@nfdi4plants/arctrl 3.0.0-beta.2 → 3.0.0-beta.4

package/dist/ts/ts/Contract/ARC.d.ts

@@ -0,0 +1,7 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Contract } from './Contract.js';
+/**
+ * Tries to create READ contract with DTOType = ISA_Assay, ISA_Study or ISA_Investigation from given path relative to ARC root.
+ */
+export declare function tryISAReadContractFromPath(path: string): Option<Contract>;
+//# sourceMappingURL=ARC.d.ts.map

package/dist/ts/ts/Contract/ARC.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ARC.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ARC.ts"],"names":[],"mappings":"AAEA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAOzC;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,QAAQ,CAAC,CA6CzE"}

package/dist/ts/ts/Contract/ARC.js

@@ -0,0 +1,52 @@
+import { split } from '../FileSystem/Path.js';
+import { $007CInvestigationPath$007C_$007C } from './ArcInvestigation.js';
+import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { Contract } from './Contract.js';
+import { $007CAssayPath$007C_$007C } from './ArcAssay.js';
+import { $007CStudyPath$007C_$007C } from './ArcStudy.js';
+import { $007CWorkflowPath$007C_$007C } from './ArcWorkflow.js';
+import { $007CRunPath$007C_$007C } from './ArcRun.js';
+import { $007CDatamapPath$007C_$007C } from './Datamap.js';
+
+function tryISAReadContractFromPath(path) {
+  const split$1 = split(path);
+  const activePatternResult = $007CInvestigationPath$007C_$007C(split$1);
+  if (activePatternResult != null) {
+    const p = value(activePatternResult);
+    return Contract.createRead(p, "ISA_Investigation");
+  } else {
+    const activePatternResult_1 = $007CAssayPath$007C_$007C(split$1);
+    if (activePatternResult_1 != null) {
+      const p_1 = value(activePatternResult_1);
+      return Contract.createRead(p_1, "ISA_Assay");
+    } else {
+      const activePatternResult_2 = $007CStudyPath$007C_$007C(split$1);
+      if (activePatternResult_2 != null) {
+        const p_2 = value(activePatternResult_2);
+        return Contract.createRead(p_2, "ISA_Study");
+      } else {
+        const activePatternResult_3 = $007CWorkflowPath$007C_$007C(split$1);
+        if (activePatternResult_3 != null) {
+          const p_3 = value(activePatternResult_3);
+          return Contract.createRead(p_3, "ISA_Workflow");
+        } else {
+          const activePatternResult_4 = $007CRunPath$007C_$007C(split$1);
+          if (activePatternResult_4 != null) {
+            const p_4 = value(activePatternResult_4);
+            return Contract.createRead(p_4, "ISA_Run");
+          } else {
+            const activePatternResult_5 = $007CDatamapPath$007C_$007C(split$1);
+            if (activePatternResult_5 != null) {
+              const p_5 = value(activePatternResult_5);
+              return Contract.createRead(p_5, "ISA_Datamap");
+            } else {
+              return void 0;
+            }
+          }
+        }
+      }
+    }
+  }
+}
+
+export { tryISAReadContractFromPath };

package/dist/ts/ts/Contract/ArcAssay.d.ts

@@ -0,0 +1,12 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Contract } from './Contract.js';
+import { ArcAssay } from '../Core/ArcTypes.js';
+export declare function $007CAssayPath$007C_$007C(input: string[]): Option<string>;
+export declare function ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(this$: ArcAssay, WithFolder: Option<boolean>): Contract[];
+export declare function ARCtrl_ArcAssay__ArcAssay_ToUpdateContract(this$: ArcAssay): Contract;
+export declare function ARCtrl_ArcAssay__ArcAssay_ToDeleteContract(this$: ArcAssay): Contract;
+export declare function ARCtrl_ArcAssay__ArcAssay_toDeleteContract_Static_1501C0F8(assay: ArcAssay): Contract;
+export declare function ARCtrl_ArcAssay__ArcAssay_toCreateContract_Static_Z2508BE4F(assay: ArcAssay, WithFolder?: boolean): Contract[];
+export declare function ARCtrl_ArcAssay__ArcAssay_toUpdateContract_Static_1501C0F8(assay: ArcAssay): Contract;
+export declare function ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcAssay>;
+//# sourceMappingURL=ArcAssay.d.ts.map

