@nfdi4plants/arctrl 3.0.0-beta.2 → 3.0.0-beta.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1439) hide show
  1. package/dist/ts/__vite-browser-external-2447137e.js +4 -0
  2. package/dist/ts/__vite-browser-external-b3701507.cjs +1 -0
  3. package/dist/ts/arctrl.cjs.js +5691 -0
  4. package/dist/ts/arctrl.es.js +35562 -0
  5. package/dist/ts/arctrl.umd.js +5691 -0
  6. package/dist/ts/index.d.ts +61 -0
  7. package/dist/ts/index.d.ts.map +1 -0
  8. package/dist/ts/ts/ARC.d.ts +80 -0
  9. package/dist/ts/ts/ARC.d.ts.map +1 -0
  10. package/dist/ts/ts/Contract/ARC.d.ts +7 -0
  11. package/dist/ts/ts/Contract/ARC.d.ts.map +1 -0
  12. package/dist/ts/ts/Contract/ArcAssay.d.ts +12 -0
  13. package/dist/ts/ts/Contract/ArcAssay.d.ts.map +1 -0
  14. package/dist/ts/ts/Contract/ArcInvestigation.d.ts +10 -0
  15. package/dist/ts/ts/Contract/ArcInvestigation.d.ts.map +1 -0
  16. package/dist/ts/ts/Contract/ArcRun.d.ts +12 -0
  17. package/dist/ts/ts/Contract/ArcRun.d.ts.map +1 -0
  18. package/dist/ts/ts/Contract/ArcStudy.d.ts +13 -0
  19. package/dist/ts/ts/Contract/ArcStudy.d.ts.map +1 -0
  20. package/dist/ts/ts/Contract/ArcWorkflow.d.ts +12 -0
  21. package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map +1 -0
  22. package/dist/ts/ts/Contract/Contract.d.ts +39 -0
  23. package/dist/ts/ts/Contract/Contract.d.ts.map +1 -0
  24. package/dist/ts/ts/Contract/Datamap.d.ts +29 -0
  25. package/dist/ts/ts/Contract/Datamap.d.ts.map +1 -0
  26. package/dist/ts/ts/Contract/Git.d.ts +28 -0
  27. package/dist/ts/ts/Contract/Git.d.ts.map +1 -0
  28. package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts +12 -0
  29. package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts.map +1 -0
  30. package/dist/ts/ts/ContractIO/ContractIO.d.ts +11 -0
  31. package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -0
  32. package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts +44 -0
  33. package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts.map +1 -0
  34. package/dist/ts/ts/Conversion.d.ts +292 -0
  35. package/dist/ts/ts/Conversion.d.ts.map +1 -0
  36. package/dist/ts/ts/Core/ArcTypes.d.ts +620 -0
  37. package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -0
  38. package/dist/ts/ts/Core/Comment.d.ts +35 -0
  39. package/dist/ts/ts/Core/Comment.d.ts.map +1 -0
  40. package/dist/ts/ts/Core/CommentList.d.ts +28 -0
  41. package/dist/ts/ts/Core/CommentList.d.ts.map +1 -0
  42. package/dist/ts/ts/Core/Conversion.d.ts +215 -0
  43. package/dist/ts/ts/Core/Conversion.d.ts.map +1 -0
  44. package/dist/ts/ts/Core/Data.d.ts +49 -0
  45. package/dist/ts/ts/Core/Data.d.ts.map +1 -0
  46. package/dist/ts/ts/Core/DataContext.d.ts +47 -0
  47. package/dist/ts/ts/Core/DataContext.d.ts.map +1 -0
  48. package/dist/ts/ts/Core/DataFile.d.ts +27 -0
  49. package/dist/ts/ts/Core/DataFile.d.ts.map +1 -0
  50. package/dist/ts/ts/Core/DataMap.d.ts +52 -0
  51. package/dist/ts/ts/Core/DataMap.d.ts.map +1 -0
  52. package/dist/ts/ts/Core/Helper/Collections.d.ts +61 -0
  53. package/dist/ts/ts/Core/Helper/Collections.d.ts.map +1 -0
  54. package/dist/ts/ts/Core/Helper/HashCodes.d.ts +9 -0
  55. package/dist/ts/ts/Core/Helper/HashCodes.d.ts.map +1 -0
  56. package/dist/ts/ts/Core/Helper/Identifier.d.ts +119 -0
  57. package/dist/ts/ts/Core/Helper/Identifier.d.ts.map +1 -0
  58. package/dist/ts/ts/Core/Helper/ORCID.d.ts +7 -0
  59. package/dist/ts/ts/Core/Helper/ORCID.d.ts.map +1 -0
  60. package/dist/ts/ts/Core/Helper/Regex.d.ts +194 -0
  61. package/dist/ts/ts/Core/Helper/Regex.d.ts.map +1 -0
  62. package/dist/ts/ts/Core/Helper/SemVer.d.ts +20 -0
  63. package/dist/ts/ts/Core/Helper/SemVer.d.ts.map +1 -0
  64. package/dist/ts/ts/Core/Helper/Url.d.ts +10 -0
  65. package/dist/ts/ts/Core/Helper/Url.d.ts.map +1 -0
  66. package/dist/ts/ts/Core/IdentifierSetters.d.ts +7 -0
  67. package/dist/ts/ts/Core/IdentifierSetters.d.ts.map +1 -0
  68. package/dist/ts/ts/Core/OntologyAnnotation.d.ts +57 -0
  69. package/dist/ts/ts/Core/OntologyAnnotation.d.ts.map +1 -0
  70. package/dist/ts/ts/Core/OntologySourceReference.d.ts +31 -0
  71. package/dist/ts/ts/Core/OntologySourceReference.d.ts.map +1 -0
  72. package/dist/ts/ts/Core/Person.d.ts +56 -0
  73. package/dist/ts/ts/Core/Person.d.ts.map +1 -0
  74. package/dist/ts/ts/Core/Process/ColumnIndex.d.ts +79 -0
  75. package/dist/ts/ts/Core/Process/ColumnIndex.d.ts.map +1 -0
  76. package/dist/ts/ts/Core/Process/Component.d.ts +65 -0
  77. package/dist/ts/ts/Core/Process/Component.d.ts.map +1 -0
  78. package/dist/ts/ts/Core/Process/Factor.d.ts +44 -0
  79. package/dist/ts/ts/Core/Process/Factor.d.ts.map +1 -0
  80. package/dist/ts/ts/Core/Process/FactorValue.d.ts +44 -0
  81. package/dist/ts/ts/Core/Process/FactorValue.d.ts.map +1 -0
  82. package/dist/ts/ts/Core/Process/Material.d.ts +27 -0
  83. package/dist/ts/ts/Core/Process/Material.d.ts.map +1 -0
  84. package/dist/ts/ts/Core/Process/MaterialAttribute.d.ts +53 -0
  85. package/dist/ts/ts/Core/Process/MaterialAttribute.d.ts.map +1 -0
  86. package/dist/ts/ts/Core/Process/MaterialAttributeValue.d.ts +55 -0
  87. package/dist/ts/ts/Core/Process/MaterialAttributeValue.d.ts.map +1 -0
  88. package/dist/ts/ts/Core/Process/MaterialType.d.ts +22 -0
  89. package/dist/ts/ts/Core/Process/MaterialType.d.ts.map +1 -0
  90. package/dist/ts/ts/Core/Process/Process.d.ts +113 -0
  91. package/dist/ts/ts/Core/Process/Process.d.ts.map +1 -0
  92. package/dist/ts/ts/Core/Process/ProcessInput.d.ts +117 -0
  93. package/dist/ts/ts/Core/Process/ProcessInput.d.ts.map +1 -0
  94. package/dist/ts/ts/Core/Process/ProcessOutput.d.ts +106 -0
  95. package/dist/ts/ts/Core/Process/ProcessOutput.d.ts.map +1 -0
  96. package/dist/ts/ts/Core/Process/ProcessParameterValue.d.ts +40 -0
  97. package/dist/ts/ts/Core/Process/ProcessParameterValue.d.ts.map +1 -0
  98. package/dist/ts/ts/Core/Process/ProcessSequence.d.ts +89 -0
  99. package/dist/ts/ts/Core/Process/ProcessSequence.d.ts.map +1 -0
  100. package/dist/ts/ts/Core/Process/Protocol.d.ts +141 -0
  101. package/dist/ts/ts/Core/Process/Protocol.d.ts.map +1 -0
  102. package/dist/ts/ts/Core/Process/ProtocolParameter.d.ts +32 -0
  103. package/dist/ts/ts/Core/Process/ProtocolParameter.d.ts.map +1 -0
  104. package/dist/ts/ts/Core/Process/Sample.d.ts +31 -0
  105. package/dist/ts/ts/Core/Process/Sample.d.ts.map +1 -0
  106. package/dist/ts/ts/Core/Process/Source.d.ts +24 -0
  107. package/dist/ts/ts/Core/Process/Source.d.ts.map +1 -0
  108. package/dist/ts/ts/Core/Publication.d.ts +36 -0
  109. package/dist/ts/ts/Core/Publication.d.ts.map +1 -0
  110. package/dist/ts/ts/Core/Table/ArcTable.d.ts +137 -0
  111. package/dist/ts/ts/Core/Table/ArcTable.d.ts.map +1 -0
  112. package/dist/ts/ts/Core/Table/ArcTableAux.d.ts +154 -0
