@nfdi4plants/arctrl 3.0.0-beta.2 → 3.0.0-beta.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +2 -0
- package/dist/ts/index.d.ts +61 -0
- package/dist/ts/index.d.ts.map +1 -0
- package/dist/ts/index.js +63 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Array.js +354 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Async.js +28 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/AsyncBuilder.js +186 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/BigInt.js +8 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Boolean.js +24 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Char.js +73 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/CollectionUtil.js +31 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Date.js +574 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/DateOffset.js +59 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Decimal.js +65 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Double.js +30 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/FSharp.Core.js +5 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Global.js +5 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Guid.js +48 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Int32.js +120 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/List.js +680 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Long.js +40 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Map.js +655 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/MapUtil.js +105 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/MutableMap.js +320 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/MutableSet.js +204 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Native.js +10 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Numeric.js +73 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Option.js +65 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Range.js +23 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Reflection.js +111 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/RegExp.js +114 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Result.js +36 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Seq.js +846 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Seq2.js +65 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Set.js +1160 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/String.js +364 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/System.Text.js +40 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Types.js +193 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Unicode.13.0.0.js +6 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Uri.js +160 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/Util.js +367 -0
- package/dist/ts/node_modules/@fable-org/fable-library-js/lib/big.js +825 -0
- package/dist/ts/ts/ARC.d.ts +80 -0
- package/dist/ts/ts/ARC.d.ts.map +1 -0
- package/dist/ts/ts/ARC.js +914 -0
- package/dist/ts/ts/Contract/ARC.d.ts +7 -0
- package/dist/ts/ts/Contract/ARC.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ARC.js +52 -0
- package/dist/ts/ts/Contract/ArcAssay.d.ts +12 -0
- package/dist/ts/ts/Contract/ArcAssay.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ArcAssay.js +80 -0
- package/dist/ts/ts/Contract/ArcInvestigation.d.ts +10 -0
- package/dist/ts/ts/Contract/ArcInvestigation.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ArcInvestigation.js +57 -0
- package/dist/ts/ts/Contract/ArcRun.d.ts +12 -0
- package/dist/ts/ts/Contract/ArcRun.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ArcRun.js +76 -0
- package/dist/ts/ts/Contract/ArcStudy.d.ts +13 -0
- package/dist/ts/ts/Contract/ArcStudy.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ArcStudy.js +76 -0
- package/dist/ts/ts/Contract/ArcWorkflow.d.ts +12 -0
- package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ArcWorkflow.js +77 -0
- package/dist/ts/ts/Contract/Contract.d.ts +39 -0
- package/dist/ts/ts/Contract/Contract.d.ts.map +1 -0
- package/dist/ts/ts/Contract/Contract.js +45 -0
- package/dist/ts/ts/Contract/Datamap.d.ts +29 -0
- package/dist/ts/ts/Contract/Datamap.d.ts.map +1 -0
- package/dist/ts/ts/Contract/Datamap.js +221 -0
- package/dist/ts/ts/Contract/Git.d.ts +28 -0
- package/dist/ts/ts/Contract/Git.d.ts.map +1 -0
- package/dist/ts/ts/Contract/Git.js +57 -0
- package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts +12 -0
- package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ValidationPackagesConfig.js +57 -0
- package/dist/ts/ts/ContractIO/ContractIO.d.ts +11 -0
- package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -0
- package/dist/ts/ts/ContractIO/ContractIO.js +202 -0
- package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts +44 -0
- package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts.map +1 -0
- package/dist/ts/ts/ContractIO/FileSystemHelper.js +273 -0
- package/dist/ts/ts/Conversion.d.ts +292 -0
- package/dist/ts/ts/Conversion.d.ts.map +1 -0
- package/dist/ts/ts/Conversion.js +1247 -0
- package/dist/ts/ts/Core/ArcTypes.d.ts +620 -0
- package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -0
- package/dist/ts/ts/Core/ArcTypes.js +3393 -0
- package/dist/ts/ts/Core/Comment.d.ts +35 -0
- package/dist/ts/ts/Core/Comment.d.ts.map +1 -0
- package/dist/ts/ts/Core/Comment.js +91 -0
- package/dist/ts/ts/Core/CommentList.d.ts +28 -0
- package/dist/ts/ts/Core/CommentList.d.ts.map +1 -0
- package/dist/ts/ts/Core/CommentList.js +27 -0
- package/dist/ts/ts/Core/Conversion.d.ts +215 -0
- package/dist/ts/ts/Core/Conversion.d.ts.map +1 -0
- package/dist/ts/ts/Core/Conversion.js +923 -0
- package/dist/ts/ts/Core/Data.d.ts +49 -0
- package/dist/ts/ts/Core/Data.d.ts.map +1 -0
- package/dist/ts/ts/Core/Data.js +179 -0
- package/dist/ts/ts/Core/DataContext.d.ts +47 -0
- package/dist/ts/ts/Core/DataContext.d.ts.map +1 -0
- package/dist/ts/ts/Core/DataContext.js +108 -0
- package/dist/ts/ts/Core/DataFile.d.ts +27 -0
- package/dist/ts/ts/Core/DataFile.d.ts.map +1 -0
- package/dist/ts/ts/Core/DataFile.js +50 -0
- package/dist/ts/ts/Core/DataMap.d.ts +52 -0
- package/dist/ts/ts/Core/DataMap.d.ts.map +1 -0
- package/dist/ts/ts/Core/DataMap.js +53 -0
- package/dist/ts/ts/Core/Helper/Collections.d.ts +61 -0
- package/dist/ts/ts/Core/Helper/Collections.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/Collections.js +323 -0
- package/dist/ts/ts/Core/Helper/HashCodes.d.ts +9 -0
- package/dist/ts/ts/Core/Helper/HashCodes.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/HashCodes.js +35 -0
- package/dist/ts/ts/Core/Helper/Identifier.d.ts +119 -0
- package/dist/ts/ts/Core/Helper/Identifier.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/Identifier.js +96 -0
- package/dist/ts/ts/Core/Helper/ORCID.d.ts +7 -0
- package/dist/ts/ts/Core/Helper/ORCID.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/ORCID.js +34 -0
- package/dist/ts/ts/Core/Helper/Regex.d.ts +194 -0
- package/dist/ts/ts/Core/Helper/Regex.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/Regex.js +296 -0
- package/dist/ts/ts/Core/Helper/SemVer.d.ts +20 -0
- package/dist/ts/ts/Core/Helper/SemVer.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/SemVer.js +31 -0
- package/dist/ts/ts/Core/Helper/Url.d.ts +10 -0
- package/dist/ts/ts/Core/Helper/Url.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/Url.js +32 -0
- package/dist/ts/ts/Core/IdentifierSetters.d.ts +7 -0
- package/dist/ts/ts/Core/IdentifierSetters.d.ts.map +1 -0
- package/dist/ts/ts/Core/IdentifierSetters.js +9 -0
- package/dist/ts/ts/Core/OntologyAnnotation.d.ts +57 -0
- package/dist/ts/ts/Core/OntologyAnnotation.d.ts.map +1 -0
- package/dist/ts/ts/Core/OntologyAnnotation.js +207 -0
- package/dist/ts/ts/Core/OntologySourceReference.d.ts +31 -0
- package/dist/ts/ts/Core/OntologySourceReference.d.ts.map +1 -0
- package/dist/ts/ts/Core/OntologySourceReference.js +84 -0
- package/dist/ts/ts/Core/Person.d.ts +56 -0
- package/dist/ts/ts/Core/Person.d.ts.map +1 -0
- package/dist/ts/ts/Core/Person.js +183 -0
- package/dist/ts/ts/Core/Process/ColumnIndex.d.ts +79 -0
- package/dist/ts/ts/Core/Process/ColumnIndex.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/ColumnIndex.js +73 -0
- package/dist/ts/ts/Core/Process/Component.d.ts +65 -0
- package/dist/ts/ts/Core/Process/Component.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Component.js +121 -0
- package/dist/ts/ts/Core/Process/Factor.d.ts +44 -0
- package/dist/ts/ts/Core/Process/Factor.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Factor.js +104 -0
- package/dist/ts/ts/Core/Process/FactorValue.d.ts +44 -0
- package/dist/ts/ts/Core/Process/FactorValue.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/FactorValue.js +68 -0
- package/dist/ts/ts/Core/Process/Material.d.ts +27 -0
- package/dist/ts/ts/Core/Process/Material.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Material.js +49 -0
- package/dist/ts/ts/Core/Process/MaterialAttribute.d.ts +53 -0
- package/dist/ts/ts/Core/Process/MaterialAttribute.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/MaterialAttribute.js +30 -0
- package/dist/ts/ts/Core/Process/MaterialAttributeValue.d.ts +55 -0
- package/dist/ts/ts/Core/Process/MaterialAttributeValue.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/MaterialAttributeValue.js +68 -0
- package/dist/ts/ts/Core/Process/MaterialType.d.ts +22 -0
- package/dist/ts/ts/Core/Process/MaterialType.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/MaterialType.js +28 -0
- package/dist/ts/ts/Core/Process/Process.d.ts +113 -0
- package/dist/ts/ts/Core/Process/Process.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Process.js +136 -0
- package/dist/ts/ts/Core/Process/ProcessInput.d.ts +117 -0
