@nfdi4plants/arctrl 3.0.0-beta.2 → 3.0.0-beta.4

package/dist/ts/ts/Core/Helper/ORCID.d.ts

@@ -0,0 +1,7 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+export declare const orcidRegex: RegExp;
+export declare function tryGetOrcidNumber(orcid: string): Option<string>;
+export declare const orcidPrefix = "http://orcid.org/";
+export declare function $007CORCID$007C_$007C(input: string): Option<string>;
+export declare function tryGetOrcidURL(orcid: string): Option<string>;
+//# sourceMappingURL=ORCID.d.ts.map

package/dist/ts/ts/Core/Helper/ORCID.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ORCID.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Core/Helper/ORCID.ts"],"names":[],"mappings":"AACA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAGtE,eAAO,MAAM,UAAU,QAAgD,CAAC;AAExE,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,CAQ/D;AAED,eAAO,MAAM,WAAW,sBAAsB,CAAC;AAE/C,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,CASnE;AAED,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,CAS5D"}

package/dist/ts/ts/Core/Helper/ORCID.js

@@ -0,0 +1,34 @@
+import { match } from '../../../node_modules/@fable-org/fable-library-js/RegExp.js';
+import { value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { ActivePatterns_$007CRegex$007C_$007C } from './Regex.js';
+
+const orcidRegex = /[0-9]{4}-[0-9]{4}-[0-9]{4}-[0-9]{3}[0-9X]/gu;
+function tryGetOrcidNumber(orcid) {
+  const m = match(orcidRegex, orcid);
+  if (m != null) {
+    return m[0];
+  } else {
+    return void 0;
+  }
+}
+const orcidPrefix = "http://orcid.org/";
+function $007CORCID$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("[0-9]{4}-[0-9]{4}-[0-9]{4}-[0-9]{3}[0-9X]", input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r[0];
+  } else {
+    return void 0;
+  }
+}
+function tryGetOrcidURL(orcid) {
+  const activePatternResult = $007CORCID$007C_$007C(orcid);
+  if (activePatternResult != null) {
+    const orcid_1 = value(activePatternResult);
+    return `${orcidPrefix}${orcid_1}`;
+  } else {
+    return void 0;
+  }
+}
+
+export { $007CORCID$007C_$007C, orcidPrefix, orcidRegex, tryGetOrcidNumber, tryGetOrcidURL };

