@nfdi4plants/arctrl 3.0.0-beta.2 → 3.0.0-beta.4

package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts

@@ -0,0 +1,44 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { uint8 } from '@fable-org/fable-library-js/Int32.js';
+import { FsWorkbook } from '../fable_modules/FsSpreadsheet.7.0.0-alpha.1/FsWorkbook.fs.js';
+export declare function FS_stat_Z721C83C5(path: string): Promise<any>;
+export declare function FS_mkdir(path: string, options: any): Promise<Option<string>>;
+export declare function FS_readdir(path: string, options: any): Promise<any[]>;
+export declare function FS_rename(oldName: string, newName: string): Promise<void>;
+export declare function FS_unlink_Z721C83C5(path: string): Promise<void>;
+export declare function FS_rm(path: string, options: any): Promise<void>;
+export declare function FS_readFile(path: string, encoding: Option<string>): Promise<any>;
+export declare function FS_writeFile(path: string, fileContent: any, encoding: Option<string>): Promise<void>;
+export declare function FS_readFileText_Z721C83C5(path: string): Promise<string>;
+export declare function FS_readFileBinary_Z721C83C5(path: string): Promise<uint8[]>;
+export declare function FS_writeFileText(path: string, text: string): Promise<void>;
+export declare function FS_writeFileBinary(path: string, bytes: uint8[]): Promise<void>;
+export declare function PathModule_dirname_Z721C83C5(path: string): Promise<string>;
+export declare function PathModule_join_Z35CD86D0(paths: string[]): Promise<string>;
+export declare function directoryExistsAsync(path: string): Promise<boolean>;
+export declare function createDirectoryAsync(path: string): Promise<void>;
+export declare function ensureDirectoryAsync(path: string): Promise<void>;
+export declare function ensureDirectoryOfFileAsync(filePath: string): Promise<void>;
+export declare function fileExistsAsync(path: string): Promise<boolean>;
+export declare function readFileTextAsync(path: string): Promise<string>;
+export declare function readFileBinaryAsync(path: string): Promise<uint8[]>;
+export declare function readFileXlsxAsync(path: string): Promise<FsWorkbook>;
+export declare function moveFileAsync(oldPath: string, newPath: string): Promise<void>;
+export declare function moveDirectoryAsync(oldPath: string, newPath: string): Promise<void>;
+export declare function deleteFileAsync(path: string): Promise<void>;
+export declare function deleteDirectoryAsync(path: string): Promise<void>;
+export declare function writeFileTextAsync(path: string, text: string): Promise<void>;
+export declare function writeFileBinaryAsync(path: string, bytes: uint8[]): Promise<void>;
+export declare function writeFileXlsxAsync(path: string, wb: FsWorkbook): Promise<void>;
+export declare function trim(path: string): string;
+/**
+ * Return the absolute path relative to the directoryPath
+ */
+export declare function makeRelative(directoryPath: string, path: string): string;
+export declare function standardizeSlashes(path: string): string;
+export declare function getSubDirectoriesAsync(path: string): Promise<string[]>;
+export declare function getSubFilesAsync(path: string): Promise<string[]>;
+export declare function getAllFilePathsAsync(directoryPath: string): Promise<string[]>;
+export declare function renameFileOrDirectoryAsync(oldPath: string, newPath: string): Promise<void>;
+export declare function deleteFileOrDirectoryAsync(path: string): Promise<void>;
+//# sourceMappingURL=FileSystemHelper.d.ts.map

package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts.map

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package/dist/ts/ts/ContractIO/FileSystemHelper.js

@@ -0,0 +1,273 @@
+import { PromiseBuilder__Run_212F1D4B, PromiseBuilder__Delay_62FBFDE1 } from '../fable_modules/Fable.Promise.3.2.0/Promise.fs.js';
+import { promise } from '../fable_modules/Fable.Promise.3.2.0/PromiseImpl.fs.js';
+import { FsSpreadsheet_FsWorkbook__FsWorkbook_fromXlsxFile_Static_Z721C83C5, FsSpreadsheet_FsWorkbook__FsWorkbook_toXlsxFile_Static } from '../fable_modules/FsSpreadsheet.Js.7.0.0-alpha.1/FsExtensions.fs.js';
+import { replace, substring, trim as trim$1 } from '../../node_modules/@fable-org/fable-library-js/String.js';
+import { map, choose } from '../../node_modules/@fable-org/fable-library-js/Array.js';
+import { toArray, isEmpty, empty, append, map as map$1, concat } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
