@nfdi4plants/arctrl 3.0.0-beta.2 → 3.0.0-beta.4

package/dist/ts/ts/Core/Process/ColumnIndex.d.ts

@@ -0,0 +1,79 @@
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Comment$ } from '../Comment.js';
+import { OntologyAnnotation } from '../OntologyAnnotation.js';
+import { ProtocolParameter } from './ProtocolParameter.js';
+import { ProcessParameterValue } from './ProcessParameterValue.js';
+import { Factor } from './Factor.js';
+import { FactorValue } from './FactorValue.js';
+import { MaterialAttribute } from './MaterialAttribute.js';
+import { MaterialAttributeValue } from './MaterialAttributeValue.js';
+import { Component } from './Component.js';
+export declare const orderName = "ColumnIndex";
+export declare function createOrderComment(index: int32): Comment$;
+export declare function tryGetIndex(comments: Comment$[]): Option<int32>;
+export declare function setOntologyAnnotationIndexInplace(i: int32, oa: OntologyAnnotation): void;
+export declare function setOntologyAnnotationIndex(i: int32, oa: OntologyAnnotation): OntologyAnnotation;
+export declare function tryGetOntologyAnnotationIndex(oa: OntologyAnnotation): Option<int32>;
+export declare function tryGetParameterIndex(param: ProtocolParameter): Option<int32>;
+export declare function tryGetParameterColumnIndex(paramValue: ProcessParameterValue): Option<int32>;
+export declare function tryGetFactorIndex(factor: Factor): Option<int32>;
+export declare function tryGetFactorColumnIndex(factorValue: FactorValue): Option<int32>;
+export declare function tryGetCharacteristicIndex(characteristic: MaterialAttribute): Option<int32>;
+export declare function tryGetCharacteristicColumnIndex(characteristicValue: MaterialAttributeValue): Option<int32>;
+export declare function tryGetComponentIndex(comp: Component): Option<int32>;
+/**
+ * Create a ISAJson Factor from ISATab string entries
+ */
+export declare function ARCtrl_OntologyAnnotation__OntologyAnnotation_fromStringWithColumnIndex_Static(name: string, term: string, source: string, accession: string, valueIndex: int32): Factor;
+export declare function ARCtrl_OntologyAnnotation__OntologyAnnotation_getColumnIndex_Static_ZDED3A0F(f: OntologyAnnotation): int32;
+export declare function ARCtrl_OntologyAnnotation__OntologyAnnotation_GetColumnIndex(this$: OntologyAnnotation): int32;
+export declare function ARCtrl_OntologyAnnotation__OntologyAnnotation_tryGetColumnIndex_Static_ZDED3A0F(f: OntologyAnnotation): Option<int32>;
+export declare function ARCtrl_OntologyAnnotation__OntologyAnnotation_TryGetColumnIndex(this$: OntologyAnnotation): Option<int32>;
+export declare function ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(i: int32, oa: OntologyAnnotation): OntologyAnnotation;
+export declare function ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4(this$: OntologyAnnotation, i: int32): void;
+/**
+ * Create a ISAJson Factor from ISATab string entries
+ */
+export declare function ARCtrl_Process_Factor__Factor_fromStringWithColumnIndex_Static(name: string, term: string, source: string, accession: string, valueIndex: int32): Factor;
+export declare function ARCtrl_Process_Factor__Factor_getColumnIndex_Static_7206F0D9(f: Factor): int32;
+export declare function ARCtrl_Process_Factor__Factor_GetColumnIndex(this$: Factor): int32;
+export declare function ARCtrl_Process_Factor__Factor_tryGetColumnIndex_Static_7206F0D9(f: Factor): Option<int32>;
+export declare function ARCtrl_Process_Factor__Factor_TryGetColumnIndex(this$: Factor): Option<int32>;
+export declare function ARCtrl_Process_FactorValue__FactorValue_getColumnIndex_Static_7105C732(f: FactorValue): int32;
+export declare function ARCtrl_Process_FactorValue__FactorValue_GetColumnIndex(this$: FactorValue): int32;
