@nfdi4plants/arctrl 3.0.0-beta.2 → 3.0.0-beta.3

package/dist/ts/index.d.ts

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+import { LDNode, LDGraph, LDRef, LDValue } from './ts/ROCrate/LDObject.js';
+import { LDContext } from './ts/ROCrate/LDContext.js';
+import { initV1_1, initV1_2DRAFT, initBioschemasContext } from './ts/ROCrate/ROCrateContext.js';
+import { LDComment } from './ts/ROCrate/Generic/Comment.js';
+import { LDDefinedTerm } from './ts/ROCrate/Generic/DefinedTerm.js';
+import { LDFile } from './ts/ROCrate/Generic/File.js';
+import { LDLabProcess } from './ts/ROCrate/Generic/LabProcess.js';
+import { LDLabProtocol } from './ts/ROCrate/Generic/LabProtocol.js';
+import { LDOrganization } from './ts/ROCrate/Generic/Organization.js';
+import { LDPerson } from './ts/ROCrate/Generic/Person.js';
+import { LDPostalAddress } from './ts/ROCrate/Generic/PostalAddress.js';
+import { LDPropertyValue } from './ts/ROCrate/Generic/PropertyValue.js';
+import { LDSample } from './ts/ROCrate/Generic/Sample.js';
+import { LDScholarlyArticle } from './ts/ROCrate/Generic/ScholarlyArticle.js';
+import { LDDataset } from './ts/ROCrate/Generic/Dataset.js';
+import { LDGraphExtensions_PyJsInterop as LDGraphIO, LDNodeExtensions_PyJsInterop as LDNodeIO } from './ts/JsonIO/LDObject.js';
+import { TypeExtensions_Conversion as Conversion } from './ts/Conversion.js';
+export { ARC } from './ts/ARC.js';
+export { ArcAssay, ArcStudy, ArcRun, ArcWorkflow, ArcInvestigation } from './ts/Core/ArcTypes.js';
+export { CompositeCell } from './ts/Core/Table/CompositeCell.js';
+export { CompositeHeader, IOType } from './ts/Core/Table/CompositeHeader.js';
+export { CompositeColumn } from './ts/Core/Table/CompositeColumn.js';
+export { ArcTable } from './ts/Core/Table/ArcTable.js';
+export { Template, Organisation } from './ts/Core/Template.js';
+export { Templates } from './ts/Core/Templates.js';
+export { JsonController } from './ts/Json.js';
+export { XlsxController } from './ts/Xlsx.js';
+export { Person } from './ts/Core/Person.js';
+export { Publication } from './ts/Core/Publication.js';
+export { OntologyAnnotation } from './ts/Core/OntologyAnnotation.js';
+export { Comment$ as Comment } from './ts/Core/Comment.js';
+export { Contract } from './ts/Contract/Contract.js';
+export { WebController } from './ts/Template.Web.js';
+export { FileSystem } from './ts/FileSystem/FileSystem.js';
+export { FileSystemTree } from './ts/FileSystem/FileSystemTree.js';
+export declare const ROCrate: {
+    LDNode: typeof LDNode;
+    LDGraph: typeof LDGraph;
+    LDValue: typeof LDValue;
+    LDRef: typeof LDRef;
+    LDContext: typeof LDContext;
+    initV1_1: typeof initV1_1;
+    initV1_2DRAFT: typeof initV1_2DRAFT;
+    initBioschemasContext: typeof initBioschemasContext;
+    LDComment: typeof LDComment;
+    LDDefinedTerm: typeof LDDefinedTerm;
+    LDFile: typeof LDFile;
+    LDLabProcess: typeof LDLabProcess;
+    LDLabProtocol: typeof LDLabProtocol;
+    LDOrganization: typeof LDOrganization;
+    LDPerson: typeof LDPerson;
+    LDPostalAddress: typeof LDPostalAddress;
+    LDPropertyValue: typeof LDPropertyValue;
+    LDSample: typeof LDSample;
+    LDScholarlyArticle: typeof LDScholarlyArticle;
+    LDDataset: typeof LDDataset;
+    LDGraphIO: typeof LDGraphIO;
+    LDNodeIO: typeof LDNodeIO;
+    Conversion: typeof Conversion;
+};
+//# sourceMappingURL=index.d.ts.map

