@nfdi4plants/arctrl 3.0.0-beta.2 → 3.0.0-beta.3

package/dist/ts/cjs/ts/Json/Process/Material.js

@@ -1,120 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ISAJson_decoder = exports.ISAJson_allowedFields = exports.ROCrate_decoder = void 0;
-exports.ROCrate_genID = ROCrate_genID;
-exports.ROCrate_encoder = ROCrate_encoder;
-exports.ISAJson_encoder = ISAJson_encoder;
-const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
-const String_js_1 = require("@fable-org/fable-library-js/String.js");
-const Material_js_1 = require("../../Core/Process/Material.js");
-const List_js_1 = require("@fable-org/fable-library-js/List.js");
-const Encode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.js");
-const Encode_js_1 = require("../Encode.js");
-const MaterialType_js_1 = require("./MaterialType.js");
-const MaterialAttributeValue_js_1 = require("./MaterialAttributeValue.js");
-const isa_material_context_js_1 = require("../context/rocrate/isa_material_context.js");
-const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
-const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
-const Decode_js_1 = require("../Decode.js");
-const IDTable_js_1 = require("../IDTable.js");
-function ROCrate_genID(m) {
-    const matchValue = m.ID;
-    if (matchValue == null) {
-        const matchValue_1 = m.Name;
-        if (matchValue_1 == null) {
-            return "#EmptyMaterial";
-        }
-        else {
-            return "#Material_" + (0, String_js_1.replace)((0, Option_js_1.value)(matchValue_1), " ", "_");
-        }
-    }
-    else {
-        return (0, Option_js_1.value)(matchValue);
-    }
-}
-function ROCrate_encoder(oa) {
-    let value;
-    const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["@id", (value = ROCrate_genID(oa), {
-                Encode(helpers) {
-                    return helpers.encodeString(value);
-                },
-            })], ["@type", (0, Encode_fs_js_1.list)((0, List_js_1.singleton)({
-                Encode(helpers_1) {
-                    return helpers_1.encodeString("Material");
-                },
-            }))], ["additionalType", {
-                Encode(helpers_2) {
-                    return helpers_2.encodeString("Material");
-                },
-            }], (0, Encode_js_1.tryInclude)("name", (value_3) => ({
-            Encode(helpers_3) {
-                return helpers_3.encodeString(value_3);
-            },
-        }), oa.Name), (0, Encode_js_1.tryInclude)("type", MaterialType_js_1.ROCrate_encoder, oa.MaterialType), (0, Encode_js_1.tryIncludeListOpt)("characteristics", MaterialAttributeValue_js_1.ROCrate_encoder, oa.Characteristics), (0, Encode_js_1.tryIncludeListOpt)("derivesFrom", ROCrate_encoder, oa.DerivesFrom), ["@context", isa_material_context_js_1.context_jsonvalue]]));
-    return {
-        Encode(helpers_4) {
-            const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_4)], values_1);
-            return helpers_4.encodeObject(arg);
-        },
-    };
-}
-exports.ROCrate_decoder = (() => {
-    const decode = () => (0, Decode_fs_js_1.object)((get$) => {
-        let objectArg_2, objectArg_3, objectArg_4, arg_11, objectArg_5, arg_13, objectArg_6;
-        let matchValue;
-        const objectArg = get$.Optional;
-        matchValue = objectArg.Field("additionalType", Decode_js_1.Decode_uri);
-        let matchResult;
-        if (matchValue == null) {
-            matchResult = 0;
-        }
-        else if ((0, Option_js_1.value)(matchValue) === "Material") {
-            matchResult = 0;
-        }
-        else {
-            matchResult = 1;
-        }
-        switch (matchResult) {
-            case 1: {
-                const objectArg_1 = get$.Required;
-                objectArg_1.Field("FailBecauseNotSample", Decode_fs_js_1.unit);
-                break;
-            }
-        }
-        return new Material_js_1.Material((objectArg_2 = get$.Optional, objectArg_2.Field("@id", Decode_js_1.Decode_uri)), (objectArg_3 = get$.Optional, objectArg_3.Field("name", Decode_fs_js_1.string)), (objectArg_4 = get$.Optional, objectArg_4.Field("type", MaterialType_js_1.ROCrate_decoder)), (arg_11 = (0, Decode_fs_js_1.list)(MaterialAttributeValue_js_1.ROCrate_decoder), (objectArg_5 = get$.Optional, objectArg_5.Field("characteristics", arg_11))), (arg_13 = (0, Decode_fs_js_1.list)(decode()), (objectArg_6 = get$.Optional, objectArg_6.Field("derivesFrom", arg_13))));
-    });
-    return decode();
-})();
-function ISAJson_encoder(idMap, c) {
-    const f = (oa) => {
-        const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([(0, Encode_js_1.tryInclude)("@id", (value) => ({
-                Encode(helpers) {
-                    return helpers.encodeString(value);
-                },
-            }), ROCrate_genID(oa)), (0, Encode_js_1.tryInclude)("name", (value_2) => ({
-                Encode(helpers_1) {
-                    return helpers_1.encodeString(value_2);
-                },
-            }), oa.Name), (0, Encode_js_1.tryInclude)("type", MaterialType_js_1.ISAJson_encoder, oa.MaterialType), (0, Encode_js_1.tryIncludeListOpt)("characteristics", (oa_1) => (0, MaterialAttributeValue_js_1.ISAJson_encoder)(idMap, oa_1), oa.Characteristics), (0, Encode_js_1.tryIncludeListOpt)("derivesFrom", (c_1) => ISAJson_encoder(idMap, c_1), oa.DerivesFrom)]));
-        return {
-            Encode(helpers_2) {
-                const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_2)], values_1);
-                return helpers_2.encodeObject(arg);
-            },
-        };
-    };
-    if (idMap != null) {
-        return (0, IDTable_js_1.encode)(ROCrate_genID, f, c, (0, Option_js_1.value)(idMap));
-    }
-    else {
-        return f(c);
-    }
-}
-exports.ISAJson_allowedFields = (0, List_js_1.ofArray)(["@id", "@type", "name", "type", "characteristics", "derivesFrom", "@context"]);
-exports.ISAJson_decoder = (() => {
-    const decode = () => (0, Decode_js_1.Decode_objectNoAdditionalProperties)(exports.ISAJson_allowedFields, (get$) => {
-        let objectArg, objectArg_1, objectArg_2, arg_7, objectArg_3, arg_9, objectArg_4;
-        return new Material_js_1.Material((objectArg = get$.Optional, objectArg.Field("@id", Decode_js_1.Decode_uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("name", Decode_fs_js_1.string)), (objectArg_2 = get$.Optional, objectArg_2.Field("type", MaterialType_js_1.ISAJson_decoder)), (arg_7 = (0, Decode_fs_js_1.list)(MaterialAttributeValue_js_1.ISAJson_decoder), (objectArg_3 = get$.Optional, objectArg_3.Field("characteristics", arg_7))), (arg_9 = (0, Decode_fs_js_1.list)(decode()), (objectArg_4 = get$.Optional, objectArg_4.Field("derivesFrom", arg_9))));
-    });
-    return decode();
-})();