package/dist/ts/ts/Core/Helper/Regex.d.ts

@@ -0,0 +1,194 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+export declare function Pattern_handleGroupPatterns(pattern: string): string;
+export declare const Pattern_ExcelNumberFormat = "\"(?<numberFormat>(.*?))\"";
+export declare const Pattern_TermAnnotationShortPattern = "(?<idspace>\\w+?):(?<localid>\\w+)";
+export declare const Pattern_TermAnnotationURIPattern = "http://purl.obolibrary.org/obo/(?<idspace>\\w+?)_(?<localid>\\w+)";
+export declare const Pattern_TermAnnotationURIPattern_lessRestrictive = ".*\\/(?<idspace>\\w+?)[:_](?<localid>\\w+)";
+export declare const Pattern_TermAnnotationURIPattern_MS_RO_PO = ".*252F(?<idspace>\\w+?)_(?<localid>\\w+)";
+export declare const Pattern_IOTypePattern = "(Input|Output)\\s*\\[(?<iotype>.+)\\]";
+export declare const Pattern_InputPattern = "Input\\s*\\[(?<iotype>.+)\\]";
+export declare const Pattern_OutputPattern = "Output\\s*\\[(?<iotype>.+)\\]";
+export declare const Pattern_CommentPattern = "Comment\\s*\\[(?<commentKey>.+)\\]";
+/**
+ * Matches, if the input string matches the given regex pattern.
+ */
+export declare function ActivePatterns_$007CRegex$007C_$007C(pattern: string, input: string): Option<any>;
+/**
+ * Matches any column header starting with some text, followed by one whitespace and a term name inside squared brackets.
+ */
+export declare function ActivePatterns_$007CReferenceColumnHeader$007C_$007C(input: string): Option<{
+    Annotation: string;
+}>;
+/**
+ * Matches any column header starting with some text, followed by one whitespace and a term name inside squared brackets.
+ */
+export declare function ActivePatterns_$007CTermColumn$007C_$007C(input: string): Option<{
+    TermColumnType: string;
+    TermName: string;
+}>;
+/**
+ * Matches a "Unit" column header.
+ */
+export declare function ActivePatterns_$007CUnitColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches a "Parameter [Term]" or "Parameter Value [Term]" column header and returns the Term string.
+ */
+export declare function ActivePatterns_$007CParameterColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches a "Factor [Term]" or "Factor Value [Term]" column header and returns the Term string.
+ */
+export declare function ActivePatterns_$007CFactorColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches a "Characteristic [Term]" or "Characteristics [Term]" or "Characteristics Value [Term]" column header and returns the Term string.
+ */
+export declare function ActivePatterns_$007CCharacteristicColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches a "Component [Term]" or "Component Value [Term]" column header and returns the Term string.
+ */
+export declare function ActivePatterns_$007CComponentColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches a short term string and returns the term source ref and the annotation number strings.
+ *
+ * Example: "MS:1003022" --> term source ref: "MS"; annotation number: "1003022"
+ */
+export declare function ActivePatterns_$007CTermAnnotationShort$007C_$007C(input: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Matches a term string (either short or URI) and returns the term source ref and the annotation number strings.
+ *
+ * Example 1: "MS:1003022" --> term source ref: "MS"; annotation number: "1003022"
+ *
+ * Example 2: "http://purl.obolibrary.org/obo/MS_1003022" --> term source ref: "MS"; annotation number: "1003022"
+ */
+export declare function ActivePatterns_$007CTermAnnotation$007C_$007C(input: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Matches a "Term Source REF (ShortTerm)" column header and returns the ShortTerm as Term Source Ref and Annotation Number.
+ *
+ * Example: "Term Source REF (MS:1003022)" --> term source ref: "MS"; annotation number: "1003022"
+ */
+export declare function ActivePatterns_$007CTSRColumnHeader$007C_$007C(input: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Matches a "Term Accession Number (ShortTerm)" column header and returns the ShortTerm as Term Source Ref and Annotation Number.
+ *
+ * Example: "Term Accession Number (MS:1003022)" --> term source ref: "MS"; annotation number: "1003022"
+ */
+export declare function ActivePatterns_$007CTANColumnHeader$007C_$007C(input: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Matches a "Input [InputType]" column header and returns the InputType as string.
+ */
+export declare function ActivePatterns_$007CInputColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches a "Output [OutputType]" column header and returns the OutputType as string.