package/dist/ts/ts/Contract/ArcAssay.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ArcAssay.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcAssay.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAG/C,wBAAgB,yBAAyB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BzE;AAED,wBAAgB,mDAAmD,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQ5H;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,2DAA2D,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAE7H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,6DAA6D,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,QAAQ,CAAC,CA8B3G"}

package/dist/ts/ts/Contract/ArcAssay.js

@@ -0,0 +1,80 @@
+import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
+import { combineMany, getAssayFolderPath } from '../FileSystem/Path.js';
+import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { value, defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { Assay_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
+import { Contract } from './Contract.js';
+import { ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F } from '../Spreadsheet/ArcAssay.js';
+import { toArray, delay, append, singleton, collect, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
+
+function $007CAssayPath$007C_$007C(input) {
+  let matchResult;
+  if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
+    if (item(0, input) === "assays") {
+      if (item(2, input) === "isa.assay.xlsx") {
+        matchResult = 0;
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0: {
+      item(1, input);
+      return combineMany(input);
+    }
+    default:
+      return void 0;
+  }
+}
+function ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(this$, WithFolder) {
+  const withFolder = defaultArg(WithFolder, false);
+  const path = Assay_fileNameFromIdentifier(this$.Identifier);
+  const c = Contract.createCreate(path, "ISA_Assay", ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(this$));
+  return toArray(delay(() => {
+    let folderFS;
+    return append(withFolder ? (folderFS = FileSystemTree.createAssaysFolder([FileSystemTree.createAssayFolder(this$.Identifier)]), collect((p) => p !== path && p !== "assays/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
+  }));
+}
+function ARCtrl_ArcAssay__ArcAssay_ToUpdateContract(this$) {
+  const path = Assay_fileNameFromIdentifier(this$.Identifier);
+  return Contract.createUpdate(path, "ISA_Assay", ARCtrl_ArcAssay__ArcAssay_toFsWorkbook_Static_Z2508BE4F(this$));
+}
+function ARCtrl_ArcAssay__ArcAssay_ToDeleteContract(this$) {
+  const path = getAssayFolderPath(this$.Identifier);
+  return Contract.createDelete(path);
+}
+function ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F(c) {
+  let matchResult, fsworkbook;
+  if (c.Operation === "READ") {
+    if (c.DTOType != null) {
+      if (value(c.DTOType) === "ISA_Assay") {
+        if (c.DTO != null) {
+          matchResult = 0;
+          fsworkbook = value(c.DTO);
+        } else {
+          matchResult = 1;
+        }
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0:
+      return ARCtrl_ArcAssay__ArcAssay_fromFsWorkbook_Static_32154C9D(fsworkbook);
+    default:
+      return void 0;
+  }
+}
+
+export { $007CAssayPath$007C_$007C, ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49, ARCtrl_ArcAssay__ArcAssay_ToDeleteContract, ARCtrl_ArcAssay__ArcAssay_ToUpdateContract, ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F };

package/dist/ts/ts/Contract/ArcInvestigation.d.ts

@@ -0,0 +1,10 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Contract } from './Contract.js';
+import { ArcInvestigation } from '../Core/ArcTypes.js';
+export declare function $007CInvestigationPath$007C_$007C(input: string[]): Option<string>;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToCreateContract(this$: ArcInvestigation): Contract;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(this$: ArcInvestigation): Contract;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_toCreateContract_Static_Z720BD3FF(inv: ArcInvestigation): Contract;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_toUpdateContract_Static_Z720BD3FF(inv: ArcInvestigation): Contract;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcInvestigation>;
+//# sourceMappingURL=ArcInvestigation.d.ts.map

package/dist/ts/ts/Contract/ArcInvestigation.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ArcInvestigation.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcInvestigation.ts"],"names":[],"mappings":"AAIA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAEzC,OAAO,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAGvD,wBAAgB,iCAAiC,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CAmBjF;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,gBAAgB,GAAG,QAAQ,CAE5G;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,gBAAgB,GAAG,QAAQ,CAE5G;AAED,wBAAgB,2EAA2E,CAAC,GAAG,EAAE,gBAAgB,GAAG,QAAQ,CAE3H;AAED,wBAAgB,2EAA2E,CAAC,GAAG,EAAE,gBAAgB,GAAG,QAAQ,CAE3H;AAED,wBAAgB,6EAA6E,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,gBAAgB,CAAC,CA8BnI"}