package/dist/ts/index.d.ts.map

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package/dist/ts/ts/ARC.d.ts

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+import { FileSystem } from './FileSystem/FileSystem.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { ArcRun, ArcWorkflow, ArcStudy, ArcAssay, ArcInvestigation } from './Core/ArcTypes.js';
+import { FSharpResult$2_$union } from '@fable-org/fable-library-js/Result.js';
+import { Contract } from './Contract/Contract.js';
+import { int32 } from '@fable-org/fable-library-js/Int32.js';
+import { DataMap } from './Core/DataMap.js';
+import { FileSystemTree_$union } from './FileSystem/FileSystemTree.js';
+import { FSharpList } from '@fable-org/fable-library-js/List.js';
+import { Remark, Comment$ } from './Core/Comment.js';
+import { Person } from './Core/Person.js';
+import { Publication } from './Core/Publication.js';
+import { OntologySourceReference } from './Core/OntologySourceReference.js';
+import { FSharpMap } from '@fable-org/fable-library-js/Map.js';
+import { ValidationPackagesConfig } from './ValidationPackages/ValidationPackagesConfig.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+export declare class ARC extends ArcInvestigation {
+    _cwl: Option<void>;
+    _fs: FileSystem;
+    "init@90": int32;
+    constructor(identifier: string, title?: string, description?: string, submissionDate?: string, publicReleaseDate?: string, ontologySourceReferences?: OntologySourceReference[], publications?: Publication[], contacts?: Person[], assays?: ArcAssay[], studies?: ArcStudy[], workflows?: ArcWorkflow[], runs?: ArcRun[], registeredStudyIdentifiers?: string[], comments?: Comment$[], remarks?: Remark[], cwl?: Option<void>, fs?: FileSystem);
+    get FileSystem(): FileSystem;
+    set FileSystem(fs: FileSystem);
+    static fromArcInvestigation(isa: ArcInvestigation, cwl?: Option<void>, fs?: FileSystem): ARC;
+    TryWriteAsync(arcPath: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+    TryUpdateAsync(arcPath: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+    static tryLoadAsync(arcPath: string): Promise<FSharpResult$2_$union<ARC, string[]>>;
+    GetAssayRemoveContracts(assayIdentifier: string): Contract[];
+    TryRemoveAssayAsync(arcPath: string, assayIdentifier: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+    GetAssayRenameContracts(oldAssayIdentifier: string, newAssayIdentifier: string): Contract[];
+    TryRenameAssayAsync(arcPath: string, oldAssayIdentifier: string, newAssayIdentifier: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+    GetStudyRemoveContracts(studyIdentifier: string): Contract[];
+    TryRemoveStudyAsync(arcPath: string, studyIdentifier: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+    GetStudyRenameContracts(oldStudyIdentifier: string, newStudyIdentifier: string): Contract[];
+    TryRenameStudyAsync(arcPath: string, oldStudyIdentifier: string, newStudyIdentifier: string): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+    WriteAsync(arcPath: string): Promise<void>;
+    UpdateAsync(arcPath: string): Promise<void>;
+    RemoveAssayAsync(arcPath: string, assayIdentifier: string): Promise<void>;
+    RenameAssayAsync(arcPath: string, oldAssayIdentifier: string, newAssayIdentifier: string): Promise<void>;
+    RemoveStudyAsync(arcPath: string, studyIdentifier: string): Promise<void>;
+    RenameStudyAsync(arcPath: string, oldStudyIdentifier: string, newStudyIdentifier: string): Promise<void>;
+    static loadAsync(arcPath: string): Promise<ARC>;
+    MakeDataFilesAbsolute(): void;
+    static fromFilePaths(filePaths: string[]): ARC;
+    SetFilePaths(filePaths: string[]): void;
+    GetReadContracts(): Contract[];
+    SetISAFromContracts(contracts: Contract[]): void;
+    UpdateFileSystem(): void;
+    GetWriteContracts(skipUpdateFS?: boolean): Contract[];
+    GetUpdateContracts(skipUpdateFS?: boolean): Contract[];
+    GetGitInitContracts(branch?: string, repositoryAddress?: string, defaultGitignore?: boolean, defaultGitattributes?: boolean): Contract[];
+    static getCloneContract(remoteUrl: string, merge?: boolean, branch?: string, token?: [string, string], nolfs?: boolean): Contract;
+    Copy(): ARC;
+    GetRegisteredPayload(IgnoreHidden?: boolean): FileSystemTree_$union;
+    GetAdditionalPayload(IgnoreHidden?: boolean): FileSystemTree_$union;
+    static get DefaultContracts(): FSharpMap<string, Contract>;
+    static fromDeprecatedROCrateJsonString(s: string): ARC;
+    static fromROCrateJsonString(s: string): ARC;
+    ToROCrateJsonString(spaces?: int32): string;
+    static toROCrateJsonString(spaces?: int32): ((arg0: ARC) => string);
+    GetValidationPackagesConfigWriteContract(vpc: ValidationPackagesConfig): Contract;
+    GetValidationPackagesConfigDeleteContract(vpc: ValidationPackagesConfig): Contract;
+    GetValidationPackagesConfigReadContract(): Contract;
+    GetValidationPackagesConfigFromReadContract(contract: Contract): Option<ValidationPackagesConfig>;
+    ToFilePaths(removeRoot?: boolean, skipUpdateFS?: boolean): string[];
+}
+export declare function ARC_$reflection(): TypeInfo;
+export declare function ARC_$ctor_5BB4A6F7(identifier: string, title?: string, description?: string, submissionDate?: string, publicReleaseDate?: string, ontologySourceReferences?: OntologySourceReference[], publications?: Publication[], contacts?: Person[], assays?: ArcAssay[], studies?: ArcStudy[], workflows?: ArcWorkflow[], runs?: ArcRun[], registeredStudyIdentifiers?: string[], comments?: Comment$[], remarks?: Remark[], cwl?: Option<void>, fs?: FileSystem): ARC;
+export declare function ARCAux_getArcAssaysFromContracts(contracts: Contract[]): ArcAssay[];
+export declare function ARCAux_getArcStudiesFromContracts(contracts: Contract[]): [ArcStudy, FSharpList<ArcAssay>][];
+export declare function ARCAux_getArcWorkflowsFromContracts(contracts: Contract[]): ArcWorkflow[];
+export declare function ARCAux_getArcRunsFromContracts(contracts: Contract[]): ArcRun[];
+export declare function ARCAux_getAssayDataMapFromContracts(assayIdentifier: string, contracts: Contract[]): Option<DataMap>;
+export declare function ARCAux_getStudyDataMapFromContracts(studyIdentifier: string, contracts: Contract[]): Option<DataMap>;
+export declare function ARCAux_getWorkflowDataMapFromContracts(workflowIdentifier: string, contracts: Contract[]): Option<DataMap>;
+export declare function ARCAux_getRunDataMapFromContracts(runIdentifier: string, contracts: Contract[]): Option<DataMap>;
+export declare function ARCAux_getArcInvestigationFromContracts(contracts: Contract[]): ArcInvestigation;
+export declare function ARCAux_updateFSByISA(isa: ArcInvestigation, fs: FileSystem): FileSystem;
+export declare function ARCAux_updateFSByCWL(cwl: Option<void>, fs: FileSystem): FileSystem;
+//# sourceMappingURL=ARC.d.ts.map