+ */
+export declare function ActivePatterns_$007COutputColumnHeader$007C_$007C(input: string): Option<string>;
+/**
+ * Matches auto-generated readable table names. Mainly used in ArcAssay.addTable(). Default tables will get such a name.
+ *
+ * Will match "New Table 10" and return the number `10`.
+ */
+export declare function ActivePatterns_$007CAutoGeneratedTableName$007C_$007C(input: string): Option<int32>;
+export declare function ActivePatterns_$007CComment$007C_$007C(input: string): Option<string>;
+export declare function tryParseReferenceColumnHeader(str: string): Option<{
+    Annotation: string;
+}>;
+export declare function tryParseTermAnnotationShort(str: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * This function can be used to extract `IDSPACE:LOCALID` (or: `Term Accession`) from Swate header strings or obofoundry conform URI strings.
+ *
+ * **Example 1:** "http://purl.obolibrary.org/obo/GO_000001" --> "GO:000001"
+ *
+ * **Example 2:** "Term Source REF (NFDI4PSO:0000064)" --> "NFDI4PSO:0000064"
+ */
+export declare function tryParseTermAnnotation(str: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Tries to parse 'str' to term accession and returns it in the format `Some "termsourceref:localtan"`. Exmp.: `Some "MS:000001"`
+ */
+export declare function tryGetTermAnnotationShortString(str: string): Option<string>;
+/**
+ * Parses 'str' to term accession and returns it in the format "termsourceref:localtan". Exmp.: "MS:000001"
+ */
+export declare function getTermAnnotationShortString(str: string): string;
+/**
+ * This function is used to parse Excel numberFormat string to term name.
+ *
+ * **Example 1:** "0.00 "degree Celsius"" --> "degree Celsius"
+ */
+export declare function tryParseExcelNumberFormat(headerStr: string): Option<string>;
+/**
+ * This function is used to match both Input and Output columns and capture the IOType as `iotype` group.
+ *
+ * **Example 1:** "Input [Sample]" --> "Sample"
+ */
+export declare function tryParseIOTypeHeader(headerStr: string): Option<string>;
+/**
+ * Matches any column header starting with some text, followed by one whitespace and a term name inside squared brackets.
+ */
+export declare function tryParseTermColumn(input: string): Option<{
+    TermColumnType: string;
+    TermName: string;
+}>;
+/**
+ * Matches a "Unit" column header.
+ */
+export declare function tryParseUnitColumnHeader(input: string): Option<string>;
+/**
+ * Matches a "Parameter [Term]" or "Parameter Value [Term]" column header and returns the Term string.
+ */
+export declare function tryParseParameterColumnHeader(input: string): Option<string>;
+/**
+ * Matches a "Factor [Term]" or "Factor Value [Term]" column header and returns the Term string.
+ */
+export declare function tryParseFactorColumnHeader(input: string): Option<string>;
+/**
+ * Matches a "Characteristic [Term]" or "Characteristics [Term]" or "Characteristics Value [Term]" column header and returns the Term string.
+ */
+export declare function tryParseCharacteristicColumnHeader(input: string): Option<string>;
+/**
+ * Matches a "Component [Term]" or "Characteristics [Term]" or "Component Value [Term]" column header and returns the Term string.
+ */
+export declare function tryParseComponentColumnHeader(input: string): Option<string>;
+/**
+ * Matches a "Term Source REF (ShortTerm)" column header and returns the ShortTerm as Term Source Ref and Annotation Number.
+ *
+ * Example: "Term Source REF (MS:1003022)" --> term source ref: "MS"; annotation number: "1003022"
+ */
+export declare function tryParseTSRColumnHeader(input: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Matches a "Term Accession Number (ShortTerm)" column header and returns the ShortTerm as Term Source Ref and Annotation Number.
+ *
+ * Example: "Term Accession Number (MS:1003022)" --> term source ref: "MS"; annotation number: "1003022"
+ */
+export declare function tryParseTANColumnHeader(input: string): Option<{
+    IDSpace: string;
+    LocalID: string;
+}>;
+/**
+ * Matches a "Input [InputType]" column header and returns the InputType as string.
+ */
+export declare function tryParseInputColumnHeader(input: string): Option<string>;
+/**
+ * Matches a "Output [OutputType]" column header and returns the OutputType as string.
+ */
+export declare function tryParseOutputColumnHeader(input: string): Option<string>;
+//# sourceMappingURL=Regex.d.ts.map