package/dist/ts/cjs/ts/Json/Process/MaterialAttribute.js

@@ -1,47 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.decoder = void 0;
-exports.genID = genID;
-exports.encoder = encoder;
-const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
-const OntologyAnnotation_js_1 = require("../OntologyAnnotation.js");
-const MaterialAttribute_js_1 = require("../../Core/Process/MaterialAttribute.js");
-const List_js_1 = require("@fable-org/fable-library-js/List.js");
-const Encode_js_1 = require("../Encode.js");
-const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
-const IDTable_js_1 = require("../IDTable.js");
-const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
-function genID(m) {
-    const matchValue = m.CharacteristicType;
-    if (matchValue == null) {
-        return "#EmptyFactor";
-    }
-    else {
-        return `#MaterialAttribute/${(0, OntologyAnnotation_js_1.OntologyAnnotation_ROCrate_genID)((0, Option_js_1.value)(matchValue))}`;
-    }
-}
-function encoder(idMap, value) {
-    const f = (value_1) => {
-        const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([(0, Encode_js_1.tryInclude)("@id", (value_2) => ({
-                Encode(helpers) {
-                    return helpers.encodeString(value_2);
-                },
-            }), genID(value_1)), (0, Encode_js_1.tryInclude)("characteristicType", (oa) => (0, OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_encoder)(idMap, oa), value_1.CharacteristicType)]));
-        return {
-            Encode(helpers_1) {
-                const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_1)], values_1);
-                return helpers_1.encodeObject(arg);
-            },
-        };
-    };
-    if (idMap != null) {
-        return (0, IDTable_js_1.encode)(genID, f, value, (0, Option_js_1.value)(idMap));
-    }
-    else {
-        return f(value);
-    }
-}
-exports.decoder = (0, Decode_fs_js_1.object)((get$) => {
-    let objectArg;
-    return new MaterialAttribute_js_1.MaterialAttribute(undefined, (objectArg = get$.Optional, objectArg.Field("characteristicType", OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_decoder)));
-});