- package/dist/ts/ts/Core/Process/ProcessInput.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/ProcessInput.js +207 -0
- package/dist/ts/ts/Core/Process/ProcessOutput.d.ts +106 -0
- package/dist/ts/ts/Core/Process/ProcessOutput.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/ProcessOutput.js +178 -0
- package/dist/ts/ts/Core/Process/ProcessParameterValue.d.ts +40 -0
- package/dist/ts/ts/Core/Process/ProcessParameterValue.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/ProcessParameterValue.js +135 -0
- package/dist/ts/ts/Core/Process/ProcessSequence.d.ts +89 -0
- package/dist/ts/ts/Core/Process/ProcessSequence.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/ProcessSequence.js +56 -0
- package/dist/ts/ts/Core/Process/Protocol.d.ts +141 -0
- package/dist/ts/ts/Core/Process/Protocol.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Protocol.js +54 -0
- package/dist/ts/ts/Core/Process/ProtocolParameter.d.ts +32 -0
- package/dist/ts/ts/Core/Process/ProtocolParameter.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/ProtocolParameter.js +69 -0
- package/dist/ts/ts/Core/Process/Sample.d.ts +31 -0
- package/dist/ts/ts/Core/Process/Sample.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Sample.js +44 -0
- package/dist/ts/ts/Core/Process/Source.d.ts +24 -0
- package/dist/ts/ts/Core/Process/Source.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Source.js +38 -0
- package/dist/ts/ts/Core/Publication.d.ts +36 -0
- package/dist/ts/ts/Core/Publication.d.ts.map +1 -0
- package/dist/ts/ts/Core/Publication.js +108 -0
- package/dist/ts/ts/Core/Table/ArcTable.d.ts +137 -0
- package/dist/ts/ts/Core/Table/ArcTable.d.ts.map +1 -0
- package/dist/ts/ts/Core/Table/ArcTable.js +889 -0
- package/dist/ts/ts/Core/Table/ArcTableAux.d.ts +154 -0
- package/dist/ts/ts/Core/Table/ArcTableAux.d.ts.map +1 -0
- package/dist/ts/ts/Core/Table/ArcTableAux.js +993 -0
- package/dist/ts/ts/Core/Table/ArcTables.d.ts +91 -0
- package/dist/ts/ts/Core/Table/ArcTables.d.ts.map +1 -0
- package/dist/ts/ts/Core/Table/ArcTables.js +415 -0
- package/dist/ts/ts/Core/Table/CompositeCell.d.ts +58 -0
- package/dist/ts/ts/Core/Table/CompositeCell.d.ts.map +1 -0
- package/dist/ts/ts/Core/Table/CompositeCell.js +334 -0
- package/dist/ts/ts/Core/Table/CompositeColumn.d.ts +19 -0
- package/dist/ts/ts/Core/Table/CompositeColumn.d.ts.map +1 -0
- package/dist/ts/ts/Core/Table/CompositeColumn.js +52 -0
- package/dist/ts/ts/Core/Table/CompositeHeader.d.ts +130 -0
- package/dist/ts/ts/Core/Table/CompositeHeader.d.ts.map +1 -0
- package/dist/ts/ts/Core/Table/CompositeHeader.js +792 -0
- package/dist/ts/ts/Core/Template.d.ts +69 -0
- package/dist/ts/ts/Core/Template.d.ts.map +1 -0
- package/dist/ts/ts/Core/Template.js +180 -0
- package/dist/ts/ts/Core/Templates.d.ts +18 -0
- package/dist/ts/ts/Core/Templates.d.ts.map +1 -0
- package/dist/ts/ts/Core/Templates.js +75 -0
- package/dist/ts/ts/Core/URI.d.ts.map +1 -0
- package/dist/ts/ts/Core/URI.js +8 -0
- package/dist/ts/ts/Core/Value.d.ts +41 -0
- package/dist/ts/ts/Core/Value.d.ts.map +1 -0
- package/dist/ts/ts/Core/Value.js +194 -0
- package/dist/ts/ts/CrossAsync.d.ts +9 -0
- package/dist/ts/ts/CrossAsync.d.ts.map +1 -0
- package/dist/ts/ts/CrossAsync.js +20 -0
- package/dist/ts/ts/FileSystem/Commit.d.ts +13 -0
- package/dist/ts/ts/FileSystem/Commit.d.ts.map +1 -0
- package/dist/ts/ts/FileSystem/DefaultGitattributes.d.ts.map +1 -0
- package/dist/ts/ts/FileSystem/DefaultGitattributes.js +3 -0
- package/dist/ts/ts/FileSystem/DefaultGitignore.d.ts.map +1 -0
- package/dist/ts/ts/FileSystem/DefaultGitignore.js +3 -0
- package/dist/ts/ts/FileSystem/FileSystem.d.ts +21 -0
- package/dist/ts/ts/FileSystem/FileSystem.d.ts.map +1 -0
- package/dist/ts/ts/FileSystem/FileSystem.js +48 -0
- package/dist/ts/ts/FileSystem/FileSystemTree.d.ts +55 -0
- package/dist/ts/ts/FileSystem/FileSystemTree.d.ts.map +1 -0
- package/dist/ts/ts/FileSystem/FileSystemTree.js +339 -0
- package/dist/ts/ts/FileSystem/Path.d.ts.map +1 -0
- package/dist/ts/ts/FileSystem/Path.js +36 -0
- package/dist/ts/ts/Json/Assay.d.ts +19 -0
- package/dist/ts/ts/Json/Assay.d.ts.map +1 -0
- package/dist/ts/ts/Json/Assay.js +221 -0
- package/dist/ts/ts/Json/Comment.d.ts +14 -0
- package/dist/ts/ts/Json/Comment.d.ts.map +1 -0
- package/dist/ts/ts/Json/Comment.js +112 -0
- package/dist/ts/ts/Json/Data.d.ts +17 -0
- package/dist/ts/ts/Json/Data.d.ts.map +1 -0
- package/dist/ts/ts/Json/Data.js +138 -0
- package/dist/ts/ts/Json/DataFile.d.ts +7 -0
- package/dist/ts/ts/Json/DataFile.d.ts.map +1 -0
- package/dist/ts/ts/Json/DataFile.js +55 -0
- package/dist/ts/ts/Json/DataMap/DataContext.d.ts +5 -0
- package/dist/ts/ts/Json/DataMap/DataContext.d.ts.map +1 -0
- package/dist/ts/ts/Json/DataMap/DataContext.js +39 -0
- package/dist/ts/ts/Json/DataMap/DataMap.d.ts +11 -0
- package/dist/ts/ts/Json/DataMap/DataMap.d.ts.map +1 -0
- package/dist/ts/ts/Json/DataMap/DataMap.js +27 -0
- package/dist/ts/ts/Json/Decode.d.ts +18 -0
- package/dist/ts/ts/Json/Decode.d.ts.map +1 -0
- package/dist/ts/ts/Json/Decode.js +209 -0
- package/dist/ts/ts/Json/Encode.d.ts +23 -0
- package/dist/ts/ts/Json/Encode.d.ts.map +1 -0
- package/dist/ts/ts/Json/Encode.js +65 -0
- package/dist/ts/ts/Json/IDTable.d.ts +5 -0
- package/dist/ts/ts/Json/IDTable.d.ts.map +1 -0
- package/dist/ts/ts/Json/IDTable.js +28 -0
- package/dist/ts/ts/Json/Investigation.d.ts +20 -0
- package/dist/ts/ts/Json/Investigation.d.ts.map +1 -0
- package/dist/ts/ts/Json/Investigation.js +229 -0
- package/dist/ts/ts/Json/OntologyAnnotation.d.ts +18 -0
- package/dist/ts/ts/Json/OntologyAnnotation.d.ts.map +1 -0
- package/dist/ts/ts/Json/OntologyAnnotation.js +194 -0
- package/dist/ts/ts/Json/OntologySourceReference.d.ts +12 -0
- package/dist/ts/ts/Json/OntologySourceReference.d.ts.map +1 -0
- package/dist/ts/ts/Json/OntologySourceReference.js +119 -0
- package/dist/ts/ts/Json/Person.d.ts +22 -0
- package/dist/ts/ts/Json/Person.d.ts.map +1 -0
- package/dist/ts/ts/Json/Person.js +316 -0
- package/dist/ts/ts/Json/Process/AssayMaterials.d.ts +7 -0
- package/dist/ts/ts/Json/Process/AssayMaterials.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/AssayMaterials.js +21 -0
- package/dist/ts/ts/Json/Process/Component.d.ts +11 -0
- package/dist/ts/ts/Json/Process/Component.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/Component.js +41 -0
- package/dist/ts/ts/Json/Process/Factor.d.ts +8 -0
- package/dist/ts/ts/Json/Process/Factor.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/Factor.js +53 -0
- package/dist/ts/ts/Json/Process/FactorValue.d.ts +11 -0
- package/dist/ts/ts/Json/Process/FactorValue.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/FactorValue.js +44 -0
- package/dist/ts/ts/Json/Process/Material.d.ts +12 -0
- package/dist/ts/ts/Json/Process/Material.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/Material.js +112 -0
- package/dist/ts/ts/Json/Process/MaterialAttribute.d.ts +8 -0
- package/dist/ts/ts/Json/Process/MaterialAttribute.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/MaterialAttribute.js +43 -0
- package/dist/ts/ts/Json/Process/MaterialAttributeValue.d.ts +11 -0
- package/dist/ts/ts/Json/Process/MaterialAttributeValue.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/MaterialAttributeValue.js +44 -0
- package/dist/ts/ts/Json/Process/MaterialType.d.ts +7 -0
- package/dist/ts/ts/Json/Process/MaterialType.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/MaterialType.js +45 -0
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- package/dist/ts/ts/Json/Process/Process.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/Process.js +103 -0
- package/dist/ts/ts/Json/Process/ProcessInput.d.ts +9 -0
- package/dist/ts/ts/Json/Process/ProcessInput.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/ProcessInput.js +42 -0
- package/dist/ts/ts/Json/Process/ProcessOutput.d.ts +9 -0
- package/dist/ts/ts/Json/Process/ProcessOutput.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/ProcessOutput.js +35 -0
- package/dist/ts/ts/Json/Process/ProcessParameterValue.d.ts +11 -0
- package/dist/ts/ts/Json/Process/ProcessParameterValue.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/ProcessParameterValue.js +28 -0
- package/dist/ts/ts/Json/Process/Protocol.d.ts +10 -0
- package/dist/ts/ts/Json/Process/Protocol.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/Protocol.js +166 -0
- package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts +8 -0
- package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/ProtocolParameter.js +43 -0
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- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/FsExtensions.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Json.fs.d.ts +0 -15
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Json.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Table.fs.d.ts +0 -6
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Table.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Workbook.fs.d.ts +0 -5
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Workbook.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Worksheet.fs.d.ts +0 -7
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Worksheet.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Xlsx.fs.d.ts +0 -20
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Xlsx.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.d.ts +0 -105
- package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.d.ts +0 -26
- package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Types.fs.d.ts +0 -99
- package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Types.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/Thoth.Json.JavaScript.0.3.0/Decode.fs.d.ts +0 -7