package/dist/ts/ts/Core/Helper/Regex.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/ts/Core/Helper/Regex.js

@@ -0,0 +1,296 @@
+import { match, create } from '../../../node_modules/@fable-org/fable-library-js/RegExp.js';
+import { value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+
+function Pattern_handleGroupPatterns(pattern) {
+  return pattern;
+}
+const Pattern_TermAnnotationShortPattern = `(?<${"idspace"}>\\w+?):(?<${"localid"}>\\w+)`;
+const Pattern_TermAnnotationURIPattern = `http://purl.obolibrary.org/obo/(?<${"idspace"}>\\w+?)_(?<${"localid"}>\\w+)`;
+const Pattern_TermAnnotationURIPattern_lessRestrictive = `.*\\/(?<${"idspace"}>\\w+?)[:_](?<${"localid"}>\\w+)`;
+const Pattern_TermAnnotationURIPattern_MS_RO_PO = `.*252F(?<${"idspace"}>\\w+?)_(?<${"localid"}>\\w+)`;
+const Pattern_IOTypePattern = `(Input|Output)\\s*\\[(?<${"iotype"}>.+)\\]`;
+const Pattern_InputPattern = `Input\\s*\\[(?<${"iotype"}>.+)\\]`;
+const Pattern_OutputPattern = `Output\\s*\\[(?<${"iotype"}>.+)\\]`;
+const Pattern_CommentPattern = `Comment\\s*\\[(?<${"commentKey"}>.+)\\]`;
+function ActivePatterns_$007CRegex$007C_$007C(pattern, input) {
+  const m = match(create(Pattern_handleGroupPatterns(pattern)), input.trim());
+  if (m != null) {
+    return m;
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CTermColumn$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("(?<termcolumntype>.+?)\\s*\\[(?<termname>.+)\\]", input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return {
+      TermColumnType: r.groups && r.groups.termcolumntype || "",
+      TermName: r.groups && r.groups.termname || ""
+    };
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CUnitColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("Unit", input);
+  if (activePatternResult != null) {
+    const o = value(activePatternResult);
+    return o[0];
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CParameterColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    const matchValue = r.TermColumnType;
+    switch (matchValue) {
+      case "Parameter":
+      case "Parameter Value":
+        return r.TermName;
+      default:
+        return void 0;
+    }
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CFactorColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    const matchValue = r.TermColumnType;
+    switch (matchValue) {
+      case "Factor":
+      case "Factor Value":
+        return r.TermName;
+      default:
+        return void 0;
+    }
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CCharacteristicColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    const matchValue = r.TermColumnType;
+    switch (matchValue) {
+      case "Characteristic":
+      case "Characteristics":
+      case "Characteristics Value":
+        return r.TermName;
+      default:
+        return void 0;
+    }
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CComponentColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    const matchValue = r.TermColumnType;
+    switch (matchValue) {
+      case "Component":
+      case "Component Value":
+        return r.TermName;
+      default:
+        return void 0;
+    }
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CTermAnnotation$007C_$007C(input) {
+  let matchResult, value$1;
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationShortPattern, input);
+  if (activePatternResult != null) {
+    matchResult = 0;
+    value$1 = value(activePatternResult);
+  } else {
+    const activePatternResult_1 = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationURIPattern, input);
+    if (activePatternResult_1 != null) {
+      matchResult = 0;
+      value$1 = value(activePatternResult_1);
+    } else {
+      const activePatternResult_2 = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationURIPattern_lessRestrictive, input);
+      if (activePatternResult_2 != null) {
+        matchResult = 0;
+        value$1 = value(activePatternResult_2);
+      } else {
+        const activePatternResult_3 = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationURIPattern_MS_RO_PO, input);
+        if (activePatternResult_3 != null) {
+          matchResult = 0;
+          value$1 = value(activePatternResult_3);
+        } else {
+          matchResult = 1;
+        }
+      }
+    }
+  }
+  switch (matchResult) {
+    case 0:
+      return {
+        IDSpace: value$1.groups && value$1.groups.idspace || "",
+        LocalID: value$1.groups && value$1.groups.localid || ""
+      };
+    default:
+      return void 0;
+  }
+}
+function ActivePatterns_$007CTSRColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("Term Source REF\\s*\\((?<id>.*)\\)", input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    const matchValue = r.groups && r.groups.id || "";
+    const activePatternResult_1 = ActivePatterns_$007CTermAnnotation$007C_$007C(matchValue);
+    if (activePatternResult_1 != null) {
+      const r_1 = value(activePatternResult_1);
+      return r_1;
+    } else {
+      return {