+export declare function ARCtrl_Process_FactorValue__FactorValue_tryGetColumnIndex_Static_7105C732(f: FactorValue): Option<int32>;
+export declare function ARCtrl_Process_FactorValue__FactorValue_TryGetColumnIndex(this$: FactorValue): Option<int32>;
+/**
+ * Create a ISAJson characteristic from ISATab string entries
+ */
+export declare function ARCtrl_Process_MaterialAttribute__MaterialAttribute_fromStringWithColumnIndex_Static(term: string, source: string, accession: string, valueIndex: int32): MaterialAttribute;
+export declare function ARCtrl_Process_MaterialAttribute__MaterialAttribute_getColumnIndex_Static_Z1E3B85DD(m: MaterialAttribute): int32;
+export declare function ARCtrl_Process_MaterialAttribute__MaterialAttribute_GetColumnIndex(this$: MaterialAttribute): int32;
+export declare function ARCtrl_Process_MaterialAttribute__MaterialAttribute_tryGetColumnIndex_Static_Z1E3B85DD(m: MaterialAttribute): Option<int32>;
+export declare function ARCtrl_Process_MaterialAttribute__MaterialAttribute_TryGetColumnIndex(this$: MaterialAttribute): Option<int32>;
+export declare function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_getColumnIndex_Static_Z772273B8(m: MaterialAttributeValue): int32;
+export declare function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_GetColumnIndex(this$: MaterialAttributeValue): int32;
+export declare function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_tryGetColumnIndex_Static_Z772273B8(m: MaterialAttributeValue): Option<int32>;
+export declare function ARCtrl_Process_MaterialAttributeValue__MaterialAttributeValue_TryGetColumnIndex(this$: MaterialAttributeValue): Option<int32>;
+/**
+ * Create a ISAJson parameter from ISATab string entries
+ */
+export declare function ARCtrl_Process_ProtocolParameter__ProtocolParameter_fromStringWithColumnIndex_Static(term: string, source: string, accession: string, valueIndex: int32): ProtocolParameter;
+export declare function ARCtrl_Process_ProtocolParameter__ProtocolParameter_getColumnIndex_Static_Z11F87B15(p: ProtocolParameter): int32;
+export declare function ARCtrl_Process_ProtocolParameter__ProtocolParameter_GetColumnIndex(this$: ProtocolParameter): int32;
+export declare function ARCtrl_Process_ProtocolParameter__ProtocolParameter_tryGetColumnIndex_Static_Z11F87B15(p: ProtocolParameter): Option<int32>;
+export declare function ARCtrl_Process_ProtocolParameter__ProtocolParameter_TryGetColumnIndex(this$: ProtocolParameter): Option<int32>;
+export declare function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_getColumnIndex_Static_Z1576263(p: ProcessParameterValue): int32;
+export declare function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_GetColumnIndex(this$: ProcessParameterValue): int32;
+export declare function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_tryGetColumnIndex_Static_Z1576263(p: ProcessParameterValue): Option<int32>;
+export declare function ARCtrl_Process_ProcessParameterValue__ProcessParameterValue_TryGetColumnIndex(this$: ProcessParameterValue): Option<int32>;
+/**
+ * Create a ISAJson Factor from ISATab string entries
+ */
+export declare function ARCtrl_Process_Component__Component_fromStringWithColumnIndex_Static(name: string, term: string, source: string, accession: string, valueIndex: int32): Component;
+export declare function ARCtrl_Process_Component__Component_getColumnIndex_Static_Z685B8F25(f: Component): int32;
+export declare function ARCtrl_Process_Component__Component_GetColumnIndex(this$: Component): int32;
+export declare function ARCtrl_Process_Component__Component_tryGetColumnIndex_Static_Z685B8F25(f: Component): Option<int32>;
+export declare function ARCtrl_Process_Component__Component_TryGetColumnIndex(this$: Component): Option<int32>;
+//# sourceMappingURL=ColumnIndex.d.ts.map