- package/dist/ts/types/ts/fable_modules/Thoth.Json.JavaScript.0.3.0/Decode.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/Thoth.Json.JavaScript.0.3.0/Encode.fs.d.ts +0 -5
- package/dist/ts/types/ts/fable_modules/Thoth.Json.JavaScript.0.3.0/Encode.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Decode.fs.d.ts +0 -64
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Decode.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Encode.fs.d.ts +0 -24
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Encode.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Interop/JsInterop.fs.d.ts +0 -3
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Interop/JsInterop.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Persil.fs.d.ts +0 -12
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Persil.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Preprocessing.fs.d.ts +0 -10
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Preprocessing.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Reader.fs.d.ts +0 -6
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Reader.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Regex.fs.d.ts +0 -10
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Regex.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/RegexActivePatterns.fs.d.ts +0 -46
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/RegexActivePatterns.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Writer.fs.d.ts +0 -12
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Writer.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.d.ts +0 -70
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.d.ts.map +0 -1
- /package/dist/ts/{types/ts → ts}/Core/URI.d.ts +0 -0
- /package/dist/ts/{types/ts → ts}/FileSystem/DefaultGitattributes.d.ts +0 -0
- /package/dist/ts/{types/ts → ts}/FileSystem/DefaultGitignore.d.ts +0 -0
- /package/dist/ts/{types/ts → ts}/FileSystem/Path.d.ts +0 -0
- /package/dist/ts/{types/ts → ts}/ROCrate/Helper.d.ts +0 -0
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import { ofArray, unzip, empty, choose } from '../../node_modules/@fable-org/fable-library-js/List.js';
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import { value, defaultArg, unwrap, map as map$1 } from '../../node_modules/@fable-org/fable-library-js/Option.js';
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import { tryInclude, tryIncludeSeq } from './Encode.js';
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import { ISAJson_decoder as ISAJson_decoder$2, decoder as decoder$1, ROCrate_decoder as ROCrate_decoder$2, encoder as encoder$1, ISAJson_encoder as ISAJson_encoder$1, ROCrate_encoder as ROCrate_encoder$1 } from './OntologySourceReference.js';
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import { ISAJson_decoder as ISAJson_decoder$3, decoder as decoder$2, ROCrate_decoder as ROCrate_decoder$3, encoder as encoder$2, ISAJson_encoder as ISAJson_encoder$2, ROCrate_encoder as ROCrate_encoder$2 } from './Publication.js';
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import { ISAJson_decoder as ISAJson_decoder$4, decoder as decoder$3, ROCrate_decoder as ROCrate_decoder$4, encoder as encoder$3, ISAJson_encoder as ISAJson_encoder$3, ROCrate_encoder as ROCrate_encoder$3 } from './Person.js';
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import { decoder as decoder$4, decoderCompressed as decoderCompressed$1, encoder as encoder$4, encoderCompressed as encoderCompressed$1 } from './Assay.js';
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import { ArcInvestigation } from '../Core/ArcTypes.js';
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import { ISAJson_decoder as ISAJson_decoder$1, decoder as decoder$5, decoderCompressed as decoderCompressed$2, ROCrate_decoder as ROCrate_decoder$1, encoder as encoder$5, ISAJson_encoder as ISAJson_encoder$4, ROCrate_encoder as ROCrate_encoder$4, encoderCompressed as encoderCompressed$2 } from './Study.js';
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import { ISAJson_decoder as ISAJson_decoder$5, decoder as decoder$6, ROCrate_decoder as ROCrate_decoder$5, encoder as encoder$6, ISAJson_encoder as ISAJson_encoder$5, ROCrate_encoder as ROCrate_encoder$5 } from './Comment.js';
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import { concat, map } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
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import { string, list, resizeArray, object } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
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import { stringHash } from '../../node_modules/@fable-org/fable-library-js/Util.js';
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import { toString, today } from '../../node_modules/@fable-org/fable-library-js/Date.js';
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import { context_jsonvalue } from './context/rocrate/isa_investigation_context.js';
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import { createMissingIdentifier } from '../Core/Helper/Identifier.js';
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import { distinctBy } from '../../node_modules/@fable-org/fable-library-js/Seq2.js';
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import { Decode_objectNoAdditionalProperties } from './Decode.js';
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function encoder(inv) {
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let value;
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const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["Identifier", (value = inv.Identifier, {
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Encode(helpers) {
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return helpers.encodeString(value);
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}
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})], tryInclude("Title", (value_1) => ({
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Encode(helpers_1) {
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return helpers_1.encodeString(value_1);
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}
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}), inv.Title), tryInclude("Description", (value_3) => ({
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Encode(helpers_2) {
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return helpers_2.encodeString(value_3);
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}
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}), inv.Description), tryInclude("SubmissionDate", (value_5) => ({
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Encode(helpers_3) {
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return helpers_3.encodeString(value_5);
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}
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}), inv.SubmissionDate), tryInclude("PublicReleaseDate", (value_7) => ({
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Encode(helpers_4) {
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return helpers_4.encodeString(value_7);
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}
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}), inv.PublicReleaseDate), tryIncludeSeq("OntologySourceReferences", encoder$1, inv.OntologySourceReferences), tryIncludeSeq("Publications", encoder$2, inv.Publications), tryIncludeSeq("Contacts", encoder$3, inv.Contacts), tryIncludeSeq("Assays", encoder$4, inv.Assays), tryIncludeSeq("Studies", encoder$5, inv.Studies), tryIncludeSeq("RegisteredStudyIdentifiers", (value_9) => ({
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Encode(helpers_5) {
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return helpers_5.encodeString(value_9);
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}
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}), inv.RegisteredStudyIdentifiers), tryIncludeSeq("Comments", encoder$6, inv.Comments)]));
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return {
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Encode(helpers_6) {
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const arg = map((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
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return helpers_6.encodeObject(arg);
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}
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};
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}
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const decoder = object((get$) => {
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let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
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return new ArcInvestigation((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", string))), unwrap((arg_11 = resizeArray(decoder$1), objectArg_5 = get$.Optional, objectArg_5.Field("OntologySourceReferences", arg_11))), unwrap((arg_13 = resizeArray(decoder$2), objectArg_6 = get$.Optional, objectArg_6.Field("Publications", arg_13))), unwrap((arg_15 = resizeArray(decoder$3), objectArg_7 = get$.Optional, objectArg_7.Field("Contacts", arg_15))), unwrap((arg_17 = resizeArray(decoder$4), objectArg_8 = get$.Optional, objectArg_8.Field("Assays", arg_17))), unwrap((arg_19 = resizeArray(decoder$5), objectArg_9 = get$.Optional, objectArg_9.Field("Studies", arg_19))), void 0, void 0, unwrap((arg_21 = resizeArray(string), objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredStudyIdentifiers", arg_21))), unwrap((arg_23 = resizeArray(decoder$6), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
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});
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function encoderCompressed(stringTable, oaTable, cellTable, inv) {
