@nfdi4plants/arctrl 3.0.0-beta.2 → 3.0.0-beta.3

package/dist/ts/cjs/ts/Core/Helper/Identifier.js

@@ -1,329 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.tryCheckValidCharacters = tryCheckValidCharacters;
-exports.checkValidCharacters = checkValidCharacters;
-exports.createMissingIdentifier = createMissingIdentifier;
-exports.isMissingIdentifier = isMissingIdentifier;
-exports.removeMissingIdentifier = removeMissingIdentifier;
-exports.Assay_identifierFromFileName = Assay_identifierFromFileName;
-exports.Assay_tryIdentifierFromFileName = Assay_tryIdentifierFromFileName;
-exports.Assay_fileNameFromIdentifier = Assay_fileNameFromIdentifier;
-exports.Assay_tryFileNameFromIdentifier = Assay_tryFileNameFromIdentifier;
-exports.Assay_datamapFileNameFromIdentifier = Assay_datamapFileNameFromIdentifier;
-exports.Assay_tryDatamapFileNameFromIdentifier = Assay_tryDatamapFileNameFromIdentifier;
-exports.Study_identifierFromFileName = Study_identifierFromFileName;
-exports.Study_tryIdentifierFromFileName = Study_tryIdentifierFromFileName;
-exports.Study_fileNameFromIdentifier = Study_fileNameFromIdentifier;
-exports.Study_tryFileNameFromIdentifier = Study_tryFileNameFromIdentifier;
-exports.Study_datamapFileNameFromIdentifier = Study_datamapFileNameFromIdentifier;
-exports.Study_tryDatamapFileNameFromIdentifier = Study_tryDatamapFileNameFromIdentifier;
-exports.Workflow_identifierFromFileName = Workflow_identifierFromFileName;
-exports.Workflow_tryIdentifierFromFileName = Workflow_tryIdentifierFromFileName;
-exports.Workflow_fileNameFromIdentifier = Workflow_fileNameFromIdentifier;
-exports.Workflow_tryFileNameFromIdentifier = Workflow_tryFileNameFromIdentifier;
-exports.Workflow_datamapFileNameFromIdentifier = Workflow_datamapFileNameFromIdentifier;
-exports.Workflow_tryDatamapFileNameFromIdentifier = Workflow_tryDatamapFileNameFromIdentifier;
-exports.Run_identifierFromFileName = Run_identifierFromFileName;
-exports.Run_tryIdentifierFromFileName = Run_tryIdentifierFromFileName;
-exports.Run_fileNameFromIdentifier = Run_fileNameFromIdentifier;
-exports.Run_tryFileNameFromIdentifier = Run_tryFileNameFromIdentifier;
-exports.Run_datamapFileNameFromIdentifier = Run_datamapFileNameFromIdentifier;
-exports.Run_tryDatamapFileNameFromIdentifier = Run_tryDatamapFileNameFromIdentifier;
-const Regex_js_1 = require("./Regex.js");
-const Guid_js_1 = require("@fable-org/fable-library-js/Guid.js");
-const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
-const Path_js_1 = require("../../FileSystem/Path.js");
-function tryCheckValidCharacters(identifier) {
-    if ((0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)("^[a-zA-Z0-9_\\- ]+$", identifier) != null) {
-        return true;
-    }
-    else {
-        return false;
-    }
-}
-function checkValidCharacters(identifier) {
-    if (tryCheckValidCharacters(identifier)) {
-    }
-    else {
-        throw new Error(`New identifier "${identifier}"contains forbidden characters! Allowed characters are: letters, digits, underscore (_), dash (-) and whitespace ( ).`);
-    }
-}
-function createMissingIdentifier() {
-    let copyOfStruct;
-    return "MISSING_IDENTIFIER_" + ((copyOfStruct = (0, Guid_js_1.newGuid)(), copyOfStruct));
-}
-function isMissingIdentifier(str) {
-    return str.startsWith("MISSING_IDENTIFIER_");
-}
-function removeMissingIdentifier(str) {
-    if (str.startsWith("MISSING_IDENTIFIER_")) {
-        return "";
-    }
-    else {
-        return str;
-    }
-}
-/**
- * On read-in the FileName can be any combination of "assays" (assay folder name), assayIdentifier and "isa.assay.xlsx" (the actual file name).