+import { all } from '../CrossAsync.js';
+
+function FS_stat_Z721C83C5(path) {
+  const props = path;
+  return (async () => {
+    if (typeof process !== "undefined" && process.versions?.node) {
+      const dynImport = await import('fs/promises');
+      const args = Array.isArray(props) ? props : [props];
+      return await dynImport["stat"].apply(null, args);
+    } else {
+      throw new Error(`${"stat"} is not available in the browser.`);
+    }
+  })();
+}
+function FS_mkdir(path, options) {
+  const props = [path, options];
+  return (async () => {
+    if (typeof process !== "undefined" && process.versions?.node) {
+      const dynImport = await import('fs/promises');
+      const args = Array.isArray(props) ? props : [props];
+      return await dynImport["mkdir"].apply(null, args);
+    } else {
+      throw new Error(`${"mkdir"} is not available in the browser.`);
+    }
+  })();
+}
+function FS_readdir(path, options) {
+  const props = [path, options];
+  return (async () => {
+    if (typeof process !== "undefined" && process.versions?.node) {
+      const dynImport = await import('fs/promises');
+      const args = Array.isArray(props) ? props : [props];
+      return await dynImport["readdir"].apply(null, args);
+    } else {
+      throw new Error(`${"readdir"} is not available in the browser.`);
+    }
+  })();
+}
+function FS_rename(oldName, newName) {
+  const props = [oldName, newName];
+  return (async () => {
+    if (typeof process !== "undefined" && process.versions?.node) {
+      const dynImport = await import('fs/promises');
+      const args = Array.isArray(props) ? props : [props];
+      return await dynImport["rename"].apply(null, args);
+    } else {
+      throw new Error(`${"rename"} is not available in the browser.`);
+    }
+  })();
+}
+function FS_unlink_Z721C83C5(path) {
+  const props = path;
+  return (async () => {
+    if (typeof process !== "undefined" && process.versions?.node) {
+      const dynImport = await import('fs/promises');
+      const args = Array.isArray(props) ? props : [props];
+      return await dynImport["unlink"].apply(null, args);
+    } else {
+      throw new Error(`${"unlink"} is not available in the browser.`);
+    }
+  })();
+}
+function FS_rm(path, options) {
+  const props = [path, options];
+  return (async () => {
+    if (typeof process !== "undefined" && process.versions?.node) {
+      const dynImport = await import('fs/promises');
+      const args = Array.isArray(props) ? props : [props];
+      return await dynImport["rm"].apply(null, args);
+    } else {
+      throw new Error(`${"rm"} is not available in the browser.`);
+    }
+  })();
+}
+function FS_readFile(path, encoding) {
+  const props = [path, encoding];
+  return (async () => {
+    if (typeof process !== "undefined" && process.versions?.node) {
+      const dynImport = await import('fs/promises');
+      const args = Array.isArray(props) ? props : [props];
+      return await dynImport["readFile"].apply(null, args);
+    } else {
+      throw new Error(`${"readFile"} is not available in the browser.`);
+    }
+  })();
+}
+function FS_writeFile(path, fileContent, encoding) {
+  const props = [path, fileContent, encoding];
+  return (async () => {
+    if (typeof process !== "undefined" && process.versions?.node) {
+      const dynImport = await import('fs/promises');
+      const args = Array.isArray(props) ? props : [props];
+      return await dynImport["writeFile"].apply(null, args);
+    } else {
+      throw new Error(`${"writeFile"} is not available in the browser.`);
+    }
+  })();
+}
+function FS_readFileText_Z721C83C5(path) {
+  return FS_readFile(path, "utf-8");
+}
+function FS_writeFileText(path, text) {
+  return FS_writeFile(path, text, "utf-8");
+}
+function PathModule_dirname_Z721C83C5(path) {
+  const props = path;
+  return (async () => {
+    if (typeof process !== "undefined" && process.versions?.node) {
+      const dynImport = await import('path');
+      const args = Array.isArray(props) ? props : [props];
+      return await dynImport["dirname"].apply(null, args);
+    } else {
+      throw new Error(`${"dirname"} is not available in the browser.`);
+    }
+  })();
+}
+function PathModule_join_Z35CD86D0(paths) {
+  const props = paths;
+  return (async () => {
+    if (typeof process !== "undefined" && process.versions?.node) {
