@nfdi4plants/arctrl 3.0.0-beta.2 → 3.0.0-beta.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ts/__vite-browser-external-2447137e.js +4 -0
- package/dist/ts/__vite-browser-external-b3701507.cjs +1 -0
- package/dist/ts/arctrl.cjs.js +5691 -0
- package/dist/ts/arctrl.es.js +35562 -0
- package/dist/ts/arctrl.umd.js +5691 -0
- package/dist/ts/index.d.ts +61 -0
- package/dist/ts/index.d.ts.map +1 -0
- package/dist/ts/ts/ARC.d.ts +80 -0
- package/dist/ts/ts/ARC.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ARC.d.ts +7 -0
- package/dist/ts/ts/Contract/ARC.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ArcAssay.d.ts +12 -0
- package/dist/ts/ts/Contract/ArcAssay.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ArcInvestigation.d.ts +10 -0
- package/dist/ts/ts/Contract/ArcInvestigation.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ArcRun.d.ts +12 -0
- package/dist/ts/ts/Contract/ArcRun.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ArcStudy.d.ts +13 -0
- package/dist/ts/ts/Contract/ArcStudy.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ArcWorkflow.d.ts +12 -0
- package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map +1 -0
- package/dist/ts/ts/Contract/Contract.d.ts +39 -0
- package/dist/ts/ts/Contract/Contract.d.ts.map +1 -0
- package/dist/ts/ts/Contract/Datamap.d.ts +29 -0
- package/dist/ts/ts/Contract/Datamap.d.ts.map +1 -0
- package/dist/ts/ts/Contract/Git.d.ts +28 -0
- package/dist/ts/ts/Contract/Git.d.ts.map +1 -0
- package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts +12 -0
- package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts.map +1 -0
- package/dist/ts/ts/ContractIO/ContractIO.d.ts +11 -0
- package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -0
- package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts +44 -0
- package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts.map +1 -0
- package/dist/ts/ts/Conversion.d.ts +292 -0
- package/dist/ts/ts/Conversion.d.ts.map +1 -0
- package/dist/ts/ts/Core/ArcTypes.d.ts +620 -0
- package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -0
- package/dist/ts/ts/Core/Comment.d.ts +35 -0
- package/dist/ts/ts/Core/Comment.d.ts.map +1 -0
- package/dist/ts/ts/Core/CommentList.d.ts +28 -0
- package/dist/ts/ts/Core/CommentList.d.ts.map +1 -0
- package/dist/ts/ts/Core/Conversion.d.ts +215 -0
- package/dist/ts/ts/Core/Conversion.d.ts.map +1 -0
- package/dist/ts/ts/Core/Data.d.ts +49 -0
- package/dist/ts/ts/Core/Data.d.ts.map +1 -0
- package/dist/ts/ts/Core/DataContext.d.ts +47 -0
- package/dist/ts/ts/Core/DataContext.d.ts.map +1 -0
- package/dist/ts/ts/Core/DataFile.d.ts +27 -0
- package/dist/ts/ts/Core/DataFile.d.ts.map +1 -0
- package/dist/ts/ts/Core/DataMap.d.ts +52 -0
- package/dist/ts/ts/Core/DataMap.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/Collections.d.ts +61 -0
- package/dist/ts/ts/Core/Helper/Collections.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/HashCodes.d.ts +9 -0
- package/dist/ts/ts/Core/Helper/HashCodes.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/Identifier.d.ts +119 -0
- package/dist/ts/ts/Core/Helper/Identifier.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/ORCID.d.ts +7 -0
- package/dist/ts/ts/Core/Helper/ORCID.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/Regex.d.ts +194 -0
- package/dist/ts/ts/Core/Helper/Regex.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/SemVer.d.ts +20 -0
- package/dist/ts/ts/Core/Helper/SemVer.d.ts.map +1 -0
- package/dist/ts/ts/Core/Helper/Url.d.ts +10 -0
- package/dist/ts/ts/Core/Helper/Url.d.ts.map +1 -0
- package/dist/ts/ts/Core/IdentifierSetters.d.ts +7 -0
- package/dist/ts/ts/Core/IdentifierSetters.d.ts.map +1 -0
- package/dist/ts/ts/Core/OntologyAnnotation.d.ts +57 -0
- package/dist/ts/ts/Core/OntologyAnnotation.d.ts.map +1 -0
- package/dist/ts/ts/Core/OntologySourceReference.d.ts +31 -0
- package/dist/ts/ts/Core/OntologySourceReference.d.ts.map +1 -0
- package/dist/ts/ts/Core/Person.d.ts +56 -0
- package/dist/ts/ts/Core/Person.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/ColumnIndex.d.ts +79 -0
- package/dist/ts/ts/Core/Process/ColumnIndex.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Component.d.ts +65 -0
- package/dist/ts/ts/Core/Process/Component.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Factor.d.ts +44 -0
- package/dist/ts/ts/Core/Process/Factor.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/FactorValue.d.ts +44 -0
- package/dist/ts/ts/Core/Process/FactorValue.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Material.d.ts +27 -0
- package/dist/ts/ts/Core/Process/Material.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/MaterialAttribute.d.ts +53 -0
- package/dist/ts/ts/Core/Process/MaterialAttribute.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/MaterialAttributeValue.d.ts +55 -0
- package/dist/ts/ts/Core/Process/MaterialAttributeValue.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/MaterialType.d.ts +22 -0
- package/dist/ts/ts/Core/Process/MaterialType.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Process.d.ts +113 -0
- package/dist/ts/ts/Core/Process/Process.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/ProcessInput.d.ts +117 -0
- package/dist/ts/ts/Core/Process/ProcessInput.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/ProcessOutput.d.ts +106 -0
- package/dist/ts/ts/Core/Process/ProcessOutput.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/ProcessParameterValue.d.ts +40 -0
- package/dist/ts/ts/Core/Process/ProcessParameterValue.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/ProcessSequence.d.ts +89 -0
- package/dist/ts/ts/Core/Process/ProcessSequence.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Protocol.d.ts +141 -0
- package/dist/ts/ts/Core/Process/Protocol.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/ProtocolParameter.d.ts +32 -0
- package/dist/ts/ts/Core/Process/ProtocolParameter.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Sample.d.ts +31 -0
- package/dist/ts/ts/Core/Process/Sample.d.ts.map +1 -0
- package/dist/ts/ts/Core/Process/Source.d.ts +24 -0
- package/dist/ts/ts/Core/Process/Source.d.ts.map +1 -0
- package/dist/ts/ts/Core/Publication.d.ts +36 -0
- package/dist/ts/ts/Core/Publication.d.ts.map +1 -0
- package/dist/ts/ts/Core/Table/ArcTable.d.ts +137 -0
- package/dist/ts/ts/Core/Table/ArcTable.d.ts.map +1 -0
- package/dist/ts/ts/Core/Table/ArcTableAux.d.ts +154 -0
- package/dist/ts/ts/Core/Table/ArcTableAux.d.ts.map +1 -0
- package/dist/ts/ts/Core/Table/ArcTables.d.ts +91 -0
- package/dist/ts/ts/Core/Table/ArcTables.d.ts.map +1 -0
- package/dist/ts/ts/Core/Table/CompositeCell.d.ts +58 -0
- package/dist/ts/ts/Core/Table/CompositeCell.d.ts.map +1 -0
- package/dist/ts/ts/Core/Table/CompositeColumn.d.ts +19 -0
- package/dist/ts/ts/Core/Table/CompositeColumn.d.ts.map +1 -0
- package/dist/ts/ts/Core/Table/CompositeHeader.d.ts +130 -0
- package/dist/ts/ts/Core/Table/CompositeHeader.d.ts.map +1 -0
- package/dist/ts/ts/Core/Template.d.ts +69 -0
- package/dist/ts/ts/Core/Template.d.ts.map +1 -0
- package/dist/ts/ts/Core/Templates.d.ts +18 -0
- package/dist/ts/ts/Core/Templates.d.ts.map +1 -0
- package/dist/ts/ts/Core/URI.d.ts.map +1 -0
- package/dist/ts/ts/Core/Value.d.ts +41 -0
- package/dist/ts/ts/Core/Value.d.ts.map +1 -0
- package/dist/ts/ts/CrossAsync.d.ts +9 -0
- package/dist/ts/ts/CrossAsync.d.ts.map +1 -0
- package/dist/ts/ts/FileSystem/Commit.d.ts +13 -0
- package/dist/ts/ts/FileSystem/Commit.d.ts.map +1 -0
- package/dist/ts/ts/FileSystem/DefaultGitattributes.d.ts.map +1 -0
- package/dist/ts/ts/FileSystem/DefaultGitignore.d.ts.map +1 -0
- package/dist/ts/ts/FileSystem/FileSystem.d.ts +21 -0
- package/dist/ts/ts/FileSystem/FileSystem.d.ts.map +1 -0
- package/dist/ts/ts/FileSystem/FileSystemTree.d.ts +55 -0
- package/dist/ts/ts/FileSystem/FileSystemTree.d.ts.map +1 -0
- package/dist/ts/ts/FileSystem/Path.d.ts.map +1 -0
- package/dist/ts/ts/Json/Assay.d.ts +19 -0
- package/dist/ts/ts/Json/Assay.d.ts.map +1 -0
- package/dist/ts/ts/Json/Comment.d.ts +14 -0
- package/dist/ts/ts/Json/Comment.d.ts.map +1 -0
- package/dist/ts/ts/Json/Data.d.ts +17 -0
- package/dist/ts/ts/Json/Data.d.ts.map +1 -0
- package/dist/ts/ts/Json/DataFile.d.ts +7 -0
- package/dist/ts/ts/Json/DataFile.d.ts.map +1 -0
- package/dist/ts/ts/Json/DataMap/DataContext.d.ts +5 -0
- package/dist/ts/ts/Json/DataMap/DataContext.d.ts.map +1 -0
- package/dist/ts/ts/Json/DataMap/DataMap.d.ts +11 -0
- package/dist/ts/ts/Json/DataMap/DataMap.d.ts.map +1 -0
- package/dist/ts/ts/Json/Decode.d.ts +18 -0
- package/dist/ts/ts/Json/Decode.d.ts.map +1 -0
- package/dist/ts/ts/Json/Encode.d.ts +23 -0
- package/dist/ts/ts/Json/Encode.d.ts.map +1 -0
- package/dist/ts/ts/Json/IDTable.d.ts +5 -0
- package/dist/ts/ts/Json/IDTable.d.ts.map +1 -0
- package/dist/ts/ts/Json/Investigation.d.ts +20 -0
- package/dist/ts/ts/Json/Investigation.d.ts.map +1 -0
- package/dist/ts/ts/Json/OntologyAnnotation.d.ts +18 -0
- package/dist/ts/ts/Json/OntologyAnnotation.d.ts.map +1 -0
- package/dist/ts/ts/Json/OntologySourceReference.d.ts +12 -0
- package/dist/ts/ts/Json/OntologySourceReference.d.ts.map +1 -0
- package/dist/ts/ts/Json/Person.d.ts +22 -0
- package/dist/ts/ts/Json/Person.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/AssayMaterials.d.ts +7 -0
- package/dist/ts/ts/Json/Process/AssayMaterials.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/Component.d.ts +11 -0
- package/dist/ts/ts/Json/Process/Component.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/Factor.d.ts +8 -0
- package/dist/ts/ts/Json/Process/Factor.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/FactorValue.d.ts +11 -0
- package/dist/ts/ts/Json/Process/FactorValue.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/Material.d.ts +12 -0
- package/dist/ts/ts/Json/Process/Material.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/MaterialAttribute.d.ts +8 -0
- package/dist/ts/ts/Json/Process/MaterialAttribute.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/MaterialAttributeValue.d.ts +11 -0
- package/dist/ts/ts/Json/Process/MaterialAttributeValue.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/MaterialType.d.ts +7 -0
- package/dist/ts/ts/Json/Process/MaterialType.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/Process.d.ts +10 -0
- package/dist/ts/ts/Json/Process/Process.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/ProcessInput.d.ts +9 -0
- package/dist/ts/ts/Json/Process/ProcessInput.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/ProcessOutput.d.ts +9 -0