+        IDSpace: "",
+        LocalID: ""
+      };
+    }
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CTANColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("Term Accession Number\\s*\\((?<id>.*)\\)", input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    const matchValue = r.groups && r.groups.id || "";
+    const activePatternResult_1 = ActivePatterns_$007CTermAnnotation$007C_$007C(matchValue);
+    if (activePatternResult_1 != null) {
+      const r_1 = value(activePatternResult_1);
+      return r_1;
+    } else {
+      return {
+        IDSpace: "",
+        LocalID: ""
+      };
+    }
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CInputColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_InputPattern, input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r.groups && r.groups.iotype || "";
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007COutputColumnHeader$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_OutputPattern, input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r.groups && r.groups.iotype || "";
+  } else {
+    return void 0;
+  }
+}
+function ActivePatterns_$007CComment$007C_$007C(input) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_CommentPattern, input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r.groups && r.groups.commentKey || "";
+  } else {
+    return void 0;
+  }
+}
+function tryParseTermAnnotation(str) {
+  const matchValue = str.trim();
+  let matchResult, value$1;
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationShortPattern, matchValue);
+  if (activePatternResult != null) {
+    matchResult = 0;
+    value$1 = value(activePatternResult);
+  } else {
+    const activePatternResult_1 = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationURIPattern, matchValue);
+    if (activePatternResult_1 != null) {
+      matchResult = 0;
+      value$1 = value(activePatternResult_1);
+    } else {
+      const activePatternResult_2 = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationURIPattern_lessRestrictive, matchValue);
+      if (activePatternResult_2 != null) {
+        matchResult = 0;
+        value$1 = value(activePatternResult_2);
+      } else {
+        const activePatternResult_3 = ActivePatterns_$007CRegex$007C_$007C(Pattern_TermAnnotationURIPattern_MS_RO_PO, matchValue);
+        if (activePatternResult_3 != null) {
+          matchResult = 0;
+          value$1 = value(activePatternResult_3);
+        } else {
+          matchResult = 1;
+        }
+      }
+    }
+  }
+  switch (matchResult) {
+    case 0:
+      return {
+        IDSpace: value$1.groups && value$1.groups.idspace || "",
+        LocalID: value$1.groups && value$1.groups.localid || ""
+      };
+    default:
+      return void 0;
+  }
+}
+function tryParseIOTypeHeader(headerStr) {
+  const matchValue = headerStr.trim();
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(Pattern_IOTypePattern, matchValue);
+  if (activePatternResult != null) {
+    const value$1 = value(activePatternResult);
+    return value$1.groups && value$1.groups.iotype || "";
+  } else {
+    return void 0;
+  }
+}
+function tryParseParameterColumnHeader(input) {
+  const activePatternResult = ActivePatterns_$007CParameterColumnHeader$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function tryParseFactorColumnHeader(input) {
+  const activePatternResult = ActivePatterns_$007CFactorColumnHeader$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function tryParseCharacteristicColumnHeader(input) {
+  const activePatternResult = ActivePatterns_$007CCharacteristicColumnHeader$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+function tryParseComponentColumnHeader(input) {
+  const activePatternResult = ActivePatterns_$007CComponentColumnHeader$007C_$007C(input);
+  if (activePatternResult != null) {
+    const r = value(activePatternResult);
+    return r;
+  } else {
+    return void 0;
+  }
+}
+
+export { ActivePatterns_$007CCharacteristicColumnHeader$007C_$007C, ActivePatterns_$007CComment$007C_$007C, ActivePatterns_$007CComponentColumnHeader$007C_$007C, ActivePatterns_$007CFactorColumnHeader$007C_$007C, ActivePatterns_$007CInputColumnHeader$007C_$007C, ActivePatterns_$007COutputColumnHeader$007C_$007C, ActivePatterns_$007CParameterColumnHeader$007C_$007C, ActivePatterns_$007CRegex$007C_$007C, ActivePatterns_$007CTANColumnHeader$007C_$007C, ActivePatterns_$007CTSRColumnHeader$007C_$007C, ActivePatterns_$007CTermAnnotation$007C_$007C, ActivePatterns_$007CTermColumn$007C_$007C, ActivePatterns_$007CUnitColumnHeader$007C_$007C, Pattern_CommentPattern, Pattern_IOTypePattern, Pattern_InputPattern, Pattern_OutputPattern, Pattern_TermAnnotationShortPattern, Pattern_TermAnnotationURIPattern, Pattern_TermAnnotationURIPattern_MS_RO_PO, Pattern_TermAnnotationURIPattern_lessRestrictive, Pattern_handleGroupPatterns, tryParseCharacteristicColumnHeader, tryParseComponentColumnHeader, tryParseFactorColumnHeader, tryParseIOTypeHeader, tryParseParameterColumnHeader, tryParseTermAnnotation };