+      const dynImport = await import('path');
+      const args = Array.isArray(props) ? props : [props];
+      return await dynImport["join"].apply(null, args);
+    } else {
+      throw new Error(`${"join"} is not available in the browser.`);
+    }
+  })();
+}
+function directoryExistsAsync(path) {
+  const pr = PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => FS_stat_Z721C83C5(path).then((_arg) => Promise.resolve(_arg.isDirectory()))));
+  return pr.catch((_arg_1) => false);
+}
+function createDirectoryAsync(path) {
+  const pr = FS_mkdir(path, {
+    recursive: true
+  });
+  return pr.then((value) => {
+  });
+}
+function ensureDirectoryAsync(path) {
+  return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => directoryExistsAsync(path).then((_arg) => !_arg ? createDirectoryAsync(path) : Promise.resolve())));
+}
+function ensureDirectoryOfFileAsync(filePath) {
+  return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => PathModule_dirname_Z721C83C5(filePath).then((_arg) => ensureDirectoryAsync(_arg))));
+}
+function fileExistsAsync(path) {
+  const pr = PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => FS_stat_Z721C83C5(path).then((_arg) => Promise.resolve(_arg.isFile()))));
+  return pr.catch((_arg_1) => false);
+}
+function readFileTextAsync(path) {
+  return FS_readFileText_Z721C83C5(path);
+}
+function readFileXlsxAsync(path) {
+  return FsSpreadsheet_FsWorkbook__FsWorkbook_fromXlsxFile_Static_Z721C83C5(path);
+}
+function moveFileAsync(oldPath, newPath) {
+  return FS_rename(oldPath, newPath);
+}
+function moveDirectoryAsync(oldPath, newPath) {
+  return FS_rename(oldPath, newPath);
+}
+function deleteFileAsync(path) {
+  return FS_unlink_Z721C83C5(path);
+}
+function deleteDirectoryAsync(path) {
+  return FS_rm(path, {
+    force: true,
+    recursive: true
+  });
+}
+function writeFileTextAsync(path, text) {
+  return FS_writeFileText(path, text);
+}
+function writeFileXlsxAsync(path, wb) {
+  return FsSpreadsheet_FsWorkbook__FsWorkbook_toXlsxFile_Static(path, wb);
+}
+function trim(path) {
+  if (path.startsWith("./")) {
+    return trim$1(replace(path, "./", ""), "/");
+  } else {
+    return trim$1(path, "/");
+  }
+}
+function makeRelative(directoryPath, path) {
+  if ((directoryPath === "." ? true : directoryPath === "/") ? true : directoryPath === "") {
+    return path;
+  } else {
+    const directoryPath_1 = trim(directoryPath);
+    const path_1 = trim(path);
+    if (path_1.startsWith(directoryPath_1)) {
+      return substring(path_1, directoryPath_1.length);
+    } else {
+      return path_1;
+    }
+  }
+}
+function standardizeSlashes(path) {
+  return replace(path, "\\", "/");
+}
+function getSubDirectoriesAsync(path) {
+  return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => FS_readdir(path, {
+    withFileTypes: true
+  }).then((_arg) => {
+    let pr;
+    return (pr = choose((entry) => {
+      if (entry.isDirectory()) {
+        return PathModule_join_Z35CD86D0([path, entry.name]);
+      } else {
+        return void 0;
+      }
+    }, _arg), Promise.all(pr)).then((_arg_1) => Promise.resolve(map(standardizeSlashes, _arg_1)));
+  })));
+}
+function getSubFilesAsync(path) {
+  return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => FS_readdir(path, {
+    withFileTypes: true
+  }).then((_arg) => {
+    let pr;
+    return (pr = choose((entry) => {
+      if (entry.isFile()) {
+        return PathModule_join_Z35CD86D0([path, entry.name]);
+      } else {
+        return void 0;
+      }
+    }, _arg), Promise.all(pr)).then((_arg_1) => Promise.resolve(map(standardizeSlashes, _arg_1)));
+  })));
+}
+function getAllFilePathsAsync(directoryPath) {
+  const directoryPath_1 = standardizeSlashes(directoryPath);
+  return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => {
+    const allFiles = (dirs) => PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => isEmpty(dirs) ? Promise.resolve(empty()) : all(map$1(getSubFilesAsync, dirs)).then((_arg) => {
+      const subFiles_1 = concat(_arg);
+      return all(map$1(getSubDirectoriesAsync, dirs)).then((_arg_1) => all(map$1(allFiles, _arg_1)).then((_arg_2) => {
+        const subDirContents_1 = concat(_arg_2);
+        return Promise.resolve(append(subDirContents_1, subFiles_1));
+      }));
+    })));
+    return allFiles([directoryPath_1]).then((_arg_3) => {
+      const allFilesRelative = map((arg_2) => standardizeSlashes(makeRelative(directoryPath_1, arg_2)), toArray(_arg_3));