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let value;
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const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["Identifier", (value = inv.Identifier, {
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Encode(helpers) {
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return helpers.encodeString(value);
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}
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})], tryInclude("Title", (value_1) => ({
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Encode(helpers_1) {
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return helpers_1.encodeString(value_1);
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}
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}), inv.Title), tryInclude("Description", (value_3) => ({
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Encode(helpers_2) {
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return helpers_2.encodeString(value_3);
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}
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}), inv.Description), tryInclude("SubmissionDate", (value_5) => ({
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Encode(helpers_3) {
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return helpers_3.encodeString(value_5);
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}
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}), inv.SubmissionDate), tryInclude("PublicReleaseDate", (value_7) => ({
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Encode(helpers_4) {
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return helpers_4.encodeString(value_7);
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}
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}), inv.PublicReleaseDate), tryIncludeSeq("OntologySourceReferences", encoder$1, inv.OntologySourceReferences), tryIncludeSeq("Publications", encoder$2, inv.Publications), tryIncludeSeq("Contacts", encoder$3, inv.Contacts), tryIncludeSeq("Assays", (assay) => encoderCompressed$1(stringTable, oaTable, cellTable, assay), inv.Assays), tryIncludeSeq("Studies", (study) => encoderCompressed$2(stringTable, oaTable, cellTable, study), inv.Studies), tryIncludeSeq("RegisteredStudyIdentifiers", (value_9) => ({
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Encode(helpers_5) {
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return helpers_5.encodeString(value_9);
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}
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}), inv.RegisteredStudyIdentifiers), tryIncludeSeq("Comments", encoder$6, inv.Comments)]));
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return {
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Encode(helpers_6) {
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const arg = map((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
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return helpers_6.encodeObject(arg);
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}
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};
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}
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function decoderCompressed(stringTable, oaTable, cellTable) {
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return object((get$) => {
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let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
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return new ArcInvestigation((objectArg = get$.Required, objectArg.Field("Identifier", string)), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("Title", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("Description", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", string))), unwrap((arg_11 = resizeArray(decoder$1), objectArg_5 = get$.Optional, objectArg_5.Field("OntologySourceReferences", arg_11))), unwrap((arg_13 = resizeArray(decoder$2), objectArg_6 = get$.Optional, objectArg_6.Field("Publications", arg_13))), unwrap((arg_15 = resizeArray(decoder$3), objectArg_7 = get$.Optional, objectArg_7.Field("Contacts", arg_15))), unwrap((arg_17 = resizeArray(decoderCompressed$1(stringTable, oaTable, cellTable)), objectArg_8 = get$.Optional, objectArg_8.Field("Assays", arg_17))), unwrap((arg_19 = resizeArray(decoderCompressed$2(stringTable, oaTable, cellTable)), objectArg_9 = get$.Optional, objectArg_9.Field("Studies", arg_19))), void 0, void 0, unwrap((arg_21 = resizeArray(string), objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredStudyIdentifiers", arg_21))), unwrap((arg_23 = resizeArray(decoder$6), objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23))));
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});
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}
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function ROCrate_genID(i) {
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return "./";
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}
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function ROCrate_encoder(oa) {
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let value, value_3, value_4, value_12, copyOfStruct;
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const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["@id", (value = ROCrate_genID(), {
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Encode(helpers) {
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return helpers.encodeString(value);
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}
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})], ["@type", {
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Encode(helpers_1) {
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return helpers_1.encodeString("Investigation");
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}
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}], ["additionalType", {
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Encode(helpers_2) {
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return helpers_2.encodeString("Investigation");
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}
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}], ["identifier", (value_3 = oa.Identifier, {
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Encode(helpers_3) {
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return helpers_3.encodeString(value_3);
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}
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})], ["filename", (value_4 = ArcInvestigation.FileName, {
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Encode(helpers_4) {
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return helpers_4.encodeString(value_4);
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}
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})], tryInclude("title", (value_5) => ({
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Encode(helpers_5) {
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return helpers_5.encodeString(value_5);
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}
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}), oa.Title), tryInclude("description", (value_7) => ({
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Encode(helpers_6) {
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return helpers_6.encodeString(value_7);
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}
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}), oa.Description), tryInclude("submissionDate", (value_9) => ({
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Encode(helpers_7) {
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return helpers_7.encodeString(value_9);
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}
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}), oa.SubmissionDate), ["publicReleaseDate", (value_12 = defaultArg(oa.PublicReleaseDate, (copyOfStruct = today(), toString(copyOfStruct, "yyyy-MM-dd"))), {
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Encode(helpers_8) {
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return helpers_8.encodeString(value_12);
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}
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})], tryIncludeSeq("ontologySourceReferences", ROCrate_encoder$1, oa.OntologySourceReferences), tryIncludeSeq("publications", ROCrate_encoder$2, oa.Publications), tryIncludeSeq("people", ROCrate_encoder$3, oa.Contacts), tryIncludeSeq("studies", (s) => ROCrate_encoder$4(void 0, s), oa.Studies), tryIncludeSeq("comments", ROCrate_encoder$5, oa.Comments), ["@context", context_jsonvalue]]));
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return {
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Encode(helpers_9) {
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const arg = map((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_9)], values_1);
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return helpers_9.encodeObject(arg);
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}
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};
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}
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const ROCrate_decoder = object((get$) => {
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let arg_3, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9;
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let identifier;
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let matchValue;
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const objectArg = get$.Optional;