package/dist/ts/ts/ARC.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/ts/Contract/ARC.d.ts

@@ -0,0 +1,7 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Contract } from './Contract.js';
+/**
+ * Tries to create READ contract with DTOType = ISA_Assay, ISA_Study or ISA_Investigation from given path relative to ARC root.
+ */
+export declare function tryISAReadContractFromPath(path: string): Option<Contract>;
+//# sourceMappingURL=ARC.d.ts.map

package/dist/ts/ts/Contract/ARC.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ARC.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ARC.ts"],"names":[],"mappings":"AAEA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAOzC;;GAEG;AACH,wBAAgB,0BAA0B,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,QAAQ,CAAC,CA6CzE"}

package/dist/ts/ts/Contract/ArcAssay.d.ts

@@ -0,0 +1,12 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Contract } from './Contract.js';
+import { ArcAssay } from '../Core/ArcTypes.js';
+export declare function $007CAssayPath$007C_$007C(input: string[]): Option<string>;
+export declare function ARCtrl_ArcAssay__ArcAssay_ToCreateContract_6FCE9E49(this$: ArcAssay, WithFolder: Option<boolean>): Contract[];
+export declare function ARCtrl_ArcAssay__ArcAssay_ToUpdateContract(this$: ArcAssay): Contract;
+export declare function ARCtrl_ArcAssay__ArcAssay_ToDeleteContract(this$: ArcAssay): Contract;
+export declare function ARCtrl_ArcAssay__ArcAssay_toDeleteContract_Static_1501C0F8(assay: ArcAssay): Contract;
+export declare function ARCtrl_ArcAssay__ArcAssay_toCreateContract_Static_Z2508BE4F(assay: ArcAssay, WithFolder?: boolean): Contract[];
+export declare function ARCtrl_ArcAssay__ArcAssay_toUpdateContract_Static_1501C0F8(assay: ArcAssay): Contract;
+export declare function ARCtrl_ArcAssay__ArcAssay_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcAssay>;
+//# sourceMappingURL=ArcAssay.d.ts.map