  113. package/dist/ts/ts/Core/Table/ArcTableAux.d.ts.map +1 -0
  114. package/dist/ts/ts/Core/Table/ArcTables.d.ts +91 -0
  115. package/dist/ts/ts/Core/Table/ArcTables.d.ts.map +1 -0
  116. package/dist/ts/ts/Core/Table/CompositeCell.d.ts +58 -0
  117. package/dist/ts/ts/Core/Table/CompositeCell.d.ts.map +1 -0
  118. package/dist/ts/ts/Core/Table/CompositeColumn.d.ts +19 -0
  119. package/dist/ts/ts/Core/Table/CompositeColumn.d.ts.map +1 -0
  120. package/dist/ts/ts/Core/Table/CompositeHeader.d.ts +130 -0
  121. package/dist/ts/ts/Core/Table/CompositeHeader.d.ts.map +1 -0
  122. package/dist/ts/ts/Core/Template.d.ts +69 -0
  123. package/dist/ts/ts/Core/Template.d.ts.map +1 -0
  124. package/dist/ts/ts/Core/Templates.d.ts +18 -0
  125. package/dist/ts/ts/Core/Templates.d.ts.map +1 -0
  126. package/dist/ts/ts/Core/URI.d.ts.map +1 -0
  127. package/dist/ts/ts/Core/Value.d.ts +41 -0
  128. package/dist/ts/ts/Core/Value.d.ts.map +1 -0
  129. package/dist/ts/ts/CrossAsync.d.ts +9 -0
  130. package/dist/ts/ts/CrossAsync.d.ts.map +1 -0
  131. package/dist/ts/ts/FileSystem/Commit.d.ts +13 -0
  132. package/dist/ts/ts/FileSystem/Commit.d.ts.map +1 -0
  133. package/dist/ts/ts/FileSystem/DefaultGitattributes.d.ts.map +1 -0
  134. package/dist/ts/ts/FileSystem/DefaultGitignore.d.ts.map +1 -0
  135. package/dist/ts/ts/FileSystem/FileSystem.d.ts +21 -0
  136. package/dist/ts/ts/FileSystem/FileSystem.d.ts.map +1 -0
  137. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts +55 -0
  138. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts.map +1 -0
  139. package/dist/ts/ts/FileSystem/Path.d.ts.map +1 -0
  140. package/dist/ts/ts/Json/Assay.d.ts +19 -0
  141. package/dist/ts/ts/Json/Assay.d.ts.map +1 -0
  142. package/dist/ts/ts/Json/Comment.d.ts +14 -0
  143. package/dist/ts/ts/Json/Comment.d.ts.map +1 -0
  144. package/dist/ts/ts/Json/Data.d.ts +17 -0
  145. package/dist/ts/ts/Json/Data.d.ts.map +1 -0
  146. package/dist/ts/ts/Json/DataFile.d.ts +7 -0
  147. package/dist/ts/ts/Json/DataFile.d.ts.map +1 -0
  148. package/dist/ts/ts/Json/DataMap/DataContext.d.ts +5 -0
  149. package/dist/ts/ts/Json/DataMap/DataContext.d.ts.map +1 -0
  150. package/dist/ts/ts/Json/DataMap/DataMap.d.ts +11 -0
  151. package/dist/ts/ts/Json/DataMap/DataMap.d.ts.map +1 -0
  152. package/dist/ts/ts/Json/Decode.d.ts +18 -0
  153. package/dist/ts/ts/Json/Decode.d.ts.map +1 -0
  154. package/dist/ts/ts/Json/Encode.d.ts +23 -0
  155. package/dist/ts/ts/Json/Encode.d.ts.map +1 -0
  156. package/dist/ts/ts/Json/IDTable.d.ts +5 -0
  157. package/dist/ts/ts/Json/IDTable.d.ts.map +1 -0
  158. package/dist/ts/ts/Json/Investigation.d.ts +20 -0
  159. package/dist/ts/ts/Json/Investigation.d.ts.map +1 -0
  160. package/dist/ts/ts/Json/OntologyAnnotation.d.ts +18 -0
  161. package/dist/ts/ts/Json/OntologyAnnotation.d.ts.map +1 -0
  162. package/dist/ts/ts/Json/OntologySourceReference.d.ts +12 -0
  163. package/dist/ts/ts/Json/OntologySourceReference.d.ts.map +1 -0
  164. package/dist/ts/ts/Json/Person.d.ts +22 -0
  165. package/dist/ts/ts/Json/Person.d.ts.map +1 -0
  166. package/dist/ts/ts/Json/Process/AssayMaterials.d.ts +7 -0
  167. package/dist/ts/ts/Json/Process/AssayMaterials.d.ts.map +1 -0
  168. package/dist/ts/ts/Json/Process/Component.d.ts +11 -0
  169. package/dist/ts/ts/Json/Process/Component.d.ts.map +1 -0
  170. package/dist/ts/ts/Json/Process/Factor.d.ts +8 -0
  171. package/dist/ts/ts/Json/Process/Factor.d.ts.map +1 -0
  172. package/dist/ts/ts/Json/Process/FactorValue.d.ts +11 -0
  173. package/dist/ts/ts/Json/Process/FactorValue.d.ts.map +1 -0
  174. package/dist/ts/ts/Json/Process/Material.d.ts +12 -0
  175. package/dist/ts/ts/Json/Process/Material.d.ts.map +1 -0
  176. package/dist/ts/ts/Json/Process/MaterialAttribute.d.ts +8 -0
  177. package/dist/ts/ts/Json/Process/MaterialAttribute.d.ts.map +1 -0
  178. package/dist/ts/ts/Json/Process/MaterialAttributeValue.d.ts +11 -0
  179. package/dist/ts/ts/Json/Process/MaterialAttributeValue.d.ts.map +1 -0
  180. package/dist/ts/ts/Json/Process/MaterialType.d.ts +7 -0
  181. package/dist/ts/ts/Json/Process/MaterialType.d.ts.map +1 -0
  182. package/dist/ts/ts/Json/Process/Process.d.ts +10 -0
  183. package/dist/ts/ts/Json/Process/Process.d.ts.map +1 -0
  184. package/dist/ts/ts/Json/Process/ProcessInput.d.ts +9 -0
  185. package/dist/ts/ts/Json/Process/ProcessInput.d.ts.map +1 -0
  186. package/dist/ts/ts/Json/Process/ProcessOutput.d.ts +9 -0
  187. package/dist/ts/ts/Json/Process/ProcessOutput.d.ts.map +1 -0
  188. package/dist/ts/ts/Json/Process/ProcessParameterValue.d.ts +11 -0
  189. package/dist/ts/ts/Json/Process/ProcessParameterValue.d.ts.map +1 -0
  190. package/dist/ts/ts/Json/Process/Protocol.d.ts +10 -0
  191. package/dist/ts/ts/Json/Process/Protocol.d.ts.map +1 -0
  192. package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts +8 -0
  193. package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts.map +1 -0
  194. package/dist/ts/ts/Json/Process/Sample.d.ts +15 -0
  195. package/dist/ts/ts/Json/Process/Sample.d.ts.map +1 -0
  196. package/dist/ts/ts/Json/Process/Source.d.ts +12 -0
  197. package/dist/ts/ts/Json/Process/Source.d.ts.map +1 -0
  198. package/dist/ts/ts/Json/Process/StudyMaterials.d.ts +7 -0
  199. package/dist/ts/ts/Json/Process/StudyMaterials.d.ts.map +1 -0
  200. package/dist/ts/ts/Json/Process/Value.d.ts +7 -0
  201. package/dist/ts/ts/Json/Process/Value.d.ts.map +1 -0
  202. package/dist/ts/ts/Json/PropertyValue.d.ts +9 -0
  203. package/dist/ts/ts/Json/PropertyValue.d.ts.map +1 -0
  204. package/dist/ts/ts/Json/Publication.d.ts +14 -0
  205. package/dist/ts/ts/Json/Publication.d.ts.map +1 -0
  206. package/dist/ts/ts/Json/ROCrate/LDContext.d.ts +5 -0
  207. package/dist/ts/ts/Json/ROCrate/LDContext.d.ts.map +1 -0
  208. package/dist/ts/ts/Json/ROCrate/LDGraph.d.ts +5 -0
  209. package/dist/ts/ts/Json/ROCrate/LDGraph.d.ts.map +1 -0
  210. package/dist/ts/ts/Json/ROCrate/LDNode.d.ts +13 -0
  211. package/dist/ts/ts/Json/ROCrate/LDNode.d.ts.map +1 -0
  212. package/dist/ts/ts/Json/ROCrate/LDRef.d.ts +5 -0
  213. package/dist/ts/ts/Json/ROCrate/LDRef.d.ts.map +1 -0
  214. package/dist/ts/ts/Json/ROCrate/LDValue.d.ts +7 -0
  215. package/dist/ts/ts/Json/ROCrate/LDValue.d.ts.map +1 -0
  216. package/dist/ts/ts/Json/StringTable.d.ts +9 -0
  217. package/dist/ts/ts/Json/StringTable.d.ts.map +1 -0
  218. package/dist/ts/ts/Json/Study.d.ts +26 -0
  219. package/dist/ts/ts/Json/Study.d.ts.map +1 -0
  220. package/dist/ts/ts/Json/Table/ArcTable.d.ts +15 -0
  221. package/dist/ts/ts/Json/Table/ArcTable.d.ts.map +1 -0
  222. package/dist/ts/ts/Json/Table/CellTable.d.ts +11 -0
  223. package/dist/ts/ts/Json/Table/CellTable.d.ts.map +1 -0
  224. package/dist/ts/ts/Json/Table/CompositeCell.d.ts +10 -0
  225. package/dist/ts/ts/Json/Table/CompositeCell.d.ts.map +1 -0