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matchValue = objectArg.Field("identifier", string);
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identifier = matchValue == null ? createMissingIdentifier() : value(matchValue);
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const patternInput = unzip(defaultArg((arg_3 = list(ROCrate_decoder$1), objectArg_1 = get$.Optional, objectArg_1.Field("studies", arg_3)), empty()));
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const studiesRaw = patternInput[0];
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let assays;
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const collection = distinctBy((a) => a.Identifier, concat(patternInput[1]), {
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const collection_1 = map((a_1) => a_1.Identifier, studiesRaw);
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studyIdentifiers = Array.from(collection_1);
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return new ArcInvestigation(identifier, unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("title", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("description", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("submissionDate", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("publicReleaseDate", string))), unwrap((arg_13 = resizeArray(ROCrate_decoder$2), objectArg_6 = get$.Optional, objectArg_6.Field("ontologySourceReferences", arg_13))), unwrap((arg_15 = resizeArray(ROCrate_decoder$3), objectArg_7 = get$.Optional, objectArg_7.Field("publications", arg_15))), unwrap((arg_17 = resizeArray(ROCrate_decoder$4), objectArg_8 = get$.Optional, objectArg_8.Field("people", arg_17))), assays, studies, void 0, void 0, studyIdentifiers, unwrap((arg_19 = resizeArray(ROCrate_decoder$5), objectArg_9 = get$.Optional, objectArg_9.Field("comments", arg_19))));
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});
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const ISAJson_allowedFields = ofArray(["@id", "filename", "identifier", "title", "description", "submissionDate", "publicReleaseDate", "ontologySourceReferences", "publications", "people", "studies", "comments", "@type", "@context"]);
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function ISAJson_encoder(idMap, inv) {
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let value, value_1, value_2;
|
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const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["@id", (value = ROCrate_genID(), {
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Encode(helpers) {
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|
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}
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})], ["filename", (value_1 = ArcInvestigation.FileName, {
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Encode(helpers_1) {
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return helpers_1.encodeString(value_1);
|
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}
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})], ["identifier", (value_2 = inv.Identifier, {
|
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return helpers_2.encodeString(value_2);
|
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}
|
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|
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})], tryInclude("title", (value_3) => ({
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|
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|
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return helpers_3.encodeString(value_3);
|
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}
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}), inv.Title), tryInclude("description", (value_5) => ({
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|
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return helpers_4.encodeString(value_5);
|
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|
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}
|
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|
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}), inv.Description), tryInclude("submissionDate", (value_7) => ({
|
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Encode(helpers_5) {
|
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|
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return helpers_5.encodeString(value_7);
|
|
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|
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}
|
|
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|
+
}), inv.SubmissionDate), tryInclude("publicReleaseDate", (value_9) => ({
|
|
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|
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Encode(helpers_6) {
|
|
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|
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return helpers_6.encodeString(value_9);
|
|
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|
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}
|
|
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|
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}), inv.PublicReleaseDate), tryIncludeSeq("ontologySourceReferences", (osr) => ISAJson_encoder$1(idMap, osr), inv.OntologySourceReferences), tryIncludeSeq("publications", (oa) => ISAJson_encoder$2(idMap, oa), inv.Publications), tryIncludeSeq("people", (person) => ISAJson_encoder$3(idMap, person), inv.Contacts), tryIncludeSeq("studies", (s) => ISAJson_encoder$4(idMap, void 0, s), inv.Studies), tryIncludeSeq("comments", (comment) => ISAJson_encoder$5(idMap, comment), inv.Comments)]));
|
|
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|
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return {
|
|
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|
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Encode(helpers_7) {
|
|
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|
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const arg = map((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_7)], values_1);
|
|
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|
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return helpers_7.encodeObject(arg);
|
|
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|
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}
|
|
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|
+
};
|
|
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|
+
}
|
|
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|
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const ISAJson_decoder = Decode_objectNoAdditionalProperties(ISAJson_allowedFields, (get$) => {
|
|
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|
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let arg_3, objectArg_1, objectArg_2, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9;
|
|
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|
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let identifer;
|
|
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|
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let matchValue;
|
|
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|
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const objectArg = get$.Optional;
|
|
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|
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matchValue = objectArg.Field("identifier", string);
|
|
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|
+
identifer = matchValue == null ? createMissingIdentifier() : value(matchValue);
|
|
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|
+
const patternInput = unzip(defaultArg((arg_3 = list(ISAJson_decoder$1), objectArg_1 = get$.Optional, objectArg_1.Field("studies", arg_3)), empty()));
|
|
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|
+
const studiesRaw = patternInput[0];
|
|
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|
+
let assays;
|
|
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|
+
const collection = distinctBy((a) => a.Identifier, concat(patternInput[1]), {
|
|
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|
+
Equals: (x, y) => x === y,
|
|
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|
+
GetHashCode: stringHash
|
|
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|
+
});
|
|
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|
+
assays = Array.from(collection);
|
|
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|
+
const studies = Array.from(studiesRaw);
|
|
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|
+
let studyIdentifiers;
|
|
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|
+
const collection_1 = map((a_1) => a_1.Identifier, studiesRaw);
|
|
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|
+
studyIdentifiers = Array.from(collection_1);
|
|
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|
+
return new ArcInvestigation(identifer, unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("title", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("description", string))), unwrap((objectArg_4 = get$.Optional, objectArg_4.Field("submissionDate", string))), unwrap((objectArg_5 = get$.Optional, objectArg_5.Field("publicReleaseDate", string))), unwrap((arg_13 = resizeArray(ISAJson_decoder$2), objectArg_6 = get$.Optional, objectArg_6.Field("ontologySourceReferences", arg_13))), unwrap((arg_15 = resizeArray(ISAJson_decoder$3), objectArg_7 = get$.Optional, objectArg_7.Field("publications", arg_15))), unwrap((arg_17 = resizeArray(ISAJson_decoder$4), objectArg_8 = get$.Optional, objectArg_8.Field("people", arg_17))), assays, studies, void 0, void 0, studyIdentifiers, unwrap((arg_19 = resizeArray(ISAJson_decoder$5), objectArg_9 = get$.Optional, objectArg_9.Field("comments", arg_19))));