- package/dist/ts/ts/Json/Process/ProcessOutput.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/ProcessParameterValue.d.ts +11 -0
- package/dist/ts/ts/Json/Process/ProcessParameterValue.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/Protocol.d.ts +10 -0
- package/dist/ts/ts/Json/Process/Protocol.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts +8 -0
- package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/Sample.d.ts +15 -0
- package/dist/ts/ts/Json/Process/Sample.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/Source.d.ts +12 -0
- package/dist/ts/ts/Json/Process/Source.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/StudyMaterials.d.ts +7 -0
- package/dist/ts/ts/Json/Process/StudyMaterials.d.ts.map +1 -0
- package/dist/ts/ts/Json/Process/Value.d.ts +7 -0
- package/dist/ts/ts/Json/Process/Value.d.ts.map +1 -0
- package/dist/ts/ts/Json/PropertyValue.d.ts +9 -0
- package/dist/ts/ts/Json/PropertyValue.d.ts.map +1 -0
- package/dist/ts/ts/Json/Publication.d.ts +14 -0
- package/dist/ts/ts/Json/Publication.d.ts.map +1 -0
- package/dist/ts/ts/Json/ROCrate/LDContext.d.ts +5 -0
- package/dist/ts/ts/Json/ROCrate/LDContext.d.ts.map +1 -0
- package/dist/ts/ts/Json/ROCrate/LDGraph.d.ts +5 -0
- package/dist/ts/ts/Json/ROCrate/LDGraph.d.ts.map +1 -0
- package/dist/ts/ts/Json/ROCrate/LDNode.d.ts +13 -0
- package/dist/ts/ts/Json/ROCrate/LDNode.d.ts.map +1 -0
- package/dist/ts/ts/Json/ROCrate/LDRef.d.ts +5 -0
- package/dist/ts/ts/Json/ROCrate/LDRef.d.ts.map +1 -0
- package/dist/ts/ts/Json/ROCrate/LDValue.d.ts +7 -0
- package/dist/ts/ts/Json/ROCrate/LDValue.d.ts.map +1 -0
- package/dist/ts/ts/Json/StringTable.d.ts +9 -0
- package/dist/ts/ts/Json/StringTable.d.ts.map +1 -0
- package/dist/ts/ts/Json/Study.d.ts +26 -0
- package/dist/ts/ts/Json/Study.d.ts.map +1 -0
- package/dist/ts/ts/Json/Table/ArcTable.d.ts +15 -0
- package/dist/ts/ts/Json/Table/ArcTable.d.ts.map +1 -0
- package/dist/ts/ts/Json/Table/CellTable.d.ts +11 -0
- package/dist/ts/ts/Json/Table/CellTable.d.ts.map +1 -0
- package/dist/ts/ts/Json/Table/CompositeCell.d.ts +10 -0
- package/dist/ts/ts/Json/Table/CompositeCell.d.ts.map +1 -0
- package/dist/ts/ts/Json/Table/CompositeHeader.d.ts +5 -0
- package/dist/ts/ts/Json/Table/CompositeHeader.d.ts.map +1 -0
- package/dist/ts/ts/Json/Table/IOType.d.ts +5 -0
- package/dist/ts/ts/Json/Table/IOType.d.ts.map +1 -0
- package/dist/ts/ts/Json/Table/OATable.d.ts +10 -0
- package/dist/ts/ts/Json/Table/OATable.d.ts.map +1 -0
- package/dist/ts/ts/Json/Table/Templates.d.ts +15 -0
- package/dist/ts/ts/Json/Table/Templates.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_assay_context.d.ts +26 -0
- package/dist/ts/ts/Json/context/rocrate/isa_assay_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_comment_context.d.ts +16 -0
- package/dist/ts/ts/Json/context/rocrate/isa_comment_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_data_context.d.ts +18 -0
- package/dist/ts/ts/Json/context/rocrate/isa_data_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.d.ts +26 -0
- package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_material_context.d.ts +19 -0
- package/dist/ts/ts/Json/context/rocrate/isa_material_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.d.ts +17 -0
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.d.ts +19 -0
- package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_organization_context.d.ts +15 -0
- package/dist/ts/ts/Json/context/rocrate/isa_organization_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_person_context.d.ts +25 -0
- package/dist/ts/ts/Json/context/rocrate/isa_person_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_process_context.d.ts +23 -0
- package/dist/ts/ts/Json/context/rocrate/isa_process_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.d.ts +22 -0
- package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_publication_context.d.ts +19 -0
- package/dist/ts/ts/Json/context/rocrate/isa_publication_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_sample_context.d.ts +18 -0
- package/dist/ts/ts/Json/context/rocrate/isa_sample_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_source_context.d.ts +18 -0
- package/dist/ts/ts/Json/context/rocrate/isa_source_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/isa_study_context.d.ts +34 -0
- package/dist/ts/ts/Json/context/rocrate/isa_study_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/property_value_context.d.ts +3 -0
- package/dist/ts/ts/Json/context/rocrate/property_value_context.d.ts.map +1 -0
- package/dist/ts/ts/Json/context/rocrate/rocrate_context.d.ts +16 -0
- package/dist/ts/ts/Json/context/rocrate/rocrate_context.d.ts.map +1 -0
- package/dist/ts/ts/Json.d.ts +90 -0
- package/dist/ts/ts/Json.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/Assay.d.ts +19 -0
- package/dist/ts/ts/JsonIO/Assay.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/Investigation.d.ts +19 -0
- package/dist/ts/ts/JsonIO/Investigation.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/LDObject.d.ts +29 -0
- package/dist/ts/ts/JsonIO/LDObject.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/OntologyAnnotation.d.ts +16 -0
- package/dist/ts/ts/JsonIO/OntologyAnnotation.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/Study.d.ts +20 -0
- package/dist/ts/ts/JsonIO/Study.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/Table/Compression.d.ts +8 -0
- package/dist/ts/ts/JsonIO/Table/Compression.d.ts.map +1 -0
- package/dist/ts/ts/JsonIO/Table/Templates.d.ts +15 -0
- package/dist/ts/ts/JsonIO/Table/Templates.d.ts.map +1 -0
- package/dist/ts/ts/ROCrate/Generic/Comment.d.ts +21 -0
- package/dist/ts/ts/ROCrate/Generic/Comment.d.ts.map +1 -0
- package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts +92 -0
- package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts.map +1 -0
- package/dist/ts/ts/ROCrate/Generic/DefinedTerm.d.ts +21 -0
- package/dist/ts/ts/ROCrate/Generic/DefinedTerm.d.ts.map +1 -0
- package/dist/ts/ts/ROCrate/Generic/File.d.ts +35 -0
- package/dist/ts/ts/ROCrate/Generic/File.d.ts.map +1 -0
- package/dist/ts/ts/ROCrate/Generic/LabProcess.d.ts +43 -0
- package/dist/ts/ts/ROCrate/Generic/LabProcess.d.ts.map +1 -0
- package/dist/ts/ts/ROCrate/Generic/LabProtocol.d.ts +44 -0
- package/dist/ts/ts/ROCrate/Generic/LabProtocol.d.ts.map +1 -0
- package/dist/ts/ts/ROCrate/Generic/Organization.d.ts +17 -0
- package/dist/ts/ts/ROCrate/Generic/Organization.d.ts.map +1 -0
- package/dist/ts/ts/ROCrate/Generic/Person.d.ts +51 -0
- package/dist/ts/ts/ROCrate/Generic/Person.d.ts.map +1 -0
- package/dist/ts/ts/ROCrate/Generic/PostalAddress.d.ts +25 -0
- package/dist/ts/ts/ROCrate/Generic/PostalAddress.d.ts.map +1 -0
- package/dist/ts/ts/ROCrate/Generic/PropertyValue.d.ts +73 -0
- package/dist/ts/ts/ROCrate/Generic/PropertyValue.d.ts.map +1 -0
- package/dist/ts/ts/ROCrate/Generic/Sample.d.ts +30 -0
- package/dist/ts/ts/ROCrate/Generic/Sample.d.ts.map +1 -0
- package/dist/ts/ts/ROCrate/Generic/ScholarlyArticle.d.ts +34 -0
- package/dist/ts/ts/ROCrate/Generic/ScholarlyArticle.d.ts.map +1 -0
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- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Ranges/FsRangeColumn.fs.d.ts +0 -31
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Ranges/FsRangeColumn.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Ranges/FsRangeRow.fs.d.ts +0 -17
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Ranges/FsRangeRow.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Tables/FsTable.fs.d.ts +0 -71
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Tables/FsTable.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Tables/FsTableField.fs.d.ts +0 -89
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Tables/FsTableField.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Cell.fs.d.ts +0 -10
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Cell.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/FsExtensions.fs.d.ts +0 -19
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/FsExtensions.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Json.fs.d.ts +0 -15
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Json.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Table.fs.d.ts +0 -6
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Table.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Workbook.fs.d.ts +0 -5
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Workbook.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Worksheet.fs.d.ts +0 -7
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Worksheet.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Xlsx.fs.d.ts +0 -20
- package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Xlsx.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.d.ts +0 -105
- package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.d.ts +0 -26
- package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Types.fs.d.ts +0 -99
- package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Types.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/Thoth.Json.JavaScript.0.3.0/Decode.fs.d.ts +0 -7
- package/dist/ts/types/ts/fable_modules/Thoth.Json.JavaScript.0.3.0/Decode.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/Thoth.Json.JavaScript.0.3.0/Encode.fs.d.ts +0 -5
- package/dist/ts/types/ts/fable_modules/Thoth.Json.JavaScript.0.3.0/Encode.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Decode.fs.d.ts +0 -64
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Decode.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Encode.fs.d.ts +0 -24
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Encode.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Interop/JsInterop.fs.d.ts +0 -3
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Interop/JsInterop.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Persil.fs.d.ts +0 -12
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Persil.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Preprocessing.fs.d.ts +0 -10
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Preprocessing.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Reader.fs.d.ts +0 -6
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Reader.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Regex.fs.d.ts +0 -10
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Regex.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/RegexActivePatterns.fs.d.ts +0 -46
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/RegexActivePatterns.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Writer.fs.d.ts +0 -12