package/dist/ts/cjs/ts/Json/Process/MaterialAttributeValue.js

@@ -1,47 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ISAJson_decoder = exports.ROCrate_decoder = exports.ROCrate_encoder = void 0;
-exports.ISAJson_genID = ISAJson_genID;
-exports.ISAJson_encoder = ISAJson_encoder;
-const PropertyValue_js_1 = require("../PropertyValue.js");
-const MaterialAttributeValue_js_1 = require("../../Core/Process/MaterialAttributeValue.js");
-const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
-const List_js_1 = require("@fable-org/fable-library-js/List.js");
-const Encode_js_1 = require("../Encode.js");
-const MaterialAttribute_js_1 = require("./MaterialAttribute.js");
-const Value_js_1 = require("./Value.js");
-const OntologyAnnotation_js_1 = require("../OntologyAnnotation.js");
-const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
-const IDTable_js_1 = require("../IDTable.js");
-const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
-const Decode_js_1 = require("../Decode.js");
-exports.ROCrate_encoder = PropertyValue_js_1.encoder;
-exports.ROCrate_decoder = (0, PropertyValue_js_1.decoder)(MaterialAttributeValue_js_1.MaterialAttributeValue_createAsPV);
-function ISAJson_genID(oa) {
-    return (0, PropertyValue_js_1.genID)(oa);
-}
-function ISAJson_encoder(idMap, oa) {
-    const f = (oa_1) => {
-        const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([(0, Encode_js_1.tryInclude)("@id", (value) => ({
-                Encode(helpers) {
-                    return helpers.encodeString(value);
-                },
-            }), ISAJson_genID(oa_1)), (0, Encode_js_1.tryInclude)("category", (value_2) => (0, MaterialAttribute_js_1.encoder)(idMap, value_2), oa_1.Category), (0, Encode_js_1.tryInclude)("value", (value_3) => (0, Value_js_1.encoder)(idMap, value_3), oa_1.Value), (0, Encode_js_1.tryInclude)("unit", (oa_3) => (0, OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_encoder)(idMap, oa_3), oa_1.Unit)]));
-        return {
-            Encode(helpers_1) {
-                const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_1)], values_1);
-                return helpers_1.encodeObject(arg);
-            },
-        };
-    };
-    if (idMap != null) {
-        return (0, IDTable_js_1.encode)(ISAJson_genID, f, oa, (0, Option_js_1.value)(idMap));
-    }
-    else {
-        return f(oa);
-    }
-}
-exports.ISAJson_decoder = (0, Decode_fs_js_1.object)((get$) => {
-    let objectArg, objectArg_1, objectArg_2, objectArg_3;
-    return new MaterialAttributeValue_js_1.MaterialAttributeValue((objectArg = get$.Optional, objectArg.Field("@id", Decode_js_1.Decode_uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("category", MaterialAttribute_js_1.decoder)), (objectArg_2 = get$.Optional, objectArg_2.Field("value", Value_js_1.decoder)), (objectArg_3 = get$.Optional, objectArg_3.Field("unit", OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_decoder)));
-});