package/dist/ts/ts/Core/Process/ColumnIndex.d.ts.map

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package/dist/ts/ts/Core/Process/ColumnIndex.js

@@ -0,0 +1,73 @@
+import { tryParse } from '../../../node_modules/@fable-org/fable-library-js/Int32.js';
+import { FSharpRef } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
+import { bind, value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { Comment$ } from '../Comment.js';
+import { equals, int32ToString } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
+import { tryItem } from '../CommentList.js';
+import { findIndex } from '../../../node_modules/@fable-org/fable-library-js/Seq.js';
+import '../Helper/Url.js';
+
+function tryInt(str) {
+  let matchValue;
+  let outArg = 0;
+  matchValue = [tryParse(str, 511, false, 32, new FSharpRef(() => outArg, (v) => {
+    outArg = v | 0;
+  })), outArg];
+  if (matchValue[0]) {
+    return matchValue[1];
+  } else {
+    return void 0;
+  }
+}
+const orderName = "ColumnIndex";
+function createOrderComment(index) {
+  return Comment$.create(orderName, int32ToString(index));
+}
+function tryGetIndex(comments) {
+  const matchValue = tryItem(orderName, comments);
+  if (matchValue != null) {
+    const ci = value(matchValue);
+    const i = findIndex((c) => equals(c.Name, orderName), comments) | 0;
+    comments.splice(i, 1);
+    return tryInt(ci);
+  } else {
+    return void 0;
+  }
+}
+function setOntologyAnnotationIndexInplace(i, oa) {
+  void oa.Comments.push(createOrderComment(i));
+}
+function setOntologyAnnotationIndex(i, oa) {
+  const oac = oa.Copy();
+  setOntologyAnnotationIndexInplace(i, oac);
+  return oac;
+}
+function tryGetParameterIndex(param) {
+  return bind((oa) => tryGetIndex(oa.Comments), param.ParameterName);
+}
+function tryGetParameterColumnIndex(paramValue) {
+  return bind(tryGetParameterIndex, paramValue.Category);
+}
+function tryGetFactorIndex(factor) {
+  return bind((oa) => tryGetIndex(oa.Comments), factor.FactorType);
+}
+function tryGetFactorColumnIndex(factorValue) {
+  return bind(tryGetFactorIndex, factorValue.Category);
+}
+function tryGetCharacteristicIndex(characteristic) {
+  return bind((oa) => tryGetIndex(oa.Comments), characteristic.CharacteristicType);
+}
+function tryGetCharacteristicColumnIndex(characteristicValue) {
+  return bind(tryGetCharacteristicIndex, characteristicValue.Category);
+}
+function tryGetComponentIndex(comp) {
+  return bind((oa) => tryGetIndex(oa.Comments), comp.ComponentType);
+}
+function ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static(i, oa) {
+  return setOntologyAnnotationIndex(i, oa);
+}
+function ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4(this$, i) {
+  setOntologyAnnotationIndexInplace(i, this$);
+}
+
+export { ARCtrl_OntologyAnnotation__OntologyAnnotation_SetColumnIndex_Z524259A4, ARCtrl_OntologyAnnotation__OntologyAnnotation_setColumnIndex_Static, createOrderComment, orderName, setOntologyAnnotationIndex, setOntologyAnnotationIndexInplace, tryGetCharacteristicColumnIndex, tryGetCharacteristicIndex, tryGetComponentIndex, tryGetFactorColumnIndex, tryGetFactorIndex, tryGetIndex, tryGetParameterColumnIndex, tryGetParameterIndex };