|
|
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|
+
});
|
|
228
|
+
|
|
229
|
+
export { ISAJson_allowedFields, ISAJson_decoder, ISAJson_encoder, ROCrate_decoder, ROCrate_encoder, ROCrate_genID, decoder, decoderCompressed, encoder, encoderCompressed };
|
|
@@ -0,0 +1,18 @@
|
|
|
1
|
+
import { IMap } from '@fable-org/fable-library-js/Util.js';
|
|
2
|
+
import { int32 } from '@fable-org/fable-library-js/Int32.js';
|
|
3
|
+
import { IEncodable, Decoder$1 } from '../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
|
|
4
|
+
import { Option } from '@fable-org/fable-library-js/Option.js';
|
|
5
|
+
import { OntologyAnnotation } from '../Core/OntologyAnnotation.js';
|
|
6
|
+
export declare const AnnotationValue_decoder: Decoder$1<string>;
|
|
7
|
+
export declare function OntologyAnnotation_encoder(oa: OntologyAnnotation): IEncodable;
|
|
8
|
+
export declare const OntologyAnnotation_decoder: Decoder$1<OntologyAnnotation>;
|
|
9
|
+
export declare function OntologyAnnotation_compressedEncoder(stringTable: IMap<string, int32>, oa: OntologyAnnotation): IEncodable;
|
|
10
|
+
export declare function OntologyAnnotation_compressedDecoder(stringTable: string[]): Decoder$1<OntologyAnnotation>;
|
|
11
|
+
export declare function OntologyAnnotation_ROCrate_genID(o: OntologyAnnotation): string;
|
|
12
|
+
export declare function OntologyAnnotation_ROCrate_encoderDefinedTerm(oa: OntologyAnnotation): IEncodable;
|
|
13
|
+
export declare const OntologyAnnotation_ROCrate_decoderDefinedTerm: Decoder$1<OntologyAnnotation>;
|
|
14
|
+
export declare function OntologyAnnotation_ROCrate_encoderPropertyValue(oa: OntologyAnnotation): IEncodable;
|
|
15
|
+
export declare const OntologyAnnotation_ROCrate_decoderPropertyValue: Decoder$1<OntologyAnnotation>;
|
|
16
|
+
export declare function OntologyAnnotation_ISAJson_encoder(idMap: Option<IMap<string, IEncodable>>, oa: OntologyAnnotation): IEncodable;
|
|
17
|
+
export declare const OntologyAnnotation_ISAJson_decoder: Decoder$1<OntologyAnnotation>;
|
|
18
|
+
//# sourceMappingURL=OntologyAnnotation.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"OntologyAnnotation.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Json/OntologyAnnotation.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,IAAI,EAAiB,MAAM,qCAAqC,CAAC;AAC1E,OAAO,EAAW,KAAK,EAAE,MAAM,sCAAsC,CAAC;AAEtE,OAAO,EAAqB,UAAU,EAAE,SAAS,EAAE,MAAM,oDAAoD,CAAC;AAC9G,OAAO,EAA4B,MAAM,EAAgB,MAAM,uCAAuC,CAAC;AAKvG,OAAO,EAAE,kBAAkB,EAAE,MAAM,+BAA+B,CAAC;AASnE,eAAO,MAAM,uBAAuB,EAAE,SAAS,CAAC,MAAM,CAA2J,CAAC;AAElN,wBAAgB,0BAA0B,CAAC,EAAE,EAAE,kBAAkB,GAAG,UAAU,CAoB7E;AAED,eAAO,MAAM,0BAA0B,EAAE,SAAS,CAAC,kBAAkB,CAGnE,CAAC;AAEH,wBAAgB,oCAAoC,CAAC,WAAW,EAAE,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,EAAE,EAAE,kBAAkB,GAAG,UAAU,CAQzH;AAED,wBAAgB,oCAAoC,CAAC,WAAW,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC,kBAAkB,CAAC,CAKzG;AAED,wBAAgB,gCAAgC,CAAC,CAAC,EAAE,kBAAkB,GAAG,MAAM,CAoB9E;AAED,wBAAgB,6CAA6C,CAAC,EAAE,EAAE,kBAAkB,GAAG,UAAU,CA6BhG;AAED,eAAO,MAAM,6CAA6C,EAAE,SAAS,CAAC,kBAAkB,CAGtF,CAAC;AAEH,wBAAgB,+CAA+C,CAAC,EAAE,EAAE,kBAAkB,GAAG,UAAU,CAyBlG;AAED,eAAO,MAAM,+CAA+C,EAAE,SAAS,CAAC,kBAAkB,CAGxF,CAAC;AAEH,wBAAgB,kCAAkC,CAAC,KAAK,EAAE,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,EAAE,EAAE,EAAE,kBAAkB,GAAG,UAAU,CAsD9H;AAED,eAAO,MAAM,kCAAkC,EAAE,SAAS,CAAC,kBAAkB,CAA8B,CAAC"}
|
|
@@ -0,0 +1,194 @@
|
|
|
1
|
+
import { oneOf, map, string, int, float, object, resizeArray } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
|
|
2
|
+
import { int32ToString } from '../../node_modules/@fable-org/fable-library-js/Util.js';
|
|
3
|
+
import { ofArray, choose } from '../../node_modules/@fable-org/fable-library-js/List.js';
|
|
4
|
+
import { unwrap, map as map$1, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
|
|
5
|
+
import { tryInclude, tryIncludeSeq } from './Encode.js';
|
|
6
|
+
import { decoder, ROCrate_decoderDisambiguatingDescription, encoder, ROCrate_encoderDisambiguatingDescription } from './Comment.js';
|
|
7
|
+
import { map as map$2, filter } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
|
|
8
|
+
import { OntologyAnnotation } from '../Core/OntologyAnnotation.js';
|
|
9
|
+
import { decodeString, encodeString } from './StringTable.js';
|
|
10
|
+
import { replace } from '../../node_modules/@fable-org/fable-library-js/String.js';
|
|
11
|
+
import { URIModule_toString } from '../Core/URI.js';
|
|
12
|
+
import { context_jsonvalue } from './context/rocrate/isa_ontology_annotation_context.js';
|
|
13
|
+
import { context_jsonvalue as context_jsonvalue$1 } from './context/rocrate/property_value_context.js';
|
|
14
|
+
import { orderName } from '../Core/Process/ColumnIndex.js';
|
|
15
|
+
import { encode } from './IDTable.js';
|
|
16
|
+
|
|
17
|
+
const AnnotationValue_decoder = oneOf(ofArray([map(int32ToString, int), map((value_1) => value_1.toString(), float), string]));
|
|
18
|
+
function OntologyAnnotation_encoder(oa) {
|
|
19
|
+
const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("annotationValue", (value) => ({
|
|
20
|
+
Encode(helpers) {
|
|
21
|
+
return helpers.encodeString(value);
|
|
22
|
+
}
|
|
23
|
+
}), oa.Name), tryInclude("termSource", (value_2) => ({
|
|
24
|
+
Encode(helpers_1) {
|
|
25
|
+
return helpers_1.encodeString(value_2);
|
|
26
|
+
}
|
|
27
|
+
}), oa.TermSourceREF), tryInclude("termAccession", (value_4) => ({
|
|
28
|
+
Encode(helpers_2) {
|
|
29
|
+
return helpers_2.encodeString(value_4);
|
|
30
|
+
}
|
|
31
|
+
}), oa.TermAccessionNumber), tryIncludeSeq("comments", encoder, oa.Comments)]));
|
|
32
|
+
return {
|
|
33
|
+
Encode(helpers_3) {
|
|
34
|
+
const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_3)], values_1);
|
|
35
|
+
return helpers_3.encodeObject(arg);
|
|
36
|
+
}
|
|
37
|
+
};
|
|
38
|
+
}
|
|
39
|
+
const OntologyAnnotation_decoder = object((get$) => {
|
|
40
|
+
let objectArg, objectArg_1, objectArg_2, arg_7, objectArg_3;
|
|
41
|
+
return OntologyAnnotation.create(unwrap((objectArg = get$.Optional, objectArg.Field("annotationValue", AnnotationValue_decoder))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("termSource", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("termAccession", string))), unwrap((arg_7 = resizeArray(decoder), objectArg_3 = get$.Optional, objectArg_3.Field("comments", arg_7))));
|
|
42
|
+
});
|
|
43
|
+
function OntologyAnnotation_compressedEncoder(stringTable, oa) {
|
|
44
|
+
const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("a", (s) => encodeString(stringTable, s), oa.Name), tryInclude("ts", (s_1) => encodeString(stringTable, s_1), oa.TermSourceREF), tryInclude("ta", (s_2) => encodeString(stringTable, s_2), oa.TermAccessionNumber), tryIncludeSeq("comments", encoder, oa.Comments)]));
|
|
45
|
+
return {
|
|
46
|
+
Encode(helpers) {
|
|
47
|
+
const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers)], values_1);
|
|
48
|
+
return helpers.encodeObject(arg);
|
|
49
|
+
}
|
|
50
|
+
};
|
|
51
|
+
}
|
|
52
|
+
function OntologyAnnotation_compressedDecoder(stringTable) {
|
|
53
|
+
return object((get$) => {
|
|
54
|
+
let arg_1, objectArg, arg_3, objectArg_1, arg_5, objectArg_2, arg_7, objectArg_3;
|
|
55
|
+
return new OntologyAnnotation(unwrap((arg_1 = decodeString(stringTable), objectArg = get$.Optional, objectArg.Field("a", arg_1))), unwrap((arg_3 = decodeString(stringTable), objectArg_1 = get$.Optional, objectArg_1.Field("ts", arg_3))), unwrap((arg_5 = decodeString(stringTable), objectArg_2 = get$.Optional, objectArg_2.Field("ta", arg_5))), unwrap((arg_7 = resizeArray(decoder), objectArg_3 = get$.Optional, objectArg_3.Field("comments", arg_7))));
|
|
56
|
+
});
|
|
57
|
+
}
|
|
58
|
+
function OntologyAnnotation_ROCrate_genID(o) {
|
|
59
|
+
const matchValue = o.TermAccessionNumber;
|
|
60
|
+
if (matchValue == null) {
|
|
61
|
+
const matchValue_1 = o.TermSourceREF;
|
|
62
|
+
if (matchValue_1 == null) {
|
|
63
|
+
const matchValue_2 = o.Name;
|
|
64
|
+
if (matchValue_2 == null) {
|
|
65
|
+
return "#DummyOntologyAnnotation";
|
|
66
|
+
} else {
|
|
67
|
+
return "#UserTerm_" + replace(value(matchValue_2), " ", "_");
|
|
68
|
+
}
|
|
69
|
+
} else {
|
|
70
|
+
return "#" + replace(value(matchValue_1), " ", "_");
|
|
71
|
+
}
|
|
72
|
+
} else {
|
|
73
|
+
return URIModule_toString(value(matchValue));
|
|
74
|
+
}
|
|
75
|
+
}
|
|
76
|
+
function OntologyAnnotation_ROCrate_encoderDefinedTerm(oa) {
|
|
77
|
+
let value;
|
|
78
|
+
const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["@id", (value = OntologyAnnotation_ROCrate_genID(oa), {
|
|
79
|
+
Encode(helpers) {
|
|
80
|
+
return helpers.encodeString(value);
|
|
81
|
+
}
|
|
82
|
+
})], ["@type", {
|
|
83
|
+
Encode(helpers_1) {
|
|
84
|
+
return helpers_1.encodeString("OntologyAnnotation");
|
|
85
|
+
}
|
|
86
|
+
}], tryInclude("annotationValue", (value_2) => ({
|
|
87
|
+
Encode(helpers_2) {
|
|
88
|
+
return helpers_2.encodeString(value_2);
|
|
89
|
+
}
|
|
90
|
+
}), oa.Name), tryInclude("termSource", (value_4) => ({
|
|
91
|
+
Encode(helpers_3) {
|
|
92
|
+
return helpers_3.encodeString(value_4);
|
|
93
|
+
}
|
|
94
|
+
}), oa.TermSourceREF), tryInclude("termAccession", (value_6) => ({
|
|
95
|
+
Encode(helpers_4) {
|
|
96
|
+
return helpers_4.encodeString(value_6);
|
|
97
|
+
}
|
|
98
|
+
}), oa.TermAccessionNumber), tryIncludeSeq("comments", ROCrate_encoderDisambiguatingDescription, oa.Comments), ["@context", context_jsonvalue]]));
|
|
99
|
+
return {
|
|
100
|
+
Encode(helpers_5) {
|
|
101
|
+
const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_5)], values_1);
|
|
102
|
+