+      return Promise.resolve(allFilesRelative);
+    });
+  }));
+}
+function renameFileOrDirectoryAsync(oldPath, newPath) {
+  return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => fileExistsAsync(oldPath).then((_arg) => directoryExistsAsync(oldPath).then((_arg_1) => {
+    if (_arg) {
+      return moveFileAsync(oldPath, newPath);
+    } else if (_arg_1) {
+      return moveDirectoryAsync(oldPath, newPath);
+    } else {
+      return Promise.resolve();
+    }
+  }))));
+}
+function deleteFileOrDirectoryAsync(path) {
+  return PromiseBuilder__Run_212F1D4B(promise, PromiseBuilder__Delay_62FBFDE1(promise, () => fileExistsAsync(path).then((_arg) => directoryExistsAsync(path).then((_arg_1) => {
+    if (_arg) {
+      return deleteFileAsync(path);
+    } else if (_arg_1) {
+      return deleteDirectoryAsync(path);
+    } else {
+      return Promise.resolve();
+    }
+  }))));
+}
+
+export { FS_mkdir, FS_readFile, FS_readFileText_Z721C83C5, FS_readdir, FS_rename, FS_rm, FS_stat_Z721C83C5, FS_unlink_Z721C83C5, FS_writeFile, FS_writeFileText, PathModule_dirname_Z721C83C5, PathModule_join_Z35CD86D0, createDirectoryAsync, deleteDirectoryAsync, deleteFileAsync, deleteFileOrDirectoryAsync, directoryExistsAsync, ensureDirectoryAsync, ensureDirectoryOfFileAsync, fileExistsAsync, getAllFilePathsAsync, getSubDirectoriesAsync, getSubFilesAsync, makeRelative, moveDirectoryAsync, moveFileAsync, readFileTextAsync, readFileXlsxAsync, renameFileOrDirectoryAsync, standardizeSlashes, trim, writeFileTextAsync, writeFileXlsxAsync };

package/dist/ts/ts/Conversion.d.ts

@@ -0,0 +1,292 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { LDGraph, LDNode } from './ROCrate/LDObject.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+import { Comment$ } from './Core/Comment.js';
+import { LDContext } from './ROCrate/LDContext.js';
+import { OntologyAnnotation } from './Core/OntologyAnnotation.js';
+import { Data } from './Core/Data.js';
+import { CompositeCell_$union } from './Core/Table/CompositeCell.js';
+import { CompositeHeader_$union } from './Core/Table/CompositeHeader.js';
+import { FileSystem } from './FileSystem/FileSystem.js';
+import { DataContext } from './Core/DataContext.js';
+import { ArcTable } from './Core/Table/ArcTable.js';
+import { FSharpList } from '@fable-org/fable-library-js/List.js';
+import { ArcTables } from './Core/Table/ArcTables.js';
+import { DataMap } from './Core/DataMap.js';
+import { Person } from './Core/Person.js';
+import { Publication } from './Core/Publication.js';
+import { ArcInvestigation, ArcStudy, ArcAssay } from './Core/ArcTypes.js';
+export declare function DateTime_tryFromString(s: string): Option<Date>;
+export declare function DateTime_toString(d: Date): string;
+export declare const ColumnIndex_orderName = "columnIndex";
+export declare function ColumnIndex_tryGetIndex(node: LDNode): Option<int32>;
+export declare function ColumnIndex_setIndex(node: LDNode, index: int32): void;
+export declare function ARCtrl_ROCrate_LDNode__LDNode_GetColumnIndex(this$: LDNode): int32;
+export declare function ARCtrl_ROCrate_LDNode__LDNode_TryGetColumnIndex(this$: LDNode): Option<int32>;
+export declare function ARCtrl_ROCrate_LDNode__LDNode_SetColumnIndex_Z524259A4(this$: LDNode, index: int32): void;
+export declare class BaseTypes {
+    constructor();
+}
+export declare function BaseTypes_$reflection(): TypeInfo;
+export declare function BaseTypes_composeComment_Z13201A7E(comment: Comment$): LDNode;
+export declare function BaseTypes_decomposeComment_Z2F770004(comment: LDNode, context?: LDContext): Comment$;
+export declare function BaseTypes_ontologyTermFromNameAndID_40457300(name?: string, id?: string): OntologyAnnotation;
+export declare function BaseTypes_tryOntologyTermFromNameAndID_40457300(name?: string, id?: string): Option<OntologyAnnotation>;
+export declare function BaseTypes_composeDefinedTerm_ZDED3A0F(term: OntologyAnnotation): LDNode;
+export declare function BaseTypes_decomposeDefinedTerm_Z2F770004(term: LDNode, context?: LDContext): OntologyAnnotation;
+export declare function BaseTypes_composePropertyValueFromOA_ZDED3A0F(term: OntologyAnnotation): LDNode;
+export declare function BaseTypes_decomposePropertyValueToOA_Z2F770004(term: LDNode, context?: LDContext): OntologyAnnotation;
+/**
+ * Convert a CompositeCell to a ISA Value and Unit tuple.