- *
- * This functions extracts assayIdentifier from any of these combinations and returns it.
- */
-function Assay_identifierFromFileName(fileName) {
-    const activePatternResult = (0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)("^(assays(\\/|\\\\))?(?<identifier>[a-zA-Z0-9_\\- ]+)((\\/|\\\\)isa.assay.xlsx)?$", fileName);
-    if (activePatternResult != null) {
-        const m = (0, Option_js_1.value)(activePatternResult);
-        return (m.groups && m.groups.identifier) || "";
-    }
-    else {
-        throw new Error(`Cannot parse assay identifier from FileName \`${fileName}\``);
-    }
-}
-/**
- * On read-in the FileName can be any combination of "assays" (assay folder name), assayIdentifier and "isa.assay.xlsx" (the actual file name).
- *
- * This functions extracts assayIdentifier from any of these combinations and returns it.
- */
-function Assay_tryIdentifierFromFileName(fileName) {
-    const activePatternResult = (0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)("^(assays(\\/|\\\\))?(?<identifier>[a-zA-Z0-9_\\- ]+)((\\/|\\\\)isa.assay.xlsx)?$", fileName);
-    if (activePatternResult != null) {
-        const m = (0, Option_js_1.value)(activePatternResult);
-        return (m.groups && m.groups.identifier) || "";
-    }
-    else {
-        return undefined;
-    }
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `assays/assayIdentifier/isa.assay.xlsx`.
- */
-function Assay_fileNameFromIdentifier(identifier) {
-    checkValidCharacters(identifier);
-    return (0, Path_js_1.combineMany)(["assays", identifier, "isa.assay.xlsx"]);
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `assays/assayIdentifier/isa.assay.xlsx`.
- */
-function Assay_tryFileNameFromIdentifier(identifier) {
-    if (tryCheckValidCharacters(identifier)) {
-        return (0, Path_js_1.combineMany)(["assays", identifier, "isa.assay.xlsx"]);
-    }
-    else {
-        return undefined;
-    }
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `assays/assayIdentifier/isa.datamap.xlsx`.
- */
-function Assay_datamapFileNameFromIdentifier(identifier) {
-    checkValidCharacters(identifier);
-    return (0, Path_js_1.combineMany)(["assays", identifier, "isa.datamap.xlsx"]);
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `assays/assayIdentifier/isa.datamap.xlsx`.
- */
-function Assay_tryDatamapFileNameFromIdentifier(identifier) {
-    if (tryCheckValidCharacters(identifier)) {
-        return (0, Path_js_1.combineMany)(["assays", identifier, "isa.datamap.xlsx"]);
-    }
-    else {
-        return undefined;
-    }
-}
-/**
- * On read-in the FileName can be any combination of "studies" (study folder name), studyIdentifier and "isa.study.xlsx" (the actual file name).
- *
- * This functions extracts studyIdentifier from any of these combinations and returns it.
- */
-function Study_identifierFromFileName(fileName) {
-    const activePatternResult = (0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)("^(studies(\\/|\\\\))?(?<identifier>[a-zA-Z0-9_\\- ]+)((\\/|\\\\)isa.study.xlsx)?$", fileName);
-    if (activePatternResult != null) {
-        const m = (0, Option_js_1.value)(activePatternResult);
-        return (m.groups && m.groups.identifier) || "";
-    }
-    else {
-        throw new Error(`Cannot parse study identifier from FileName \`${fileName}\``);
-    }
-}
-/**
- * On read-in the FileName can be any combination of "studies" (study folder name), studyIdentifier and "isa.study.xlsx" (the actual file name).
- *
- * This functions extracts studyIdentifier from any of these combinations and returns it.
- */
-function Study_tryIdentifierFromFileName(fileName) {
-    const activePatternResult = (0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)("^(studies(\\/|\\\\))?(?<identifier>[a-zA-Z0-9_\\- ]+)((\\/|\\\\)isa.study.xlsx)?$", fileName);
-    if (activePatternResult != null) {
-        const m = (0, Option_js_1.value)(activePatternResult);
-        return (m.groups && m.groups.identifier) || "";
-    }
-    else {
-        return undefined;
-    }
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `studies/studyIdentifier/isa.study.xlsx`.
- */
-function Study_fileNameFromIdentifier(identifier) {
-    checkValidCharacters(identifier);
-    return (0, Path_js_1.combineMany)(["studies", identifier, "isa.study.xlsx"]);
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `studies/studyIdentifier/isa.study.xlsx`.