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Writer.fs.d.ts.map +0 -1
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.d.ts +0 -70
- package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.d.ts.map +0 -1
- /package/dist/ts/{types/ts → ts}/Core/URI.d.ts +0 -0
- /package/dist/ts/{types/ts → ts}/FileSystem/DefaultGitattributes.d.ts +0 -0
- /package/dist/ts/{types/ts → ts}/FileSystem/DefaultGitignore.d.ts +0 -0
- /package/dist/ts/{types/ts → ts}/FileSystem/Path.d.ts +0 -0
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.ISAJson_decoder = exports.ISAJson_allowedFields = exports.ROCrate_decoder = exports.decoder = void 0;
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exports.Helper_getAssayInformation = Helper_getAssayInformation;
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exports.encoder = encoder;
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exports.encoderCompressed = encoderCompressed;
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exports.decoderCompressed = decoderCompressed;
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exports.ROCrate_genID = ROCrate_genID;
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exports.ROCrate_encoder = ROCrate_encoder;
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exports.ISAJson_encoder = ISAJson_encoder;
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const Collections_js_1 = require("../Core/Helper/Collections.js");
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const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
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const List_js_1 = require("@fable-org/fable-library-js/List.js");
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const ArcTypes_js_1 = require("../Core/ArcTypes.js");
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const Encode_js_1 = require("./Encode.js");
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const Publication_js_1 = require("./Publication.js");
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const Person_js_1 = require("./Person.js");
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const OntologyAnnotation_js_1 = require("./OntologyAnnotation.js");
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const ArcTable_js_1 = require("./Table/ArcTable.js");
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const DataMap_js_1 = require("./DataMap/DataMap.js");
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const Comment_js_1 = require("./Comment.js");
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const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
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const Decode_fs_js_1 = require("../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
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const Util_js_1 = require("@fable-org/fable-library-js/Util.js");
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const String_js_1 = require("@fable-org/fable-library-js/String.js");
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const Identifier_js_1 = require("../Core/Helper/Identifier.js");
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const Conversion_js_1 = require("../Core/Conversion.js");
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const Encode_fs_js_1 = require("../fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.js");
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const Process_js_1 = require("./Process/Process.js");
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const Assay_js_1 = require("./Assay.js");
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const Data_js_1 = require("./Data.js");
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const ProcessSequence_js_1 = require("../Core/Process/ProcessSequence.js");
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const isa_study_context_js_1 = require("./context/rocrate/isa_study_context.js");
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const Factor_js_1 = require("./Process/Factor.js");
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const MaterialAttribute_js_1 = require("./Process/MaterialAttribute.js");
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const IDTable_js_1 = require("./IDTable.js");
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const Decode_js_1 = require("./Decode.js");
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/**
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* Get registered assays or get assays from `assays` if IsSome
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function Helper_getAssayInformation(assays, study) {
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if (assays != null) {
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return (0, Collections_js_1.ResizeArray_map)((assayId) => (0, Option_js_1.defaultArg)((0, List_js_1.tryFind)((a) => (a.Identifier === assayId), (0, Option_js_1.value)(assays)), ArcTypes_js_1.ArcAssay.init(assayId)), study.RegisteredAssayIdentifiers);
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}
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}
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}
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function encoder(study) {
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let value;
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const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["Identifier", (value = study.Identifier, {
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Encode(helpers) {
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return helpers.encodeString(value);
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})], (0, Encode_js_1.tryInclude)("Title", (value_1) => ({
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return helpers_1.encodeString(value_1);
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},
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},
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}), study.PublicReleaseDate), (0, Encode_js_1.tryIncludeSeq)("Publications", Publication_js_1.encoder, study.Publications), (0, Encode_js_1.tryIncludeSeq)("Contacts", Person_js_1.encoder, study.Contacts), (0, Encode_js_1.tryIncludeSeq)("StudyDesignDescriptors", OntologyAnnotation_js_1.OntologyAnnotation_encoder, study.StudyDesignDescriptors), (0, Encode_js_1.tryIncludeSeq)("Tables", ArcTable_js_1.encoder, study.Tables), (0, Encode_js_1.tryInclude)("DataMap", DataMap_js_1.encoder, study.DataMap), (0, Encode_js_1.tryIncludeSeq)("RegisteredAssayIdentifiers", (value_9) => ({
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};
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}
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exports.decoder = (0, Decode_fs_js_1.object)((get$) => {
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let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
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return new ArcTypes_js_1.ArcStudy((objectArg = get$.Required, objectArg.Field("Identifier", Decode_fs_js_1.string)), (0, Option_js_1.unwrap)((objectArg_1 = get$.Optional, objectArg_1.Field("Title", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_2 = get$.Optional, objectArg_2.Field("Description", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((arg_11 = (0, Decode_fs_js_1.resizeArray)(Publication_js_1.decoder), (objectArg_5 = get$.Optional, objectArg_5.Field("Publications", arg_11)))), (0, Option_js_1.unwrap)((arg_13 = (0, Decode_fs_js_1.resizeArray)(Person_js_1.decoder), (objectArg_6 = get$.Optional, objectArg_6.Field("Contacts", arg_13)))), (0, Option_js_1.unwrap)((arg_15 = (0, Decode_fs_js_1.resizeArray)(OntologyAnnotation_js_1.OntologyAnnotation_decoder), (objectArg_7 = get$.Optional, objectArg_7.Field("StudyDesignDescriptors", arg_15)))), (0, Option_js_1.unwrap)((arg_17 = (0, Decode_fs_js_1.resizeArray)(ArcTable_js_1.decoder), (objectArg_8 = get$.Optional, objectArg_8.Field("Tables", arg_17)))), (0, Option_js_1.unwrap)((objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", DataMap_js_1.decoder))), (0, Option_js_1.unwrap)((arg_21 = (0, Decode_fs_js_1.resizeArray)(Decode_fs_js_1.string), (objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredAssayIdentifiers", arg_21)))), (0, Option_js_1.unwrap)((arg_23 = (0, Decode_fs_js_1.resizeArray)(Comment_js_1.decoder), (objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23)))));
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});
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function encoderCompressed(stringTable, oaTable, cellTable, study) {
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const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["Identifier", (value = study.Identifier, {
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Encode(helpers) {
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return helpers.encodeString(value);
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}), study.PublicReleaseDate), (0, Encode_js_1.tryIncludeSeq)("Publications", Publication_js_1.encoder, study.Publications), (0, Encode_js_1.tryIncludeSeq)("Contacts", Person_js_1.encoder, study.Contacts), (0, Encode_js_1.tryIncludeSeq)("StudyDesignDescriptors", OntologyAnnotation_js_1.OntologyAnnotation_encoder, study.StudyDesignDescriptors), (0, Encode_js_1.tryIncludeSeq)("Tables", (table) => (0, ArcTable_js_1.encoderCompressed)(stringTable, oaTable, cellTable, table), study.Tables), (0, Encode_js_1.tryInclude)("DataMap", (dm) => (0, DataMap_js_1.encoderCompressed)(stringTable, oaTable, cellTable, dm), study.DataMap), (0, Encode_js_1.tryIncludeSeq)("RegisteredAssayIdentifiers", (value_9) => ({
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let objectArg, objectArg_1, objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10, arg_23, objectArg_11;