package/dist/ts/cjs/ts/Json/Process/MaterialType.js

@@ -1,46 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ISAJson_decoder = exports.ISAJson_encoder = exports.ROCrate_decoder = void 0;
-exports.ROCrate_encoder = ROCrate_encoder;
-const Types_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Types.fs.js");
-const MaterialType_js_1 = require("../../Core/Process/MaterialType.js");
-const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
-const Result_js_1 = require("@fable-org/fable-library-js/Result.js");
-function ROCrate_encoder(value) {
-    if (value.tag === /* LabeledExtractName */ 1) {
-        return {
-            Encode(helpers_1) {
-                return helpers_1.encodeString("Labeled Extract Name");
-            },
-        };
-    }
-    else {
-        return {
-            Encode(helpers) {
-                return helpers.encodeString("Extract Name");
-            },
-        };
-    }
-}
-exports.ROCrate_decoder = {
-    Decode(s, json) {
-        const matchValue = Decode_fs_js_1.string.Decode(s, json);
-        if (matchValue.tag === /* Error */ 1) {
-            return (0, Result_js_1.FSharpResult$2_Error)(matchValue.fields[0]);
-        }
-        else {
-            switch (matchValue.fields[0]) {
-                case "Extract Name":
-                    return (0, Result_js_1.FSharpResult$2_Ok)((0, MaterialType_js_1.MaterialType_ExtractName)());
-                case "Labeled Extract Name":
-                    return (0, Result_js_1.FSharpResult$2_Ok)((0, MaterialType_js_1.MaterialType_LabeledExtractName)());
-                default: {
-                    const s_1 = matchValue.fields[0];
-                    return (0, Result_js_1.FSharpResult$2_Error)([`Could not parse ${s_1}No other value than "Extract Name" or "Labeled Extract Name" allowed for materialtype`, (0, Types_fs_js_1.ErrorReason$1_BadPrimitive)(s_1, json)]);
-                }
-            }
-        }
-    },
-};
-exports.ISAJson_encoder = ROCrate_encoder;
-exports.ISAJson_decoder = exports.ROCrate_decoder;