  226. package/dist/ts/ts/Json/Table/CompositeHeader.d.ts +5 -0
  227. package/dist/ts/ts/Json/Table/CompositeHeader.d.ts.map +1 -0
  228. package/dist/ts/ts/Json/Table/IOType.d.ts +5 -0
  229. package/dist/ts/ts/Json/Table/IOType.d.ts.map +1 -0
  230. package/dist/ts/ts/Json/Table/OATable.d.ts +10 -0
  231. package/dist/ts/ts/Json/Table/OATable.d.ts.map +1 -0
  232. package/dist/ts/ts/Json/Table/Templates.d.ts +15 -0
  233. package/dist/ts/ts/Json/Table/Templates.d.ts.map +1 -0
  234. package/dist/ts/ts/Json/context/rocrate/isa_assay_context.d.ts +26 -0
  235. package/dist/ts/ts/Json/context/rocrate/isa_assay_context.d.ts.map +1 -0
  236. package/dist/ts/ts/Json/context/rocrate/isa_comment_context.d.ts +16 -0
  237. package/dist/ts/ts/Json/context/rocrate/isa_comment_context.d.ts.map +1 -0
  238. package/dist/ts/ts/Json/context/rocrate/isa_data_context.d.ts +18 -0
  239. package/dist/ts/ts/Json/context/rocrate/isa_data_context.d.ts.map +1 -0
  240. package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.d.ts +26 -0
  241. package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.d.ts.map +1 -0
  242. package/dist/ts/ts/Json/context/rocrate/isa_material_context.d.ts +19 -0
  243. package/dist/ts/ts/Json/context/rocrate/isa_material_context.d.ts.map +1 -0
  244. package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.d.ts +17 -0
  245. package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.d.ts.map +1 -0
  246. package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.d.ts +19 -0
  247. package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.d.ts.map +1 -0
  248. package/dist/ts/ts/Json/context/rocrate/isa_organization_context.d.ts +15 -0
  249. package/dist/ts/ts/Json/context/rocrate/isa_organization_context.d.ts.map +1 -0
  250. package/dist/ts/ts/Json/context/rocrate/isa_person_context.d.ts +25 -0
  251. package/dist/ts/ts/Json/context/rocrate/isa_person_context.d.ts.map +1 -0
  252. package/dist/ts/ts/Json/context/rocrate/isa_process_context.d.ts +23 -0
  253. package/dist/ts/ts/Json/context/rocrate/isa_process_context.d.ts.map +1 -0
  254. package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.d.ts +22 -0
  255. package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.d.ts.map +1 -0
  256. package/dist/ts/ts/Json/context/rocrate/isa_publication_context.d.ts +19 -0
  257. package/dist/ts/ts/Json/context/rocrate/isa_publication_context.d.ts.map +1 -0
  258. package/dist/ts/ts/Json/context/rocrate/isa_sample_context.d.ts +18 -0
  259. package/dist/ts/ts/Json/context/rocrate/isa_sample_context.d.ts.map +1 -0
  260. package/dist/ts/ts/Json/context/rocrate/isa_source_context.d.ts +18 -0
  261. package/dist/ts/ts/Json/context/rocrate/isa_source_context.d.ts.map +1 -0
  262. package/dist/ts/ts/Json/context/rocrate/isa_study_context.d.ts +34 -0
  263. package/dist/ts/ts/Json/context/rocrate/isa_study_context.d.ts.map +1 -0
  264. package/dist/ts/ts/Json/context/rocrate/property_value_context.d.ts +3 -0
  265. package/dist/ts/ts/Json/context/rocrate/property_value_context.d.ts.map +1 -0
  266. package/dist/ts/ts/Json/context/rocrate/rocrate_context.d.ts +16 -0
  267. package/dist/ts/ts/Json/context/rocrate/rocrate_context.d.ts.map +1 -0
  268. package/dist/ts/ts/Json.d.ts +90 -0
  269. package/dist/ts/ts/Json.d.ts.map +1 -0
  270. package/dist/ts/ts/JsonIO/Assay.d.ts +19 -0
  271. package/dist/ts/ts/JsonIO/Assay.d.ts.map +1 -0
  272. package/dist/ts/ts/JsonIO/Investigation.d.ts +19 -0
  273. package/dist/ts/ts/JsonIO/Investigation.d.ts.map +1 -0
  274. package/dist/ts/ts/JsonIO/LDObject.d.ts +29 -0
  275. package/dist/ts/ts/JsonIO/LDObject.d.ts.map +1 -0
  276. package/dist/ts/ts/JsonIO/OntologyAnnotation.d.ts +16 -0
  277. package/dist/ts/ts/JsonIO/OntologyAnnotation.d.ts.map +1 -0
  278. package/dist/ts/ts/JsonIO/Study.d.ts +20 -0
  279. package/dist/ts/ts/JsonIO/Study.d.ts.map +1 -0
  280. package/dist/ts/ts/JsonIO/Table/Compression.d.ts +8 -0
  281. package/dist/ts/ts/JsonIO/Table/Compression.d.ts.map +1 -0
  282. package/dist/ts/ts/JsonIO/Table/Templates.d.ts +15 -0
  283. package/dist/ts/ts/JsonIO/Table/Templates.d.ts.map +1 -0
  284. package/dist/ts/ts/ROCrate/Generic/Comment.d.ts +21 -0
  285. package/dist/ts/ts/ROCrate/Generic/Comment.d.ts.map +1 -0
  286. package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts +92 -0
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@@ -1,347 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.ISAJson_decoder = exports.ISAJson_allowedFields = exports.ROCrate_decoder = exports.decoder = void 0;
4
- exports.Helper_getAssayInformation = Helper_getAssayInformation;
5
- exports.encoder = encoder;
6
- exports.encoderCompressed = encoderCompressed;
7
- exports.decoderCompressed = decoderCompressed;
8
- exports.ROCrate_genID = ROCrate_genID;
9
- exports.ROCrate_encoder = ROCrate_encoder;
10
- exports.ISAJson_encoder = ISAJson_encoder;
11
- const Collections_js_1 = require("../Core/Helper/Collections.js");
12
- const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
13
- const List_js_1 = require("@fable-org/fable-library-js/List.js");
14
- const ArcTypes_js_1 = require("../Core/ArcTypes.js");
15
- const Encode_js_1 = require("./Encode.js");
16
- const Publication_js_1 = require("./Publication.js");
17
- const Person_js_1 = require("./Person.js");
18
- const OntologyAnnotation_js_1 = require("./OntologyAnnotation.js");
19
- const ArcTable_js_1 = require("./Table/ArcTable.js");
20
- const DataMap_js_1 = require("./DataMap/DataMap.js");
21
- const Comment_js_1 = require("./Comment.js");
22
- const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
23
- const Decode_fs_js_1 = require("../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
24
- const Util_js_1 = require("@fable-org/fable-library-js/Util.js");
25
- const String_js_1 = require("@fable-org/fable-library-js/String.js");
26
- const Identifier_js_1 = require("../Core/Helper/Identifier.js");
27
- const Conversion_js_1 = require("../Core/Conversion.js");
28
- const Encode_fs_js_1 = require("../fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.js");
29
- const Process_js_1 = require("./Process/Process.js");
30
- const Assay_js_1 = require("./Assay.js");
31
- const Data_js_1 = require("./Data.js");
32
- const ProcessSequence_js_1 = require("../Core/Process/ProcessSequence.js");
33
- const isa_study_context_js_1 = require("./context/rocrate/isa_study_context.js");
34
- const Factor_js_1 = require("./Process/Factor.js");
35
- const MaterialAttribute_js_1 = require("./Process/MaterialAttribute.js");
36
- const StudyMaterials_js_1 = require("./Process/StudyMaterials.js");
37
- const Protocol_js_1 = require("./Process/Protocol.js");
38
- const IDTable_js_1 = require("./IDTable.js");
39