package/dist/ts/ts/Core/Process/Component.d.ts

@@ -0,0 +1,65 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { OntologyAnnotation } from '../OntologyAnnotation.js';
+import { Value_$union } from '../Value.js';
+import { Record } from '@fable-org/fable-library-js/Types.js';
+import { IComparable, IEquatable } from '@fable-org/fable-library-js/Util.js';
+import { IPropertyValue } from '../IPropertyValue.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+import { Comment$ } from '../Comment.js';
+export declare class Component extends Record implements IEquatable<Component>, IComparable<Component>, IPropertyValue {
+    readonly ComponentValue: Option<Value_$union>;
+    readonly ComponentUnit: Option<OntologyAnnotation>;
+    readonly ComponentType: Option<OntologyAnnotation>;
+    constructor(ComponentValue: Option<Value_$union>, ComponentUnit: Option<OntologyAnnotation>, ComponentType: Option<OntologyAnnotation>);
+    AlternateName(): Option<string>;
+    MeasurementMethod(): Option<string>;
+    Description(): Option<string>;
+    GetCategory(): Option<OntologyAnnotation>;
+    GetAdditionalType(): string;
+    GetValue(): Option<Value_$union>;
+    GetUnit(): Option<OntologyAnnotation>;
+}
+export declare function Component_$reflection(): TypeInfo;
+export declare function Component__get_ComponentName(this$: Component): Option<string>;
+export declare function Component_make(value: Option<Value_$union>, unit: Option<OntologyAnnotation>, componentType: Option<OntologyAnnotation>): Component;
+export declare function Component_create_Z2F0B38C7(value?: Value_$union, unit?: OntologyAnnotation, componentType?: OntologyAnnotation): Component;
+export declare function Component_get_empty(): Component;
+/**
+ * This function creates a string containing full isa term triplet information about the component
+ *
+ * Components do not have enough fields in ISA-JSON to include all existing ontology term information.
+ * This function allows us, to add the same information as `Parameter`, `Characteristics`.., to `Component`.
+ * Without this string composition we loose the ontology information for the header value.
+ */
+export declare function Component_composeName(value: Value_$union, unit: Option<OntologyAnnotation>): string;
+/**
+ * This function parses the given Component header string format into the ISA-JSON Component type
+ *
+ * Components do not have enough fields in ISA-JSON to include all existing ontology term information.
+ * This function allows us, to add the same information as `Parameter`, `Characteristics`.., to `Component`.
+ * Without this string composition we loose the ontology information for the header value.
+ */
+export declare function Component_decomposeName_Z721C83C5(name: string): [Value_$union, Option<OntologyAnnotation>];
+/**
+ * Create a ISAJson Component from ISATab string entries
+ */
+export declare function Component_fromISAString_7C9A7CF8(name?: string, term?: string, source?: string, accession?: string, comments?: Comment$[]): Component;
+/**
+ * Get ISATab string entries from an ISAJson Component object
+ */
+export declare function Component_toStringObject_Z685B8F25(c: Component): [string, {
+    TermAccessionNumber: string;
+    TermName: string;
+    TermSourceREF: string;
+}];
+export declare function Component__get_NameText(this$: Component): string;
+/**
+ * Returns the ontology of the category of the Value as string
+ */
+export declare function Component__get_UnitText(this$: Component): string;
+export declare function Component__get_ValueText(this$: Component): string;
+export declare function Component__get_ValueWithUnitText(this$: Component): string;
+export declare function Component__MapCategory_658CFBF6(this$: Component, f: ((arg0: OntologyAnnotation) => OntologyAnnotation)): Component;
+export declare function Component__SetCategory_ZDED3A0F(this$: Component, c: OntologyAnnotation): Component;
+export declare function Component_createAsPV(alternateName: Option<string>, measurementMethod: Option<string>, description: Option<string>, category: Option<OntologyAnnotation>, value: Option<Value_$union>, unit: Option<OntologyAnnotation>): Component;
+//# sourceMappingURL=Component.d.ts.map

package/dist/ts/ts/Core/Process/Component.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/ts/Core/Process/Component.js