package/dist/ts/ts/Contract/ArcAssay.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ArcAssay.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcAssay.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,QAAQ,EAAE,MAAM,qBAAqB,CAAC;AAG/C,wBAAgB,yBAAyB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BzE;AAED,wBAAgB,mDAAmD,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQ5H;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0CAA0C,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAGpF;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,2DAA2D,CAAC,KAAK,EAAE,QAAQ,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAE7H;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,QAAQ,GAAG,QAAQ,CAEpG;AAED,wBAAgB,6DAA6D,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,QAAQ,CAAC,CA8B3G"}

package/dist/ts/ts/Contract/ArcInvestigation.d.ts

@@ -0,0 +1,10 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Contract } from './Contract.js';
+import { ArcInvestigation } from '../Core/ArcTypes.js';
+export declare function $007CInvestigationPath$007C_$007C(input: string[]): Option<string>;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToCreateContract(this$: ArcInvestigation): Contract;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_ToUpdateContract(this$: ArcInvestigation): Contract;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_toCreateContract_Static_Z720BD3FF(inv: ArcInvestigation): Contract;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_toUpdateContract_Static_Z720BD3FF(inv: ArcInvestigation): Contract;
+export declare function ARCtrl_ArcInvestigation__ArcInvestigation_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcInvestigation>;
+//# sourceMappingURL=ArcInvestigation.d.ts.map

package/dist/ts/ts/Contract/ArcInvestigation.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ArcInvestigation.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcInvestigation.ts"],"names":[],"mappings":"AAIA,OAAO,EAAS,MAAM,EAAE,MAAM,uCAAuC,CAAC;AACtE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAEzC,OAAO,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAGvD,wBAAgB,iCAAiC,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CAmBjF;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,gBAAgB,GAAG,QAAQ,CAE5G;AAED,wBAAgB,0DAA0D,CAAC,KAAK,EAAE,gBAAgB,GAAG,QAAQ,CAE5G;AAED,wBAAgB,2EAA2E,CAAC,GAAG,EAAE,gBAAgB,GAAG,QAAQ,CAE3H;AAED,wBAAgB,2EAA2E,CAAC,GAAG,EAAE,gBAAgB,GAAG,QAAQ,CAE3H;AAED,wBAAgB,6EAA6E,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,gBAAgB,CAAC,CA8BnI"}

package/dist/ts/ts/Contract/ArcRun.d.ts

@@ -0,0 +1,12 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Contract } from './Contract.js';
+import { ArcRun } from '../Core/ArcTypes.js';
+export declare function $007CRunPath$007C_$007C(input: string[]): Option<string>;
+export declare function ARCtrl_ArcRun__ArcRun_ToCreateContract_6FCE9E49(this$: ArcRun, WithFolder: Option<boolean>): Contract[];
+export declare function ARCtrl_ArcRun__ArcRun_ToUpdateContract(this$: ArcRun): Contract;
+export declare function ARCtrl_ArcRun__ArcRun_ToDeleteContract(this$: ArcRun): Contract;
+export declare function ARCtrl_ArcRun__ArcRun_toDeleteContract_Static_Z3EFAF6F8(run: ArcRun): Contract;
+export declare function ARCtrl_ArcRun__ArcRun_toCreateContract_Static_Z71974BBF(run: ArcRun, WithFolder?: boolean): Contract[];
+export declare function ARCtrl_ArcRun__ArcRun_toUpdateContract_Static_Z3EFAF6F8(run: ArcRun): Contract;
+export declare function ARCtrl_ArcRun__ArcRun_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcRun>;
+//# sourceMappingURL=ArcRun.d.ts.map

package/dist/ts/ts/Contract/ArcRun.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ArcRun.d.ts","sourceRoot":"","sources":["../../../../src/ARCtrl/ts/Contract/ArcRun.ts"],"names":[],"mappings":"AAIA,OAAO,EAA6B,MAAM,EAAE,MAAM,uCAAuC,CAAC;AAE1F,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAIzC,OAAO,EAAE,MAAM,EAAE,MAAM,qBAAqB,CAAC;AAG7C,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC,MAAM,CAAC,CA0BvE;AAED,wBAAgB,+CAA+C,CAAC,KAAK,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,GAAG,QAAQ,EAAE,CAQtH;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,sCAAsC,CAAC,KAAK,EAAE,MAAM,GAAG,QAAQ,CAG9E;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,GAAG,QAAQ,EAAE,CAErH;AAED,wBAAgB,uDAAuD,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,CAE7F;AAED,wBAAgB,yDAAyD,CAAC,CAAC,EAAE,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,CA8BrG"}