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return new ArcTypes_js_1.ArcStudy((objectArg = get$.Required, objectArg.Field("Identifier", Decode_fs_js_1.string)), (0, Option_js_1.unwrap)((objectArg_1 = get$.Optional, objectArg_1.Field("Title", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_2 = get$.Optional, objectArg_2.Field("Description", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_3 = get$.Optional, objectArg_3.Field("SubmissionDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_4 = get$.Optional, objectArg_4.Field("PublicReleaseDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((arg_11 = (0, Decode_fs_js_1.resizeArray)(Publication_js_1.decoder), (objectArg_5 = get$.Optional, objectArg_5.Field("Publications", arg_11)))), (0, Option_js_1.unwrap)((arg_13 = (0, Decode_fs_js_1.resizeArray)(Person_js_1.decoder), (objectArg_6 = get$.Optional, objectArg_6.Field("Contacts", arg_13)))), (0, Option_js_1.unwrap)((arg_15 = (0, Decode_fs_js_1.resizeArray)(OntologyAnnotation_js_1.OntologyAnnotation_decoder), (objectArg_7 = get$.Optional, objectArg_7.Field("StudyDesignDescriptors", arg_15)))), (0, Option_js_1.unwrap)((arg_17 = (0, Decode_fs_js_1.resizeArray)((0, ArcTable_js_1.decoderCompressed)(stringTable, oaTable, cellTable)), (objectArg_8 = get$.Optional, objectArg_8.Field("Tables", arg_17)))), (0, Option_js_1.unwrap)((arg_19 = (0, DataMap_js_1.decoderCompressed)(stringTable, oaTable, cellTable), (objectArg_9 = get$.Optional, objectArg_9.Field("DataMap", arg_19)))), (0, Option_js_1.unwrap)((arg_21 = (0, Decode_fs_js_1.resizeArray)(Decode_fs_js_1.string), (objectArg_10 = get$.Optional, objectArg_10.Field("RegisteredAssayIdentifiers", arg_21)))), (0, Option_js_1.unwrap)((arg_23 = (0, Decode_fs_js_1.resizeArray)(Comment_js_1.decoder), (objectArg_11 = get$.Optional, objectArg_11.Field("Comments", arg_23)))));
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});
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}
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129
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function ROCrate_genID(a) {
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const matchValue = a.Identifier;
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if (matchValue === "") {
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}
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else {
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return `studies/${(0, String_js_1.replace)(matchValue, " ", "_")}/`;
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}
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}
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function ROCrate_encoder(assays, s) {
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let value, value_3, studyName, studyName_1;
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const fileName = (0, Identifier_js_1.Study_tryFileNameFromIdentifier)(s.Identifier);
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const processes = (0, Conversion_js_1.ARCtrl_ArcTables__ArcTables_GetProcesses)(s);
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const assays_1 = Helper_getAssayInformation(assays, s);
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const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["@id", (value = ROCrate_genID(s), {
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Encode(helpers) {
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return helpers.encodeString(value);
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},
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})], ["@type", (0, Encode_fs_js_1.list)((0, List_js_1.singleton)({
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Encode(helpers_1) {
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return helpers_1.encodeString("Study");
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},
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}))], ["additionalType", {
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Encode(helpers_2) {
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return helpers_2.encodeString("Study");
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},
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}], ["identifier", (value_3 = s.Identifier, {
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Encode(helpers_3) {
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return helpers_3.encodeString(value_3);
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},
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})], (0, Encode_js_1.tryInclude)("filename", (value_4) => ({
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Encode(helpers_4) {
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return helpers_4.encodeString(value_4);
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},
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}), fileName), (0, Encode_js_1.tryInclude)("title", (value_6) => ({
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Encode(helpers_5) {
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return helpers_5.encodeString(value_6);
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},
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}), s.Title), (0, Encode_js_1.tryInclude)("description", (value_8) => ({
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Encode(helpers_6) {
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return helpers_6.encodeString(value_8);
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},
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}), s.Description), (0, Encode_js_1.tryIncludeSeq)("studyDesignDescriptors", OntologyAnnotation_js_1.OntologyAnnotation_ROCrate_encoderDefinedTerm, s.StudyDesignDescriptors), (0, Encode_js_1.tryInclude)("submissionDate", (value_10) => ({
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Encode(helpers_7) {
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return helpers_7.encodeString(value_10);
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},
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}), s.SubmissionDate), (0, Encode_js_1.tryInclude)("publicReleaseDate", (value_12) => ({
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Encode(helpers_8) {
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return helpers_8.encodeString(value_12);
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},
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}), s.PublicReleaseDate), (0, Encode_js_1.tryIncludeSeq)("publications", Publication_js_1.ROCrate_encoder, s.Publications), (0, Encode_js_1.tryIncludeSeq)("people", Person_js_1.ROCrate_encoder, s.Contacts), (0, Encode_js_1.tryIncludeList)("processSequence", (studyName = s.Identifier, (oa_3) => (0, Process_js_1.ROCrate_encoder)(studyName, undefined, oa_3)), processes), (0, Encode_js_1.tryIncludeSeq)("assays", (studyName_1 = s.Identifier, (a_1) => (0, Assay_js_1.ROCrate_encoder)(studyName_1, a_1)), assays_1), (0, Encode_js_1.tryIncludeList)("dataFiles", Data_js_1.ROCrate_encoder, (0, ProcessSequence_js_1.getData)(processes)), (0, Encode_js_1.tryIncludeSeq)("comments", Comment_js_1.ROCrate_encoder, s.Comments), ["@context", isa_study_context_js_1.context_jsonvalue]]));
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return {
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|
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Encode(helpers_9) {
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|
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const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_9)], values_1);
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|
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return helpers_9.encodeObject(arg);
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|
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},
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|
-
};
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|
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}
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|
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exports.ROCrate_decoder = (0, Decode_fs_js_1.object)((get$) => {
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|
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let objectArg, arg_6, objectArg_2, objectArg_3, objectArg_4, objectArg_5, objectArg_6, arg_16, objectArg_7, arg_18, objectArg_8, arg_20, objectArg_9, arg_22, objectArg_10;
|
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|
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const identifier = (0, Option_js_1.defaultArg)((0, Option_js_1.bind)(Identifier_js_1.Study_tryIdentifierFromFileName, (objectArg = get$.Optional, objectArg.Field("filename", Decode_fs_js_1.string))), (0, Identifier_js_1.createMissingIdentifier)());
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|
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let assays;
|
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191
|
-
const arg_3 = (0, Decode_fs_js_1.list)(Assay_js_1.ROCrate_decoder);
|
|
192
|
-
const objectArg_1 = get$.Optional;
|
|
193
|
-
assays = objectArg_1.Field("assays", arg_3);
|
|
194
|
-
const assayIdentifiers = (0, Option_js_1.map)((arg_4) => {
|
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195
|
-
const collection = (0, List_js_1.map)((a) => a.Identifier, arg_4);
|
|
196
|
-
return Array.from(collection);
|
|
197
|
-
}, assays);
|
|
198
|
-
const tables = (0, Option_js_1.map)((ps) => (0, Conversion_js_1.ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D)(ps).Tables, (arg_6 = (0, Decode_fs_js_1.list)(Process_js_1.ROCrate_decoder), (objectArg_2 = get$.Optional, objectArg_2.Field("processSequence", arg_6))));
|
|
199
|
-
return [new ArcTypes_js_1.ArcStudy(identifier, (0, Option_js_1.unwrap)((objectArg_3 = get$.Optional, objectArg_3.Field("title", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_4 = get$.Optional, objectArg_4.Field("description", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_5 = get$.Optional, objectArg_5.Field("submissionDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_6 = get$.Optional, objectArg_6.Field("publicReleaseDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((arg_16 = (0, Decode_fs_js_1.resizeArray)(Publication_js_1.ROCrate_decoder), (objectArg_7 = get$.Optional, objectArg_7.Field("publications", arg_16)))), (0, Option_js_1.unwrap)((arg_18 = (0, Decode_fs_js_1.resizeArray)(Person_js_1.ROCrate_decoder), (objectArg_8 = get$.Optional, objectArg_8.Field("people", arg_18)))), (0, Option_js_1.unwrap)((arg_20 = (0, Decode_fs_js_1.resizeArray)(OntologyAnnotation_js_1.OntologyAnnotation_ROCrate_decoderDefinedTerm), (objectArg_9 = get$.Optional, objectArg_9.Field("studyDesignDescriptors", arg_20)))), (0, Option_js_1.unwrap)(tables), undefined, (0, Option_js_1.unwrap)(assayIdentifiers), (0, Option_js_1.unwrap)((arg_22 = (0, Decode_fs_js_1.resizeArray)(Comment_js_1.ROCrate_decoder), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", arg_22))))), (0, Option_js_1.defaultArg)(assays, (0, List_js_1.empty)())];
|
|
200
|
-
});
|
|
201
|
-
/**
|
|
202
|
-
* If assays.IsSome then try to get registered assays from external list, otherwise try to access investigation or create empty defaults.