package/dist/ts/cjs/ts/Json/Process/Process.js

@@ -1,109 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ISAJson_decoder = exports.ROCrate_decoder = void 0;
-exports.ROCrate_genID = ROCrate_genID;
-exports.ROCrate_encoder = ROCrate_encoder;
-exports.ISAJson_encoder = ISAJson_encoder;
-const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
-const String_js_1 = require("@fable-org/fable-library-js/String.js");
-const URI_js_1 = require("../../Core/URI.js");
-const Process_js_1 = require("../../Core/Process/Process.js");
-const List_js_1 = require("@fable-org/fable-library-js/List.js");
-const Encode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.js");
-const Encode_js_1 = require("../Encode.js");
-const Protocol_js_1 = require("./Protocol.js");
-const ProcessParameterValue_js_1 = require("./ProcessParameterValue.js");
-const Person_js_1 = require("../Person.js");
-const ProcessInput_js_1 = require("./ProcessInput.js");
-const ProcessOutput_js_1 = require("./ProcessOutput.js");
-const Comment_js_1 = require("../Comment.js");
-const isa_process_context_js_1 = require("../context/rocrate/isa_process_context.js");
-const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
-const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
-const Decode_js_1 = require("../Decode.js");
-const IDTable_js_1 = require("../IDTable.js");
-function ROCrate_genID(p) {
-    const matchValue = p.ID;
-    if (matchValue == null) {
-        const matchValue_1 = p.Name;
-        if (matchValue_1 == null) {
-            return "#EmptyProcess";
-        }
-        else {
-            return "#Process_" + (0, String_js_1.replace)((0, Option_js_1.value)(matchValue_1), " ", "_");
-        }
-    }
-    else {
-        return (0, URI_js_1.URIModule_toString)((0, Option_js_1.value)(matchValue));
-    }
-}
-function ROCrate_encoder(studyName, assayName, oa) {
-    let value;
-    const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([["@id", (value = ROCrate_genID(oa), {
-                Encode(helpers) {
-                    return helpers.encodeString(value);
-                },
-            })], ["@type", (0, Encode_fs_js_1.list)((0, List_js_1.singleton)({
-                Encode(helpers_1) {
-                    return helpers_1.encodeString("Process");
-                },
-            }))], (0, Encode_js_1.tryInclude)("name", (value_2) => ({
-            Encode(helpers_2) {
-                return helpers_2.encodeString(value_2);
-            },
-        }), oa.Name), (0, Encode_js_1.tryInclude)("executesProtocol", (oa_1) => (0, Protocol_js_1.ROCrate_encoder)(studyName, assayName, oa.Name, oa_1), oa.ExecutesProtocol), (0, Encode_js_1.tryIncludeListOpt)("parameterValues", ProcessParameterValue_js_1.ROCrate_encoder, oa.ParameterValues), (0, Encode_js_1.tryInclude)("performer", Person_js_1.ROCrate_encodeAuthorListString, oa.Performer), (0, Encode_js_1.tryInclude)("date", (value_4) => ({
-            Encode(helpers_3) {
-                return helpers_3.encodeString(value_4);
-            },
-        }), oa.Date), (0, Encode_js_1.tryIncludeListOpt)("inputs", ProcessInput_js_1.ROCrate_encoder, oa.Inputs), (0, Encode_js_1.tryIncludeListOpt)("outputs", ProcessOutput_js_1.ROCrate_encoder, oa.Outputs), (0, Encode_js_1.tryIncludeListOpt)("comments", Comment_js_1.ROCrate_encoder, oa.Comments), ["@context", isa_process_context_js_1.context_jsonvalue]]));
-    return {
-        Encode(helpers_4) {
-            const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_4)], values_1);
-            return helpers_4.encodeObject(arg);
-        },
-    };
-}
-exports.ROCrate_decoder = (0, Decode_fs_js_1.object)((get$) => {
-    let objectArg, objectArg_1, objectArg_2, arg_7, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8;
-    return new Process_js_1.Process((objectArg = get$.Optional, objectArg.Field("@id", Decode_js_1.Decode_uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("name", Decode_fs_js_1.string)), (objectArg_2 = get$.Optional, objectArg_2.Field("executesProtocol", Protocol_js_1.ROCrate_decoder)), (arg_7 = (0, Decode_fs_js_1.list)(ProcessParameterValue_js_1.ROCrate_decoder), (objectArg_3 = get$.Optional, objectArg_3.Field("parameterValues", arg_7))), (objectArg_4 = get$.Optional, objectArg_4.Field("performer", Person_js_1.ROCrate_decodeAuthorListString)), (objectArg_5 = get$.Optional, objectArg_5.Field("date", Decode_fs_js_1.string)), undefined, undefined, (arg_13 = (0, Decode_fs_js_1.list)(ProcessInput_js_1.ROCrate_decoder), (objectArg_6 = get$.Optional, objectArg_6.Field("inputs", arg_13))), (arg_15 = (0, Decode_fs_js_1.list)(ProcessOutput_js_1.ROCrate_decoder), (objectArg_7 = get$.Optional, objectArg_7.Field("outputs", arg_15))), (arg_17 = (0, Decode_fs_js_1.list)(Comment_js_1.ROCrate_decoder), (objectArg_8 = get$.Optional, objectArg_8.Field("comments", arg_17))));