package/dist/ts/ts/Contract/ArcStudy.d.ts

@@ -0,0 +1,13 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Contract } from './Contract.js';
+import { ArcAssay, ArcStudy } from '../Core/ArcTypes.js';
+import { FSharpList } from '@fable-org/fable-library-js/List.js';
+export declare function $007CStudyPath$007C_$007C(input: string[]): Option<string>;
+export declare function ARCtrl_ArcStudy__ArcStudy_ToCreateContract_6FCE9E49(this$: ArcStudy, WithFolder: Option<boolean>): Contract[];
+export declare function ARCtrl_ArcStudy__ArcStudy_ToUpdateContract(this$: ArcStudy): Contract;
+export declare function ARCtrl_ArcStudy__ArcStudy_ToDeleteContract(this$: ArcStudy): Contract;
+export declare function ARCtrl_ArcStudy__ArcStudy_toDeleteContract_Static_1680536E(study: ArcStudy): Contract;
+export declare function ARCtrl_ArcStudy__ArcStudy_toCreateContract_Static_Z76BBA099(study: ArcStudy, WithFolder?: boolean): Contract[];
+export declare function ARCtrl_ArcStudy__ArcStudy_toUpdateContract_Static_1680536E(study: ArcStudy): Contract;
+export declare function ARCtrl_ArcStudy__ArcStudy_tryFromReadContract_Static_7570923F(c: Contract): Option<[ArcStudy, FSharpList<ArcAssay>]>;
+//# sourceMappingURL=ArcStudy.d.ts.map

package/dist/ts/ts/Contract/ArcStudy.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/ts/Contract/ArcWorkflow.d.ts

@@ -0,0 +1,12 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { ArcWorkflow } from '../Core/ArcTypes.js';
+import { Contract } from './Contract.js';
+export declare function $007CWorkflowPath$007C_$007C(input: string[]): Option<string>;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToCreateContract_6FCE9E49(this$: ArcWorkflow, WithFolder: Option<boolean>): Contract[];
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToUpdateContract(this$: ArcWorkflow): Contract;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_ToDeleteContract(this$: ArcWorkflow): Contract;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toDeleteContract_Static_Z1C75CB0E(workflow: ArcWorkflow): Contract;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toCreateContract_Static_3B1E4D7B(workflow: ArcWorkflow, WithFolder?: boolean): Contract[];
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_toUpdateContract_Static_Z1C75CB0E(workflow: ArcWorkflow): Contract;
+export declare function ARCtrl_ArcWorkflow__ArcWorkflow_tryFromReadContract_Static_7570923F(c: Contract): Option<ArcWorkflow>;
+//# sourceMappingURL=ArcWorkflow.d.ts.map

package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/ts/Contract/Contract.d.ts

@@ -0,0 +1,39 @@
+import { Record } from '@fable-org/fable-library-js/Types.js';
+import { IComparable, IEquatable } from '@fable-org/fable-library-js/Util.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+export type DTOType = "ISA_Assay" | "ISA_Study" | "ISA_Workflow" | "ISA_Run" | "ISA_Investigation" | "ISA_Datamap" | "JSON" | "Markdown" | "CWL" | "YAML" | "PlainText" | "Cli";
+export declare class CLITool extends Record implements IEquatable<CLITool>, IComparable<CLITool> {
+    readonly Name: string;
+    readonly Arguments: string[];
+    constructor(Name: string, Arguments: string[]);
+    static create(name: string, arguments$: string[]): CLITool;
+}
+export declare function CLITool_$reflection(): TypeInfo;
+export type DTO = any | string | CLITool;
+export declare function DTO__get_isSpreadsheet(this$: DTO): boolean;
+export declare function DTO__get_isText(this$: DTO): boolean;
+export declare function DTO__get_isCLITool(this$: DTO): boolean;
+export declare function DTO__AsSpreadsheet(this$: DTO): DTO;
+export declare function DTO__AsText(this$: DTO): DTO;
+export declare function DTO__AsCLITool(this$: DTO): DTO;
+export type Operation = "CREATE" | "UPDATE" | "DELETE" | "READ" | "EXECUTE" | "RENAME";
+export declare class Contract extends Record implements IEquatable<Contract> {
+    readonly Operation: Operation;
+    readonly Path: string;
+    readonly DTOType: Option<DTOType>;
+    readonly DTO: Option<DTO>;
+    constructor(Operation: Operation, Path: string, DTOType: Option<DTOType>, DTO: Option<DTO>);
+    static create(op: Operation, path: string, { dtoType, dto }: {
+        dtoType?: DTOType;
+        dto?: DTO;
+    }): Contract;
+    static createCreate(path: string, dtoType: DTOType, dto?: DTO): Contract;
+    static createUpdate(path: string, dtoType: DTOType, dto: DTO): Contract;
+    static createDelete(path: string): Contract;
+    static createRead(path: string, dtoType: DTOType): Contract;
+    static createExecute(dto: CLITool, path?: string): Contract;
+    static createRename(oldPath: string, newPath: string): Contract;
+}
+export declare function Contract_$reflection(): TypeInfo;
+//# sourceMappingURL=Contract.d.ts.map