@@ -0,0 +1,121 @@
+import { value, map, unwrap, defaultArg } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { OntologyAnnotation } from '../OntologyAnnotation.js';
+import { Value, Value_Ontology, Value_Name } from '../Value.js';
+import { Record } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
+import { ActivePatterns_$007CRegex$007C_$007C } from '../Helper/Regex.js';
+import { Option_fromValueWithDefault } from '../Helper/Collections.js';
+
+class Component extends Record {
+  constructor(ComponentValue, ComponentUnit, ComponentType) {
+    super();
+    this.ComponentValue = ComponentValue;
+    this.ComponentUnit = ComponentUnit;
+    this.ComponentType = ComponentType;
+  }
+  AlternateName() {
+    const this$ = this;
+    return Component__get_ComponentName(this$);
+  }
+  MeasurementMethod() {
+    return void 0;
+  }
+  Description() {
+    return void 0;
+  }
+  GetCategory() {
+    const this$ = this;
+    return this$.ComponentType;
+  }
+  GetAdditionalType() {
+    return "Component";
+  }
+  GetValue() {
+    const this$ = this;
+    return this$.ComponentValue;
+  }
+  GetUnit() {
+    const this$ = this;
+    return this$.ComponentUnit;
+  }
+}
+function Component__get_ComponentName(this$) {
+  return map((v) => Component_composeName(v, this$.ComponentUnit), this$.ComponentValue);
+}
+function Component_make(value, unit, componentType) {
+  return new Component(value, unit, componentType);
+}
+function Component_create_Z2F0B38C7(value, unit, componentType) {
+  return Component_make(value, unit, componentType);
+}
+function Component_composeName(value$1, unit) {
+  if (value$1.tag === /* Ontology */
+  0) {
+    const oa = value$1.fields[0];
+    return `${oa.NameText} (${oa.TermAccessionShort})`;
+  } else if (unit != null) {
+    const u = value(unit);
+    return `${value$1.Text} ${u.NameText} (${u.TermAccessionShort})`;
+  } else {
+    return `${value$1.Text}`;
+  }
+}
+function Component_decomposeName_Z721C83C5(name) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("^(?<value>[\\d\\.]+) (?<unit>.+) \\((?<ontology>[^(]*:[^)]*)\\)", name);
+  if (activePatternResult != null) {
+    const unitr = value(activePatternResult);
+    let oa;
+    const tan = unitr.groups && unitr.groups.ontology || "";
+    oa = OntologyAnnotation.fromTermAnnotation(tan);
+    let v;
+    const value$1 = unitr.groups && unitr.groups.value || "";
+    v = Value.fromString(value$1);
+    const u = unitr.groups && unitr.groups.unit || "";
+    oa.Name = u;
+    return [v, oa];
+  } else {
+    const activePatternResult_1 = ActivePatterns_$007CRegex$007C_$007C("^(?<value>[^\\(]+) \\((?<ontology>[^(]*:[^)]*)\\)", name);
+    if (activePatternResult_1 != null) {
+      const r = value(activePatternResult_1);
+      let oa_1;
+      const tan_1 = r.groups && r.groups.ontology || "";
+      oa_1 = OntologyAnnotation.fromTermAnnotation(tan_1);
+      const v_1 = r.groups && r.groups.value || "";
+      oa_1.Name = v_1;
+      return [Value_Ontology(oa_1), void 0];
+    } else {
+      const activePatternResult_2 = ActivePatterns_$007CRegex$007C_$007C("^(?<value>[^\\(\\)]+) \\(\\)", name);
+      if (activePatternResult_2 != null) {
+        const r_1 = value(activePatternResult_2);
+        return [Value_Ontology(new OntologyAnnotation(r_1.groups && r_1.groups.value || "")), void 0];
+      } else {
+        return [Value_Name(name), void 0];
+      }
+    }
+  }
+}
+function Component_fromISAString_7C9A7CF8(name, term, source, accession, comments) {
+  let cType;
+  const v = OntologyAnnotation.create(unwrap(term), unwrap(source), unwrap(accession), unwrap(comments));
+  cType = Option_fromValueWithDefault(new OntologyAnnotation(), v);
+  if (name == null) {
+    return Component_make(void 0, void 0, cType);
+  } else {
+    const patternInput = Component_decomposeName_Z721C83C5(value(name));
+    return Component_make(Option_fromValueWithDefault(Value_Name(""), patternInput[0]), patternInput[1], cType);
+  }
+}
+function Component_toStringObject_Z685B8F25(c) {
+  let oa_1;
+  const value = {
+    TermAccessionNumber: "",
+    TermName: "",
+    TermSourceREF: ""
+  };
+  oa_1 = defaultArg(map((oa) => OntologyAnnotation.toStringObject(oa), c.ComponentType), value);
+  return [defaultArg(Component__get_ComponentName(c), ""), oa_1];
+}
+function Component_createAsPV(alternateName, measurementMethod, description, category, value, unit) {
+  return Component_create_Z2F0B38C7(unwrap(value), unwrap(unit), unwrap(category));
+}
+
+export { Component, Component__get_ComponentName, Component_composeName, Component_createAsPV, Component_create_Z2F0B38C7, Component_decomposeName_Z721C83C5, Component_fromISAString_7C9A7CF8, Component_make, Component_toStringObject_Z685B8F25 };