|
|
203
|
-
*/
|
|
204
|
-
function ISAJson_encoder(idMap, assays, s) {
|
|
205
|
-
const f = (s_1) => {
|
|
206
|
-
let studyName, value_6, value_8, studyName_1, studyName_2;
|
|
207
|
-
const study = s_1.Copy(true);
|
|
208
|
-
const fileName = (0, Identifier_js_1.Study_fileNameFromIdentifier)(study.Identifier);
|
|
209
|
-
let assays_1;
|
|
210
|
-
const n = [];
|
|
211
|
-
let enumerator = (0, Util_js_1.getEnumerator)(Helper_getAssayInformation(assays, study));
|
|
212
|
-
try {
|
|
213
|
-
while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
|
|
214
|
-
const a = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
|
|
215
|
-
const assay = a.Copy();
|
|
216
|
-
let enumerator_1 = (0, Util_js_1.getEnumerator)(assay.Performers);
|
|
217
|
-
try {
|
|
218
|
-
while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
|
|
219
|
-
const person_1 = (0, Conversion_js_1.Person_setSourceAssayComment)(enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"](), assay.Identifier);
|
|
220
|
-
void (study.Contacts.push(person_1));
|
|
221
|
-
}
|
|
222
|
-
}
|
|
223
|
-
finally {
|
|
224
|
-
(0, Util_js_1.disposeSafe)(enumerator_1);
|
|
225
|
-
}
|
|
226
|
-
assay.Performers = [];
|
|
227
|
-
void (n.push(assay));
|
|
228
|
-
}
|
|
229
|
-
}
|
|
230
|
-
finally {
|
|
231
|
-
(0, Util_js_1.disposeSafe)(enumerator);
|
|
232
|
-
}
|
|
233
|
-
assays_1 = n;
|
|
234
|
-
const processes = (0, Conversion_js_1.ARCtrl_ArcTables__ArcTables_GetProcesses)(study);
|
|
235
|
-
const encodedUnits = (0, Encode_js_1.tryIncludeList)("unitCategories", (oa) => (0, OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_encoder)(idMap, oa), (0, ProcessSequence_js_1.getUnits)(processes));
|
|
236
|
-
const encodedFactors = (0, Encode_js_1.tryIncludeList)("factors", (value_1) => (0, Factor_js_1.encoder)(idMap, value_1), (0, ProcessSequence_js_1.getFactors)(processes));
|
|
237
|
-
const encodedCharacteristics = (0, Encode_js_1.tryIncludeList)("characteristicCategories", (value_3) => (0, MaterialAttribute_js_1.encoder)(idMap, value_3), (0, ProcessSequence_js_1.getCharacteristics)(processes));
|
|
238
|
-
const encodedMaterials = (0, Encode_js_1.tryInclude)("materials", (ps) => (0, StudyMaterials_js_1.encoder)(idMap, ps), (0, Collections_js_1.Option_fromValueWithDefault)((0, List_js_1.empty)(), processes));
|
|
239
|
-
let encodedProtocols;
|
|
240
|
-
const value_5 = (0, ProcessSequence_js_1.getProtocols)(processes);
|
|
241
|
-
encodedProtocols = (0, Encode_js_1.tryIncludeList)("protocols", (studyName = s_1.Identifier, (oa_1) => (0, Protocol_js_1.ISAJson_encoder)(studyName, undefined, undefined, idMap, oa_1)), value_5);
|
|
242
|
-
const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["@id", (value_6 = ROCrate_genID(study), {
|
|
243
|
-
Encode(helpers) {
|
|
244
|
-
return helpers.encodeString(value_6);
|
|
245
|
-
},
|
|
246
|
-
})], ["filename", {
|
|
247
|
-
Encode(helpers_1) {
|
|
248
|
-
return helpers_1.encodeString(fileName);
|
|
249
|
-
},
|
|
250
|
-
}], ["identifier", (value_8 = study.Identifier, {
|
|
251
|
-
Encode(helpers_2) {
|
|
252
|
-
return helpers_2.encodeString(value_8);
|
|
253
|
-
},
|
|
254
|
-
})], (0, Encode_js_1.tryInclude)("title", (value_9) => ({
|
|
255
|
-
Encode(helpers_3) {
|
|
256
|
-
return helpers_3.encodeString(value_9);
|
|
257
|
-
},
|
|
258
|
-
}), study.Title), (0, Encode_js_1.tryInclude)("description", (value_11) => ({
|
|
259
|
-
Encode(helpers_4) {
|
|
260
|
-
return helpers_4.encodeString(value_11);
|
|
261
|
-
},
|
|
262
|
-
}), study.Description), (0, Encode_js_1.tryInclude)("submissionDate", (value_13) => ({
|
|
263
|
-
Encode(helpers_5) {
|
|
264
|
-
return helpers_5.encodeString(value_13);
|
|
265
|
-
},
|
|
266
|
-
}), study.SubmissionDate), (0, Encode_js_1.tryInclude)("publicReleaseDate", (value_15) => ({
|
|
267
|
-
Encode(helpers_6) {
|
|
268
|
-
return helpers_6.encodeString(value_15);
|
|
269
|
-
},
|
|
270
|
-
}), study.PublicReleaseDate), (0, Encode_js_1.tryIncludeSeq)("publications", (oa_2) => (0, Publication_js_1.ISAJson_encoder)(idMap, oa_2), study.Publications), (0, Encode_js_1.tryIncludeSeq)("people", (person_2) => (0, Person_js_1.ISAJson_encoder)(idMap, person_2), study.Contacts), (0, Encode_js_1.tryIncludeSeq)("studyDesignDescriptors", (oa_3) => (0, OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_encoder)(idMap, oa_3), study.StudyDesignDescriptors), encodedProtocols, encodedMaterials, (0, Encode_js_1.tryIncludeList)("processSequence", (studyName_1 = s_1.Identifier, (oa_4) => (0, Process_js_1.ISAJson_encoder)(studyName_1, undefined, idMap, oa_4)), processes), (0, Encode_js_1.tryIncludeSeq)("assays", (studyName_2 = s_1.Identifier, (a_2) => (0, Assay_js_1.ISAJson_encoder)(studyName_2, idMap, a_2)), assays_1), encodedFactors, encodedCharacteristics, encodedUnits, (0, Encode_js_1.tryIncludeSeq)("comments", (comment) => (0, Comment_js_1.ISAJson_encoder)(idMap, comment), study.Comments)]));
|
|
271
|
-
return {
|
|
272
|
-
Encode(helpers_7) {
|
|
273
|
-
const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_7)], values_1);
|
|
274
|
-
return helpers_7.encodeObject(arg);
|
|
275
|
-
},
|
|
276
|
-
};
|
|
277
|
-
};
|
|
278
|
-
if (idMap != null) {
|
|
279
|
-
return (0, IDTable_js_1.encode)(ROCrate_genID, f, s, (0, Option_js_1.value)(idMap));
|
|
280
|
-
}
|
|
281
|
-
else {
|
|
282
|
-
return f(s);
|
|
283
|
-
}
|
|
284
|
-
}
|
|
285
|
-
exports.ISAJson_allowedFields = (0, List_js_1.ofArray)(["@id", "filename", "identifier", "title", "description", "submissionDate", "publicReleaseDate", "publications", "people", "studyDesignDescriptors", "protocols", "materials", "assays", "factors", "characteristicCategories", "unitCategories", "processSequence", "comments", "@type", "@context"]);
|
|
286
|
-
exports.ISAJson_decoder = (0, Decode_js_1.Decode_objectNoAdditionalProperties)(exports.ISAJson_allowedFields, (get$) => {
|
|
287
|
-
let objectArg, arg_5, objectArg_2, objectArg_5, objectArg_6, objectArg_7, objectArg_8, arg_21, objectArg_9, arg_23, objectArg_10, arg_25, objectArg_11;
|
|
288
|
-
const identifier = (0, Option_js_1.defaultArgWith)((objectArg = get$.Optional, objectArg.Field("identifier", Decode_fs_js_1.string)), () => {
|
|
289
|
-
let objectArg_1;
|
|
290
|
-
return (0, Option_js_1.defaultArg)((0, Option_js_1.bind)(Identifier_js_1.Study_tryIdentifierFromFileName, (objectArg_1 = get$.Optional, objectArg_1.Field("filename", Decode_fs_js_1.string))), (0, Identifier_js_1.createMissingIdentifier)());
|
|
291
|
-
});
|
|
292
|
-
const tables = (0, Option_js_1.map)((arg_6) => {
|
|
293
|
-
const a = (0, Conversion_js_1.ARCtrl_ArcTables__ArcTables_fromProcesses_Static_62A3309D)(arg_6);
|
|
294
|
-
return a.Tables;
|
|
295
|
-
}, (arg_5 = (0, Decode_fs_js_1.list)(Process_js_1.ISAJson_decoder), (objectArg_2 = get$.Optional, objectArg_2.Field("processSequence", arg_5))));
|
|
296
|
-
let assays;
|
|
297
|
-
const arg_8 = (0, Decode_fs_js_1.list)(Assay_js_1.ISAJson_decoder);
|
|
298
|
-
const objectArg_3 = get$.Optional;
|
|
299
|
-
assays = objectArg_3.Field("assays", arg_8);
|
|
300
|
-
let personsRaw;
|
|
301
|
-
const arg_10 = (0, Decode_fs_js_1.resizeArray)(Person_js_1.ISAJson_decoder);
|
|
302
|
-
const objectArg_4 = get$.Optional;
|
|
303
|
-
personsRaw = objectArg_4.Field("people", arg_10);
|
|
304
|
-
const persons = [];
|
|
305
|
-
if (personsRaw != null) {
|
|
306
|
-