-});
-function ISAJson_encoder(studyName, assayName, idMap, oa) {
-    const f = (oa_1) => {
-        const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([(0, Encode_js_1.tryInclude)("@id", (value) => ({
-                Encode(helpers) {
-                    return helpers.encodeString(value);
-                },
-            }), ROCrate_genID(oa_1)), (0, Encode_js_1.tryInclude)("name", (value_2) => ({
-                Encode(helpers_1) {
-                    return helpers_1.encodeString(value_2);
-                },
-            }), oa_1.Name), (0, Encode_js_1.tryInclude)("executesProtocol", (oa_2) => (0, Protocol_js_1.ISAJson_encoder)(studyName, assayName, oa_1.Name, idMap, oa_2), oa_1.ExecutesProtocol), (0, Encode_js_1.tryIncludeListOpt)("parameterValues", (oa_3) => (0, ProcessParameterValue_js_1.ISAJson_encoder)(idMap, oa_3), oa_1.ParameterValues), (0, Encode_js_1.tryInclude)("performer", (value_4) => ({
-                Encode(helpers_2) {
-                    return helpers_2.encodeString(value_4);
-                },
-            }), oa_1.Performer), (0, Encode_js_1.tryInclude)("date", (value_6) => ({
-                Encode(helpers_3) {
-                    return helpers_3.encodeString(value_6);
-                },
-            }), oa_1.Date), (0, Encode_js_1.tryInclude)("previousProcess", (oa_4) => ISAJson_encoder(studyName, assayName, idMap, oa_4), oa_1.PreviousProcess), (0, Encode_js_1.tryInclude)("nextProcess", (oa_5) => ISAJson_encoder(studyName, assayName, idMap, oa_5), oa_1.NextProcess), (0, Encode_js_1.tryIncludeListOpt)("inputs", (value_8) => (0, ProcessInput_js_1.ISAJson_encoder)(idMap, value_8), oa_1.Inputs), (0, Encode_js_1.tryIncludeListOpt)("outputs", (value_9) => (0, ProcessOutput_js_1.ISAJson_encoder)(idMap, value_9), oa_1.Outputs), (0, Encode_js_1.tryIncludeListOpt)("comments", (comment) => (0, Comment_js_1.ISAJson_encoder)(idMap, comment), oa_1.Comments)]));
-        return {
-            Encode(helpers_4) {
-                const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers_4)], values_1);
-                return helpers_4.encodeObject(arg);
-            },
-        };
-    };
-    if (idMap != null) {
-        return (0, IDTable_js_1.encode)(ROCrate_genID, f, oa, (0, Option_js_1.value)(idMap));
-    }
-    else {
-        return f(oa);
-    }
-}
-exports.ISAJson_decoder = (() => {
-    const decode = () => (0, Decode_fs_js_1.object)((get$) => {
-        let objectArg, objectArg_1, objectArg_2, arg_7, objectArg_3, objectArg_4, objectArg_5, arg_13, objectArg_6, arg_15, objectArg_7, arg_17, objectArg_8, arg_19, objectArg_9, arg_21, objectArg_10;
-        return new Process_js_1.Process((objectArg = get$.Optional, objectArg.Field("@id", Decode_js_1.Decode_uri)), (objectArg_1 = get$.Optional, objectArg_1.Field("name", Decode_fs_js_1.string)), (objectArg_2 = get$.Optional, objectArg_2.Field("executesProtocol", Protocol_js_1.ISAJson_decoder)), (arg_7 = (0, Decode_fs_js_1.list)(ProcessParameterValue_js_1.ISAJson_decoder), (objectArg_3 = get$.Optional, objectArg_3.Field("parameterValues", arg_7))), (objectArg_4 = get$.Optional, objectArg_4.Field("performer", Decode_fs_js_1.string)), (objectArg_5 = get$.Optional, objectArg_5.Field("date", Decode_fs_js_1.string)), (arg_13 = decode(), (objectArg_6 = get$.Optional, objectArg_6.Field("previousProcess", arg_13))), (arg_15 = decode(), (objectArg_7 = get$.Optional, objectArg_7.Field("nextProcess", arg_15))), (arg_17 = (0, Decode_fs_js_1.list)(ProcessInput_js_1.ISAJson_decoder), (objectArg_8 = get$.Optional, objectArg_8.Field("inputs", arg_17))), (arg_19 = (0, Decode_fs_js_1.list)(ProcessOutput_js_1.ISAJson_decoder), (objectArg_9 = get$.Optional, objectArg_9.Field("outputs", arg_19))), (arg_21 = (0, Decode_fs_js_1.list)(Comment_js_1.ISAJson_decoder), (objectArg_10 = get$.Optional, objectArg_10.Field("comments", arg_21))));
-    });
-    return decode();
-})();