package/dist/ts/ts/Contract/Contract.d.ts.map

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package/dist/ts/ts/Contract/Datamap.d.ts

@@ -0,0 +1,29 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { Contract } from './Contract.js';
+import { DataMap } from '../Core/DataMap.js';
+export declare function $007CDatamapPath$007C_$007C(input: string[]): Option<string>;
+export declare function ARCtrl_DataMap__DataMap_ToCreateContractForAssay_Z721C83C5(this$: DataMap, assayIdentifier: string): Contract;
+export declare function ARCtrl_DataMap__DataMap_ToUpdateContractForAssay_Z721C83C5(this$: DataMap, assayIdentifier: string): Contract;
+export declare function ARCtrl_DataMap__DataMap_ToDeleteContractForAssay_Z721C83C5(this$: DataMap, assayIdentifier: string): Contract;
+export declare function ARCtrl_DataMap__DataMap_toDeleteContractForAssay_Static_Z721C83C5(assayIdentifier: string): ((arg0: DataMap) => Contract);
+export declare function ARCtrl_DataMap__DataMap_toUpdateContractForAssay_Static_Z721C83C5(assayIdentifier: string): ((arg0: DataMap) => Contract);
+export declare function ARCtrl_DataMap__DataMap_tryFromReadContractForAssay_Static(assayIdentifier: string, c: Contract): Option<DataMap>;
+export declare function ARCtrl_DataMap__DataMap_ToCreateContractForStudy_Z721C83C5(this$: DataMap, studyIdentifier: string): Contract;
+export declare function ARCtrl_DataMap__DataMap_ToUpdateContractForStudy_Z721C83C5(this$: DataMap, studyIdentifier: string): Contract;
+export declare function ARCtrl_DataMap__DataMap_ToDeleteContractForStudy_Z721C83C5(this$: DataMap, studyIdentifier: string): Contract;
+export declare function ARCtrl_DataMap__DataMap_toDeleteContractForStudy_Static_Z721C83C5(studyIdentifier: string): ((arg0: DataMap) => Contract);
+export declare function ARCtrl_DataMap__DataMap_toUpdateContractForStudy_Static_Z721C83C5(studyIdentifier: string): ((arg0: DataMap) => Contract);
+export declare function ARCtrl_DataMap__DataMap_tryFromReadContractForStudy_Static(studyIdentifier: string, c: Contract): Option<DataMap>;
+export declare function ARCtrl_DataMap__DataMap_ToCreateContractForWorkflow_Z721C83C5(this$: DataMap, workflowIdentifier: string): Contract;
+export declare function ARCtrl_DataMap__DataMap_ToUpdateContractForWorkflow_Z721C83C5(this$: DataMap, workflowIdentifier: string): Contract;
+export declare function ARCtrl_DataMap__DataMap_ToDeleteContractForWorkflow_Z721C83C5(this$: DataMap, workflowIdentifier: string): Contract;
+export declare function ARCtrl_DataMap__DataMap_toDeleteContractForWorkflow_Static_Z721C83C5(workflowIdentifier: string): ((arg0: DataMap) => Contract);
+export declare function ARCtrl_DataMap__DataMap_toUpdateContractForWorkflow_Static_Z721C83C5(workflowIdentifier: string): ((arg0: DataMap) => Contract);
+export declare function ARCtrl_DataMap__DataMap_tryFromReadContractForWorkflow_Static(workflowIdentifier: string, c: Contract): Option<DataMap>;
+export declare function ARCtrl_DataMap__DataMap_ToCreateContractForRun_Z721C83C5(this$: DataMap, runIdentifier: string): Contract;
+export declare function ARCtrl_DataMap__DataMap_ToUpdateContractForRun_Z721C83C5(this$: DataMap, runIdentifier: string): Contract;
+export declare function ARCtrl_DataMap__DataMap_ToDeleteContractForRun_Z721C83C5(this$: DataMap, runIdentifier: string): Contract;
+export declare function ARCtrl_DataMap__DataMap_toDeleteContractForRun_Static_Z721C83C5(runIdentifier: string): ((arg0: DataMap) => Contract);
+export declare function ARCtrl_DataMap__DataMap_toUpdateContractForRun_Static_Z721C83C5(runIdentifier: string): ((arg0: DataMap) => Contract);
+export declare function ARCtrl_DataMap__DataMap_tryFromReadContractForRun_Static(runIdentifier: string, c: Contract): Option<DataMap>;
+//# sourceMappingURL=Datamap.d.ts.map