package/dist/ts/ts/Contract/ArcInvestigation.js

@@ -0,0 +1,57 @@
+import { combineMany } from '../FileSystem/Path.js';
+import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
+import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { Contract } from './Contract.js';
+import { ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF, ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D } from '../Spreadsheet/ArcInvestigation.js';
+
+function $007CInvestigationPath$007C_$007C(input) {
+  let matchResult;
+  if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 1) {
+    if (item(0, input) === "isa.investigation.xlsx") {
+      matchResult = 0;
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0:
+      return combineMany(input);
+    default:
+      return void 0;
+  }
+}
+function ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(this$) {
+  return Contract.createUpdate("isa.investigation.xlsx", "ISA_Investigation", ARCtrl_ArcInvestigation__ArcInvestigation_toFsWorkbook_Static_Z720BD3FF(this$));
+}
+function ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F(c) {
+  let matchResult, fsworkbook;
+  if (c.Operation === "READ") {
+    if (c.DTOType != null) {
+      if (value(c.DTOType) === "ISA_Investigation") {
+        if (c.DTO != null) {
+          matchResult = 0;
+          fsworkbook = value(c.DTO);
+        } else {
+          matchResult = 1;
+        }
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0:
+      return ARCtrl_ArcInvestigation__ArcInvestigation_fromFsWorkbook_Static_32154C9D(fsworkbook);
+    default:
+      return void 0;
+  }
+}
+
+export { $007CInvestigationPath$007C_$007C, ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract, ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F };

package/dist/ts/ts/Contract/ArcRun.d.ts

@@ -0,0 +1,12 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Contract } from './Contract.js';
+import { ArcRun } from '../Core/ArcTypes.js';
+export declare function $007CRunPath$007C_$007C(input: string[]): Option<string>;
+export declare function ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(this$: ArcRun, WithFolder: Option<boolean>): Contract[];
+export declare function ARCtrl_ArcRun__ArcRun_ToUpdateContract(this$: ArcRun): Contract;
+export declare function ARCtrl_ArcRun__ArcRun_ToDeleteContract(this$: ArcRun): Contract;
+export declare function ARCtrl_ArcRun__ArcRun_toDeleteContract_Static_Z3EFAF6F8(run: ArcRun): Contract;
+export declare function ARCtrl_ArcRun__ArcRun_toCreateContract_Static_Z71974BBF(run: ArcRun, WithFolder?: boolean): Contract[];
+export declare function ARCtrl_ArcRun__ArcRun_toUpdateContract_Static_Z3EFAF6F8(run: ArcRun): Contract;
+export declare function ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcRun>;
+//# sourceMappingURL=ArcRun.d.ts.map

package/dist/ts/ts/Contract/ArcRun.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ArcRun.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcRun.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAG7C,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BvE;AAED,wBAAgB,+CAA+C,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQtH;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAErH;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,yDAAyD,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,CA8BrG"}

package/dist/ts/ts/Contract/ArcRun.js

@@ -0,0 +1,76 @@
+import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
+import { combineMany } from '../FileSystem/Path.js';
+import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { value, defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { Run_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
+import { Contract } from './Contract.js';
+import { ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8 } from '../Spreadsheet/ArcRun.js';
+import { toArray, delay, append, singleton, collect, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
+
+function $007CRunPath$007C_$007C(input) {
+  let matchResult;
+  if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
+    if (item(0, input) === "runs") {
+      if (item(2, input) === "isa.run.xlsx") {
+        matchResult = 0;
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0: {
+      item(1, input);
+      return combineMany(input);
+    }
+    default:
+      return void 0;
+  }
+}
+function ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(this$, WithFolder) {
+  const withFolder = defaultArg(WithFolder, false);
+  const path = Run_fileNameFromIdentifier(this$.Identifier);
+  const c = Contract.createCreate(path, "ISA_Run", ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(this$));
+  return toArray(delay(() => {
+    let folderFS;
+    return append(withFolder ? (folderFS = FileSystemTree.createRunsFolder([FileSystemTree.createRunFolder(this$.Identifier)]), collect((p) => p !== path && p !== "runs/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
+  }));
+}
+function ARCtrl_ArcRun__ArcRun_ToUpdateContract(this$) {
+  const path = Run_fileNameFromIdentifier(this$.Identifier);
+  return Contract.createUpdate(path, "ISA_Run", ARCtrl_ArcRun__ArcRun_toFsWorkbook_Static_Z3EFAF6F8(this$));
+}
+function ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F(c) {
+  let matchResult, fsworkbook;
+  if (c.Operation === "READ") {
+    if (c.DTOType != null) {
+      if (value(c.DTOType) === "ISA_Run") {
+        if (c.DTO != null) {
+          matchResult = 0;
+          fsworkbook = value(c.DTO);
+        } else {
+          matchResult = 1;
+        }
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0:
+      return ARCtrl_ArcRun__ArcRun_fromFsWorkbook_Static_32154C9D(fsworkbook);
+    default:
+      return void 0;
+  }
+}
+
+export { $007CRunPath$007C_$007C, ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49, ARCtrl_ArcRun__ArcRun_ToUpdateContract, ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F };