let enumerator = (0, Util_js_1.getEnumerator)((0, Option_js_1.value)(personsRaw));
|
|
307
|
-
try {
|
|
308
|
-
while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
|
|
309
|
-
const person = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
|
|
310
|
-
const sourceAssays = (0, Conversion_js_1.Person_getSourceAssayIdentifiersFromComments)(person);
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const enumerator_1 = (0, Util_js_1.getEnumerator)(sourceAssays);
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try {
|
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|
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while (enumerator_1["System.Collections.IEnumerator.MoveNext"]()) {
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const assayIdentifier = enumerator_1["System.Collections.Generic.IEnumerator`1.get_Current"]();
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const enumerator_2 = (0, Util_js_1.getEnumerator)((0, Option_js_1.value)(assays));
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while (enumerator_2["System.Collections.IEnumerator.MoveNext"]()) {
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318
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const assay = enumerator_2["System.Collections.Generic.IEnumerator`1.get_Current"]();
|
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if (assay.Identifier === assayIdentifier) {
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void (assay.Performers.push(person));
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}
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}
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}
|
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finally {
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(0, Util_js_1.disposeSafe)(enumerator_2);
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}
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}
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}
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finally {
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(0, Util_js_1.disposeSafe)(enumerator_1);
|
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}
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person.Comments = (0, Conversion_js_1.Person_removeSourceAssayComments)(person);
|
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|
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if ((0, Seq_js_1.isEmpty)(sourceAssays)) {
|
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void (persons.push(person));
|
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}
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}
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}
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finally {
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(0, Util_js_1.disposeSafe)(enumerator);
|
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}
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|
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}
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|
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const assayIdentifiers = (0, Option_js_1.map)((arg_11) => {
|
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const collection = (0, List_js_1.map)((a_1) => a_1.Identifier, arg_11);
|
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return Array.from(collection);
|
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|
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}, assays);
|
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346
|
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return [new ArcTypes_js_1.ArcStudy(identifier, (0, Option_js_1.unwrap)((objectArg_5 = get$.Optional, objectArg_5.Field("title", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_6 = get$.Optional, objectArg_6.Field("description", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_7 = get$.Optional, objectArg_7.Field("submissionDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((objectArg_8 = get$.Optional, objectArg_8.Field("publicReleaseDate", Decode_fs_js_1.string))), (0, Option_js_1.unwrap)((arg_21 = (0, Decode_fs_js_1.resizeArray)(Publication_js_1.ISAJson_decoder), (objectArg_9 = get$.Optional, objectArg_9.Field("publications", arg_21)))), (0, Option_js_1.unwrap)((persons.length === 0) ? undefined : persons), (0, Option_js_1.unwrap)((arg_23 = (0, Decode_fs_js_1.resizeArray)(OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_decoder), (objectArg_10 = get$.Optional, objectArg_10.Field("studyDesignDescriptors", arg_23)))), (0, Option_js_1.unwrap)(tables), undefined, (0, Option_js_1.unwrap)(assayIdentifiers), (0, Option_js_1.unwrap)((arg_25 = (0, Decode_fs_js_1.resizeArray)(Comment_js_1.ISAJson_decoder), (objectArg_11 = get$.Optional, objectArg_11.Field("comments", arg_25))))), (0, Option_js_1.defaultArg)(assays, (0, List_js_1.empty)())];
|
|
347
|
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});
|
|
@@ -1,217 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.decoder = exports.decoderV2Deprecated = void 0;
|
|
4
|
-
exports.encoder = encoder;
|
|
5
|
-
exports.decoderCompressedColumn = decoderCompressedColumn;
|
|
6
|
-
exports.arrayi = arrayi;
|
|
7
|
-
exports.encoderCompressed = encoderCompressed;
|
|
8
|
-
exports.decoderCompressedV2Deprecated = decoderCompressedV2Deprecated;
|
|
9
|
-
exports.decoderCompressed = decoderCompressed;
|
|
10
|
-
const Util_js_1 = require("@fable-org/fable-library-js/Util.js");
|
|
11
|
-
const CompositeCell_js_1 = require("./CompositeCell.js");
|
|
12
|
-
const MapUtil_js_1 = require("@fable-org/fable-library-js/MapUtil.js");
|
|
13
|
-
const Types_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Types.fs.js");
|
|
14
|
-
const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
|
|
15
|
-
const Encode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.js");
|
|
16
|
-
const CompositeHeader_js_1 = require("./CompositeHeader.js");
|
|
17
|
-
const Encode_js_1 = require("../Encode.js");
|
|
18
|
-
const ArcTableAux_js_1 = require("../../Core/Table/ArcTableAux.js");
|
|
19
|
-
const ArcTable_js_1 = require("../../Core/Table/ArcTable.js");
|
|
20
|
-
const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
|
|
21
|
-
const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
|
|
22
|
-
const List_js_1 = require("@fable-org/fable-library-js/List.js");
|
|
23
|
-
const MutableMap_js_1 = require("@fable-org/fable-library-js/MutableMap.js");
|
|
24
|
-
const Map_js_1 = require("@fable-org/fable-library-js/Map.js");
|
|
25
|
-
const Decode_js_1 = require("../Decode.js");
|
|
26
|
-
const Result_js_1 = require("@fable-org/fable-library-js/Result.js");
|
|
27
|
-
const CellTable_js_1 = require("./CellTable.js");
|
|
28
|
-
const Array_js_1 = require("@fable-org/fable-library-js/Array.js");
|
|
29
|
-
const StringTable_js_1 = require("../StringTable.js");
|
|
30
|
-
function encoder(table) {
|
|
31
|
-
const valueMap = table.Values.ValueMap;
|
|
32
|
-
const cellEncoder = (hash) => (0, CompositeCell_js_1.encoder)((0, MapUtil_js_1.getItemFromDict)(valueMap, hash));
|
|
33
|
-
const values = (0, Seq_js_1.toList)((0, Seq_js_1.delay)(() => {
|
|
34
|
-
let value;
|
|
35
|
-
return (0, Seq_js_1.append)((0, Seq_js_1.singleton)(["name", (value = table.Name, {
|
|