package/dist/ts/cjs/ts/Json/Process/ProcessInput.js

@@ -1,38 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ISAJson_decoder = exports.ROCrate_decoder = void 0;
-exports.ROCrate_encoder = ROCrate_encoder;
-exports.ISAJson_encoder = ISAJson_encoder;
-const Sample_js_1 = require("./Sample.js");
-const Data_js_1 = require("../Data.js");
-const Material_js_1 = require("./Material.js");
-const Source_js_1 = require("./Source.js");
-const ProcessInput_js_1 = require("../../Core/Process/ProcessInput.js");
-const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
-const List_js_1 = require("@fable-org/fable-library-js/List.js");
-function ROCrate_encoder(value) {
-    switch (value.tag) {
-        case /* Sample */ 1:
-            return (0, Sample_js_1.ROCrate_encoder)(value.fields[0]);
-        case /* Data */ 2:
-            return (0, Data_js_1.ROCrate_encoder)(value.fields[0]);
-        case /* Material */ 3:
-            return (0, Material_js_1.ROCrate_encoder)(value.fields[0]);
-        default:
-            return (0, Source_js_1.ROCrate_encoder)(value.fields[0]);
-    }
-}
-exports.ROCrate_decoder = (0, Decode_fs_js_1.oneOf)((0, List_js_1.ofArray)([(0, Decode_fs_js_1.map)(ProcessInput_js_1.ProcessInput_Sample, Sample_js_1.ROCrate_decoder), (0, Decode_fs_js_1.map)(ProcessInput_js_1.ProcessInput_Source, Source_js_1.ROCrate_decoder), (0, Decode_fs_js_1.map)(ProcessInput_js_1.ProcessInput_Data, Data_js_1.ROCrate_decoder), (0, Decode_fs_js_1.map)(ProcessInput_js_1.ProcessInput_Material, Material_js_1.ROCrate_decoder)]));
-function ISAJson_encoder(idMap, value) {
-    switch (value.tag) {
-        case /* Sample */ 1:
-            return (0, Sample_js_1.ISAJson_encoder)(idMap, value.fields[0]);
-        case /* Data */ 2:
-            return (0, Data_js_1.ISAJson_encoder)(idMap, value.fields[0]);
-        case /* Material */ 3:
-            return (0, Material_js_1.ISAJson_encoder)(idMap, value.fields[0]);
-        default:
-            return (0, Source_js_1.ISAJson_encoder)(idMap, value.fields[0]);
-    }
-}
-exports.ISAJson_decoder = (0, Decode_fs_js_1.oneOf)((0, List_js_1.ofArray)([(0, Decode_fs_js_1.map)(ProcessInput_js_1.ProcessInput_Source, Source_js_1.ISAJson_decoder), (0, Decode_fs_js_1.map)(ProcessInput_js_1.ProcessInput_Sample, Sample_js_1.ISAJson_decoder), (0, Decode_fs_js_1.map)(ProcessInput_js_1.ProcessInput_Data, Data_js_1.ISAJson_decoder), (0, Decode_fs_js_1.map)(ProcessInput_js_1.ProcessInput_Material, Material_js_1.ISAJson_decoder)]));

package/dist/ts/cjs/ts/Json/Process/ProcessOutput.js

@@ -1,33 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ISAJson_decoder = exports.ROCrate_decoder = void 0;
-exports.ROCrate_encoder = ROCrate_encoder;
-exports.ISAJson_encoder = ISAJson_encoder;
-const Data_js_1 = require("../Data.js");
-const Material_js_1 = require("./Material.js");
-const Sample_js_1 = require("./Sample.js");
-const ProcessOutput_js_1 = require("../../Core/Process/ProcessOutput.js");
-const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
-const List_js_1 = require("@fable-org/fable-library-js/List.js");
-function ROCrate_encoder(value) {
-    switch (value.tag) {
-        case /* Data */ 1:
-            return (0, Data_js_1.ROCrate_encoder)(value.fields[0]);
-        case /* Material */ 2:
-            return (0, Material_js_1.ROCrate_encoder)(value.fields[0]);
-        default:
-            return (0, Sample_js_1.ROCrate_encoder)(value.fields[0]);
-    }
-}
-exports.ROCrate_decoder = (0, Decode_fs_js_1.oneOf)((0, List_js_1.ofArray)([(0, Decode_fs_js_1.map)(ProcessOutput_js_1.ProcessOutput_Sample, Sample_js_1.ROCrate_decoder), (0, Decode_fs_js_1.map)(ProcessOutput_js_1.ProcessOutput_Data, Data_js_1.ROCrate_decoder), (0, Decode_fs_js_1.map)(ProcessOutput_js_1.ProcessOutput_Material, Material_js_1.ROCrate_decoder)]));
-function ISAJson_encoder(idMap, value) {
-    switch (value.tag) {
-        case /* Data */ 1:
-            return (0, Data_js_1.ISAJson_encoder)(idMap, value.fields[0]);
-        case /* Material */ 2:
-            return (0, Material_js_1.ISAJson_encoder)(idMap, value.fields[0]);
-        default:
-            return (0, Sample_js_1.ISAJson_encoder)(idMap, value.fields[0]);
-    }
-}
-exports.ISAJson_decoder = (0, Decode_fs_js_1.oneOf)((0, List_js_1.ofArray)([(0, Decode_fs_js_1.map)(ProcessOutput_js_1.ProcessOutput_Sample, Sample_js_1.ISAJson_decoder), (0, Decode_fs_js_1.map)(ProcessOutput_js_1.ProcessOutput_Data, Data_js_1.ISAJson_decoder), (0, Decode_fs_js_1.map)(ProcessOutput_js_1.ProcessOutput_Material, Material_js_1.ISAJson_decoder)]));