package/dist/ts/ts/Core/Helper/SemVer.d.ts

@@ -0,0 +1,20 @@
+import { Record } from '@fable-org/fable-library-js/Types.js';
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { IComparable, IEquatable } from '@fable-org/fable-library-js/Util.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+export declare const SemVerAux_Pattern = "^(?<major>\\d+)(\\.(?<minor>\\d+))?(\\.(?<patch>\\d+))?(-(?<pre>[0-9A-Za-z-\\.]+))?(\\+(?<build>[0-9A-Za-z-\\.]+))?$";
+export declare class SemVer extends Record implements IEquatable<SemVer>, IComparable<SemVer> {
+    readonly Major: int32;
+    readonly Minor: int32;
+    readonly Patch: int32;
+    readonly PreRelease: Option<string>;
+    readonly Metadata: Option<string>;
+    constructor(Major: int32, Minor: int32, Patch: int32, PreRelease: Option<string>, Metadata: Option<string>);
+}
+export declare function SemVer_$reflection(): TypeInfo;
+export declare function SemVer_make(major: int32, minor: int32, patch: int32, pre: Option<string>, meta: Option<string>): SemVer;
+export declare function SemVer_create_Z55658624(major: int32, minor: int32, patch: int32, pre?: string, meta?: string): SemVer;
+export declare function SemVer_tryOfString_Z721C83C5(str: string): Option<SemVer>;
+export declare function SemVer__AsString(this$: SemVer): string;
+//# sourceMappingURL=SemVer.d.ts.map

package/dist/ts/ts/Core/Helper/SemVer.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"SemVer.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Core/Helper/SemVer.ts"],"names":[],"mappings":"AAAA,OAAO,EAAY,MAAM,EAAE,MAAM,sCAAsC,CAAC;AACxE,OAAO,EAAS,KAAK,EAAE,MAAM,sCAAsC,CAAC;AACpE,OAAO,EAA4B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACzF,OAAO,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAC9E,OAAO,EAAqD,QAAQ,EAAE,MAAM,2CAA2C,CAAC;AAKxH,eAAO,MAAM,iBAAiB,yHAAyH,CAAC;AAExJ,qBAAa,MAAO,SAAQ,MAAO,YAAW,UAAU,CAAC,MAAM,CAAC,EAAE,WAAW,CAAC,MAAM,CAAC;IACjF,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,KAAK,EAAE,KAAK,CAAC;IACtB,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;IACpC,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;gBACtB,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC;CAQ7G;AAED,wBAAgB,kBAAkB,IAAI,QAAQ,CAE7C;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,EAAE,MAAM,CAAC,MAAM,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,GAAG,MAAM,CAEvH;AAED,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,MAAM,CAErH;AAED,wBAAgB,4BAA4B,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,CAUxE;AAED,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAWtD"}