+ */
+export declare function BaseTypes_valuesOfCell_Z436420FE(value: CompositeCell_$union): [Option<string>, Option<string>, Option<string>, Option<string>];
+export declare function BaseTypes_termOfHeader_6CAF647B(header: CompositeHeader_$union): [string, Option<string>];
+/**
+ * Convert a CompositeHeader and Cell tuple to a ISA Component
+ */
+export declare function BaseTypes_composeComponent(header: CompositeHeader_$union, value: CompositeCell_$union): LDNode;
+/**
+ * Convert a CompositeHeader and Cell tuple to a ISA ProcessParameterValue
+ */
+export declare function BaseTypes_composeParameterValue(header: CompositeHeader_$union, value: CompositeCell_$union): LDNode;
+/**
+ * Convert a CompositeHeader and Cell tuple to a ISA FactorValue
+ */
+export declare function BaseTypes_composeFactorValue(header: CompositeHeader_$union, value: CompositeCell_$union): LDNode;
+/**
+ * Convert a CompositeHeader and Cell tuple to a ISA MaterialAttributeValue
+ */
+export declare function BaseTypes_composeCharacteristicValue(header: CompositeHeader_$union, value: CompositeCell_$union): LDNode;
+export declare function BaseTypes_composeFreetextMaterialName(headerFT: string, name: string): string;
+export declare function BaseTypes_composeFile_6CE21C7D(d: Data, fs?: FileSystem): LDNode;
+export declare function BaseTypes_decomposeFile_Z2F770004(f: LDNode, context?: LDContext): Data;
+export declare function BaseTypes_composeFragmentDescriptor_Z4C0BEF62(dc: DataContext): LDNode;
+export declare function BaseTypes_decomposeFragmentDescriptor_Z6839B9E8(fd: LDNode, graph?: LDGraph, context?: LDContext): DataContext;
+/**
+ * Convert a CompositeHeader and Cell tuple to a ISA ProcessInput
+ */
+export declare function BaseTypes_composeProcessInput(header: CompositeHeader_$union, value: CompositeCell_$union, fs: Option<FileSystem>): LDNode;
+/**
+ * Convert a CompositeHeader and Cell tuple to a ISA ProcessOutput
+ */
+export declare function BaseTypes_composeProcessOutput(header: CompositeHeader_$union, value: CompositeCell_$union, fs: Option<FileSystem>): LDNode;
+export declare function BaseTypes_headerOntologyOfPropertyValue_Z2F770004(pv: LDNode, context?: LDContext): OntologyAnnotation;
+/**
+ * Convert an ISA Value and Unit tuple to a CompositeCell
+ */
+export declare function BaseTypes_cellOfPropertyValue_Z2F770004(pv: LDNode, context?: LDContext): CompositeCell_$union;
+/**
+ * Convert an ISA Component to a CompositeHeader and Cell tuple
+ */
+export declare function BaseTypes_decomposeComponent_Z2F770004(c: LDNode, context?: LDContext): [CompositeHeader_$union, CompositeCell_$union];
+/**
+ * Convert an ISA ProcessParameterValue to a CompositeHeader and Cell tuple
+ */
+export declare function BaseTypes_decomposeParameterValue_Z2F770004(c: LDNode, context?: LDContext): [CompositeHeader_$union, CompositeCell_$union];
+/**
+ * Convert an ISA FactorValue to a CompositeHeader and Cell tuple
+ */
+export declare function BaseTypes_decomposeFactorValue_Z2F770004(c: LDNode, context?: LDContext): [CompositeHeader_$union, CompositeCell_$union];
+/**
+ * Convert an ISA MaterialAttributeValue to a CompositeHeader and Cell tuple
+ */
+export declare function BaseTypes_decomposeCharacteristicValue_Z2F770004(c: LDNode, context?: LDContext): [CompositeHeader_$union, CompositeCell_$union];
+/**
+ * Convert an ISA ProcessOutput to a CompositeHeader and Cell tuple
+ */
+export declare function BaseTypes_decomposeProcessInput_Z2F770004(pn: LDNode, context?: LDContext): [CompositeHeader_$union, CompositeCell_$union];
+export declare function BaseTypes_decomposeProcessOutput_Z2F770004(pn: LDNode, context?: LDContext): [CompositeHeader_$union, CompositeCell_$union];
+/**
+ * This function creates a string containing the name and the ontology short-string of the given ontology annotation term
+ *
+ * TechnologyPlatforms are plain strings in ISA-JSON.
+ *
+ * This function allows us, to parse them as an ontology term.
+ */
+export declare function BaseTypes_composeTechnologyPlatform_ZDED3A0F(tp: OntologyAnnotation): string;
+/**
+ * This function parses the given string containing the name and the ontology short-string of the given ontology annotation term
+ *
+ * TechnologyPlatforms are plain strings in ISA-JSON.
+ *
+ * This function allows us, to parse them as an ontology term.