package/dist/ts/ts/Core/Process/Factor.d.ts

@@ -0,0 +1,44 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { OntologyAnnotation } from '../OntologyAnnotation.js';
+import { Comment$ } from '../Comment.js';
+import { FSharpList } from '@fable-org/fable-library-js/List.js';
+import { IEquatable } from '@fable-org/fable-library-js/Util.js';
+import { Record } from '@fable-org/fable-library-js/Types.js';
+import { IISAPrintable } from '../Helper/Printer.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+export declare class Factor extends Record implements IEquatable<Factor>, IISAPrintable {
+    readonly Name: Option<string>;
+    readonly FactorType: Option<OntologyAnnotation>;
+    readonly Comments: Option<Comment$[]>;
+    constructor(Name: Option<string>, FactorType: Option<OntologyAnnotation>, Comments: Option<Comment$[]>);
+    static make(name: Option<string>, factorType: Option<OntologyAnnotation>, comments: Option<Comment$[]>): Factor;
+    static create(Name?: string, FactorType?: OntologyAnnotation, Comments?: Comment$[]): Factor;
+    static get empty(): Factor;
+    static fromString(name: string, term: string, source: string, accession: string, comments?: Comment$[]): Factor;
+    static toStringObject(factor: Factor): {
+        TermAccessionNumber: string;
+        TermName: string;
+        TermSourceREF: string;
+    };
+    get NameText(): string;
+    MapCategory(f: ((arg0: OntologyAnnotation) => OntologyAnnotation)): Factor;
+    SetCategory(c: OntologyAnnotation): Factor;
+    static tryGetByName(name: string, factors: FSharpList<Factor>): Option<Factor>;
+    static existsByName(name: string, factors: FSharpList<Factor>): boolean;
+    static add(factors: FSharpList<Factor>, factor: Factor): FSharpList<Factor>;
+    static removeByName(name: string, factors: FSharpList<Factor>): FSharpList<Factor>;
+    static getComments(factor: Factor): Option<Comment$[]>;
+    static mapComments(f: ((arg0: Comment$[]) => Comment$[]), factor: Factor): Factor;
+    static setComments(factor: Factor, comments: Comment$[]): Factor;
+    static getFactorType(factor: Factor): Option<OntologyAnnotation>;
+    static mapFactorType(f: ((arg0: OntologyAnnotation) => OntologyAnnotation), factor: Factor): Factor;
+    static setFactorType(factor: Factor, factorType: OntologyAnnotation): Factor;
+    static tryGetName(f: Factor): Option<string>;
+    static getNameAsString(f: Factor): string;
+    static nameEqualsString(name: string, f: Factor): boolean;
+    Copy(): Factor;
+    Print(): string;
+    PrintCompact(): string;
+}
+export declare function Factor_$reflection(): TypeInfo;
+//# sourceMappingURL=Factor.d.ts.map

package/dist/ts/ts/Core/Process/Factor.d.ts.map

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package/dist/ts/ts/Core/Process/Factor.js