package/dist/ts/ts/Contract/ArcStudy.d.ts

@@ -0,0 +1,13 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Contract } from './Contract.js';
+import { ArcAssay, ArcStudy } from '../Core/ArcTypes.js';
+import { FSharpList } from '@fable-org/fable-library-js/List.js';
+export declare function $007CStudyPath$007C_$007C(input: string[]): Option<string>;
+export declare function ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(this$: ArcStudy, WithFolder: Option<boolean>): Contract[];
+export declare function ARCtrl_ArcStudy__ArcStudy_ToUpdateContract(this$: ArcStudy): Contract;
+export declare function ARCtrl_ArcStudy__ArcStudy_ToDeleteContract(this$: ArcStudy): Contract;
+export declare function ARCtrl_ArcStudy__ArcStudy_toDeleteContract_Static_1680536E(study: ArcStudy): Contract;
+export declare function ARCtrl_ArcStudy__ArcStudy_toCreateContract_Static_Z76BBA099(study: ArcStudy, WithFolder?: boolean): Contract[];
+export declare function ARCtrl_ArcStudy__ArcStudy_toUpdateContract_Static_1680536E(study: ArcStudy): Contract;
+export declare function ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F(c: Contract): Option<[ArcStudy, FSharpList<ArcAssay>]>;
+//# sourceMappingURL=ArcStudy.d.ts.map

package/dist/ts/ts/Contract/ArcStudy.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ArcStudy.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcStudy.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAEzD,OAAO,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAEjE,wBAAgB,yBAAyB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BzE;AAED,wBAAgB,mDAAmD,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQ5H;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,2DAA2D,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAE7H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,6DAA6D,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,CAAC,QAAQ,EAAE,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC,CA8BnI"}

package/dist/ts/ts/Contract/ArcStudy.js

@@ -0,0 +1,76 @@
+import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
+import { combineMany } from '../FileSystem/Path.js';
+import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { value, defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { Study_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
+import { Contract } from './Contract.js';
+import { ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522 } from '../Spreadsheet/ArcStudy.js';
+import { toArray, delay, append, singleton, collect, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
+
+function $007CStudyPath$007C_$007C(input) {
+  let matchResult;
+  if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
+    if (item(0, input) === "studies") {
+      if (item(2, input) === "isa.study.xlsx") {
+        matchResult = 0;
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0: {
+      item(1, input);
+      return combineMany(input);
+    }
+    default:
+      return void 0;
+  }
+}
+function ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(this$, WithFolder) {
+  const withFolder = defaultArg(WithFolder, false);
+  const path = Study_fileNameFromIdentifier(this$.Identifier);
+  const c = Contract.createCreate(path, "ISA_Study", ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(this$));
+  return toArray(delay(() => {
+    let folderFS;
+    return append(withFolder ? (folderFS = FileSystemTree.createStudiesFolder([FileSystemTree.createStudyFolder(this$.Identifier)]), collect((p) => p !== path && p !== "studies/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
+  }));
+}
+function ARCtrl_ArcStudy__ArcStudy_ToUpdateContract(this$) {
+  const path = Study_fileNameFromIdentifier(this$.Identifier);
+  return Contract.createUpdate(path, "ISA_Study", ARCtrl_ArcStudy__ArcStudy_toFsWorkbook_Static_Z4CEFA522(this$));
+}
+function ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F(c) {
+  let matchResult, fsworkbook;
+  if (c.Operation === "READ") {
+    if (c.DTOType != null) {
+      if (value(c.DTOType) === "ISA_Study") {
+        if (c.DTO != null) {
+          matchResult = 0;
+          fsworkbook = value(c.DTO);
+        } else {
+          matchResult = 1;
+        }
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0:
+      return ARCtrl_ArcStudy__ArcStudy_fromFsWorkbook_Static_32154C9D(fsworkbook);
+    default:
+      return void 0;
+  }
+}
+
+export { $007CStudyPath$007C_$007C, ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49, ARCtrl_ArcStudy__ArcStudy_ToUpdateContract, ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F };