+ */
+export declare function BaseTypes_decomposeTechnologyPlatform_Z721C83C5(name: string): OntologyAnnotation;
+export declare class ProcessConversion {
+    constructor();
+}
+export declare function ProcessConversion_$reflection(): TypeInfo;
+export declare function ProcessConversion_tryGetProtocolType_Z6839B9E8(pv: LDNode, graph?: LDGraph, context?: LDContext): Option<OntologyAnnotation>;
+export declare function ProcessConversion_composeProcessName(processNameRoot: string, i: int32): string;
+export declare function ProcessConversion_decomposeProcessName_Z721C83C5(name: string): [string, Option<int32>];
+/**
+ * If the given headers depict a component, returns a function for parsing the values of the matrix to the values of this component
+ */
+export declare function ProcessConversion_tryComponentGetter(generalI: int32, valueI: int32, valueHeader: CompositeHeader_$union): Option<((arg0: ArcTable) => ((arg0: int32) => LDNode))>;
+/**
+ * If the given headers depict a parameter, returns a function for parsing the values of the matrix to the values of this type
+ */
+export declare function ProcessConversion_tryParameterGetter(generalI: int32, valueI: int32, valueHeader: CompositeHeader_$union): Option<((arg0: ArcTable) => ((arg0: int32) => LDNode))>;
+/**
+ * If the given headers depict a factor, returns a function for parsing the values of the matrix to the values of this type
+ */
+export declare function ProcessConversion_tryFactorGetter(generalI: int32, valueI: int32, valueHeader: CompositeHeader_$union): Option<((arg0: ArcTable) => ((arg0: int32) => LDNode))>;
+/**
+ * If the given headers depict a protocolType, returns a function for parsing the values of the matrix to the values of this type
+ */
+export declare function ProcessConversion_tryCharacteristicGetter(generalI: int32, valueI: int32, valueHeader: CompositeHeader_$union): Option<((arg0: ArcTable) => ((arg0: int32) => LDNode))>;
+/**
+ * If the given headers depict a protocolType, returns a function for parsing the values of the matrix to the values of this type
+ */
+export declare function ProcessConversion_tryGetProtocolTypeGetter(generalI: int32, header: CompositeHeader_$union): Option<((arg0: ArcTable) => ((arg0: int32) => LDNode))>;
+/**
+ * If the given headers depict a protocolREF, returns a function for parsing the values of the matrix to the values of this type
+ */
+export declare function ProcessConversion_tryGetProtocolREFGetter(generalI: int32, header: CompositeHeader_$union): Option<((arg0: ArcTable) => ((arg0: int32) => string))>;
+/**
+ * If the given headers depict a protocolDescription, returns a function for parsing the values of the matrix to the values of this type
+ */
+export declare function ProcessConversion_tryGetProtocolDescriptionGetter(generalI: int32, header: CompositeHeader_$union): Option<((arg0: ArcTable) => ((arg0: int32) => string))>;
+/**
+ * If the given headers depict a protocolURI, returns a function for parsing the values of the matrix to the values of this type
+ */
+export declare function ProcessConversion_tryGetProtocolURIGetter(generalI: int32, header: CompositeHeader_$union): Option<((arg0: ArcTable) => ((arg0: int32) => string))>;
+/**
+ * If the given headers depict a protocolVersion, returns a function for parsing the values of the matrix to the values of this type
+ */
+export declare function ProcessConversion_tryGetProtocolVersionGetter(generalI: int32, header: CompositeHeader_$union): Option<((arg0: ArcTable) => ((arg0: int32) => string))>;
+/**
+ * If the given headers depict an input, returns a function for parsing the values of the matrix to the values of this type
+ */
+export declare function ProcessConversion_tryGetInputGetter(generalI: int32, header: CompositeHeader_$union, fs: Option<FileSystem>): Option<((arg0: ArcTable) => ((arg0: int32) => LDNode))>;
+/**
+ * If the given headers depict an output, returns a function for parsing the values of the matrix to the values of this type
+ */
+export declare function ProcessConversion_tryGetOutputGetter(generalI: int32, header: CompositeHeader_$union, fs: Option<FileSystem>): Option<((arg0: ArcTable) => ((arg0: int32) => LDNode))>;
+/**
+ * If the given headers depict a comment, returns a function for parsing the values of the matrix to the values of this type
+ */
+export declare function ProcessConversion_tryGetCommentGetter(generalI: int32, header: CompositeHeader_$union): Option<((arg0: ArcTable) => ((arg0: int32) => string))>;
+export declare function ProcessConversion_tryGetPerformerGetter(generalI: int32, header: CompositeHeader_$union): Option<((arg0: ArcTable) => ((arg0: int32) => LDNode))>;
+/**
+ * Given the header sequence of an ArcTable, returns a function for parsing each row of the table to a process
+ */
+export declare function ProcessConversion_getProcessGetter(assayName: Option<string>, studyName: Option<string>, processNameRoot: string, headers: Iterable<CompositeHeader_$union>, fs: Option<FileSystem>): ((arg0: ArcTable) => ((arg0: int32) => LDNode));
+/**
+ * Groups processes by their name, or by the name of the protocol they execute
+ *
+ * Process names are taken from the Worksheet name and numbered: SheetName_1, SheetName_2, etc.