36
|
-
Encode(helpers) {
|
|
37
|
-
return helpers.encodeString(value);
|
|
38
|
-
},
|
|
39
|
-
})]), (0, Seq_js_1.delay)(() => (0, Seq_js_1.append)((table.Headers.length !== 0) ? (0, Seq_js_1.singleton)(["headers", (0, Encode_fs_js_1.list)((0, Seq_js_1.toList)((0, Seq_js_1.delay)(() => (0, Seq_js_1.map)(CompositeHeader_js_1.encoder, table.Headers))))]) : (0, Seq_js_1.empty)(), (0, Seq_js_1.delay)(() => ((table.Values.RowCount !== 0) ? (0, Seq_js_1.append)((0, Seq_js_1.singleton)(["columns", (0, Encode_js_1.intDictionary)((col) => {
|
|
40
|
-
if (col.tag === /* Sparse */ 1) {
|
|
41
|
-
return (0, Encode_js_1.intDictionary)(cellEncoder, col.fields[0]);
|
|
42
|
-
}
|
|
43
|
-
else {
|
|
44
|
-
return cellEncoder(col.fields[0]);
|
|
45
|
-
}
|
|
46
|
-
}, table.Values.Columns)]), (0, Seq_js_1.delay)(() => {
|
|
47
|
-
let value_1;
|
|
48
|
-
return (0, Seq_js_1.singleton)(["rowCount", (value_1 = (table.RowCount | 0), {
|
|
49
|
-
Encode(helpers_1) {
|
|
50
|
-
return helpers_1.encodeSignedIntegralNumber(value_1);
|
|
51
|
-
},
|
|
52
|
-
})]);
|
|
53
|
-
})) : (0, Seq_js_1.empty)())))));
|
|
54
|
-
}));
|
|
55
|
-
return {
|
|
56
|
-
Encode(helpers_2) {
|
|
57
|
-
const arg = (0, Seq_js_1.map)((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_2)], values);
|
|
58
|
-
return helpers_2.encodeObject(arg);
|
|
59
|
-
},
|
|
60
|
-
};
|
|
61
|
-
}
|
|
62
|
-
exports.decoderV2Deprecated = (0, Decode_fs_js_1.object)((get$) => {
|
|
63
|
-
let arg_1, objectArg, arg_3, objectArg_1, objectArg_2;
|
|
64
|
-
let decodedHeader;
|
|
65
|
-
const collection = (0, Option_js_1.defaultArg)((arg_1 = (0, Decode_fs_js_1.list)(CompositeHeader_js_1.decoder), (objectArg = get$.Optional, objectArg.Field("header", arg_1))), (0, List_js_1.empty)());
|
|
66
|
-
decodedHeader = Array.from(collection);
|
|
67
|
-
const decodedValues = new MutableMap_js_1.Dictionary((0, Option_js_1.defaultArg)((arg_3 = (0, Decode_fs_js_1.map$0027)((0, Decode_fs_js_1.tuple2)(Decode_fs_js_1.int, Decode_fs_js_1.int), CompositeCell_js_1.decoder), (objectArg_1 = get$.Optional, objectArg_1.Field("values", arg_3))), (0, Map_js_1.empty)({
|
|
68
|
-
Compare: Util_js_1.compareArrays,
|
|
69
|
-
})), {
|
|
70
|
-
Equals: Util_js_1.equalArrays,
|
|
71
|
-
GetHashCode: Util_js_1.arrayHash,
|
|
72
|
-
});
|
|
73
|
-
const t = ArcTable_js_1.ArcTable.create((objectArg_2 = get$.Required, objectArg_2.Field("name", Decode_fs_js_1.string)), decodedHeader, []);
|
|
74
|
-
let enumerator = (0, Util_js_1.getEnumerator)(decodedValues);
|
|
75
|
-
try {
|
|
76
|
-
while (enumerator["System.Collections.IEnumerator.MoveNext"]()) {
|
|
77
|
-
const activePatternResult = enumerator["System.Collections.Generic.IEnumerator`1.get_Current"]();
|
|
78
|
-
t.SetCellAt(activePatternResult[0][0], activePatternResult[0][1], activePatternResult[1]);
|
|
79
|
-
}
|
|
80
|
-
}
|
|
81
|
-
finally {
|
|
82
|
-
(0, Util_js_1.disposeSafe)(enumerator);
|
|
83
|
-
}
|
|
84
|
-
return t;
|
|
85
|
-
});
|
|
86
|
-
exports.decoder = (() => {
|
|
87
|
-
const valueMap = new Map([]);
|
|
88
|
-
const cellDecoder = (0, Decode_fs_js_1.map)((cell) => (0, ArcTableAux_js_1.ensureCellHashInValueMap)(cell, valueMap), CompositeCell_js_1.decoder);
|
|
89
|
-
const columnDecoder = (0, Decode_js_1.Decode_tryOneOf)((0, List_js_1.ofArray)([(0, Decode_fs_js_1.map)(ArcTableAux_js_1.ColumnValueRefs_Constant, cellDecoder), (0, Decode_fs_js_1.map)(ArcTableAux_js_1.ColumnValueRefs_Sparse, (0, Decode_js_1.Decode_intDictionary)(cellDecoder))]));
|
|
90
|
-
const decoder_1 = (0, Decode_fs_js_1.object)((get$) => {
|
|
91
|
-
let arg_1, objectArg, arg_3, objectArg_1, objectArg_2, objectArg_3;
|
|
92
|
-
const decodedHeader = (0, Option_js_1.defaultArg)((arg_1 = (0, Decode_fs_js_1.resizeArray)(CompositeHeader_js_1.decoder), (objectArg = get$.Optional, objectArg.Field("headers", arg_1))), []);
|
|
93
|
-
const values = new ArcTableAux_js_1.ArcTableValues((0, Option_js_1.defaultArg)((arg_3 = (0, Decode_js_1.Decode_dictionary)(Decode_fs_js_1.int, columnDecoder), (objectArg_1 = get$.Optional, objectArg_1.Field("columns", arg_3))), new Map([])), valueMap, (0, Option_js_1.defaultArg)((objectArg_2 = get$.Optional, objectArg_2.Field("rowCount", Decode_fs_js_1.int)), 0));
|
|
94
|
-
return ArcTable_js_1.ArcTable.fromArcTableValues((objectArg_3 = get$.Required, objectArg_3.Field("name", Decode_fs_js_1.string)), decodedHeader, values);
|
|
95
|
-
});
|
|
96
|
-
return {
|
|
97
|
-
Decode(helper, column) {
|
|
98
|
-
return helper.hasProperty("values", column) ? exports.decoderV2Deprecated.Decode(helper, column) : decoder_1.Decode(helper, column);
|
|
99
|
-
},
|
|
100
|
-
};
|
|
101
|
-
})();
|
|
102
|
-
function decoderCompressedColumn(cellTable, table, columnIndex) {
|
|
103
|
-
return {
|
|
104
|
-
Decode(helper, column) {
|
|
105
|
-
const matchValue = (0, Decode_fs_js_1.array)((0, CellTable_js_1.decodeCell)(cellTable)).Decode(helper, column);
|
|
106
|
-
if (matchValue.tag === /* Error */ 1) {
|
|
107
|
-
const err = matchValue.fields[0];
|
|
108
|
-
const rangeDecoder = (0, Decode_fs_js_1.object)((get$) => {
|
|
109
|
-
let from;
|
|
110
|
-
const objectArg = get$.Required;
|
|
111
|
-
from = objectArg.Field("f", Decode_fs_js_1.int);
|
|
112
|
-
let to_;
|
|
113
|
-
const objectArg_1 = get$.Required;
|
|
114
|
-
to_ = objectArg_1.Field("t", Decode_fs_js_1.int);
|
|
115
|
-
let value;
|
|
116
|
-
const arg_5 = (0, CellTable_js_1.decodeCell)(cellTable);
|
|
117
|
-
const objectArg_2 = get$.Required;
|
|
118
|
-
value = objectArg_2.Field("v", arg_5);
|
|
119
|
-
for (let i = from; i <= to_; i++) {
|
|
120
|
-
(0, ArcTableAux_js_1.Unchecked_setCellAt)(columnIndex, i, value, table.Values);
|
|
121
|
-
}
|
|
122
|
-
});
|
|
123
|
-
const matchValue_1 = (0, Decode_fs_js_1.array)(rangeDecoder).Decode(helper, column);
|
|
124
|
-
return (matchValue_1.tag === /* Error */ 1) ? (0, Result_js_1.FSharpResult$2_Error)(matchValue_1.fields[0]) : (0, Result_js_1.FSharpResult$2_Ok)(undefined);
|
|
125
|
-
}
|
|
126
|
-
else {
|
|
127
|
-
(0, Array_js_1.iterateIndexed)((r, cell) => {
|
|
128
|
-
(0, ArcTableAux_js_1.Unchecked_setCellAt)(columnIndex, r, cell, table.Values);
|
|
129
|
-
}, matchValue.fields[0]);
|
|
130
|
-
return (0, Result_js_1.FSharpResult$2_Ok)(undefined);
|
|
131
|
-
}
|
|
132
|
-
},
|
|
133
|
-
};
|
|
134
|
-
}
|
|
135
|
-
function arrayi(decoderi) {
|
|
136
|
-
return {
|
|
137
|
-
Decode(helpers, value) {
|
|
138
|
-
if (helpers.isArray(value)) {
|
|
139
|
-
let i = -1;
|
|
140
|
-
const tokens = helpers.asArray(value);
|
|
141
|
-
return (0, Array_js_1.fold)((acc, value_1) => {
|
|
142
|
-
let tupledArg;
|
|
143
|
-
i = ((i + 1) | 0);
|
|
144
|
-
if (acc.tag === /* Ok */ 0) {
|
|
145
|
-
const acc_1 = acc.fields[0];
|
|
146
|
-
const matchValue = decoderi(i).Decode(helpers, value_1);
|
|
147
|
-
if (matchValue.tag === /* Ok */ 0) {
|
|
148
|
-
const value_2 = matchValue.fields[0];
|
|
149
|
-
(0, Array_js_1.setItem)(acc_1, i, value_2);
|
|
150
|
-
return (0, Result_js_1.FSharpResult$2_Ok)(acc_1);
|
|
151
|
-
}
|
|
152
|
-
else {
|
|
153
|
-
return (0, Result_js_1.FSharpResult$2_Error)((tupledArg = matchValue.fields[0], (0, Decode_fs_js_1.Helpers_prependPath)((".[" + (0, Util_js_1.int32ToString)(i)) + "]", tupledArg[0], tupledArg[1])));
|
|
154
|
-
}
|
|
155
|
-
}
|
|
156
|
-
else {
|
|
157
|
-
return acc;
|
|
158
|
-
}
|
|
159
|
-