package/dist/ts/ts/Core/Helper/SemVer.js

@@ -0,0 +1,31 @@
+import { Record } from '../../../node_modules/@fable-org/fable-library-js/Types.js';
+import { parse } from '../../../node_modules/@fable-org/fable-library-js/Int32.js';
+import { value, unwrap } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+import { ActivePatterns_$007CRegex$007C_$007C } from './Regex.js';
+
+const SemVerAux_Pattern = "^(?<major>\\d+)(\\.(?<minor>\\d+))?(\\.(?<patch>\\d+))?(-(?<pre>[0-9A-Za-z-\\.]+))?(\\+(?<build>[0-9A-Za-z-\\.]+))?$";
+class SemVer extends Record {
+  constructor(Major, Minor, Patch, PreRelease, Metadata) {
+    super();
+    this.Major = Major | 0;
+    this.Minor = Minor | 0;
+    this.Patch = Patch | 0;
+    this.PreRelease = PreRelease;
+    this.Metadata = Metadata;
+  }
+}
+function SemVer_create_Z55658624(major, minor, patch, pre, meta) {
+  return new SemVer(major, minor, patch, pre, meta);
+}
+function SemVer_tryOfString_Z721C83C5(str) {
+  const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(SemVerAux_Pattern, str);
+  if (activePatternResult != null) {
+    const m = value(activePatternResult);
+    const g = m;
+    return SemVer_create_Z55658624(parse(g.groups && g.groups.major || "", 511, false, 32), parse(g.groups && g.groups.minor || "", 511, false, 32), parse(g.groups && g.groups.patch || "", 511, false, 32), unwrap((g.groups && g.groups.pre) != null ? g.groups && g.groups.pre || "" : void 0), unwrap((g.groups && g.groups.build) != null ? g.groups && g.groups.build || "" : void 0));
+  } else {
+    return void 0;
+  }
+}
+
+export { SemVer, SemVerAux_Pattern, SemVer_create_Z55658624, SemVer_tryOfString_Z721C83C5 };

package/dist/ts/ts/Core/Helper/Url.d.ts

@@ -0,0 +1,10 @@
+import { IMap } from '@fable-org/fable-library-js/Util.js';
+export declare function OntobeeParser(tsr: string, localTan: string): string;
+export declare function BioregistryParser(tsr: string, localTan: string): string;
+export declare function OntobeeDPBOParser(tsr: string, localTan: string): string;
+export declare function MSParser(tsr: string, localTan: string): string;
+export declare function POParser(tsr: string, localTan: string): string;
+export declare function ROParser(tsr: string, localTan: string): string;
+export declare const uriParserCollection: IMap<string, ((arg0: string) => ((arg0: string) => string))>;
+export declare function createOAUri(tsr: string, localTan: string): string;
+//# sourceMappingURL=Url.d.ts.map

package/dist/ts/ts/Core/Helper/Url.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"Url.d.ts","sourceRoot":"","sources":["../../../../../src/ARCtrl/ts/Core/Helper/Url.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,IAAI,EAAE,MAAM,qCAAqC,CAAC;AAG3D,wBAAgB,aAAa,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAEnE;AAED,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAEvE;AAED,wBAAgB,iBAAiB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAEvE;AAED,wBAAgB,QAAQ,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED,wBAAgB,QAAQ,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED,wBAAgB,QAAQ,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED,eAAO,MAAM,mBAAmB,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,CAAC,CAAC,IAAI,EAAE,MAAM,KAAK,MAAM,CAAC,CAAC,CAAo0F,CAAC;AAEl6F,wBAAgB,WAAW,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,CAQjE"}