- */
-function Study_tryFileNameFromIdentifier(identifier) {
-    if (tryCheckValidCharacters(identifier)) {
-        return (0, Path_js_1.combineMany)(["studies", identifier, "isa.study.xlsx"]);
-    }
-    else {
-        return undefined;
-    }
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `studies/studyIdentifier/isa.investigation.xlsx`.
- */
-function Study_datamapFileNameFromIdentifier(identifier) {
-    checkValidCharacters(identifier);
-    return (0, Path_js_1.combineMany)(["studies", identifier, "isa.datamap.xlsx"]);
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `studies/studyIdentifier/isa.investigation.xlsx`.
- */
-function Study_tryDatamapFileNameFromIdentifier(identifier) {
-    if (tryCheckValidCharacters(identifier)) {
-        return (0, Path_js_1.combineMany)(["studies", identifier, "isa.datamap.xlsx"]);
-    }
-    else {
-        return undefined;
-    }
-}
-/**
- * On read-in the FileName can be any combination of "workflows" (workflow folder name), workflowIdentifier and "isa.workflow.xlsx" (the actual file name).
- *
- * This functions extracts workflowIdentifier from any of these combinations and returns it.
- */
-function Workflow_identifierFromFileName(fileName) {
-    const activePatternResult = (0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)("^(workflows(\\/|\\\\))?(?<identifier>[a-zA-Z0-9_\\- ]+)((\\/|\\\\)isa.workflow.xlsx)?$", fileName);
-    if (activePatternResult != null) {
-        const m = (0, Option_js_1.value)(activePatternResult);
-        return (m.groups && m.groups.identifier) || "";
-    }
-    else {
-        throw new Error(`Cannot parse workflow identifier from FileName \`${fileName}\``);
-    }
-}
-/**
- * On read-in the FileName can be any combination of "workflows" (workflow folder name), workflowIdentifier and "isa.workflow.xlsx" (the actual file name).
- *
- * This functions extracts workflowIdentifier from any of these combinations and returns it.
- */
-function Workflow_tryIdentifierFromFileName(fileName) {
-    const activePatternResult = (0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)("^(workflows(\\/|\\\\))?(?<identifier>[a-zA-Z0-9_\\- ]+)((\\/|\\\\)isa.workflow.xlsx)?$", fileName);
-    if (activePatternResult != null) {
-        const m = (0, Option_js_1.value)(activePatternResult);
-        return (m.groups && m.groups.identifier) || "";
-    }
-    else {
-        return undefined;
-    }
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `workflows/workflowIdentifier/isa.workflow.xlsx`.
- */
-function Workflow_fileNameFromIdentifier(identifier) {
-    checkValidCharacters(identifier);
-    return (0, Path_js_1.combineMany)(["workflows", identifier, "isa.workflow.xlsx"]);
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `workflows/workflowIdentifier/isa.workflow.xlsx`.
- */
-function Workflow_tryFileNameFromIdentifier(identifier) {
-    if (tryCheckValidCharacters(identifier)) {
-        return (0, Path_js_1.combineMany)(["workflows", identifier, "isa.workflow.xlsx"]);
-    }
-    else {
-        return undefined;
-    }
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `workflows/workflowIdentifier/isa.datamap.xlsx`.
- */
-function Workflow_datamapFileNameFromIdentifier(identifier) {
-    checkValidCharacters(identifier);
-    return (0, Path_js_1.combineMany)(["workflows", identifier, "isa.datamap.xlsx"]);
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `workflows/workflowIdentifier/isa.datamap.xlsx`.
- */
-function Workflow_tryDatamapFileNameFromIdentifier(identifier) {
-    if (tryCheckValidCharacters(identifier)) {
-        return (0, Path_js_1.combineMany)(["workflows", identifier, "isa.datamap.xlsx"]);
-    }
-    else {
-        return undefined;
-    }
-}
-/**
- * On read-in the FileName can be any combination of "runs" (run folder name), runIdentifier and "isa.run.xlsx" (the actual file name).
- *
- * This functions extracts runIdentifier from any of these combinations and returns it.