@@ -0,0 +1,104 @@
+import { unwrap, defaultArg, map } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { OntologyAnnotation } from '../OntologyAnnotation.js';
+import { equals } from '../../../node_modules/@fable-org/fable-library-js/Util.js';
+import { tryFind, exists, append, singleton, filter } from '../../../node_modules/@fable-org/fable-library-js/List.js';
+import { Record, toString } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
+import { Option_fromValueWithDefault, ResizeArray_map } from '../Helper/Collections.js';
+
+class Factor extends Record {
+  constructor(Name, FactorType, Comments) {
+    super();
+    this.Name = Name;
+    this.FactorType = FactorType;
+    this.Comments = Comments;
+  }
+  static make(name, factorType, comments) {
+    return new Factor(name, factorType, comments);
+  }
+  static create(Name, FactorType, Comments) {
+    return Factor.make(Name, FactorType, Comments);
+  }
+  static get empty() {
+    return Factor.create();
+  }
+  static fromString(name, term, source, accession, comments) {
+    const oa = OntologyAnnotation.create(term, source, accession, unwrap(comments));
+    const name_1 = Option_fromValueWithDefault("", name);
+    const factorType = Option_fromValueWithDefault(new OntologyAnnotation(), oa);
+    return Factor.make(name_1, factorType, void 0);
+  }
+  static toStringObject(factor) {
+    const value = {
+      TermAccessionNumber: "",
+      TermName: "",
+      TermSourceREF: ""
+    };
+    return defaultArg(map((oa) => OntologyAnnotation.toStringObject(oa), factor.FactorType), value);
+  }
+  get NameText() {
+    const this$ = this;
+    return defaultArg(this$.Name, "");
+  }
+  MapCategory(f) {
+    const this$ = this;
+    return new Factor(this$.Name, map(f, this$.FactorType), this$.Comments);
+  }
+  SetCategory(c) {
+    const this$ = this;
+    return new Factor(this$.Name, c, this$.Comments);
+  }
+  static tryGetByName(name, factors) {
+    return tryFind((f) => equals(f.Name, name), factors);
+  }
+  static existsByName(name, factors) {
+    return exists((f) => equals(f.Name, name), factors);
+  }
+  static add(factors, factor) {
+    return append(factors, singleton(factor));
+  }
+  static removeByName(name, factors) {
+    return filter((f) => !equals(f.Name, name), factors);
+  }
+  static getComments(factor) {
+    return factor.Comments;
+  }
+  static mapComments(f, factor) {
+    return new Factor(factor.Name, factor.FactorType, map(f, factor.Comments));
+  }
+  static setComments(factor, comments) {
+    return new Factor(factor.Name, factor.FactorType, comments);
+  }
+  static getFactorType(factor) {
+    return factor.FactorType;
+  }
+  static mapFactorType(f, factor) {
+    return new Factor(factor.Name, map(f, factor.FactorType), factor.Comments);
+  }
+  static setFactorType(factor, factorType) {
+    return new Factor(factor.Name, factorType, factor.Comments);
+  }
+  static tryGetName(f) {
+    return f.Name;
+  }
+  static getNameAsString(f) {
+    return f.NameText;
+  }
+  static nameEqualsString(name, f) {
+    return f.NameText === name;
+  }
+  Copy() {
+    const this$ = this;
+    const comments = map((a) => ResizeArray_map((c) => c.Copy(), a), this$.Comments);
+    return Factor.make(this$.Name, this$.FactorType, comments);
+  }
+  Print() {
+    const this$ = this;
+    return toString(this$);
+  }
+  PrintCompact() {
+    const this$ = this;
+    return "OA " + this$.NameText;
+  }
+}
+
+export { Factor };