package/dist/ts/ts/Core/Helper/Url.js

@@ -0,0 +1,32 @@
+import { Dictionary_ofSeq, Dictionary_tryFind } from './Collections.js';
+import { value } from '../../../node_modules/@fable-org/fable-library-js/Option.js';
+
+function OntobeeParser(tsr, localTan) {
+  return `${"http://purl.obolibrary.org/obo/"}${tsr}_${localTan}`;
+}
+function BioregistryParser(tsr, localTan) {
+  return `${"https://bioregistry.io/"}${tsr}:${localTan}`;
+}
+function OntobeeDPBOParser(tsr, localTan) {
+  return `${"http://purl.org/nfdi4plants/ontology/dpbo/"}${tsr}_${localTan}`;
+}
+function MSParser(tsr, localTan) {
+  return `${"https://www.ebi.ac.uk/ols4/ontologies/ms/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252F"}${tsr}_${localTan}`;
+}
+function POParser(tsr, localTan) {
+  return `${"https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252F"}${tsr}_${localTan}`;
+}
+function ROParser(tsr, localTan) {
+  return `${"https://www.ebi.ac.uk/ols4/ontologies/ro/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252F"}${tsr}_${localTan}`;
+}
+const uriParserCollection = Dictionary_ofSeq([["DPBO", (tsr) => (localTan) => OntobeeDPBOParser(tsr, localTan)], ["MS", (tsr_1) => (localTan_1) => MSParser(tsr_1, localTan_1)], ["PO", (tsr_2) => (localTan_2) => POParser(tsr_2, localTan_2)], ["RO", (tsr_3) => (localTan_3) => ROParser(tsr_3, localTan_3)], ["ENVO", (tsr_4) => (localTan_4) => BioregistryParser(tsr_4, localTan_4)], ["CHEBI", (tsr_5) => (localTan_5) => BioregistryParser(tsr_5, localTan_5)], ["GO", (tsr_6) => (localTan_6) => BioregistryParser(tsr_6, localTan_6)], ["OBI", (tsr_7) => (localTan_7) => BioregistryParser(tsr_7, localTan_7)], ["PATO", (tsr_8) => (localTan_8) => BioregistryParser(tsr_8, localTan_8)], ["PECO", (tsr_9) => (localTan_9) => BioregistryParser(tsr_9, localTan_9)], ["TO", (tsr_10) => (localTan_10) => BioregistryParser(tsr_10, localTan_10)], ["UO", (tsr_11) => (localTan_11) => BioregistryParser(tsr_11, localTan_11)], ["EFO", (tsr_12) => (localTan_12) => BioregistryParser(tsr_12, localTan_12)], ["NCIT", (tsr_13) => (localTan_13) => BioregistryParser(tsr_13, localTan_13)], ["OMP", (tsr_14) => (localTan_14) => BioregistryParser(tsr_14, localTan_14)]]);
+function createOAUri(tsr, localTan) {
+  const matchValue = Dictionary_tryFind(tsr, uriParserCollection);
+  if (matchValue == null) {
+    return OntobeeParser(tsr, localTan);
+  } else {
+    return value(matchValue)(tsr)(localTan);
+  }
+}
+
+export { BioregistryParser, MSParser, OntobeeDPBOParser, OntobeeParser, POParser, ROParser, createOAUri, uriParserCollection };

package/dist/ts/ts/Core/IdentifierSetters.d.ts

@@ -0,0 +1,7 @@
+import { ArcTable } from './Table/ArcTable.js';
+import { ArcInvestigation, ArcStudy, ArcAssay } from './ArcTypes.js';
+export declare function setArcTableName(newName: string, table: ArcTable): ArcTable;
+export declare function setAssayIdentifier(newIdentifier: string, assay: ArcAssay): ArcAssay;
+export declare function setStudyIdentifier(newIdentifier: string, study: ArcStudy): ArcStudy;
+export declare function setInvestigationIdentifier(newIdentifier: string, investigation: ArcInvestigation): ArcInvestigation;
+//# sourceMappingURL=IdentifierSetters.d.ts.map