+ *
+ * This function decomposes this name into a root name and a number, and groups processes by root name.
+ */
+export declare function ProcessConversion_groupProcesses_Z27F0B586(processes: FSharpList<LDNode>, graph?: LDGraph, context?: LDContext): FSharpList<[string, FSharpList<LDNode>]>;
+/**
+ * Merges processes with the same name, protocol and param values
+ */
+export declare function ProcessConversion_processToRows_Z6839B9E8(p: LDNode, graph?: LDGraph, context?: LDContext): FSharpList<[CompositeHeader_$union, CompositeCell_$union]>[];
+export declare function CompositeRow_toProtocol(tableName: string, row: Iterable<[CompositeHeader_$union, CompositeCell_$union]>): LDNode;
+/**
+ * Create a new table from an ISA protocol.
+ *
+ * The table will have at most one row, with the protocol information and the component values
+ */
+export declare function ARCtrl_ArcTable__ArcTable_fromProtocol_Static_Z6839B9E8(p: LDNode, graph?: LDGraph, context?: LDContext): ArcTable;
+/**
+ * Returns the list of protocols executed in this ArcTable
+ */
+export declare function ARCtrl_ArcTable__ArcTable_GetProtocols(this$: ArcTable): FSharpList<LDNode>;
+/**
+ * Returns the list of processes specidified in this ArcTable
+ */
+export declare function ARCtrl_ArcTable__ArcTable_GetProcesses_5E660E5C(this$: ArcTable, assayName: Option<string>, studyName: Option<string>, fs: Option<FileSystem>): FSharpList<LDNode>;
+/**
+ * Create a new table from a list of processes
+ *
+ * The name will be used as the sheet name
+ *
+ * The processes SHOULD have the same headers, or even execute the same protocol
+ */
+export declare function ARCtrl_ArcTable__ArcTable_fromProcesses_Static_Z3575FB5F(name: string, ps: FSharpList<LDNode>, graph?: LDGraph, context?: LDContext): ArcTable;
+/**
+ * Return a list of all the processes in all the tables.
+ */
+export declare function ARCtrl_ArcTables__ArcTables_GetProcesses_5E660E5C(this$: ArcTables, assayName: Option<string>, studyName: Option<string>, fs: Option<FileSystem>): FSharpList<LDNode>;
+/**
+ * Create a collection of tables from a list of processes.
+ *
+ * For this, the processes are grouped by nameroot ("nameroot_1", "nameroot_2" ...) or exectued protocol if no name exists
+ *
+ * Then each group is converted to a table with this nameroot as sheetname
+ */
+export declare function ARCtrl_ArcTables__ArcTables_fromProcesses_Static_Z27F0B586(ps: FSharpList<LDNode>, graph?: LDGraph, context?: LDContext): ArcTables;
+export declare class DatamapConversion {
+    constructor();
+}
+export declare function DatamapConversion_$reflection(): TypeInfo;
+export declare function DatamapConversion_composeFragmentDescriptors_Z8923FA3(datamap: DataMap): LDNode[];
+export declare function DatamapConversion_decomposeFragmentDescriptors_Z6E59645F(fragmentDescriptors: LDNode[], graph?: LDGraph, context?: LDContext): DataMap;
+export declare class PersonConversion {
+    constructor();
+}
+export declare function PersonConversion_$reflection(): TypeInfo;
+export declare function PersonConversion_get_orcidKey(): string;
+export declare function PersonConversion_composeAffiliation_Z721C83C5(affiliation: string): LDNode;
+export declare function PersonConversion_decomposeAffiliation_Z2F770004(affiliation: LDNode, context?: LDContext): string;
+export declare function PersonConversion_composeAddress_Z721C83C5(address: string): any;
+export declare function PersonConversion_decomposeAddress_4E60E31B(address: any): string;
+export declare function PersonConversion_composePerson_Z64D846DC(person: Person): LDNode;
+export declare function PersonConversion_decomposePerson_Z6839B9E8(person: LDNode, graph?: LDGraph, context?: LDContext): Person;
+export declare class ScholarlyArticleConversion {
+    constructor();
+}
+export declare function ScholarlyArticleConversion_$reflection(): TypeInfo;
+export declare function ScholarlyArticleConversion_composeAuthor_Z721C83C5(author: string): LDNode;
+export declare function ScholarlyArticleConversion_splitAuthors_Z721C83C5(a: string): string[];
+export declare function ScholarlyArticleConversion_composeAuthors_Z721C83C5(authors: string): LDNode[];