package/dist/ts/cjs/ts/Json/Process/ProcessParameterValue.js

@@ -1,33 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ISAJson_decoder = exports.ROCrate_decoder = exports.ROCrate_encoder = void 0;
-exports.ISAJson_genID = ISAJson_genID;
-exports.ISAJson_encoder = ISAJson_encoder;
-const PropertyValue_js_1 = require("../PropertyValue.js");
-const ProcessParameterValue_js_1 = require("../../Core/Process/ProcessParameterValue.js");
-const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
-const List_js_1 = require("@fable-org/fable-library-js/List.js");
-const Encode_js_1 = require("../Encode.js");
-const ProtocolParameter_js_1 = require("./ProtocolParameter.js");
-const Value_js_1 = require("./Value.js");
-const OntologyAnnotation_js_1 = require("../OntologyAnnotation.js");
-const Seq_js_1 = require("@fable-org/fable-library-js/Seq.js");
-const Decode_fs_js_1 = require("../../fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.js");
-exports.ROCrate_encoder = PropertyValue_js_1.encoder;
-exports.ROCrate_decoder = (0, PropertyValue_js_1.decoder)((alternateName, measurementMethod, description, category, value, unit) => ProcessParameterValue_js_1.ProcessParameterValue.createAsPV(alternateName, measurementMethod, description, category, value, unit));
-function ISAJson_genID(oa) {
-    throw new Error("Not implemented");
-}
-function ISAJson_encoder(idMap, oa) {
-    const values_1 = (0, List_js_1.choose)((tupledArg) => (0, Option_js_1.map)((v_1) => [tupledArg[0], v_1], tupledArg[1]), (0, List_js_1.ofArray)([(0, Encode_js_1.tryInclude)("category", (value) => (0, ProtocolParameter_js_1.encoder)(idMap, value), oa.Category), (0, Encode_js_1.tryInclude)("value", (value_1) => (0, Value_js_1.encoder)(idMap, value_1), oa.Value), (0, Encode_js_1.tryInclude)("unit", (oa_1) => (0, OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_encoder)(idMap, oa_1), oa.Unit)]));
-    return {
-        Encode(helpers) {
-            const arg = (0, Seq_js_1.map)((tupledArg_1) => [tupledArg_1[0], tupledArg_1[1].Encode(helpers)], values_1);
-            return helpers.encodeObject(arg);
-        },
-    };
-}
-exports.ISAJson_decoder = (0, Decode_fs_js_1.object)((get$) => {
-    let objectArg, objectArg_1, objectArg_2;
-    return new ProcessParameterValue_js_1.ProcessParameterValue((objectArg = get$.Optional, objectArg.Field("category", ProtocolParameter_js_1.decoder)), (objectArg_1 = get$.Optional, objectArg_1.Field("value", Value_js_1.decoder)), (objectArg_2 = get$.Optional, objectArg_2.Field("unit", OntologyAnnotation_js_1.OntologyAnnotation_ISAJson_decoder)));
-});