return helpers_5.encodeObject(arg);
|
|
103
|
+
}
|
|
104
|
+
};
|
|
105
|
+
}
|
|
106
|
+
const OntologyAnnotation_ROCrate_decoderDefinedTerm = object((get$) => {
|
|
107
|
+
let objectArg, objectArg_1, objectArg_2, arg_7, objectArg_3;
|
|
108
|
+
return OntologyAnnotation.create(unwrap((objectArg = get$.Optional, objectArg.Field("annotationValue", AnnotationValue_decoder))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("termSource", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("termAccession", string))), unwrap((arg_7 = resizeArray(ROCrate_decoderDisambiguatingDescription), objectArg_3 = get$.Optional, objectArg_3.Field("comments", arg_7))));
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});
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function OntologyAnnotation_ROCrate_encoderPropertyValue(oa) {
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const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["@id", (value = OntologyAnnotation_ROCrate_genID(oa), {
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Encode(helpers) {
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return helpers.encodeString(value);
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}
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})], ["@type", {
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return helpers_1.encodeString("PropertyValue");
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}
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}], tryInclude("category", (value_2) => ({
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return helpers_2.encodeString(value_2);
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}
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}), oa.Name), tryInclude("categoryCode", (value_4) => ({
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}
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}), oa.TermAccessionNumber), tryIncludeSeq("comments", ROCrate_encoderDisambiguatingDescription, oa.Comments), ["@context", context_jsonvalue$1]]));
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const OntologyAnnotation_ROCrate_decoderPropertyValue = object((get$) => {
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let objectArg, objectArg_1, arg_5, objectArg_2;
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return OntologyAnnotation.create(unwrap((objectArg = get$.Optional, objectArg.Field("category", string))), void 0, unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("categoryCode", string))), unwrap((arg_5 = resizeArray(ROCrate_decoderDisambiguatingDescription), objectArg_2 = get$.Optional, objectArg_2.Field("comments", arg_5))));
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});
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function OntologyAnnotation_ISAJson_encoder(idMap, oa) {
|
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const f = (oa_1) => {
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const comments = filter((c) => {
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const matchValue = c.Name;
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let matchResult;
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value(matchValue);
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}
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}
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case 0:
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return false;
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default:
|
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return true;
|
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|
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}
|
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|
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}, oa_1.Comments);
|
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|
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const values_1 = choose((tupledArg) => map$1((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("@id", (value) => ({
|
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|
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|
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return helpers.encodeString(value);
|
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|
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}
|
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|
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}), OntologyAnnotation_ROCrate_genID(oa_1)), tryInclude("annotationValue", (value_2) => ({
|
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|
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Encode(helpers_1) {
|
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|
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return helpers_1.encodeString(value_2);
|
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|
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}
|
|
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|
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}), oa_1.Name), tryInclude("termSource", (value_4) => ({
|
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|
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|
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return helpers_2.encodeString(value_4);
|
|
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|
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}
|
|
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|
+
}), oa_1.TermSourceREF), tryInclude("termAccession", (value_6) => ({
|
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|
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|
|
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|
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return helpers_3.encodeString(value_6);
|
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|
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}
|
|
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|
+
}), oa_1.TermAccessionNumber), tryIncludeSeq("comments", encoder, comments)]));
|
|
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|
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return {
|
|
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|
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Encode(helpers_4) {
|
|
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|
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const arg = map$2((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_4)], values_1);
|
|
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|
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return helpers_4.encodeObject(arg);
|
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|
+
}
|
|
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|
+
};
|
|
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|
+
};
|
|
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|
+
if (idMap != null) {
|
|
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|
+
return encode(OntologyAnnotation_ROCrate_genID, f, oa, value(idMap));
|
|
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|
+
} else {
|
|
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|
+
return f(oa);
|
|
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|
+
}
|
|
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|
+
}
|
|
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|
+
const OntologyAnnotation_ISAJson_decoder = OntologyAnnotation_decoder;
|
|
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|
+
|
|
194
|
+
export { AnnotationValue_decoder, OntologyAnnotation_ISAJson_decoder, OntologyAnnotation_ISAJson_encoder, OntologyAnnotation_ROCrate_decoderDefinedTerm, OntologyAnnotation_ROCrate_decoderPropertyValue, OntologyAnnotation_ROCrate_encoderDefinedTerm, OntologyAnnotation_ROCrate_encoderPropertyValue, OntologyAnnotation_ROCrate_genID, OntologyAnnotation_compressedDecoder, OntologyAnnotation_compressedEncoder, OntologyAnnotation_decoder, OntologyAnnotation_encoder };
|
|
@@ -0,0 +1,12 @@
|
|
|
1
|
+
import { Option } from '@fable-org/fable-library-js/Option.js';
|
|
2
|
+
import { Decoder$1, IEncodable } from '../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
|
|
3
|
+
import { OntologySourceReference } from '../Core/OntologySourceReference.js';
|
|
4
|
+
import { IMap } from '@fable-org/fable-library-js/Util.js';
|
|
5
|
+
export declare function encoder(osr: OntologySourceReference): IEncodable;
|
|
6
|
+
export declare const decoder: Decoder$1<OntologySourceReference>;
|
|
7
|
+
export declare function ROCrate_genID(o: OntologySourceReference): string;
|
|
8
|
+
export declare function ROCrate_encoder(osr: OntologySourceReference): IEncodable;
|
|
9
|
+
export declare const ROCrate_decoder: Decoder$1<OntologySourceReference>;
|
|
10
|
+
export declare function ISAJson_encoder(idMap: Option<IMap<string, IEncodable>>, osr: OntologySourceReference): IEncodable;
|
|
11
|
+
export declare const ISAJson_decoder: Decoder$1<OntologySourceReference>;
|
|
12
|
+
//# sourceMappingURL=OntologySourceReference.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"OntologySourceReference.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Json/OntologySourceReference.ts"],"names":[],"mappings":"AACA,OAAO,EAA6B,MAAM,EAAO,MAAM,uCAAuC,CAAC;AAC/F,OAAO,EAAE,SAAS,EAAqB,UAAU,EAAE,MAAM,oDAAoD,CAAC;AAK9G,OAAO,EAAE,uBAAuB,EAAE,MAAM,oCAAoC,CAAC;AAK7E,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAE3D,wBAAgB,OAAO,CAAC,GAAG,EAAE,uBAAuB,GAAG,UAAU,CAwBhE;AAED,eAAO,MAAM,OAAO,EAAE,SAAS,CAAC,uBAAuB,CAGrD,CAAC;AAEH,wBAAgB,aAAa,CAAC,CAAC,EAAE,uBAAuB,GAAG,MAAM,CAchE;AAED,wBAAgB,eAAe,CAAC,GAAG,EAAE,uBAAuB,GAAG,UAAU,CAiCxE;AAED,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,uBAAuB,CAG7D,CAAC;AAEH,wBAAgB,eAAe,CAAC,KAAK,EAAE,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,EAAE,GAAG,EAAE,uBAAuB,GAAG,UAAU,CAwBjH;AAED,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,uBAAuB,CAAW,CAAC"}