+export declare function ScholarlyArticleConversion_decomposeAuthor_Z2F770004(author: LDNode, context?: LDContext): string;
+export declare function ScholarlyArticleConversion_decomposeAuthors_1AAAE9A5(authors: LDNode[], context?: LDContext): string;
+export declare function ScholarlyArticleConversion_composeScholarlyArticle_D324A6D(publication: Publication): LDNode;
+export declare function ScholarlyArticleConversion_decomposeScholarlyArticle_Z6839B9E8(sa: LDNode, graph?: LDGraph, context?: LDContext): Publication;
+export declare class AssayConversion {
+    constructor();
+}
+export declare function AssayConversion_$reflection(): TypeInfo;
+export declare function AssayConversion_getDataFilesFromProcesses_6BABD1B0(processes: LDNode[], fragmentDescriptors?: LDNode[], graph?: LDGraph, context?: LDContext): LDNode[];
+export declare function AssayConversion_composeAssay_Z5C53FD5C(assay: ArcAssay, fs?: FileSystem): LDNode;
+export declare function AssayConversion_decomposeAssay_Z6839B9E8(assay: LDNode, graph?: LDGraph, context?: LDContext): ArcAssay;
+export declare class StudyConversion {
+    constructor();
+}
+export declare function StudyConversion_$reflection(): TypeInfo;
+export declare function StudyConversion_composeStudy_ZFE0E38E(study: ArcStudy, fs?: FileSystem): LDNode;
+export declare function StudyConversion_decomposeStudy_Z6839B9E8(study: LDNode, graph?: LDGraph, context?: LDContext): ArcStudy;
+export declare class InvestigationConversion {
+    constructor();
+}
+export declare function InvestigationConversion_$reflection(): TypeInfo;
+export declare function InvestigationConversion_composeInvestigation_5AEC717D(investigation: ArcInvestigation, fs?: FileSystem): LDNode;
+export declare function InvestigationConversion_decomposeInvestigation_Z6839B9E8(investigation: LDNode, graph?: LDGraph, context?: LDContext): ArcInvestigation;
+export declare function ARCtrl_ArcAssay__ArcAssay_ToROCrateAssay_1695DD5C(this$: ArcAssay, fs: Option<FileSystem>): LDNode;
+export declare function ARCtrl_ArcAssay__ArcAssay_fromROCrateAssay_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcAssay;
+export declare function ARCtrl_ArcStudy__ArcStudy_ToROCrateStudy_1695DD5C(this$: ArcStudy, fs: Option<FileSystem>): LDNode;
+export declare function ARCtrl_ArcStudy__ArcStudy_fromROCrateStudy_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcStudy;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToROCrateInvestigation_1695DD5C(this$: ArcInvestigation, fs: Option<FileSystem>): LDNode;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_fromROCrateInvestigation_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcInvestigation;
+export declare class TypeExtensions_Conversion {
+    constructor();
+    static arcAssayToDataset(a: ArcAssay, fs?: FileSystem): LDNode;
+    static datasetToArcAssay(a: LDNode, graph?: LDGraph, context?: LDContext): ArcAssay;
+    static arcStudyToDataset(a: ArcStudy, fs?: FileSystem): LDNode;
+    static datasetToArcStudy(a: LDNode, graph?: LDGraph, context?: LDContext): ArcStudy;
+    static arcInvestigationToDataset(a: ArcInvestigation, fs?: FileSystem): LDNode;
+    static datasetToArcInvestigation(a: LDNode, graph?: LDGraph, context?: LDContext): ArcInvestigation;
+}
+export declare function TypeExtensions_Conversion_$reflection(): TypeInfo;
+export declare function ARCtrl_ROCrate_Dataset__Dataset_toArcAssay_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcAssay;
+export declare function ARCtrl_ROCrate_Dataset__Dataset_fromArcAssay_Static_1501C0F8(a: ArcAssay): LDNode;
+export declare function ARCtrl_ROCrate_Dataset__Dataset_toArcStudy_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcStudy;
+export declare function ARCtrl_ROCrate_Dataset__Dataset_fromArcStudy_Static_1680536E(a: ArcStudy): LDNode;
+export declare function ARCtrl_ROCrate_Dataset__Dataset_toArcInvestigation_Static_Z6839B9E8(a: LDNode, graph?: LDGraph, context?: LDContext): ArcInvestigation;
+export declare function ARCtrl_ROCrate_Dataset__Dataset_fromArcInvestigation_Static_Z720BD3FF(a: ArcInvestigation): LDNode;
+//# sourceMappingURL=Conversion.d.ts.map

package/dist/ts/ts/Conversion.d.ts.map

@@ -0,0 +1 @@
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