@nfdi4plants/arctrl 3.0.0-beta.2 → 3.0.0-beta.4

package/dist/ts/ts/ARC.d.ts

@@ -0,0 +1,80 @@
+import { FileSystem } from './FileSystem/FileSystem.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { ArcRun, ArcWorkflow, ArcStudy, ArcAssay, ArcInvestigation } from './Core/ArcTypes.js';
+import { FSharpResult$2_$union } from '@fable-org/fable-library-js/Result.js';
+import { Contract } from './Contract/Contract.js';
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { DataMap } from './Core/DataMap.js';
+import { FileSystemTree_$union } from './FileSystem/FileSystemTree.js';
+import { FSharpList } from '@fable-org/fable-library-js/List.js';
+import { Remark, Comment$ } from './Core/Comment.js';
+import { Person } from './Core/Person.js';
+import { Publication } from './Core/Publication.js';
+import { OntologySourceReference } from './Core/OntologySourceReference.js';
+import { FSharpMap } from '@fable-org/fable-library-js/Map.js';
+import { ValidationPackagesConfig } from './ValidationPackages/ValidationPackagesConfig.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+export declare class ARC extends ArcInvestigation {
+    _cwl: Option<void>;
+    _fs: FileSystem;
+    "init@90": int32;
+    constructor(identifier: string, title?: string, description?: string, submissionDate?: string, publicReleaseDate?: string, ontologySourceReferences?: OntologySourceReference[], publications?: Publication[], contacts?: Person[], assays?: ArcAssay[], studies?: ArcStudy[], workflows?: ArcWorkflow[], runs?: ArcRun[], registeredStudyIdentifiers?: string[], comments?: Comment$[], remarks?: Remark[], cwl?: Option<void>, fs?: FileSystem);
+    get FileSystem(): FileSystem;
+    set FileSystem(fs: FileSystem);
+    static fromArcInvestigation(isa: ArcInvestigation, cwl?: Option<void>, fs?: FileSystem): ARC;
+    TryWriteAsync(arcPath: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+    TryUpdateAsync(arcPath: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+    static tryLoadAsync(arcPath: string): Promise<FSharpResult$2_$union<ARC, string[]>>;
+    GetAssayRemoveContracts(assayIdentifier: string): Contract[];
+    TryRemoveAssayAsync(arcPath: string, assayIdentifier: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+    GetAssayRenameContracts(oldAssayIdentifier: string, newAssayIdentifier: string): Contract[];
+    TryRenameAssayAsync(arcPath: string, oldAssayIdentifier: string, newAssayIdentifier: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+    GetStudyRemoveContracts(studyIdentifier: string): Contract[];
+    TryRemoveStudyAsync(arcPath: string, studyIdentifier: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+    GetStudyRenameContracts(oldStudyIdentifier: string, newStudyIdentifier: string): Contract[];
+    TryRenameStudyAsync(arcPath: string, oldStudyIdentifier: string, newStudyIdentifier: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+    WriteAsync(arcPath: string): Promise<void>;
+    UpdateAsync(arcPath: string): Promise<void>;
+    RemoveAssayAsync(arcPath: string, assayIdentifier: string): Promise<void>;
+    RenameAssayAsync(arcPath: string, oldAssayIdentifier: string, newAssayIdentifier: string): Promise<void>;
+    RemoveStudyAsync(arcPath: string, studyIdentifier: string): Promise<void>;
+    RenameStudyAsync(arcPath: string, oldStudyIdentifier: string, newStudyIdentifier: string): Promise<void>;
+    static loadAsync(arcPath: string): Promise<ARC>;
+    MakeDataFilesAbsolute(): void;
+    static fromFilePaths(filePaths: string[]): ARC;
+    SetFilePaths(filePaths: string[]): void;
+    GetReadContracts(): Contract[];
+    SetISAFromContracts(contracts: Contract[]): void;
+    UpdateFileSystem(): void;
+    GetWriteContracts(skipUpdateFS?: boolean): Contract[];
+    GetUpdateContracts(skipUpdateFS?: boolean): Contract[];
+    GetGitInitContracts(branch?: string, repositoryAddress?: string, defaultGitignore?: boolean, defaultGitattributes?: boolean): Contract[];
+    static getCloneContract(remoteUrl: string, merge?: boolean, branch?: string, token?: [string, string], nolfs?: boolean): Contract;
+    Copy(): ARC;
+    GetRegisteredPayload(IgnoreHidden?: boolean): FileSystemTree_$union;
+    GetAdditionalPayload(IgnoreHidden?: boolean): FileSystemTree_$union;
+    static get DefaultContracts(): FSharpMap<string, Contract>;
+    static fromDeprecatedROCrateJsonString(s: string): ARC;
+    static fromROCrateJsonString(s: string): ARC;
+    ToROCrateJsonString(spaces?: int32): string;
+    static toROCrateJsonString(spaces?: int32): ((arg0: ARC) => string);
+    GetValidationPackagesConfigWriteContract(vpc: ValidationPackagesConfig): Contract;
+    GetValidationPackagesConfigDeleteContract(vpc: ValidationPackagesConfig): Contract;
+    GetValidationPackagesConfigReadContract(): Contract;
+    GetValidationPackagesConfigFromReadContract(contract: Contract): Option<ValidationPackagesConfig>;
+    ToFilePaths(removeRoot?: boolean, skipUpdateFS?: boolean): string[];
+}
+export declare function ARC_$reflection(): TypeInfo;
+export declare function ARC_$ctor_5BB4A6F7(identifier: string, title?: string, description?: string, submissionDate?: string, publicReleaseDate?: string, ontologySourceReferences?: OntologySourceReference[], publications?: Publication[], contacts?: Person[], assays?: ArcAssay[], studies?: ArcStudy[], workflows?: ArcWorkflow[], runs?: ArcRun[], registeredStudyIdentifiers?: string[], comments?: Comment$[], remarks?: Remark[], cwl?: Option<void>, fs?: FileSystem): ARC;
+export declare function ARCAux_getArcAssaysFromContracts(contracts: Contract[]): ArcAssay[];
+export declare function ARCAux_getArcStudiesFromContracts(contracts: Contract[]): [ArcStudy, FSharpList<ArcAssay>][];
+export declare function ARCAux_getArcWorkflowsFromContracts(contracts: Contract[]): ArcWorkflow[];
+export declare function ARCAux_getArcRunsFromContracts(contracts: Contract[]): ArcRun[];
+export declare function ARCAux_getAssayDataMapFromContracts(assayIdentifier: string, contracts: Contract[]): Option<DataMap>;
+export declare function ARCAux_getStudyDataMapFromContracts(studyIdentifier: string, contracts: Contract[]): Option<DataMap>;
+export declare function ARCAux_getWorkflowDataMapFromContracts(workflowIdentifier: string, contracts: Contract[]): Option<DataMap>;
+export declare function ARCAux_getRunDataMapFromContracts(runIdentifier: string, contracts: Contract[]): Option<DataMap>;
+export declare function ARCAux_getArcInvestigationFromContracts(contracts: Contract[]): ArcInvestigation;
+export declare function ARCAux_updateFSByISA(isa: ArcInvestigation, fs: FileSystem): FileSystem;
+export declare function ARCAux_updateFSByCWL(cwl: Option<void>, fs: FileSystem): FileSystem;
+//# sourceMappingURL=ARC.d.ts.map

package/dist/ts/ts/ARC.d.ts.map

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