- const Decode_js_1 = require("./Decode.js");
40
- /**
41
- * Get registered assays or get assays from `assays` if IsSome
42
- */
43
- function Helper_getAssayInformation(assays, study) {
44
- if (assays != null) {
45
- return (0, Collections_js_1.ResizeArray_map)((assayId) => (0, Option_js_1.defaultArg)((0, List_js_1.tryFind)((a) => (a.Identifier === assayId), (0, Option_js_1.value)(assays)), ArcTypes_js_1.ArcAssay.init(assayId)), study.RegisteredAssayIdentifiers);
46
- }
47
- else {
48
- return study.GetRegisteredAssaysOrIdentifier();
49
- }
50
- }
51
- function encoder(study) {
52
- let value;
53
- const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["Identifier", (value = study.Identifier, {
54
- Encode(helpers) {
55
- return helpers.encodeString(value);
56
- },
57
- })], (0, Encode_js_1.tryInclude)("Title", (value_1) => ({
58
- Encode(helpers_1) {
59
- return helpers_1.encodeString(value_1);
60
- },
61
- }), study.Title), (0, Encode_js_1.tryInclude)("Description", (value_3) => ({
62
- Encode(helpers_2) {
63
- return helpers_2.encodeString(value_3);
64
- },
65
- }), study.Description), (0, Encode_js_1.tryInclude)("SubmissionDate", (value_5) => ({
66
- Encode(helpers_3) {
67
- return helpers_3.encodeString(value_5);
68
- },
69
- }), study.SubmissionDate), (0, Encode_js_1.tryInclude)("PublicReleaseDate", (value_7) => ({
70
- Encode(helpers_4) {
71
- return helpers_4.encodeString(value_7);
72
- },
73
- }), study.PublicReleaseDate), (0, Encode_js_1.tryIncludeSeq)("Publications", Publication_js_1.encoder, study.Publications), (0, Encode_js_1.tryIncludeSeq)("Contacts", Person_js_1.encoder, study.Contacts), (0, Encode_js_1.tryIncludeSeq)("StudyDesignDescriptors", OntologyAnnotation_js_1.OntologyAnnotation_encoder, study.StudyDesignDescriptors), (0, Encode_js_1.tryIncludeSeq)("Tables", ArcTable_js_1.encoder, study.Tables), (0, Encode_js_1.tryInclude)("DataMap", DataMap_js_1.encoder, study.DataMap), (0, Encode_js_1.tryIncludeSeq)("RegisteredAssayIdentifiers", (value_9) => ({
74
- Encode(helpers_5) {
75
- return helpers_5.encodeString(value_9);
76
- },
77
- }), study.RegisteredAssayIdentifiers), (0, Encode_js_1.tryIncludeSeq)("Comments", Comment_js_1.encoder, study.Comments)]));
78
- return {
79
- Encode(helpers_6) {
80
- const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
81
- return helpers_6.encodeObject(arg);
82
- },
83
- };
84
- }
85
- exports.decoder = (0, Decode_fs_js_1.object)((get$) => {
86
- let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
87
- return new ArcTypes_js_1.ArcStudy((objectArg = get$.Required, objectArg.Field("Identifier", Decode_fs_js_1.string)), (0, Option_js_1.unwrap)((objectArg_1 = get$.Optional, objectArg_1.Field("Title", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_2 = get$.Optional, objectArg_2.Field("Description", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((arg_11 = (0, Decode_fs_js_1.resizeArray)(Publication_js_1.decoder), (objectArg_5 = get$.Optional, objectArg_5.Field("Publications", arg_11)))), (0, Option_js_1.unwrap)((arg_13 = (0, Decode_fs_js_1.resizeArray)(Person_js_1.decoder), (objectArg_6 = get$.Optional, objectArg_6.Field("Contacts", arg_13)))), (0, Option_js_1.unwrap)((arg_15 = (0, Decode_fs_js_1.resizeArray)(OntologyAnnotation_js_1.OntologyAnnotation_decoder), (objectArg_7 = get$.Optional, objectArg_7.Field("StudyDesignDescriptors", arg_15)))), (0, Option_js_1.unwrap)((arg_17 = (0, Decode_fs_js_1.resizeArray)(ArcTable_js_1.decoder), (objectArg_8 = get$.Optional, objectArg_8.Field("Tables", arg_17)))), (0, Option_js_1.unwrap)((objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", DataMap_js_1.decoder))), (0, Option_js_1.unwrap)((arg_21 = (0, Decode_fs_js_1.resizeArray)(Decode_fs_js_1.string), (objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredAssayIdentifiers", arg_21)))), (0, Option_js_1.unwrap)((arg_23 = (0, Decode_fs_js_1.resizeArray)(Comment_js_1.decoder), (objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23)))));
88
- });
89
- function encoderCompressed(stringTable, oaTable, cellTable, study) {
90
- let value;
91
- const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["Identifier", (value = study.Identifier, {
92
- Encode(helpers) {
93
- return helpers.encodeString(value);
94
- },
95
- })], (0, Encode_js_1.tryInclude)("Title", (value_1) => ({
96
- Encode(helpers_1) {
97
- return helpers_1.encodeString(value_1);
98
- },
99
- }), study.Title), (0, Encode_js_1.tryInclude)("Description", (value_3) => ({
100
- Encode(helpers_2) {
101
- return helpers_2.encodeString(value_3);
102
- },
103
- }), study.Description), (0, Encode_js_1.tryInclude)("SubmissionDate", (value_5) => ({
104
- Encode(helpers_3) {
105
- return helpers_3.encodeString(value_5);
106
- },
107
- }), study.SubmissionDate), (0, Encode_js_1.tryInclude)("PublicReleaseDate", (value_7) => ({
108
- Encode(helpers_4) {
109
- return helpers_4.encodeString(value_7);
110
- },
111
- }), study.PublicReleaseDate), (0, Encode_js_1.tryIncludeSeq)("Publications", Publication_js_1.encoder, study.Publications), (0, Encode_js_1.tryIncludeSeq)("Contacts", Person_js_1.encoder, study.Contacts), (0, Encode_js_1.tryIncludeSeq)("StudyDesignDescriptors", OntologyAnnotation_js_1.OntologyAnnotation_encoder, study.StudyDesignDescriptors), (0, Encode_js_1.tryIncludeSeq)("Tables", (table) => (0, ArcTable_js_1.encoderCompressed)(stringTable, oaTable, cellTable, table), study.Tables), (0, Encode_js_1.tryInclude)("DataMap", (dm) => (0, DataMap_js_1.encoderCompressed)(stringTable, oaTable, cellTable, dm), study.DataMap), (0, Encode_js_1.tryIncludeSeq)("RegisteredAssayIdentifiers", (value_9) => ({
112
- Encode(helpers_5) {
113
- return helpers_5.encodeString(value_9);
114
- },
115
- }), study.RegisteredAssayIdentifiers), (0, Encode_js_1.tryIncludeSeq)("Comments", Comment_js_1.encoder, study.Comments)]));
116
- return {
117
- Encode(helpers_6) {
118
- const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_6)], values_1);
119
- return helpers_6.encodeObject(arg);
120
- },
121
- };
122
- }
123
- function decoderCompressed(stringTable, oaTable, cellTable) {
124
- return (0, Decode_fs_js_1.object)((get$) => {
125
- let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
126