}, (0, Result_js_1.FSharpResult$2_Ok)((0, Array_js_1.fill)(new Array(tokens.length), 0, tokens.length, null)), tokens);
|
|
160
|
-
}
|
|
161
|
-
else {
|
|
162
|
-
return (0, Result_js_1.FSharpResult$2_Error)(["", (0, Types_fs_js_1.ErrorReason$1_BadPrimitive)("an array", value)]);
|
|
163
|
-
}
|
|
164
|
-
},
|
|
165
|
-
};
|
|
166
|
-
}
|
|
167
|
-
function encoderCompressed(stringTable, oaTable, cellTable, table) {
|
|
168
|
-
const cellEncoder = (hash) => (0, CellTable_js_1.encodeCell)(cellTable, (0, MapUtil_js_1.getItemFromDict)(table.Values.ValueMap, hash));
|
|
169
|
-
const values = (0, Seq_js_1.toList)((0, Seq_js_1.delay)(() => (0, Seq_js_1.append)((0, Seq_js_1.singleton)(["n", (0, StringTable_js_1.encodeString)(stringTable, table.Name)]), (0, Seq_js_1.delay)(() => (0, Seq_js_1.append)((table.Headers.length !== 0) ? (0, Seq_js_1.singleton)(["h", (0, Encode_fs_js_1.list)((0, Seq_js_1.toList)((0, Seq_js_1.delay)(() => (0, Seq_js_1.map)(CompositeHeader_js_1.encoder, table.Headers))))]) : (0, Seq_js_1.empty)(), (0, Seq_js_1.delay)(() => ((table.Values.RowCount !== 0) ? (0, Seq_js_1.append)((0, Seq_js_1.singleton)(["c", (0, Encode_js_1.intDictionary)((col) => {
|
|
170
|
-
if (col.tag === /* Sparse */ 1) {
|
|
171
|
-
return (0, Encode_js_1.intDictionary)(cellEncoder, col.fields[0]);
|
|
172
|
-
}
|
|
173
|
-
else {
|
|
174
|
-
return cellEncoder(col.fields[0]);
|
|
175
|
-
}
|
|
176
|
-
}, table.Values.Columns)]), (0, Seq_js_1.delay)(() => {
|
|
177
|
-
let value;
|
|
178
|
-
return (0, Seq_js_1.singleton)(["r", (value = (table.RowCount | 0), {
|
|
179
|
-
Encode(helpers) {
|
|
180
|
-
return helpers.encodeSignedIntegralNumber(value);
|
|
181
|
-
},
|
|
182
|
-
})]);
|
|
183
|
-
})) : (0, Seq_js_1.empty)())))))));
|
|
184
|
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return {
|
|
185
|
-
Encode(helpers_1) {
|
|
186
|
-
const arg = (0, Seq_js_1.map)((tupledArg) => [tupledArg[0], tupledArg[1].Encode(helpers_1)], values);
|
|
187
|
-
return helpers_1.encodeObject(arg);
|
|
188
|
-
},
|
|
189
|
-
};
|
|
190
|
-
}
|
|
191
|
-
function decoderCompressedV2Deprecated(stringTable, oaTable, cellTable) {
|
|
192
|
-
return (0, Decode_fs_js_1.object)((get$) => {
|
|
193
|
-
let arg_1, objectArg, arg_3, objectArg_1, arg_5, objectArg_2;
|
|
194
|
-
let decodedHeader;
|
|
195
|
-
const collection = (0, Option_js_1.defaultArg)((arg_1 = (0, Decode_fs_js_1.list)(CompositeHeader_js_1.decoder), (objectArg = get$.Optional, objectArg.Field("h", arg_1))), (0, List_js_1.empty)());
|
|
196
|
-
decodedHeader = Array.from(collection);
|
|
197
|
-
const table = ArcTable_js_1.ArcTable.create((arg_3 = (0, StringTable_js_1.decodeString)(stringTable), (objectArg_1 = get$.Required, objectArg_1.Field("n", arg_3))), decodedHeader, []);
|
|
198
|
-
(arg_5 = arrayi((columnIndex) => decoderCompressedColumn(cellTable, table, columnIndex)), (objectArg_2 = get$.Optional, objectArg_2.Field("c", arg_5)));
|
|
199
|
-
return table;
|
|
200
|
-
});
|
|
201
|
-
}
|
|
202
|
-
function decoderCompressed(stringTable, oaTable, cellTable) {
|
|
203
|
-
const valueMap = new Map([]);
|
|
204
|
-
const cellDecoder = (0, Decode_fs_js_1.map)((i) => (0, ArcTableAux_js_1.ensureCellHashInValueMap)((0, Array_js_1.item)(i, cellTable), valueMap), Decode_fs_js_1.int);
|
|
205
|
-
const columnDecoder = (0, Decode_js_1.Decode_tryOneOf)((0, List_js_1.ofArray)([(0, Decode_fs_js_1.map)(ArcTableAux_js_1.ColumnValueRefs_Constant, cellDecoder), (0, Decode_fs_js_1.map)(ArcTableAux_js_1.ColumnValueRefs_Sparse, (0, Decode_js_1.Decode_intDictionary)(cellDecoder))]));
|
|
206
|
-
const decoder_1 = (0, Decode_fs_js_1.object)((get$) => {
|
|
207
|
-
let arg_1, objectArg, arg_3, objectArg_1, objectArg_2, arg_7, objectArg_3;
|
|
208
|
-
const decodedHeader = (0, Option_js_1.defaultArg)((arg_1 = (0, Decode_fs_js_1.resizeArray)(CompositeHeader_js_1.decoder), (objectArg = get$.Optional, objectArg.Field("h", arg_1))), []);
|
|
209
|
-
const values = new ArcTableAux_js_1.ArcTableValues((0, Option_js_1.defaultArg)((arg_3 = (0, Decode_js_1.Decode_dictionary)(Decode_fs_js_1.int, columnDecoder), (objectArg_1 = get$.Optional, objectArg_1.Field("c", arg_3))), new Map([])), valueMap, (0, Option_js_1.defaultArg)((objectArg_2 = get$.Optional, objectArg_2.Field("r", Decode_fs_js_1.int)), 0));
|
|
210
|
-
return ArcTable_js_1.ArcTable.fromArcTableValues((arg_7 = (0, StringTable_js_1.decodeString)(stringTable), (objectArg_3 = get$.Required, objectArg_3.Field("n", arg_7))), decodedHeader, values);
|
|
211
|
-
});
|
|
212
|
-
return {
|
|
213
|
-
Decode(helper, column) {
|
|
214
|
-
return !helper.hasProperty("r", column) ? decoderCompressedV2Deprecated(stringTable, oaTable, cellTable).Decode(helper, column) : decoder_1.Decode(helper, column);
|
|
215
|
-
},
|
|
216
|
-
};
|
|
217
|
-
}
|
|
@@ -1,58 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.arrayFromMap = arrayFromMap;
|
|
4
|
-
exports.encoder = encoder;
|
|
5
|
-
exports.decoder = decoder;
|
|
6
|
-
exports.encodeCell = encodeCell;
|
|
7
|
-
exports.decodeCell = decodeCell;
|
|
8
|
-
const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
|
|
9
|
-
const Collections_js_1 = require("../../Core/Helper/Collections.js");
|
|
10
|
-
const Util_js_1 = require("@fable-org/fable-library-js/Util.js");
|
|
11
|
-
const Array_js_1 = require("@fable-org/fable-library-js/Array.js");
|
|
12
|
-
const CompositeCell_js_1 = require("./CompositeCell.js");
|
|
13
|
-
const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
|
|
14
|
-
const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
|
|
15
|
-
const MapUtil_js_1 = require("@fable-org/fable-library-js/MapUtil.js");
|
|
16
|
-
function arrayFromMap(otm) {
|
|
17
|
-
return (0, Seq_js_1.toArray)((0, Seq_js_1.map)((kv_1) => kv_1[0], (0, Seq_js_1.sortBy)((kv) => kv[1], (0, Collections_js_1.Dictionary_items)(otm), {
|
|
18
|
-
Compare: Util_js_1.comparePrimitives,
|
|
19
|
-
})));
|
|
20
|
-
}
|
|
21
|
-
function encoder(stringTable, oaTable, ot) {
|
|
22
|
-
const values = (0, Array_js_1.map)((cc) => (0, CompositeCell_js_1.encoderCompressed)(stringTable, oaTable, cc), ot);
|
|
23
|
-
return {
|
|
24
|
-
Encode(helpers) {
|
|
25
|
-
const arg = (0, Array_js_1.map)((v) => v.Encode(helpers), values);
|
|
26
|
-
return helpers.encodeArray(arg);
|
|
27
|
-
},
|
|
28
|
-
};
|
|
29
|
-
}
|
|
30
|
-
function decoder(stringTable, oaTable) {
|
|
31
|
-
return (0, Decode_fs_js_1.array)((0, CompositeCell_js_1.decoderCompressed)(stringTable, oaTable));
|
|
32
|
-
}
|
|
33
|
-
function encodeCell(otm, cc) {
|
|
34
|
-
const matchValue = (0, Collections_js_1.Dictionary_tryFind)(cc, otm);
|
|
35
|
-
if (matchValue == null) {
|
|
36
|
-
const i_1 = otm.size | 0;
|
|
37
|
-
(0, MapUtil_js_1.addToDict)(otm, cc, i_1);
|
|
38
|
-
return {
|
|
39
|
-
Encode(helpers_1) {
|
|
40
|
-
return helpers_1.encodeSignedIntegralNumber(i_1);
|
|
41
|
-
},
|
|
42
|
-
};
|
|
43
|
-
}
|
|
44
|
-
else {
|
|
45
|
-
const i = (0, Option_js_1.value)(matchValue) | 0;
|
|
46
|
-
return {
|
|
47
|
-
Encode(helpers) {
|
|
48
|
-
return helpers.encodeSignedIntegralNumber(i);
|
|
49
|
-
},
|
|
50
|
-
};
|
|
51
|
-
}
|
|
52
|
-
}
|
|
53
|
-
function decodeCell(ot) {
|
|
54
|
-
return (0, Decode_fs_js_1.object)((get$) => {
|
|
55
|
-
const i = get$.Required.Raw(Decode_fs_js_1.int) | 0;
|
|
56
|
-
return (0, Array_js_1.item)(i, ot).Copy();
|
|
57
|
-
});
|
|
58
|
-
}
|