|
|
@@ -0,0 +1,119 @@
|
|
|
1
|
+
import { choose, ofArray } from '../../node_modules/@fable-org/fable-library-js/List.js';
|
|
2
|
+
import { unwrap, map, value } from '../../node_modules/@fable-org/fable-library-js/Option.js';
|
|
3
|
+
import { tryInclude, tryIncludeSeq } from './Encode.js';
|
|
4
|
+
import { decoder as decoder$1, encoder as encoder$1, ISAJson_encoder as ISAJson_encoder$1 } from './Comment.js';
|
|
5
|
+
import { map as map$1 } from '../../node_modules/@fable-org/fable-library-js/Seq.js';
|
|
6
|
+
import { OntologySourceReference } from '../Core/OntologySourceReference.js';
|
|
7
|
+
import { object, string, resizeArray } from '../fable_modules/Thoth.Json.Core.0.7.0/Decode.fs.js';
|
|
8
|
+
import { Decode_uri } from './Decode.js';
|
|
9
|
+
import { replace } from '../../node_modules/@fable-org/fable-library-js/String.js';
|
|
10
|
+
import { context_jsonvalue } from './context/rocrate/isa_ontology_source_reference_context.js';
|
|
11
|
+
|
|
12
|
+
function encoder(osr) {
|
|
13
|
+
const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("description", (value) => ({
|
|
14
|
+
Encode(helpers) {
|
|
15
|
+
return helpers.encodeString(value);
|
|
16
|
+
}
|
|
17
|
+
}), osr.Description), tryInclude("file", (value_2) => ({
|
|
18
|
+
Encode(helpers_1) {
|
|
19
|
+
return helpers_1.encodeString(value_2);
|
|
20
|
+
}
|
|
21
|
+
}), osr.File), tryInclude("name", (value_4) => ({
|
|
22
|
+
Encode(helpers_2) {
|
|
23
|
+
return helpers_2.encodeString(value_4);
|
|
24
|
+
}
|
|
25
|
+
}), osr.Name), tryInclude("version", (value_6) => ({
|
|
26
|
+
Encode(helpers_3) {
|
|
27
|
+
return helpers_3.encodeString(value_6);
|
|
28
|
+
}
|
|
29
|
+
}), osr.Version), tryIncludeSeq("comments", encoder$1, osr.Comments)]));
|
|
30
|
+
return {
|
|
31
|
+
Encode(helpers_4) {
|
|
32
|
+
const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_4)], values_1);
|
|
33
|
+
return helpers_4.encodeObject(arg);
|
|
34
|
+
}
|
|
35
|
+
};
|
|
36
|
+
}
|
|
37
|
+
const decoder = object((get$) => {
|
|
38
|
+
let objectArg, objectArg_1, objectArg_2, objectArg_3, arg_9, objectArg_4;
|
|
39
|
+
return new OntologySourceReference(unwrap((objectArg = get$.Optional, objectArg.Field("description", Decode_uri))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("file", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("name", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("version", string))), unwrap((arg_9 = resizeArray(decoder$1), objectArg_4 = get$.Optional, objectArg_4.Field("comments", arg_9))));
|
|
40
|
+
});
|
|
41
|
+
function ROCrate_genID(o) {
|
|
42
|
+
const matchValue = o.File;
|
|
43
|
+
if (matchValue == null) {
|
|
44
|
+
const matchValue_1 = o.Name;
|
|
45
|
+
if (matchValue_1 == null) {
|
|
46
|
+
return "#DummyOntologySourceRef";
|
|
47
|
+
} else {
|
|
48
|
+
return "#OntologySourceRef_" + replace(value(matchValue_1), " ", "_");
|
|
49
|
+
}
|
|
50
|
+
} else {
|
|
51
|
+
return value(matchValue);
|
|
52
|
+
}
|
|
53
|
+
}
|
|
54
|
+
function ROCrate_encoder(osr) {
|
|
55
|
+
let value;
|
|
56
|
+
const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([["@id", (value = ROCrate_genID(osr), {
|
|
57
|
+
Encode(helpers) {
|
|
58
|
+
return helpers.encodeString(value);
|
|
59
|
+
}
|
|
60
|
+
})], ["@type", {
|
|
61
|
+
Encode(helpers_1) {
|
|
62
|
+
return helpers_1.encodeString("OntologySourceReference");
|
|
63
|
+
}
|
|
64
|
+
}], tryInclude("description", (value_2) => ({
|
|
65
|
+
Encode(helpers_2) {
|
|
66
|
+
return helpers_2.encodeString(value_2);
|
|
67
|
+
}
|
|
68
|
+
}), osr.Description), tryInclude("file", (value_4) => ({
|
|
69
|
+
Encode(helpers_3) {
|
|
70
|
+
return helpers_3.encodeString(value_4);
|
|
71
|
+
}
|
|
72
|
+
}), osr.File), tryInclude("name", (value_6) => ({
|
|
73
|
+
Encode(helpers_4) {
|
|
74
|
+
return helpers_4.encodeString(value_6);
|
|
75
|
+
}
|
|
76
|
+
}), osr.Name), tryInclude("version", (value_8) => ({
|
|
77
|
+
Encode(helpers_5) {
|
|
78
|
+
return helpers_5.encodeString(value_8);
|
|
79
|
+
}
|
|
80
|
+
}), osr.Version), tryIncludeSeq("comments", encoder$1, osr.Comments), ["@context", context_jsonvalue]]));
|
|
81
|
+
return {
|
|
82
|
+
Encode(helpers_6) {
|
|
83
|
+
const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
|
|
84
|
+
return helpers_6.encodeObject(arg);
|
|
85
|
+
}
|
|
86
|
+
};
|
|
87
|
+
}
|
|
88
|
+
const ROCrate_decoder = object((get$) => {
|
|
89
|
+
let objectArg, objectArg_1, objectArg_2, objectArg_3, arg_9, objectArg_4;
|
|
90
|
+
return new OntologySourceReference(unwrap((objectArg = get$.Optional, objectArg.Field("description", Decode_uri))), unwrap((objectArg_1 = get$.Optional, objectArg_1.Field("file", string))), unwrap((objectArg_2 = get$.Optional, objectArg_2.Field("name", string))), unwrap((objectArg_3 = get$.Optional, objectArg_3.Field("version", string))), unwrap((arg_9 = resizeArray(decoder$1), objectArg_4 = get$.Optional, objectArg_4.Field("comments", arg_9))));
|
|
91
|
+
});
|
|
92
|
+
function ISAJson_encoder(idMap, osr) {
|
|
93
|
+
const values_1 = choose((tupledArg) => map((v_1) => [tupledArg[0], v_1], tupledArg[1]), ofArray([tryInclude("description", (value) => ({
|
|
94
|
+
Encode(helpers) {
|
|
95
|
+
return helpers.encodeString(value);
|
|
96
|
+
}
|
|
97
|
+
}), osr.Description), tryInclude("file", (value_2) => ({
|
|
98
|
+
Encode(helpers_1) {
|
|
99
|
+
return helpers_1.encodeString(value_2);
|
|
100
|
+
}
|
|
101
|
+
}), osr.File), tryInclude("name", (value_4) => ({
|
|
102
|
+
Encode(helpers_2) {
|
|
103
|
+
return helpers_2.encodeString(value_4);
|
|
104
|
+
}
|
|
105
|
+
}), osr.Name), tryInclude("version", (value_6) => ({
|
|
106
|
+
Encode(helpers_3) {
|
|
107
|
+
return helpers_3.encodeString(value_6);
|
|
108
|
+
}
|
|
109
|
+
}), osr.Version), tryIncludeSeq("comments", (comment) => ISAJson_encoder$1(idMap, comment), osr.Comments)]));
|
|
110
|
+
return {
|
|
111
|
+
Encode(helpers_4) {
|
|
112
|
+
const arg = map$1((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_4)], values_1);
|
|
113
|
+
return helpers_4.encodeObject(arg);
|
|
114
|
+
}
|
|
115
|
+
};
|
|
116
|
+
}
|
|
117
|
+
const ISAJson_decoder = decoder;
|
|
118
|
+
|
|
119
|
+
export { ISAJson_decoder, ISAJson_encoder, ROCrate_decoder, ROCrate_encoder, ROCrate_genID, decoder, encoder };
|
|
@@ -0,0 +1,22 @@
|
|
|
1
|
+
import { FSharpList } from '@fable-org/fable-library-js/List.js';
|
|
2
|
+
import { Option } from '@fable-org/fable-library-js/Option.js';
|
|
3
|
+
import { Decoder$1, IEncodable } from '../fable_modules/Thoth.Json.Core.0.7.0/Types.fs.js';
|
|
4
|
+
import { Person } from '../Core/Person.js';
|
|
5
|
+
import { IMap } from '@fable-org/fable-library-js/Util.js';
|
|
6
|
+
export declare function encoder(person: Person): IEncodable;
|
|
7
|
+
export declare const decoder: Decoder$1<Person>;
|
|
8
|
+
export declare function ROCrate_genID(p: Person): string;
|
|
9
|
+
export declare function ROCrate_Affiliation_encoder(affiliation: string): IEncodable;
|
|
10
|
+
export declare const ROCrate_Affiliation_decoder: Decoder$1<string>;
|
|
11
|
+
export declare function ROCrate_encoder(oa: Person): IEncodable;
|
|
12
|
+
export declare const ROCrate_decoder: Decoder$1<Person>;
|
|
13
|
+
/**
|
|
14
|
+
* This is only used for ro-crate creation. In ISA publication authors are only a string. ro-crate requires person object.
|
|
15
|
+
* Therefore, we try to split the string by common separators and create a minimal person object for ro-crate.
|
|
16
|
+
*/
|
|
17
|
+
export declare function ROCrate_encodeAuthorListString(authorList: string): IEncodable;
|
|
18
|
+
export declare const ROCrate_decodeAuthorListString: Decoder$1<string>;
|
|
19
|
+
export declare const ISAJson_allowedFields: FSharpList<string>;
|
|
20
|
+
export declare function ISAJson_encoder(idMap: Option<IMap<string, IEncodable>>, person: Person): IEncodable;
|
|
21
|
+
export declare const ISAJson_decoder: Decoder$1<Person>;
|
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22
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+
//# sourceMappingURL=Person.d.ts.map
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@@ -0,0 +1 @@
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1
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+
{"version":3,"file":"Person.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Json/Person.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAmB,MAAM,qCAAqC,CAAC;AAClF,OAAO,EAAyC,MAAM,EAAO,MAAM,uCAAuC,CAAC;AAC3G,OAAO,EAAE,SAAS,EAAqB,UAAU,EAAE,MAAM,oDAAoD,CAAC;AAO9G,OAAO,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAS3C,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAG3D,wBAAgB,OAAO,CAAC,MAAM,EAAE,MAAM,GAAG,UAAU,CA4ClD;AAED,eAAO,MAAM,OAAO,EAAE,SAAS,CAAC,MAAM,CAGpC,CAAC;AAEH,wBAAgB,aAAa,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CA2F/C;AAED,wBAAgB,2BAA2B,CAAC,WAAW,EAAE,MAAM,GAAG,UAAU,CAsB3E;AAED,eAAO,MAAM,2BAA2B,EAAE,SAAS,CAAC,MAAM,CAGxD,CAAC;AAEH,wBAAgB,eAAe,CAAC,EAAE,EAAE,MAAM,GAAG,UAAU,CAiDtD;AAED,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,MAAM,CAG5C,CAAC;AAEH;;;GAGG;AACH,wBAAgB,8BAA8B,CAAC,UAAU,EAAE,MAAM,GAAG,UAAU,CAwB7E;AAED,eAAO,MAAM,8BAA8B,EAAE,SAAS,CAAC,MAAM,CAGzD,CAAC;AAEL,eAAO,MAAM,qBAAqB,EAAE,UAAU,CAAC,MAAM,CAAyJ,CAAC;AAE/M,wBAAgB,eAAe,CAAC,KAAK,EAAE,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC,EAAE,MAAM,EAAE,MAAM,GAAG,UAAU,CAqDnG;AAED,eAAO,MAAM,eAAe,EAAE,SAAS,CAAC,MAAM,CAG5C,CAAC"}
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