- return new ArcTypes_js_1.ArcStudy((objectArg = get$.Required, objectArg.Field("Identifier", Decode_fs_js_1.string)), (0, Option_js_1.unwrap)((objectArg_1 = get$.Optional, objectArg_1.Field("Title", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_2 = get$.Optional, objectArg_2.Field("Description", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((arg_11 = (0, Decode_fs_js_1.resizeArray)(Publication_js_1.decoder), (objectArg_5 = get$.Optional, objectArg_5.Field("Publications", arg_11)))), (0, Option_js_1.unwrap)((arg_13 = (0, Decode_fs_js_1.resizeArray)(Person_js_1.decoder), (objectArg_6 = get$.Optional, objectArg_6.Field("Contacts", arg_13)))), (0, Option_js_1.unwrap)((arg_15 = (0, Decode_fs_js_1.resizeArray)(OntologyAnnotation_js_1.OntologyAnnotation_decoder), (objectArg_7 = get$.Optional, objectArg_7.Field("StudyDesignDescriptors", arg_15)))), (0, Option_js_1.unwrap)((arg_17 = (0, Decode_fs_js_1.resizeArray)((0, ArcTable_js_1.decoderCompressed)(stringTable, oaTable, cellTable)), (objectArg_8 = get$.Optional, objectArg_8.Field("Tables", arg_17)))), (0, Option_js_1.unwrap)((arg_19 = (0, DataMap_js_1.decoderCompressed)(stringTable, oaTable, cellTable), (objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", arg_19)))), (0, Option_js_1.unwrap)((arg_21 = (0, Decode_fs_js_1.resizeArray)(Decode_fs_js_1.string), (objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredAssayIdentifiers", arg_21)))), (0, Option_js_1.unwrap)((arg_23 = (0, Decode_fs_js_1.resizeArray)(Comment_js_1.decoder), (objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23)))));
127
- });
128
- }
129
- function ROCrate_genID(a) {
130
- const matchValue = a.Identifier;
131
- if (matchValue === "") {
132
- return "#EmptyStudy";
133
- }
134
- else {
135
- return `studies/${(0, String_js_1.replace)(matchValue, " ", "_")}/`;
136
- }
137
- }
138
- function ROCrate_encoder(assays, s) {
139
- let value, value_3, studyName, studyName_1;
140
- const fileName = (0, Identifier_js_1.Study_tryFileNameFromIdentifier)(s.Identifier);
141
- const processes = (0, Conversion_js_1.ARCtrl_ArcTables__ArcTables_GetProcesses)(s);
142
- const assays_1 = Helper_getAssayInformation(assays, s);
143
- const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["@id", (value = ROCrate_genID(s), {
144
- Encode(helpers) {
145
- return helpers.encodeString(value);
146
- },
147
- })], ["@type", (0, Encode_fs_js_1.list)((0, List_js_1.singleton)({
148
- Encode(helpers_1) {
149
- return helpers_1.encodeString("Study");
150
- },
151
- }))], ["additionalType", {
152
- Encode(helpers_2) {
153
- return helpers_2.encodeString("Study");
154
- },
155
- }], ["identifier", (value_3 = s.Identifier, {
156
- Encode(helpers_3) {
157
- return helpers_3.encodeString(value_3);
158
- },
159
- })], (0, Encode_js_1.tryInclude)("filename", (value_4) => ({
160
- Encode(helpers_4) {
161
- return helpers_4.encodeString(value_4);
162
- },
163
- }), fileName), (0, Encode_js_1.tryInclude)("title", (value_6) => ({
164
- Encode(helpers_5) {
165
- return helpers_5.encodeString(value_6);
166
- },
167
- }), s.Title), (0, Encode_js_1.tryInclude)("description", (value_8) => ({
168
- Encode(helpers_6) {
169
- return helpers_6.encodeString(value_8);
170
- },
171
- }), s.Description), (0, Encode_js_1.tryIncludeSeq)("studyDesignDescriptors", OntologyAnnotation_js_1.OntologyAnnotation_ROCrate_encoderDefinedTerm, s.StudyDesignDescriptors), (0, Encode_js_1.tryInclude)("submissionDate", (value_10) => ({
172
- Encode(helpers_7) {
173
- return helpers_7.encodeString(value_10);
174
- },
175
- }), s.SubmissionDate), (0, Encode_js_1.tryInclude)("publicReleaseDate", (value_12) => ({
176
- Encode(helpers_8) {
177
- return helpers_8.encodeString(value_12);
178
- },
179
- }), s.PublicReleaseDate), (0, Encode_js_1.tryIncludeSeq)("publications", Publication_js_1.ROCrate_encoder, s.Publications), (0, Encode_js_1.tryIncludeSeq)("people", Person_js_1.ROCrate_encoder, s.Contacts), (0, Encode_js_1.tryIncludeList)("processSequence", (studyName = s.Identifier, (oa_3) => (0, Process_js_1.ROCrate_encoder)(studyName, undefined, oa_3)), processes), (0, Encode_js_1.tryIncludeSeq)("assays", (studyName_1 = s.Identifier, (a_1) => (0, Assay_js_1.ROCrate_encoder)(studyName_1, a_1)), assays_1), (0, Encode_js_1.tryIncludeList)("dataFiles", Data_js_1.ROCrate_encoder, (0, ProcessSequence_js_1.getData)(processes)), (0, Encode_js_1.tryIncludeSeq)("comments", Comment_js_1.ROCrate_encoder, s.Comments), ["@context", isa_study_context_js_1.context_jsonvalue]]));
180
- return {
181
- Encode(helpers_9) {
182
- const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_9)], values_1);
183
- return helpers_9.encodeObject(arg);
184
- },
185
- };
186
- }
187
- exports.ROCrate_decoder = (0, Decode_fs_js_1.object)((get$) => {
188
- let objectArg, arg_6, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, arg_16, objectArg_7, arg_18, objectArg_8, arg_20, objectArg_9, arg_22, objectArg_10;
189
- const identifier = (0, Option_js_1.defaultArg)((0, Option_js_1.bind)(Identifier_js_1.Study_tryIdentifierFromFileName, (objectArg = get$.Optional, objectArg.Field("filename", Decode_fs_js_1.string))), (0, Identifier_js_1.createMissingIdentifier)());
190
- let assays;
191
- const arg_3 = (0, Decode_fs_js_1.list)(Assay_js_1.ROCrate_decoder);
192
- const objectArg_1 = get$.Optional;
193
- assays = objectArg_1.Field("assays", arg_3);
194
- const assayIdentifiers = (0, Option_js_1.map)((arg_4) => {
195
- const collection = (0, List_js_1.map)((a) => a.Identifier, arg_4);
196
- return Array.from(collection);
197
- }, assays);
198
- const tables = (0, Option_js_1.map)((ps) => (0, Conversion_js_1.ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D)(ps).Tables, (arg_6 = (0, Decode_fs_js_1.list)(Process_js_1.ROCrate_decoder), (objectArg_2 = get$.Optional, objectArg_2.Field("processSequence", arg_6))));
199
- return [new ArcTypes_js_1.ArcStudy(identifier, (0, Option_js_1.unwrap)((objectArg_3 = get$.Optional, objectArg_3.Field("title", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_4 = get$.Optional, objectArg_4.Field("description", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_5 = get$.Optional, objectArg_5.Field("submissionDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_6 = get$.Optional, objectArg_6.Field("publicReleaseDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((arg_16 = (0, Decode_fs_js_1.resizeArray)(Publication_js_1.ROCrate_decoder), (objectArg_7 = get$.Optional, objectArg_7.Field("publications", arg_16)))), (0, Option_js_1.unwrap)((arg_18 = (0, Decode_fs_js_1.resizeArray)(Person_js_1.ROCrate_decoder), (objectArg_8 = get$.Optional, objectArg_8.Field("people", arg_18)))), (0, Option_js_1.unwrap)((arg_20 = (0, Decode_fs_js_1.resizeArray)(OntologyAnnotation_js_1.OntologyAnnotation_ROCrate_decoderDefinedTerm), (objectArg_9 = get$.Optional, objectArg_9.Field("studyDesignDescriptors", arg_20)))), (0, Option_js_1.unwrap)(tables), undefined, (0, Option_js_1.unwrap)(assayIdentifiers), (0, Option_js_1.unwrap)((arg_22 = (0, Decode_fs_js_1.resizeArray)(Comment_js_1.ROCrate_decoder), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", arg_22))))), (0, Option_js_1.defaultArg)(assays, (0, List_js_1.empty)())];
200
- });
201
- /**
202
- * If assays.IsSome then try to get registered assays from external list, otherwise try to access investigation or create empty defaults.