package/dist/ts/ts/Contract/ArcWorkflow.d.ts

@@ -0,0 +1,12 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { ArcWorkflow } from '../Core/ArcTypes.js';
+import { Contract } from './Contract.js';
+export declare function $007CWorkflowPath$007C_$007C(input: string[]): Option<string>;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$: ArcWorkflow, WithFolder: Option<boolean>): Contract[];
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this$: ArcWorkflow): Contract;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract(this$: ArcWorkflow): Contract;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toDeleteContract_Static_Z1C75CB0E(workflow: ArcWorkflow): Contract;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toCreateContract_Static_3B1E4D7B(workflow: ArcWorkflow, WithFolder?: boolean): Contract[];
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toUpdateContract_Static_Z1C75CB0E(workflow: ArcWorkflow): Contract;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcWorkflow>;
+//# sourceMappingURL=ArcWorkflow.d.ts.map

package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ArcWorkflow.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcWorkflow.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,WAAW,EAA+B,MAAM,qBAAqB,CAAC;AAC/E,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAMzC,wBAAgB,4BAA4B,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0B5E;AAED,wBAAgB,yDAAyD,CAAC,KAAK,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQrI;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,gDAAgD,CAAC,KAAK,EAAE,WAAW,GAAG,QAAQ,CAG7F;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,gEAAgE,CAAC,QAAQ,EAAE,WAAW,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAExI;AAED,wBAAgB,iEAAiE,CAAC,QAAQ,EAAE,WAAW,GAAG,QAAQ,CAEjH;AAED,wBAAgB,mEAAmE,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,CA8BpH"}

package/dist/ts/ts/Contract/ArcWorkflow.js

@@ -0,0 +1,77 @@
+import { equalsWith, item } from '../../node_modules/@fable-org/fable-library-js/Array.js';
+import { combineMany } from '../FileSystem/Path.js';
+import { defaultOf } from '../../node_modules/@fable-org/fable-library-js/Util.js';
+import { value, defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+import { Workflow_fileNameFromIdentifier } from '../Core/Helper/Identifier.js';
+import { ArcWorkflow__get_Identifier } from '../Core/ArcTypes.js';
+import { Contract } from './Contract.js';
+import { ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D, ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E } from '../Spreadsheet/ArcWorkflow.js';
+import { toArray, delay, append, singleton, collect, empty } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { FileSystemTree } from '../FileSystem/FileSystemTree.js';
+
+function $007CWorkflowPath$007C_$007C(input) {
+  let matchResult;
+  if (!equalsWith((x, y) => x === y, input, defaultOf()) && input.length === 3) {
+    if (item(0, input) === "workflows") {
+      if (item(2, input) === "isa.workflow.xlsx") {
+        matchResult = 0;
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0: {
+      item(1, input);
+      return combineMany(input);
+    }
+    default:
+      return void 0;
+  }
+}
+function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$, WithFolder) {
+  const withFolder = defaultArg(WithFolder, false);
+  const path = Workflow_fileNameFromIdentifier(ArcWorkflow__get_Identifier(this$));
+  const c = Contract.createCreate(path, "ISA_Workflow", ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(this$));
+  return toArray(delay(() => {
+    let folderFS;
+    return append(withFolder ? (folderFS = FileSystemTree.createWorkflowsFolder([FileSystemTree.createWorkflowFolder(ArcWorkflow__get_Identifier(this$))]), collect((p) => p !== path && p !== "workflows/.gitkeep" ? singleton(Contract.createCreate(p, "PlainText")) : empty(), folderFS.ToFilePaths(false))) : empty(), delay(() => singleton(c)));
+  }));
+}
+function ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this$) {
+  const path = Workflow_fileNameFromIdentifier(ArcWorkflow__get_Identifier(this$));
+  return Contract.createUpdate(path, "ISA_Workflow", ARCtrl_ArcWorkflow__ArcWorkflow_toFsWorkbook_Static_Z1C75CB0E(this$));
+}
+function ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F(c) {
+  let matchResult, fsworkbook;
+  if (c.Operation === "READ") {
+    if (c.DTOType != null) {
+      if (value(c.DTOType) === "ISA_Workflow") {
+        if (c.DTO != null) {
+          matchResult = 0;
+          fsworkbook = value(c.DTO);
+        } else {
+          matchResult = 1;
+        }
+      } else {
+        matchResult = 1;
+      }
+    } else {
+      matchResult = 1;
+    }
+  } else {
+    matchResult = 1;
+  }
+  switch (matchResult) {
+    case 0:
+      return ARCtrl_ArcWorkflow__ArcWorkflow_fromFsWorkbook_Static_32154C9D(fsworkbook);
+    default:
+      return void 0;
+  }
+}
+
+export { $007CWorkflowPath$007C_$007C, ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49, ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract, ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F };

