FSharpList<Publication>, contacts: FSharpList<Person>, studies: FSharpList<ArcStudy>, assays: FSharpList<ArcAssay>, remarks: FSharpList<Remark>): ArcInvestigation;
+export declare function ArcInvestigation_fromRows(rows: Iterable<Iterable<[int32, string]>>): ArcInvestigation;
+export declare function ArcInvestigation_toRows(investigation: ArcInvestigation): Iterable<Iterable<[int32, string]>>;
+export declare function ArcInvestigation_toMetadataCollection(investigation: ArcInvestigation): Iterable<Iterable<Option<string>>>;
+export declare function ArcInvestigation_fromMetadataCollection(collection: Iterable<Iterable<Option<string>>>): ArcInvestigation;
+export declare function ArcInvestigation_isMetadataSheetName(name: string): boolean;
+export declare function ArcInvestigation_isMetadataSheet(sheet: FsWorksheet): boolean;
+export declare function ArcInvestigation_tryGetMetadataSheet(doc: FsWorkbook): Option<FsWorksheet>;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D(doc: FsWorkbook): ArcInvestigation;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF(investigation: ArcInvestigation): FsWorkbook;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToFsWorkbook(this$: ArcInvestigation): FsWorkbook;
+//# sourceMappingURL=ArcInvestigation.d.ts.map

package/dist/ts/ts/Spreadsheet/ArcInvestigation.d.ts.map

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