package/dist/ts/ts/Contract/Datamap.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/ts/Contract/Git.d.ts

@@ -0,0 +1,28 @@
+import { Contract, CLITool } from './Contract.js';
+import { TypeInfo } from '@fable-org/fable-library-js/Reflection.js';
+export declare function gitWithArgs(arguments$: string[]): CLITool;
+export declare function createGitContractAt(path: string, arguments$: string[]): Contract;
+export declare function createGitContract(arguments$: string[]): Contract;
+export declare const gitignoreContract: Contract;
+export declare const gitattributesContract: Contract;
+export declare class Init {
+    constructor();
+}
+export declare function Init_$reflection(): TypeInfo;
+export declare class Clone {
+    constructor();
+}
+export declare function Clone_$reflection(): TypeInfo;
+export declare function Init_get_init(): string;
+export declare function Init_get_branchFlag(): string;
+export declare function Init_get_remote(): string;
+export declare function Init_get_add(): string;
+export declare function Init_get_origin(): string;
+export declare function Init_createInitContract_6DFDD678(branch?: string): Contract;
+export declare function Init_createAddRemoteContract_Z721C83C5(remoteUrl: string): Contract;
+export declare function Clone_get_clone(): string;
+export declare function Clone_get_branchFlag(): string;
+export declare function Clone_get_noLFSConfig(): string;
+export declare function Clone_formatRepoString(username: string, pass: string, url: string): string;
+export declare function Clone_createCloneContract_5000466F(remoteUrl: string, merge?: boolean, branch?: string, token?: [string, string], nolfs?: boolean): Contract;
+//# sourceMappingURL=Git.d.ts.map

package/dist/ts/ts/Contract/Git.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts

@@ -0,0 +1,12 @@
+import { Contract } from './Contract.js';
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { ValidationPackagesConfig } from '../ValidationPackages/ValidationPackagesConfig.js';
+export declare const ValidationPackagesConfigHelper_ConfigFilePath: string;
+export declare const ValidationPackagesConfigHelper_ReadContract: Contract;
+export declare function ValidationPackagesConfigExtensions_$007CValidationPackagesYamlPath$007C_$007C(input: string[]): Option<string>;
+export declare function ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_ToCreateContract(this$: ValidationPackagesConfig): Contract;
+export declare function ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_ToDeleteContract(this$: ValidationPackagesConfig): Contract;
+export declare function ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_toDeleteContract_Static_724DAE55(config: ValidationPackagesConfig): Contract;
+export declare function ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_toCreateContract_Static_724DAE55(config: ValidationPackagesConfig): Contract;
+export declare function ARCtrl_ValidationPackages_ValidationPackagesConfig__ValidationPackagesConfig_tryFromReadContract_Static_7570923F(c: Contract): Option<ValidationPackagesConfig>;
+//# sourceMappingURL=ValidationPackagesConfig.d.ts.map

package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/ts/ContractIO/ContractIO.d.ts