package/dist/ts/ts/Contract/Contract.d.ts

@@ -0,0 +1,39 @@
+import { Record } from '@fable-org/fable-library-js/Types.js';
+import { IComparable, IEquatable } from '@fable-org/fable-library-js/Util.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+export type DTOType = "ISA_Assay" | "ISA_Study" | "ISA_Workflow" | "ISA_Run" | "ISA_Investigation" | "ISA_Datamap" | "JSON" | "Markdown" | "CWL" | "YAML" | "PlainText" | "Cli";
+export declare class CLITool extends Record implements IEquatable<CLITool>, IComparable<CLITool> {
+    readonly Name: string;
+    readonly Arguments: string[];
+    constructor(Name: string, Arguments: string[]);
+    static create(name: string, arguments$: string[]): CLITool;
+}
+export declare function CLITool_$reflection(): TypeInfo;
+export type DTO = any | string | CLITool;
+export declare function DTO__get_isSpreadsheet(this$: DTO): boolean;
+export declare function DTO__get_isText(this$: DTO): boolean;
+export declare function DTO__get_isCLITool(this$: DTO): boolean;
+export declare function DTO__AsSpreadsheet(this$: DTO): DTO;
+export declare function DTO__AsText(this$: DTO): DTO;
+export declare function DTO__AsCLITool(this$: DTO): DTO;
+export type Operation = "CREATE" | "UPDATE" | "DELETE" | "READ" | "EXECUTE" | "RENAME";
+export declare class Contract extends Record implements IEquatable<Contract> {
+    readonly Operation: Operation;
+    readonly Path: string;
+    readonly DTOType: Option<DTOType>;
+    readonly DTO: Option<DTO>;
+    constructor(Operation: Operation, Path: string, DTOType: Option<DTOType>, DTO: Option<DTO>);
+    static create(op: Operation, path: string, { dtoType, dto }: {
+        dtoType?: DTOType;
+        dto?: DTO;
+    }): Contract;
+    static createCreate(path: string, dtoType: DTOType, dto?: DTO): Contract;
+    static createUpdate(path: string, dtoType: DTOType, dto: DTO): Contract;
+    static createDelete(path: string): Contract;
+    static createRead(path: string, dtoType: DTOType): Contract;
+    static createExecute(dto: CLITool, path?: string): Contract;
+    static createRename(oldPath: string, newPath: string): Contract;
+}
+export declare function Contract_$reflection(): TypeInfo;
+//# sourceMappingURL=Contract.d.ts.map

package/dist/ts/ts/Contract/Contract.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/ts/Contract/Contract.js

@@ -0,0 +1,45 @@
+import { Record } from '../../node_modules/@fable-org/fable-library-js/Types.js';
+import { defaultArg } from '../../node_modules/@fable-org/fable-library-js/Option.js';
+
+class CLITool extends Record {
+  constructor(Name, Arguments) {
+    super();
+    this.Name = Name;
+    this.Arguments = Arguments;
+  }
+  static create(name, arguments$) {
+    return new CLITool(name, arguments$);
+  }
+}
+class Contract extends Record {
+  constructor(Operation, Path, DTOType, DTO) {
+    super();
+    this.Operation = Operation;
+    this.Path = Path;
+    this.DTOType = DTOType;
+    this.DTO = DTO;
+  }
+  static create(op, path, { dtoType, dto }) {
+    return new Contract(op, path, dtoType, dto);
+  }
+  static createCreate(path, dtoType, dto) {
+    return new Contract("CREATE", path, dtoType, dto);
+  }
+  static createUpdate(path, dtoType, dto) {
+    return new Contract("UPDATE", path, dtoType, dto);
+  }
+  static createDelete(path) {
+    return new Contract("DELETE", path, void 0, void 0);
+  }
+  static createRead(path, dtoType) {
+    return new Contract("READ", path, dtoType, void 0);
+  }
+  static createExecute(dto, path) {
+    return new Contract("EXECUTE", defaultArg(path, ""), "Cli", dto);
+  }
+  static createRename(oldPath, newPath) {
+    return new Contract("RENAME", oldPath, void 0, newPath);
+  }
+}
+
+export { CLITool, Contract };