203
- */
204
- function ISAJson_encoder(idMap, assays, s) {
205
- const f = (s_1) => {
206
- let studyName, value_6, value_8, studyName_1, studyName_2;
207
- const study = s_1.Copy(true);
208
- const fileName = (0, Identifier_js_1.Study_fileNameFromIdentifier)(study.Identifier);
209
- let assays_1;
210
- const n = [];
211
- let enumerator = (0, Util_js_1.getEnumerator)(Helper_getAssayInformation(assays, study));
212
- try {
213
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
214
- const a = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
215
- const assay = a.Copy();
216
- let enumerator_1 = (0, Util_js_1.getEnumerator)(assay.Performers);
217
- try {
218
- while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
219
- const person_1 = (0, Conversion_js_1.Person_setSourceAssayComment)(enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"](), assay.Identifier);
220
- void (study.Contacts.push(person_1));
221
- }
222
- }
223
- finally {
224
- (0, Util_js_1.disposeSafe)(enumerator_1);
225
- }
226
- assay.Performers = [];
227
- void (n.push(assay));
228
- }
229
- }
230
- finally {
231
- (0, Util_js_1.disposeSafe)(enumerator);
232
- }
233
- assays_1 = n;
234
- const processes = (0, Conversion_js_1.ARCtrl_ArcTables__ArcTables_GetProcesses)(study);
235
- const encodedUnits = (0, Encode_js_1.tryIncludeList)("unitCategories", (oa) => (0, OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_encoder)(idMap, oa), (0, ProcessSequence_js_1.getUnits)(processes));
236
- const encodedFactors = (0, Encode_js_1.tryIncludeList)("factors", (value_1) => (0, Factor_js_1.encoder)(idMap, value_1), (0, ProcessSequence_js_1.getFactors)(processes));
237
- const encodedCharacteristics = (0, Encode_js_1.tryIncludeList)("characteristicCategories", (value_3) => (0, MaterialAttribute_js_1.encoder)(idMap, value_3), (0, ProcessSequence_js_1.getCharacteristics)(processes));
238
- const encodedMaterials = (0, Encode_js_1.tryInclude)("materials", (ps) => (0, StudyMaterials_js_1.encoder)(idMap, ps), (0, Collections_js_1.Option_fromValueWithDefault)((0, List_js_1.empty)(), processes));
239
- let encodedProtocols;
240
- const value_5 = (0, ProcessSequence_js_1.getProtocols)(processes);
241
- encodedProtocols = (0, Encode_js_1.tryIncludeList)("protocols", (studyName = s_1.Identifier, (oa_1) => (0, Protocol_js_1.ISAJson_encoder)(studyName, undefined, undefined, idMap, oa_1)), value_5);
242
- const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["@id", (value_6 = ROCrate_genID(study), {
243
- Encode(helpers) {
244
- return helpers.encodeString(value_6);
245
- },
246
- })], ["filename", {
247
- Encode(helpers_1) {
248
- return helpers_1.encodeString(fileName);
249
- },
250
- }], ["identifier", (value_8 = study.Identifier, {
251
- Encode(helpers_2) {
252
- return helpers_2.encodeString(value_8);
253
- },
254
- })], (0, Encode_js_1.tryInclude)("title", (value_9) => ({
255
- Encode(helpers_3) {
256
- return helpers_3.encodeString(value_9);
257
- },
258
- }), study.Title), (0, Encode_js_1.tryInclude)("description", (value_11) => ({
259
- Encode(helpers_4) {
260
- return helpers_4.encodeString(value_11);
261
- },
262
- }), study.Description), (0, Encode_js_1.tryInclude)("submissionDate", (value_13) => ({
263
- Encode(helpers_5) {
264
- return helpers_5.encodeString(value_13);
265
- },
266
- }), study.SubmissionDate), (0, Encode_js_1.tryInclude)("publicReleaseDate", (value_15) => ({
267
- Encode(helpers_6) {
268
- return helpers_6.encodeString(value_15);
269
- },
270
- }), study.PublicReleaseDate), (0, Encode_js_1.tryIncludeSeq)("publications", (oa_2) => (0, Publication_js_1.ISAJson_encoder)(idMap, oa_2), study.Publications), (0, Encode_js_1.tryIncludeSeq)("people", (person_2) => (0, Person_js_1.ISAJson_encoder)(idMap, person_2), study.Contacts), (0, Encode_js_1.tryIncludeSeq)("studyDesignDescriptors", (oa_3) => (0, OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_encoder)(idMap, oa_3), study.StudyDesignDescriptors), encodedProtocols, encodedMaterials, (0, Encode_js_1.tryIncludeList)("processSequence", (studyName_1 = s_1.Identifier, (oa_4) => (0, Process_js_1.ISAJson_encoder)(studyName_1, undefined, idMap, oa_4)), processes), (0, Encode_js_1.tryIncludeSeq)("assays", (studyName_2 = s_1.Identifier, (a_2) => (0, Assay_js_1.ISAJson_encoder)(studyName_2, idMap, a_2)), assays_1), encodedFactors, encodedCharacteristics, encodedUnits, (0, Encode_js_1.tryIncludeSeq)("comments", (comment) => (0, Comment_js_1.ISAJson_encoder)(idMap, comment), study.Comments)]));
271
- return {
272
- Encode(helpers_7) {
273
- const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_7)], values_1);
274
- return helpers_7.encodeObject(arg);
275
- },
276
- };
277
- };
278
- if (idMap != null) {
279
- return (0, IDTable_js_1.encode)(ROCrate_genID, f, s, (0, Option_js_1.value)(idMap));
280
- }
281
- else {
282
- return f(s);
283
- }
284
- }
285
- exports.ISAJson_allowedFields = (0, List_js_1.ofArray)(["@id", "filename", "identifier", "title", "description", "submissionDate", "publicReleaseDate", "publications", "people", "studyDesignDescriptors", "protocols", "materials", "assays", "factors", "characteristicCategories", "unitCategories", "processSequence", "comments", "@type", "@context"]);
286
- exports.ISAJson_decoder = (0, Decode_js_1.Decode_objectNoAdditionalProperties)(exports.ISAJson_allowedFields, (get$) => {
287
- let objectArg, arg_5, objectArg_2, objectArg_5, objectArg_6, objectArg_7, objectArg_8, arg_21, objectArg_9, arg_23, objectArg_10, arg_25, objectArg_11;
288
- const identifier = (0, Option_js_1.defaultArgWith)((objectArg = get$.Optional, objectArg.Field("identifier", Decode_fs_js_1.string)), () => {
289
- let objectArg_1;
290
- return (0, Option_js_1.defaultArg)((0, Option_js_1.bind)(Identifier_js_1.Study_tryIdentifierFromFileName, (objectArg_1 = get$.Optional, objectArg_1.Field("filename", Decode_fs_js_1.string))), (0, Identifier_js_1.createMissingIdentifier)());
291
- });
292
- const tables = (0, Option_js_1.map)((arg_6) => {
293
- const a = (0, Conversion_js_1.ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D)(arg_6);
294
- return a.Tables;
295
- }, (arg_5 = (0, Decode_fs_js_1.list)(Process_js_1.ISAJson_decoder), (objectArg_2 = get$.Optional, objectArg_2.Field("processSequence", arg_5))));
296
- let assays;
297
- const arg_8 = (0, Decode_fs_js_1.list)(Assay_js_1.ISAJson_decoder);
298
- const objectArg_3 = get$.Optional;
299
- assays = objectArg_3.Field("assays", arg_8);
300
- let personsRaw;
301
- const arg_10 = (0, Decode_fs_js_1.resizeArray)(Person_js_1.ISAJson_decoder);
302
- const objectArg_4 = get$.Optional;
303
- personsRaw = objectArg_4.Field("people", arg_10);
304
- const persons = [];
305
- if (personsRaw != null) {
306
- let enumerator = (0, Util_js_1.getEnumerator)((0, Option_js_1.value)(personsRaw));
307
- try {
308
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
309
- const person = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
310
- const sourceAssays = (0, Conversion_js_1.Person_getSourceAssayIdentifiersFromComments)(person);
311
- const enumerator_1 = (0, Util_js_1.getEnumerator)(sourceAssays);
312
- try {
313
- while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
314
- const assayIdentifier = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
315
- const enumerator_2 = (0, Util_js_1.getEnumerator)((0, Option_js_1.value)(assays));
316
- try {
317
- while (enumerator_2["System.Collections.IEnumerator.MoveNext"]()) {
318
- const assay = enumerator_2["System.Collections.Generic.IEnumerator`1.get_Current"]();
319
- if (assay.Identifier === assayIdentifier) {
320
- void (assay.Performers.push(person));
321
- }
322
- }
323
- }
324
- finally {
325
- (0, Util_js_1.disposeSafe)(enumerator_2);
326
- }
327
- }
328
- }
329
- finally {
330
- (0, Util_js_1.disposeSafe)(enumerator_1);
331
- }
332
- person.Comments = (0, Conversion_js_1.Person_removeSourceAssayComments)(person);
333
- if ((0, Seq_js_1.isEmpty)(sourceAssays)) {
334
- void (persons.push(person));
335
- }
336
- }
337
- }
338
- finally {
339
- (0, Util_js_1.disposeSafe)(enumerator);
340
- }
341
- }
342
- const assayIdentifiers = (0, Option_js_1.map)((arg_11) => {
343
- const collection = (0, List_js_1.map)((a_1) => a_1.Identifier, arg_11);
344
- return Array.from(collection);
345
- }, assays);
346