@@ -0,0 +1,11 @@
+import { FSharpResult$2_$union } from '@fable-org/fable-library-js/Result.js';
+import { Contract } from '../Contract/Contract.js';
+export declare function fulfillReadContractAsync(basePath: string, c: Contract): Promise<FSharpResult$2_$union<Contract, string>>;
+export declare function fullfillContractBatchAsyncBy(contractF: ((arg0: string, arg1: Contract) => Promise<FSharpResult$2_$union<Contract, string>>), basePath: string, cs: Contract[]): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+export declare function fulfillWriteContractAsync(basePath: string, c: Contract): Promise<FSharpResult$2_$union<Contract, string>>;
+export declare function fulfillUpdateContractAsync(basePath: string, c: Contract): Promise<FSharpResult$2_$union<Contract, string>>;
+export declare function fullfillRenameContractAsync(basePath: string, c: Contract): Promise<FSharpResult$2_$union<Contract, string>>;
+export declare function fullfillDeleteContractAsync(basePath: string, c: Contract): Promise<FSharpResult$2_$union<Contract, string>>;
+export declare function fullFillContract(basePath: string, c: Contract): Promise<FSharpResult$2_$union<Contract, string>>;
+export declare function fullFillContractBatchAsync(basePath: string, cs: Contract[]): Promise<FSharpResult$2_$union<Contract[], string[]>>;
+//# sourceMappingURL=ContractIO.d.ts.map

package/dist/ts/ts/ContractIO/ContractIO.d.ts.map

@@ -0,0 +1 @@
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package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts

@@ -0,0 +1,44 @@
+import { Option } from '@fable-org/fable-library-js/Option.js';
+import { uint8 } from '@fable-org/fable-library-js/Int32.js';
+import { FsWorkbook } from '../fable_modules/FsSpreadsheet.6.3.1/FsWorkbook.fs.js';
+export declare function FS_stat_Z721C83C5(path: string): Promise<any>;
+export declare function FS_mkdir(path: string, options: any): Promise<Option<string>>;
+export declare function FS_readdir(path: string, options: any): Promise<any[]>;
+export declare function FS_rename(oldName: string, newName: string): Promise<void>;
+export declare function FS_unlink_Z721C83C5(path: string): Promise<void>;
+export declare function FS_rm(path: string, options: any): Promise<void>;
+export declare function FS_readFile(path: string, encoding: Option<string>): Promise<any>;
+export declare function FS_writeFile(path: string, fileContent: any, encoding: Option<string>): Promise<void>;
+export declare function FS_readFileText_Z721C83C5(path: string): Promise<string>;
+export declare function FS_readFileBinary_Z721C83C5(path: string): Promise<uint8[]>;
+export declare function FS_writeFileText(path: string, text: string): Promise<void>;
+export declare function FS_writeFileBinary(path: string, bytes: uint8[]): Promise<void>;
+export declare function PathModule_dirname_Z721C83C5(path: string): Promise<string>;
+export declare function PathModule_join_Z35CD86D0(paths: string[]): Promise<string>;
+export declare function directoryExistsAsync(path: string): Promise<boolean>;
+export declare function createDirectoryAsync(path: string): Promise<void>;
+export declare function ensureDirectoryAsync(path: string): Promise<void>;
+export declare function ensureDirectoryOfFileAsync(filePath: string): Promise<void>;
+export declare function fileExistsAsync(path: string): Promise<boolean>;
+export declare function readFileTextAsync(path: string): Promise<string>;
+export declare function readFileBinaryAsync(path: string): Promise<uint8[]>;
+export declare function readFileXlsxAsync(path: string): Promise<FsWorkbook>;
+export declare function moveFileAsync(oldPath: string, newPath: string): Promise<void>;
+export declare function moveDirectoryAsync(oldPath: string, newPath: string): Promise<void>;
+export declare function deleteFileAsync(path: string): Promise<void>;
+export declare function deleteDirectoryAsync(path: string): Promise<void>;
+export declare function writeFileTextAsync(path: string, text: string): Promise<void>;
+export declare function writeFileBinaryAsync(path: string, bytes: uint8[]): Promise<void>;
+export declare function writeFileXlsxAsync(path: string, wb: FsWorkbook): Promise<void>;
+export declare function trim(path: string): string;
+/**
+ * Return the absolute path relative to the directoryPath
+ */
+export declare function makeRelative(directoryPath: string, path: string): string;
+export declare function standardizeSlashes(path: string): string;
+export declare function getSubDirectoriesAsync(path: string): Promise<string[]>;
+export declare function getSubFilesAsync(path: string): Promise<string[]>;
+export declare function getAllFilePathsAsync(directoryPath: string): Promise<string[]>;
+export declare function renameFileOrDirectoryAsync(oldPath: string, newPath: string): Promise<void>;
+export declare function deleteFileOrDirectoryAsync(path: string): Promise<void>;
+//# sourceMappingURL=FileSystemHelper.d.ts.map

package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts.map

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