package/dist/ts/ts/Core/Process/FactorValue.d.ts

@@ -0,0 +1,44 @@
+import { Record } from '@fable-org/fable-library-js/Types.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Factor } from './Factor.js';
+import { OntologyAnnotation } from '../OntologyAnnotation.js';
+import { IISAPrintable } from '../Helper/Printer.js';
+import { Value_$union } from '../Value.js';
+import { IEquatable } from '@fable-org/fable-library-js/Util.js';
+import { IPropertyValue } from '../IPropertyValue.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+export declare class FactorValue extends Record implements IEquatable<FactorValue>, IPropertyValue, IISAPrintable {
+    readonly ID: Option<string>;
+    readonly Category: Option<Factor>;
+    readonly Value: Option<Value_$union>;
+    readonly Unit: Option<OntologyAnnotation>;
+    constructor(ID: Option<string>, Category: Option<Factor>, Value: Option<Value_$union>, Unit: Option<OntologyAnnotation>);
+    Print(): string;
+    PrintCompact(): string;
+    AlternateName(): Option<string>;
+    MeasurementMethod(): Option<string>;
+    Description(): Option<string>;
+    GetCategory(): Option<OntologyAnnotation>;
+    GetValue(): Option<Value_$union>;
+    GetUnit(): Option<OntologyAnnotation>;
+    GetAdditionalType(): string;
+}
+export declare function FactorValue_$reflection(): TypeInfo;
+export declare function FactorValue_make(id: Option<string>, category: Option<Factor>, value: Option<Value_$union>, unit: Option<OntologyAnnotation>): FactorValue;
+export declare function FactorValue_create_30BDC49(Id?: string, Category?: Factor, Value?: Value_$union, Unit?: OntologyAnnotation): FactorValue;
+export declare function FactorValue_get_empty(): FactorValue;
+export declare function FactorValue__get_ValueText(this$: FactorValue): string;
+export declare function FactorValue__get_ValueWithUnitText(this$: FactorValue): string;
+export declare function FactorValue__get_NameText(this$: FactorValue): string;
+export declare function FactorValue__MapCategory_658CFBF6(this$: FactorValue, f: ((arg0: OntologyAnnotation) => OntologyAnnotation)): FactorValue;
+export declare function FactorValue__SetCategory_ZDED3A0F(this$: FactorValue, c: OntologyAnnotation): FactorValue;
+/**
+ * Returns the name of the factor value as string
+ */
+export declare function FactorValue_getNameAsString_7105C732(fv: FactorValue): string;
+/**
+ * Returns true if the given name matches the name of the factor value
+ */
+export declare function FactorValue_nameEqualsString(name: string, fv: FactorValue): boolean;
+export declare function FactorValue_createAsPV(alternateName: Option<string>, measurementMethod: Option<string>, description: Option<string>, category: Option<OntologyAnnotation>, value: Option<Value_$union>, unit: Option<OntologyAnnotation>): FactorValue;
+//# sourceMappingURL=FactorValue.d.ts.map

package/dist/ts/ts/Core/Process/FactorValue.d.ts.map

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package/dist/ts/ts/Core/Process/FactorValue.js

@@ -0,0 +1,68 @@
+import { Record, toString } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
+import { map, value, bind, unwrap } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { Factor } from './Factor.js';
+import '../Helper/Url.js';
+
+class FactorValue extends Record {
+  constructor(ID, Category, Value, Unit) {
+    super();
+    this.ID = ID;
+    this.Category = Category;
+    this.Value = Value;
+    this.Unit = Unit;
+  }
+  Print() {
+    const this$ = this;
+    return toString(this$);
+  }
+  PrintCompact() {
+    let value_2, category_2, category_1, value_1;
+    const this$ = this;
+    const category = map((f) => f.NameText, this$.Category);
+    const unit = map((oa) => oa.NameText, this$.Unit);
+    const value$1 = map((v) => {
+      const s = v.PrintCompact();
+      if (unit == null) {
+        return s;
+      } else {
+        return s + " " + value(unit);
+      }
+    }, this$.Value);
+    return category == null ? value$1 == null ? "" : (value_2 = value(value$1), value_2) : value$1 == null ? (category_2 = value(category), category_2 + ":No Value") : (category_1 = value(category), value_1 = value(value$1), category_1 + ":" + value_1);
+  }
+  AlternateName() {
+    return void 0;
+  }
+  MeasurementMethod() {
+    return void 0;
+  }
+  Description() {
+    return void 0;
+  }
+  GetCategory() {
+    const this$ = this;
+    return bind((f) => f.FactorType, this$.Category);
+  }
+  GetValue() {
+    const this$ = this;
+    return this$.Value;
+  }
+  GetUnit() {
+    const this$ = this;
+    return this$.Unit;
+  }
+  GetAdditionalType() {
+    return "FactorValue";
+  }
+}
+function FactorValue_make(id, category, value, unit) {
+  return new FactorValue(id, category, value, unit);
+}
+function FactorValue_create_30BDC49(Id, Category, Value, Unit) {
+  return FactorValue_make(Id, Category, Value, Unit);
+}
+function FactorValue_createAsPV(alternateName, measurementMethod, description, category, value, unit) {
+  return FactorValue_create_30BDC49(void 0, unwrap(map((c) => Factor.create(void 0, c), category)), unwrap(value), unwrap(unit));
+}
+
+export { FactorValue, FactorValue_createAsPV, FactorValue_create_30BDC49, FactorValue_make };