- return [new ArcTypes_js_1.ArcStudy(identifier, (0, Option_js_1.unwrap)((objectArg_5 = get$.Optional, objectArg_5.Field("title", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_6 = get$.Optional, objectArg_6.Field("description", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_7 = get$.Optional, objectArg_7.Field("submissionDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_8 = get$.Optional, objectArg_8.Field("publicReleaseDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((arg_21 = (0, Decode_fs_js_1.resizeArray)(Publication_js_1.ISAJson_decoder), (objectArg_9 = get$.Optional, objectArg_9.Field("publications", arg_21)))), (0, Option_js_1.unwrap)((persons.length === 0) ? undefined : persons), (0, Option_js_1.unwrap)((arg_23 = (0, Decode_fs_js_1.resizeArray)(OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_decoder), (objectArg_10 = get$.Optional, objectArg_10.Field("studyDesignDescriptors", arg_23)))), (0, Option_js_1.unwrap)(tables), undefined, (0, Option_js_1.unwrap)(assayIdentifiers), (0, Option_js_1.unwrap)((arg_25 = (0, Decode_fs_js_1.resizeArray)(Comment_js_1.ISAJson_decoder), (objectArg_11 = get$.Optional, objectArg_11.Field("comments", arg_25))))), (0, Option_js_1.defaultArg)(assays, (0, List_js_1.empty)())];
347
- });
@@ -1,217 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.decoder = exports.decoderV2Deprecated = void 0;
4
- exports.encoder = encoder;
5
- exports.decoderCompressedColumn = decoderCompressedColumn;
6
- exports.arrayi = arrayi;
7
- exports.encoderCompressed = encoderCompressed;
8
- exports.decoderCompressedV2Deprecated = decoderCompressedV2Deprecated;
9
- exports.decoderCompressed = decoderCompressed;
10
- const Util_js_1 = require("@fable-org/fable-library-js/Util.js");
11
- const CompositeCell_js_1 = require("./CompositeCell.js");
12
- const MapUtil_js_1 = require("@fable-org/fable-library-js/MapUtil.js");
13
- const Types_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Types.fs.js");
14
- const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
15
- const Encode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.js");
16
- const CompositeHeader_js_1 = require("./CompositeHeader.js");
17
- const Encode_js_1 = require("../Encode.js");
18
- const ArcTableAux_js_1 = require("../../Core/Table/ArcTableAux.js");
19
- const ArcTable_js_1 = require("../../Core/Table/ArcTable.js");
20
- const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
21
- const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
22
- const List_js_1 = require("@fable-org/fable-library-js/List.js");
23
- const MutableMap_js_1 = require("@fable-org/fable-library-js/MutableMap.js");
24
- const Map_js_1 = require("@fable-org/fable-library-js/Map.js");
25
- const Decode_js_1 = require("../Decode.js");
26
- const Result_js_1 = require("@fable-org/fable-library-js/Result.js");
27
- const CellTable_js_1 = require("./CellTable.js");
28
- const Array_js_1 = require("@fable-org/fable-library-js/Array.js");
29
- const StringTable_js_1 = require("../StringTable.js");
30
- function encoder(table) {
31
- const valueMap = table.Values.ValueMap;
32
- const cellEncoder = (hash) => (0, CompositeCell_js_1.encoder)((0, MapUtil_js_1.getItemFromDict)(valueMap, hash));
33
- const values = (0, Seq_js_1.toList)((0, Seq_js_1.delay)(() => {
34
- let value;
35
- return (0, Seq_js_1.append)((0, Seq_js_1.singleton)(["name", (value = table.Name, {
36
- Encode(helpers) {
37
- return helpers.encodeString(value);
38
- },
39
- })]), (0, Seq_js_1.delay)(() => (0, Seq_js_1.append)((table.Headers.length !== 0) ? (0, Seq_js_1.singleton)(["headers", (0, Encode_fs_js_1.list)((0, Seq_js_1.toList)((0, Seq_js_1.delay)(() => (0, Seq_js_1.map)(CompositeHeader_js_1.encoder, table.Headers))))]) : (0, Seq_js_1.empty)(), (0, Seq_js_1.delay)(() => ((table.Values.RowCount !== 0) ? (0, Seq_js_1.append)((0, Seq_js_1.singleton)(["columns", (0, Encode_js_1.intDictionary)((col) => {
40
- if (col.tag === /* Sparse */ 1) {
41
- return (0, Encode_js_1.intDictionary)(cellEncoder, col.fields[0]);
42
- }
43
- else {
44
- return cellEncoder(col.fields[0]);
45
- }
46
- }, table.Values.Columns)]), (0, Seq_js_1.delay)(() => {
47
- let value_1;
48
- return (0, Seq_js_1.singleton)(["rowCount", (value_1 = (table.RowCount | 0), {
49
- Encode(helpers_1) {
50
- return helpers_1.encodeSignedIntegralNumber(value_1);
51
- },
52
- })]);
53
- })) : (0, Seq_js_1.empty)())))));
54
- }));
55
- return {
56
- Encode(helpers_2) {
57
- const arg = (0, Seq_js_1.map)((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_2)], values);
58
- return helpers_2.encodeObject(arg);
59
- },
60
- };
61
- }
62
- exports.decoderV2Deprecated = (0, Decode_fs_js_1.object)((get$) => {
63
- let arg_1, objectArg, arg_3, objectArg_1, objectArg_2;
64
- let decodedHeader;
65
- const collection = (0, Option_js_1.defaultArg)((arg_1 = (0, Decode_fs_js_1.list)(CompositeHeader_js_1.decoder), (objectArg = get$.Optional, objectArg.Field("header", arg_1))), (0, List_js_1.empty)());
66
- decodedHeader = Array.from(collection);
67
- const decodedValues = new MutableMap_js_1.Dictionary((0, Option_js_1.defaultArg)((arg_3 = (0, Decode_fs_js_1.map$0027)((0, Decode_fs_js_1.tuple2)(Decode_fs_js_1.int, Decode_fs_js_1.int), CompositeCell_js_1.decoder), (objectArg_1 = get$.Optional, objectArg_1.Field("values", arg_3))), (0, Map_js_1.empty)({
68
- Compare: Util_js_1.compareArrays,
69
- })), {
70
- Equals: Util_js_1.equalArrays,
71
- GetHashCode: Util_js_1.arrayHash,
72
- });
73
- const t = ArcTable_js_1.ArcTable.create((objectArg_2 = get$.Required, objectArg_2.Field("name", Decode_fs_js_1.string)), decodedHeader, []);
74
- let enumerator = (0, Util_js_1.getEnumerator)(decodedValues);
75
- try {
76
- while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
77
- const activePatternResult = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
78
- t.SetCellAt(activePatternResult[0][0], activePatternResult[0][1], activePatternResult[1]);
79
- }
80
- }
81
- finally {
82
- (0, Util_js_1.disposeSafe)(enumerator);
83
- }
84
- return t;
85
- });
86
- exports.decoder = (() => {
87
- const valueMap = new Map([]);
88
- const cellDecoder = (0, Decode_fs_js_1.map)((cell) => (0, ArcTableAux_js_1.ensureCellHashInValueMap)(cell, valueMap), CompositeCell_js_1.decoder);
89
- const columnDecoder = (0, Decode_js_1.Decode_tryOneOf)((0, List_js_1.ofArray)([(0, Decode_fs_js_1.map)(ArcTableAux_js_1.ColumnValueRefs_Constant, cellDecoder), (0, Decode_fs_js_1.map)(ArcTableAux_js_1.ColumnValueRefs_Sparse, (0, Decode_js_1.Decode_intDictionary)(cellDecoder))]));
90
- const decoder_1 = (0, Decode_fs_js_1.object)((get$) => {
91
- let arg_1, objectArg, arg_3, objectArg_1, objectArg_2, objectArg_3;
92
- const decodedHeader = (0, Option_js_1.defaultArg)((arg_1 = (0, Decode_fs_js_1.resizeArray)(CompositeHeader_js_1.decoder), (objectArg = get$.Optional, objectArg.Field("headers", arg_1))), []);
93
- const values = new ArcTableAux_js_1.ArcTableValues((0, Option_js_1.defaultArg)((arg_3 = (0, Decode_js_1.Decode_dictionary)(Decode_fs_js_1.int, columnDecoder), (objectArg_1 = get$.Optional, objectArg_1.Field("columns", arg_3))), new Map([])), valueMap, (0, Option_js_1.defaultArg)((objectArg_2 = get$.Optional, objectArg_2.Field("rowCount", Decode_fs_js_1.int)), 0));
94
- return ArcTable_js_1.ArcTable.fromArcTableValues((objectArg_3 = get$.Required, objectArg_3.Field("name", Decode_fs_js_1.string)), decodedHeader, values);
95
- });
96
- return {
97
- Decode(helper, column) {
98
- return helper.hasProperty("values", column) ? exports.decoderV2Deprecated.Decode(helper, column) : decoder_1.Decode(helper, column);
99
- },
100
- };
101
- })();
102
- function decoderCompressedColumn(cellTable, table, columnIndex) {
103
- return {
104
- Decode(helper, column) {
105
- const matchValue = (0, Decode_fs_js_1.array)((0, CellTable_js_1.decodeCell)(cellTable)).Decode(helper, column);
106
- if (matchValue.tag === /* Error */ 1) {
107
- const err = matchValue.fields[0];
108
- const rangeDecoder = (0, Decode_fs_js_1.object)((get$) => {
109
- let from;
110
- const objectArg = get$.Required;
111
- from = objectArg.Field("f", Decode_fs_js_1.int);
112
- let to_;
113
- const objectArg_1 = get$.Required;
114
- to_ = objectArg_1.Field("t", Decode_fs_js_1.int);
115
- let value;
116
- const arg_5 = (0, CellTable_js_1.decodeCell)(cellTable);
117
- const objectArg_2 = get$.Required;
118
- value = objectArg_2.Field("v", arg_5);
119
- for (let i = from; i <= to_; i++) {
120
- (0, ArcTableAux_js_1.Unchecked_setCellAt)(columnIndex, i, value, table.Values);
121
- }
122
- });
123
- const matchValue_1 = (0, Decode_fs_js_1.array)(rangeDecoder).Decode(helper, column);
124
- return (matchValue_1.tag === /* Error */ 1) ? (0, Result_js_1.FSharpResult$2_Error)(matchValue_1.fields[0]) : (0, Result_js_1.FSharpResult$2_Ok)(undefined);
125
- }
126
- else {
127
- (0, Array_js_1.iterateIndexed)((r, cell) => {
128
- (0, ArcTableAux_js_1.Unchecked_setCellAt)(columnIndex, r, cell, table.Values);
129
- }, matchValue.fields[0]);
130
- return (0, Result_js_1.FSharpResult$2_Ok)(undefined);
131
- }
132
- },
133
- };
134
- }
135
- function arrayi(decoderi) {
136
- return {
137
- Decode(helpers, value) {
138
- if (helpers.isArray(value)) {
139
- let i = -1;
140
- const tokens = helpers.asArray(value);
141
- return (0, Array_js_1.fold)((acc, value_1) => {
142
- let tupledArg;
143
- i = ((i + 1) | 0);
144
- if (acc.tag === /* Ok */ 0) {
145
- const acc_1 = acc.fields[0];
146
- const matchValue = decoderi(i).Decode(helpers, value_1);
147
- if (matchValue.tag === /* Ok */ 0) {
148
- const value_2 = matchValue.fields[0];
149
- (0, Array_js_1.setItem)(acc_1, i, value_2);
150
- return (0, Result_js_1.FSharpResult$2_Ok)(acc_1);
151
- }
152
- else {
153
- return (0, Result_js_1.FSharpResult$2_Error)((tupledArg = matchValue.fields[0], (0, Decode_fs_js_1.Helpers_prependPath)((".[" + (0, Util_js_1.int32ToString)(i)) + "]", tupledArg[0], tupledArg[1])));
154
- }
155
- }
156
- else {
157
- return acc;
158
- }
159
- }, (0, Result_js_1.FSharpResult$2_Ok)((0, Array_js_1.fill)(new Array(tokens.length), 0, tokens.length, null)), tokens);
160
- }
161
- else {
162
- return (0, Result_js_1.FSharpResult$2_Error)(["", (0, Types_fs_js_1.ErrorReason$1_BadPrimitive)("an array", value)]);
163
- }
164
- },
165
- };
166
- }
167
- function encoderCompressed(stringTable, oaTable, cellTable, table) {
168
- const cellEncoder = (hash) => (0, CellTable_js_1.encodeCell)(cellTable, (0, MapUtil_js_1.getItemFromDict)(table.Values.ValueMap, hash));
169
- const values = (0, Seq_js_1.toList)((0, Seq_js_1.delay)(() => (0, Seq_js_1.append)((0, Seq_js_1.singleton)(["n", (0, StringTable_js_1.encodeString)(stringTable, table.Name)]), (0, Seq_js_1.delay)(() => (0, Seq_js_1.append)((table.Headers.length !== 0) ? (0, Seq_js_1.singleton)(["h", (0, Encode_fs_js_1.list)((0, Seq_js_1.toList)((0, Seq_js_1.delay)(() => (0, Seq_js_1.map)(CompositeHeader_js_1.encoder, table.Headers))))]) : (0, Seq_js_1.empty)(), (0, Seq_js_1.delay)(() => ((table.Values.RowCount !== 0) ? (0, Seq_js_1.append)((0, Seq_js_1.singleton)(["c", (0, Encode_js_1.intDictionary)((col) => {
170
- if (col.tag === /* Sparse */ 1) {
171
- return (0, Encode_js_1.intDictionary)(cellEncoder, col.fields[0]);
172
- }
173
- else {
174
- return cellEncoder(col.fields[0]);
175
- }
176
- }, table.Values.Columns)]), (0, Seq_js_1.delay)(() => {
177
- let value;
178
- return (0, Seq_js_1.singleton)(["r", (value = (table.RowCount | 0), {
179
- Encode(helpers) {
180
- return helpers.encodeSignedIntegralNumber(value);
181
- },
182
- })]);
183
- })) : (0, Seq_js_1.empty)())))))));
184
- return {
185
- Encode(helpers_1) {
186
- const arg = (0, Seq_js_1.map)((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_1)], values);
187
- return helpers_1.encodeObject(arg);
188
- },
189
- };
190
- }
191
- function decoderCompressedV2Deprecated(stringTable, oaTable, cellTable) {
192
- return (0, Decode_fs_js_1.object)((get$) => {
193
- let arg_1, objectArg, arg_3, objectArg_1, arg_5, objectArg_2;
194
- let decodedHeader;
195
- const collection = (0, Option_js_1.defaultArg)((arg_1 = (0, Decode_fs_js_1.list)(CompositeHeader_js_1.decoder), (objectArg = get$.Optional, objectArg.Field("h", arg_1))), (0, List_js_1.empty)());
196
- decodedHeader = Array.from(collection);
197
- const table = ArcTable_js_1.ArcTable.create((arg_3 = (0, StringTable_js_1.decodeString)(stringTable), (objectArg_1 = get$.Required, objectArg_1.Field("n", arg_3))), decodedHeader, []);
198
- (arg_5 = arrayi((columnIndex) => decoderCompressedColumn(cellTable, table, columnIndex)), (objectArg_2 = get$.Optional, objectArg_2.Field("c", arg_5)));
199
- return table;
200
- });
201
- }
202
- function decoderCompressed(stringTable, oaTable, cellTable) {
203
- const valueMap = new Map([]);
204
- const cellDecoder = (0, Decode_fs_js_1.map)((i) => (0, ArcTableAux_js_1.ensureCellHashInValueMap)((0, Array_js_1.item)(i, cellTable), valueMap), Decode_fs_js_1.int);
205
- const columnDecoder = (0, Decode_js_1.Decode_tryOneOf)((0, List_js_1.ofArray)([(0, Decode_fs_js_1.map)(ArcTableAux_js_1.ColumnValueRefs_Constant, cellDecoder), (0, Decode_fs_js_1.map)(ArcTableAux_js_1.ColumnValueRefs_Sparse, (0, Decode_js_1.Decode_intDictionary)(cellDecoder))]));
206
- const decoder_1 = (0, Decode_fs_js_1.object)((get$) => {
207
- let arg_1, objectArg, arg_3, objectArg_1, objectArg_2, arg_7, objectArg_3;
208
- const decodedHeader = (0, Option_js_1.defaultArg)((arg_1 = (0, Decode_fs_js_1.resizeArray)(CompositeHeader_js_1.decoder), (objectArg = get$.Optional, objectArg.Field("h", arg_1))), []);
209
- const values = new ArcTableAux_js_1.ArcTableValues((0, Option_js_1.defaultArg)((arg_3 = (0, Decode_js_1.Decode_dictionary)(Decode_fs_js_1.int, columnDecoder), (objectArg_1 = get$.Optional, objectArg_1.Field("c", arg_3))), new Map([])), valueMap, (0, Option_js_1.defaultArg)((objectArg_2 = get$.Optional, objectArg_2.Field("r", Decode_fs_js_1.int)), 0));
210
- return ArcTable_js_1.ArcTable.fromArcTableValues((arg_7 = (0, StringTable_js_1.decodeString)(stringTable), (objectArg_3 = get$.Required, objectArg_3.Field("n", arg_7))), decodedHeader, values);
211
- });
212
- return {
213
- Decode(helper, column) {
214
- return !helper.hasProperty("r", column) ? decoderCompressedV2Deprecated(stringTable, oaTable, cellTable).Decode(helper, column) : decoder_1.Decode(helper, column);
215
- },
216
- };
217
- }
@@ -1,58 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.arrayFromMap = arrayFromMap;
4
- exports.encoder = encoder;
5
- exports.decoder = decoder;
6
- exports.encodeCell = encodeCell;
7
- exports.decodeCell = decodeCell;
8
- const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
9
- const Collections_js_1 = require("../../Core/Helper/Collections.js");
10
- const Util_js_1 = require("@fable-org/fable-library-js/Util.js");
11
- const Array_js_1 = require("@fable-org/fable-library-js/Array.js");
12
- const CompositeCell_js_1 = require("./CompositeCell.js");
13
- const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
14
- const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
15
- const MapUtil_js_1 = require("@fable-org/fable-library-js/MapUtil.js");
16
- function arrayFromMap(otm) {
17
- return (0, Seq_js_1.toArray)((0, Seq_js_1.map)((kv_1) => kv_1[0], (0, Seq_js_1.sortBy)((kv) => kv[1], (0, Collections_js_1.Dictionary_items)(otm), {
18
- Compare: Util_js_1.comparePrimitives,
19
- })));
20
- }
21
- function encoder(stringTable, oaTable, ot) {
22
- const values = (0, Array_js_1.map)((cc) => (0, CompositeCell_js_1.encoderCompressed)(stringTable, oaTable, cc), ot);
23
- return {
24
- Encode(helpers) {
25
- const arg = (0, Array_js_1.map)((v) => v.Encode(helpers), values);
26
- return helpers.encodeArray(arg);
27
- },
28
- };
29
- }
30
- function decoder(stringTable, oaTable) {
31
- return (0, Decode_fs_js_1.array)((0, CompositeCell_js_1.decoderCompressed)(stringTable, oaTable));
32
- }
33
- function encodeCell(otm, cc) {
34
- const matchValue = (0, Collections_js_1.Dictionary_tryFind)(cc, otm);
35
- if (matchValue == null) {
36
- const i_1 = otm.size | 0;
37
- (0, MapUtil_js_1.addToDict)(otm, cc, i_1);
38
- return {
39
- Encode(helpers_1) {
40
- return helpers_1.encodeSignedIntegralNumber(i_1);
41
- },
42
- };
43
- }
44
- else {
45
- const i = (0, Option_js_1.value)(matchValue) | 0;
46
- return {
47
- Encode(helpers) {
48
- return helpers.encodeSignedIntegralNumber(i);
49
- },
50
- };
51
- }
52
- }
53
- function decodeCell(ot) {
54
- return (0, Decode_fs_js_1.object)((get$) => {
55
- const i = get$.Required.Raw(Decode_fs_js_1.int) | 0;
56
- return (0, Array_js_1.item)(i, ot).Copy();
57
- });
58
- }