- */
-function Run_identifierFromFileName(fileName) {
-    const activePatternResult = (0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)("^(runs(\\/|\\\\))?(?<identifier>[a-zA-Z0-9_\\- ]+)((\\/|\\\\)isa.run.xlsx)?$", fileName);
-    if (activePatternResult != null) {
-        const m = (0, Option_js_1.value)(activePatternResult);
-        return (m.groups && m.groups.identifier) || "";
-    }
-    else {
-        throw new Error(`Cannot parse run identifier from FileName \`${fileName}\``);
-    }
-}
-/**
- * On read-in the FileName can be any combination of "runs" (run folder name), runIdentifier and "isa.run.xlsx" (the actual file name).
- *
- * This functions extracts runIdentifier from any of these combinations and returns it.
- */
-function Run_tryIdentifierFromFileName(fileName) {
-    const activePatternResult = (0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)("^(runs(\\/|\\\\))?(?<identifier>[a-zA-Z0-9_\\- ]+)((\\/|\\\\)isa.run.xlsx)?$", fileName);
-    if (activePatternResult != null) {
-        const m = (0, Option_js_1.value)(activePatternResult);
-        return (m.groups && m.groups.identifier) || "";
-    }
-    else {
-        return undefined;
-    }
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `runs/runIdentifier/isa.run.xlsx`.
- */
-function Run_fileNameFromIdentifier(identifier) {
-    checkValidCharacters(identifier);
-    return (0, Path_js_1.combineMany)(["runs", identifier, "isa.run.xlsx"]);
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `runs/runIdentifier/isa.run.xlsx`.
- */
-function Run_tryFileNameFromIdentifier(identifier) {
-    if (tryCheckValidCharacters(identifier)) {
-        return (0, Path_js_1.combineMany)(["runs", identifier, "isa.run.xlsx"]);
-    }
-    else {
-        return undefined;
-    }
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `runs/runIdentifier/isa.datamap.xlsx`.
- */
-function Run_datamapFileNameFromIdentifier(identifier) {
-    checkValidCharacters(identifier);
-    return (0, Path_js_1.combineMany)(["runs", identifier, "isa.datamap.xlsx"]);
-}
-/**
- * On writing a xlsx file we unify our output to a relative path to ARC root. So: `runs/runIdentifier/isa.datamap.xlsx`.
- */
-function Run_tryDatamapFileNameFromIdentifier(identifier) {
-    if (tryCheckValidCharacters(identifier)) {
-        return (0, Path_js_1.combineMany)(["runs", identifier, "isa.datamap.xlsx"]);
-    }
-    else {
-        return undefined;
-    }
-}

package/dist/ts/cjs/ts/Core/Helper/ORCID.js

@@ -1,40 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.orcidPrefix = exports.orcidRegex = void 0;
-exports.tryGetOrcidNumber = tryGetOrcidNumber;
-exports.$007CORCID$007C_$007C = $007CORCID$007C_$007C;
-exports.tryGetOrcidURL = tryGetOrcidURL;
-const RegExp_js_1 = require("@fable-org/fable-library-js/RegExp.js");
-const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
-const Regex_js_1 = require("./Regex.js");
-exports.orcidRegex = /[0-9]{4}-[0-9]{4}-[0-9]{4}-[0-9]{3}[0-9X]/gu;
-function tryGetOrcidNumber(orcid) {
-    const m = (0, RegExp_js_1.match)(exports.orcidRegex, orcid);
-    if (m != null) {
-        return m[0];
-    }
-    else {
-        return undefined;
-    }
-}
-exports.orcidPrefix = "http://orcid.org/";
-function $007CORCID$007C_$007C(input) {
-    const activePatternResult = (0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)("[0-9]{4}-[0-9]{4}-[0-9]{4}-[0-9]{3}[0-9X]", input);
-    if (activePatternResult != null) {
-        const r = (0, Option_js_1.value)(activePatternResult);
-        return r[0];
-    }
-    else {
-        return undefined;
-    }
-}
-function tryGetOrcidURL(orcid) {
-    const activePatternResult = $007CORCID$007C_$007C(orcid);
-    if (activePatternResult != null) {
-        const orcid_1 = (0, Option_js_1.value)(activePatternResult);
-        return `${exports.orcidPrefix}${orcid_1}`;
-    }
-    else {
-        return undefined;
-    }
-}

package/dist/ts/cjs/ts/Core/Helper/Printer.js

@@ -1,2 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });