@nfdi4plants/arctrl 3.0.0-beta.2 → 3.0.0-beta.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1439) hide show
  1. package/dist/ts/__vite-browser-external-2447137e.js +4 -0
  2. package/dist/ts/__vite-browser-external-b3701507.cjs +1 -0
  3. package/dist/ts/arctrl.cjs.js +5691 -0
  4. package/dist/ts/arctrl.es.js +35562 -0
  5. package/dist/ts/arctrl.umd.js +5691 -0
  6. package/dist/ts/index.d.ts +61 -0
  7. package/dist/ts/index.d.ts.map +1 -0
  8. package/dist/ts/ts/ARC.d.ts +80 -0
  9. package/dist/ts/ts/ARC.d.ts.map +1 -0
  10. package/dist/ts/ts/Contract/ARC.d.ts +7 -0
  11. package/dist/ts/ts/Contract/ARC.d.ts.map +1 -0
  12. package/dist/ts/ts/Contract/ArcAssay.d.ts +12 -0
  13. package/dist/ts/ts/Contract/ArcAssay.d.ts.map +1 -0
  14. package/dist/ts/ts/Contract/ArcInvestigation.d.ts +10 -0
  15. package/dist/ts/ts/Contract/ArcInvestigation.d.ts.map +1 -0
  16. package/dist/ts/ts/Contract/ArcRun.d.ts +12 -0
  17. package/dist/ts/ts/Contract/ArcRun.d.ts.map +1 -0
  18. package/dist/ts/ts/Contract/ArcStudy.d.ts +13 -0
  19. package/dist/ts/ts/Contract/ArcStudy.d.ts.map +1 -0
  20. package/dist/ts/ts/Contract/ArcWorkflow.d.ts +12 -0
  21. package/dist/ts/ts/Contract/ArcWorkflow.d.ts.map +1 -0
  22. package/dist/ts/ts/Contract/Contract.d.ts +39 -0
  23. package/dist/ts/ts/Contract/Contract.d.ts.map +1 -0
  24. package/dist/ts/ts/Contract/Datamap.d.ts +29 -0
  25. package/dist/ts/ts/Contract/Datamap.d.ts.map +1 -0
  26. package/dist/ts/ts/Contract/Git.d.ts +28 -0
  27. package/dist/ts/ts/Contract/Git.d.ts.map +1 -0
  28. package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts +12 -0
  29. package/dist/ts/ts/Contract/ValidationPackagesConfig.d.ts.map +1 -0
  30. package/dist/ts/ts/ContractIO/ContractIO.d.ts +11 -0
  31. package/dist/ts/ts/ContractIO/ContractIO.d.ts.map +1 -0
  32. package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts +44 -0
  33. package/dist/ts/ts/ContractIO/FileSystemHelper.d.ts.map +1 -0
  34. package/dist/ts/ts/Conversion.d.ts +292 -0
  35. package/dist/ts/ts/Conversion.d.ts.map +1 -0
  36. package/dist/ts/ts/Core/ArcTypes.d.ts +620 -0
  37. package/dist/ts/ts/Core/ArcTypes.d.ts.map +1 -0
  38. package/dist/ts/ts/Core/Comment.d.ts +35 -0
  39. package/dist/ts/ts/Core/Comment.d.ts.map +1 -0
  40. package/dist/ts/ts/Core/CommentList.d.ts +28 -0
  41. package/dist/ts/ts/Core/CommentList.d.ts.map +1 -0
  42. package/dist/ts/ts/Core/Conversion.d.ts +215 -0
  43. package/dist/ts/ts/Core/Conversion.d.ts.map +1 -0
  44. package/dist/ts/ts/Core/Data.d.ts +49 -0
  45. package/dist/ts/ts/Core/Data.d.ts.map +1 -0
  46. package/dist/ts/ts/Core/DataContext.d.ts +47 -0
  47. package/dist/ts/ts/Core/DataContext.d.ts.map +1 -0
  48. package/dist/ts/ts/Core/DataFile.d.ts +27 -0
  49. package/dist/ts/ts/Core/DataFile.d.ts.map +1 -0
  50. package/dist/ts/ts/Core/DataMap.d.ts +52 -0
  51. package/dist/ts/ts/Core/DataMap.d.ts.map +1 -0
  52. package/dist/ts/ts/Core/Helper/Collections.d.ts +61 -0
  53. package/dist/ts/ts/Core/Helper/Collections.d.ts.map +1 -0
  54. package/dist/ts/ts/Core/Helper/HashCodes.d.ts +9 -0
  55. package/dist/ts/ts/Core/Helper/HashCodes.d.ts.map +1 -0
  56. package/dist/ts/ts/Core/Helper/Identifier.d.ts +119 -0
  57. package/dist/ts/ts/Core/Helper/Identifier.d.ts.map +1 -0
  58. package/dist/ts/ts/Core/Helper/ORCID.d.ts +7 -0
  59. package/dist/ts/ts/Core/Helper/ORCID.d.ts.map +1 -0
  60. package/dist/ts/ts/Core/Helper/Regex.d.ts +194 -0
  61. package/dist/ts/ts/Core/Helper/Regex.d.ts.map +1 -0
  62. package/dist/ts/ts/Core/Helper/SemVer.d.ts +20 -0
  63. package/dist/ts/ts/Core/Helper/SemVer.d.ts.map +1 -0
  64. package/dist/ts/ts/Core/Helper/Url.d.ts +10 -0
  65. package/dist/ts/ts/Core/Helper/Url.d.ts.map +1 -0
  66. package/dist/ts/ts/Core/IdentifierSetters.d.ts +7 -0
  67. package/dist/ts/ts/Core/IdentifierSetters.d.ts.map +1 -0
  68. package/dist/ts/ts/Core/OntologyAnnotation.d.ts +57 -0
  69. package/dist/ts/ts/Core/OntologyAnnotation.d.ts.map +1 -0
  70. package/dist/ts/ts/Core/OntologySourceReference.d.ts +31 -0
  71. package/dist/ts/ts/Core/OntologySourceReference.d.ts.map +1 -0
  72. package/dist/ts/ts/Core/Person.d.ts +56 -0
  73. package/dist/ts/ts/Core/Person.d.ts.map +1 -0
  74. package/dist/ts/ts/Core/Process/ColumnIndex.d.ts +79 -0
  75. package/dist/ts/ts/Core/Process/ColumnIndex.d.ts.map +1 -0
  76. package/dist/ts/ts/Core/Process/Component.d.ts +65 -0
  77. package/dist/ts/ts/Core/Process/Component.d.ts.map +1 -0
  78. package/dist/ts/ts/Core/Process/Factor.d.ts +44 -0
  79. package/dist/ts/ts/Core/Process/Factor.d.ts.map +1 -0
  80. package/dist/ts/ts/Core/Process/FactorValue.d.ts +44 -0
  81. package/dist/ts/ts/Core/Process/FactorValue.d.ts.map +1 -0
  82. package/dist/ts/ts/Core/Process/Material.d.ts +27 -0
  83. package/dist/ts/ts/Core/Process/Material.d.ts.map +1 -0
  84. package/dist/ts/ts/Core/Process/MaterialAttribute.d.ts +53 -0
  85. package/dist/ts/ts/Core/Process/MaterialAttribute.d.ts.map +1 -0
  86. package/dist/ts/ts/Core/Process/MaterialAttributeValue.d.ts +55 -0
  87. package/dist/ts/ts/Core/Process/MaterialAttributeValue.d.ts.map +1 -0
  88. package/dist/ts/ts/Core/Process/MaterialType.d.ts +22 -0
  89. package/dist/ts/ts/Core/Process/MaterialType.d.ts.map +1 -0
  90. package/dist/ts/ts/Core/Process/Process.d.ts +113 -0
  91. package/dist/ts/ts/Core/Process/Process.d.ts.map +1 -0
  92. package/dist/ts/ts/Core/Process/ProcessInput.d.ts +117 -0
  93. package/dist/ts/ts/Core/Process/ProcessInput.d.ts.map +1 -0
  94. package/dist/ts/ts/Core/Process/ProcessOutput.d.ts +106 -0
  95. package/dist/ts/ts/Core/Process/ProcessOutput.d.ts.map +1 -0
  96. package/dist/ts/ts/Core/Process/ProcessParameterValue.d.ts +40 -0
  97. package/dist/ts/ts/Core/Process/ProcessParameterValue.d.ts.map +1 -0
  98. package/dist/ts/ts/Core/Process/ProcessSequence.d.ts +89 -0
  99. package/dist/ts/ts/Core/Process/ProcessSequence.d.ts.map +1 -0
  100. package/dist/ts/ts/Core/Process/Protocol.d.ts +141 -0
  101. package/dist/ts/ts/Core/Process/Protocol.d.ts.map +1 -0
  102. package/dist/ts/ts/Core/Process/ProtocolParameter.d.ts +32 -0
  103. package/dist/ts/ts/Core/Process/ProtocolParameter.d.ts.map +1 -0
  104. package/dist/ts/ts/Core/Process/Sample.d.ts +31 -0
  105. package/dist/ts/ts/Core/Process/Sample.d.ts.map +1 -0
  106. package/dist/ts/ts/Core/Process/Source.d.ts +24 -0
  107. package/dist/ts/ts/Core/Process/Source.d.ts.map +1 -0
  108. package/dist/ts/ts/Core/Publication.d.ts +36 -0
  109. package/dist/ts/ts/Core/Publication.d.ts.map +1 -0
  110. package/dist/ts/ts/Core/Table/ArcTable.d.ts +137 -0
  111. package/dist/ts/ts/Core/Table/ArcTable.d.ts.map +1 -0
  112. package/dist/ts/ts/Core/Table/ArcTableAux.d.ts +154 -0
  113. package/dist/ts/ts/Core/Table/ArcTableAux.d.ts.map +1 -0
  114. package/dist/ts/ts/Core/Table/ArcTables.d.ts +91 -0
  115. package/dist/ts/ts/Core/Table/ArcTables.d.ts.map +1 -0
  116. package/dist/ts/ts/Core/Table/CompositeCell.d.ts +58 -0
  117. package/dist/ts/ts/Core/Table/CompositeCell.d.ts.map +1 -0
  118. package/dist/ts/ts/Core/Table/CompositeColumn.d.ts +19 -0
  119. package/dist/ts/ts/Core/Table/CompositeColumn.d.ts.map +1 -0
  120. package/dist/ts/ts/Core/Table/CompositeHeader.d.ts +130 -0
  121. package/dist/ts/ts/Core/Table/CompositeHeader.d.ts.map +1 -0
  122. package/dist/ts/ts/Core/Template.d.ts +69 -0
  123. package/dist/ts/ts/Core/Template.d.ts.map +1 -0
  124. package/dist/ts/ts/Core/Templates.d.ts +18 -0
  125. package/dist/ts/ts/Core/Templates.d.ts.map +1 -0
  126. package/dist/ts/ts/Core/URI.d.ts.map +1 -0
  127. package/dist/ts/ts/Core/Value.d.ts +41 -0
  128. package/dist/ts/ts/Core/Value.d.ts.map +1 -0
  129. package/dist/ts/ts/CrossAsync.d.ts +9 -0
  130. package/dist/ts/ts/CrossAsync.d.ts.map +1 -0
  131. package/dist/ts/ts/FileSystem/Commit.d.ts +13 -0
  132. package/dist/ts/ts/FileSystem/Commit.d.ts.map +1 -0
  133. package/dist/ts/ts/FileSystem/DefaultGitattributes.d.ts.map +1 -0
  134. package/dist/ts/ts/FileSystem/DefaultGitignore.d.ts.map +1 -0
  135. package/dist/ts/ts/FileSystem/FileSystem.d.ts +21 -0
  136. package/dist/ts/ts/FileSystem/FileSystem.d.ts.map +1 -0
  137. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts +55 -0
  138. package/dist/ts/ts/FileSystem/FileSystemTree.d.ts.map +1 -0
  139. package/dist/ts/ts/FileSystem/Path.d.ts.map +1 -0
  140. package/dist/ts/ts/Json/Assay.d.ts +19 -0
  141. package/dist/ts/ts/Json/Assay.d.ts.map +1 -0
  142. package/dist/ts/ts/Json/Comment.d.ts +14 -0
  143. package/dist/ts/ts/Json/Comment.d.ts.map +1 -0
  144. package/dist/ts/ts/Json/Data.d.ts +17 -0
  145. package/dist/ts/ts/Json/Data.d.ts.map +1 -0
  146. package/dist/ts/ts/Json/DataFile.d.ts +7 -0
  147. package/dist/ts/ts/Json/DataFile.d.ts.map +1 -0
  148. package/dist/ts/ts/Json/DataMap/DataContext.d.ts +5 -0
  149. package/dist/ts/ts/Json/DataMap/DataContext.d.ts.map +1 -0
  150. package/dist/ts/ts/Json/DataMap/DataMap.d.ts +11 -0
  151. package/dist/ts/ts/Json/DataMap/DataMap.d.ts.map +1 -0
  152. package/dist/ts/ts/Json/Decode.d.ts +18 -0
  153. package/dist/ts/ts/Json/Decode.d.ts.map +1 -0
  154. package/dist/ts/ts/Json/Encode.d.ts +23 -0
  155. package/dist/ts/ts/Json/Encode.d.ts.map +1 -0
  156. package/dist/ts/ts/Json/IDTable.d.ts +5 -0
  157. package/dist/ts/ts/Json/IDTable.d.ts.map +1 -0
  158. package/dist/ts/ts/Json/Investigation.d.ts +20 -0
  159. package/dist/ts/ts/Json/Investigation.d.ts.map +1 -0
  160. package/dist/ts/ts/Json/OntologyAnnotation.d.ts +18 -0
  161. package/dist/ts/ts/Json/OntologyAnnotation.d.ts.map +1 -0
  162. package/dist/ts/ts/Json/OntologySourceReference.d.ts +12 -0
  163. package/dist/ts/ts/Json/OntologySourceReference.d.ts.map +1 -0
  164. package/dist/ts/ts/Json/Person.d.ts +22 -0
  165. package/dist/ts/ts/Json/Person.d.ts.map +1 -0
  166. package/dist/ts/ts/Json/Process/AssayMaterials.d.ts +7 -0
  167. package/dist/ts/ts/Json/Process/AssayMaterials.d.ts.map +1 -0
  168. package/dist/ts/ts/Json/Process/Component.d.ts +11 -0
  169. package/dist/ts/ts/Json/Process/Component.d.ts.map +1 -0
  170. package/dist/ts/ts/Json/Process/Factor.d.ts +8 -0
  171. package/dist/ts/ts/Json/Process/Factor.d.ts.map +1 -0
  172. package/dist/ts/ts/Json/Process/FactorValue.d.ts +11 -0
  173. package/dist/ts/ts/Json/Process/FactorValue.d.ts.map +1 -0
  174. package/dist/ts/ts/Json/Process/Material.d.ts +12 -0
  175. package/dist/ts/ts/Json/Process/Material.d.ts.map +1 -0
  176. package/dist/ts/ts/Json/Process/MaterialAttribute.d.ts +8 -0
  177. package/dist/ts/ts/Json/Process/MaterialAttribute.d.ts.map +1 -0
  178. package/dist/ts/ts/Json/Process/MaterialAttributeValue.d.ts +11 -0
  179. package/dist/ts/ts/Json/Process/MaterialAttributeValue.d.ts.map +1 -0
  180. package/dist/ts/ts/Json/Process/MaterialType.d.ts +7 -0
  181. package/dist/ts/ts/Json/Process/MaterialType.d.ts.map +1 -0
  182. package/dist/ts/ts/Json/Process/Process.d.ts +10 -0
  183. package/dist/ts/ts/Json/Process/Process.d.ts.map +1 -0
  184. package/dist/ts/ts/Json/Process/ProcessInput.d.ts +9 -0
  185. package/dist/ts/ts/Json/Process/ProcessInput.d.ts.map +1 -0
  186. package/dist/ts/ts/Json/Process/ProcessOutput.d.ts +9 -0
  187. package/dist/ts/ts/Json/Process/ProcessOutput.d.ts.map +1 -0
  188. package/dist/ts/ts/Json/Process/ProcessParameterValue.d.ts +11 -0
  189. package/dist/ts/ts/Json/Process/ProcessParameterValue.d.ts.map +1 -0
  190. package/dist/ts/ts/Json/Process/Protocol.d.ts +10 -0
  191. package/dist/ts/ts/Json/Process/Protocol.d.ts.map +1 -0
  192. package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts +8 -0
  193. package/dist/ts/ts/Json/Process/ProtocolParameter.d.ts.map +1 -0
  194. package/dist/ts/ts/Json/Process/Sample.d.ts +15 -0
  195. package/dist/ts/ts/Json/Process/Sample.d.ts.map +1 -0
  196. package/dist/ts/ts/Json/Process/Source.d.ts +12 -0
  197. package/dist/ts/ts/Json/Process/Source.d.ts.map +1 -0
  198. package/dist/ts/ts/Json/Process/StudyMaterials.d.ts +7 -0
  199. package/dist/ts/ts/Json/Process/StudyMaterials.d.ts.map +1 -0
  200. package/dist/ts/ts/Json/Process/Value.d.ts +7 -0
  201. package/dist/ts/ts/Json/Process/Value.d.ts.map +1 -0
  202. package/dist/ts/ts/Json/PropertyValue.d.ts +9 -0
  203. package/dist/ts/ts/Json/PropertyValue.d.ts.map +1 -0
  204. package/dist/ts/ts/Json/Publication.d.ts +14 -0
  205. package/dist/ts/ts/Json/Publication.d.ts.map +1 -0
  206. package/dist/ts/ts/Json/ROCrate/LDContext.d.ts +5 -0
  207. package/dist/ts/ts/Json/ROCrate/LDContext.d.ts.map +1 -0
  208. package/dist/ts/ts/Json/ROCrate/LDGraph.d.ts +5 -0
  209. package/dist/ts/ts/Json/ROCrate/LDGraph.d.ts.map +1 -0
  210. package/dist/ts/ts/Json/ROCrate/LDNode.d.ts +13 -0
  211. package/dist/ts/ts/Json/ROCrate/LDNode.d.ts.map +1 -0
  212. package/dist/ts/ts/Json/ROCrate/LDRef.d.ts +5 -0
  213. package/dist/ts/ts/Json/ROCrate/LDRef.d.ts.map +1 -0
  214. package/dist/ts/ts/Json/ROCrate/LDValue.d.ts +7 -0
  215. package/dist/ts/ts/Json/ROCrate/LDValue.d.ts.map +1 -0
  216. package/dist/ts/ts/Json/StringTable.d.ts +9 -0
  217. package/dist/ts/ts/Json/StringTable.d.ts.map +1 -0
  218. package/dist/ts/ts/Json/Study.d.ts +26 -0
  219. package/dist/ts/ts/Json/Study.d.ts.map +1 -0
  220. package/dist/ts/ts/Json/Table/ArcTable.d.ts +15 -0
  221. package/dist/ts/ts/Json/Table/ArcTable.d.ts.map +1 -0
  222. package/dist/ts/ts/Json/Table/CellTable.d.ts +11 -0
  223. package/dist/ts/ts/Json/Table/CellTable.d.ts.map +1 -0
  224. package/dist/ts/ts/Json/Table/CompositeCell.d.ts +10 -0
  225. package/dist/ts/ts/Json/Table/CompositeCell.d.ts.map +1 -0
  226. package/dist/ts/ts/Json/Table/CompositeHeader.d.ts +5 -0
  227. package/dist/ts/ts/Json/Table/CompositeHeader.d.ts.map +1 -0
  228. package/dist/ts/ts/Json/Table/IOType.d.ts +5 -0
  229. package/dist/ts/ts/Json/Table/IOType.d.ts.map +1 -0
  230. package/dist/ts/ts/Json/Table/OATable.d.ts +10 -0
  231. package/dist/ts/ts/Json/Table/OATable.d.ts.map +1 -0
  232. package/dist/ts/ts/Json/Table/Templates.d.ts +15 -0
  233. package/dist/ts/ts/Json/Table/Templates.d.ts.map +1 -0
  234. package/dist/ts/ts/Json/context/rocrate/isa_assay_context.d.ts +26 -0
  235. package/dist/ts/ts/Json/context/rocrate/isa_assay_context.d.ts.map +1 -0
  236. package/dist/ts/ts/Json/context/rocrate/isa_comment_context.d.ts +16 -0
  237. package/dist/ts/ts/Json/context/rocrate/isa_comment_context.d.ts.map +1 -0
  238. package/dist/ts/ts/Json/context/rocrate/isa_data_context.d.ts +18 -0
  239. package/dist/ts/ts/Json/context/rocrate/isa_data_context.d.ts.map +1 -0
  240. package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.d.ts +26 -0
  241. package/dist/ts/ts/Json/context/rocrate/isa_investigation_context.d.ts.map +1 -0
  242. package/dist/ts/ts/Json/context/rocrate/isa_material_context.d.ts +19 -0
  243. package/dist/ts/ts/Json/context/rocrate/isa_material_context.d.ts.map +1 -0
  244. package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.d.ts +17 -0
  245. package/dist/ts/ts/Json/context/rocrate/isa_ontology_annotation_context.d.ts.map +1 -0
  246. package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.d.ts +19 -0
  247. package/dist/ts/ts/Json/context/rocrate/isa_ontology_source_reference_context.d.ts.map +1 -0
  248. package/dist/ts/ts/Json/context/rocrate/isa_organization_context.d.ts +15 -0
  249. package/dist/ts/ts/Json/context/rocrate/isa_organization_context.d.ts.map +1 -0
  250. package/dist/ts/ts/Json/context/rocrate/isa_person_context.d.ts +25 -0
  251. package/dist/ts/ts/Json/context/rocrate/isa_person_context.d.ts.map +1 -0
  252. package/dist/ts/ts/Json/context/rocrate/isa_process_context.d.ts +23 -0
  253. package/dist/ts/ts/Json/context/rocrate/isa_process_context.d.ts.map +1 -0
  254. package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.d.ts +22 -0
  255. package/dist/ts/ts/Json/context/rocrate/isa_protocol_context.d.ts.map +1 -0
  256. package/dist/ts/ts/Json/context/rocrate/isa_publication_context.d.ts +19 -0
  257. package/dist/ts/ts/Json/context/rocrate/isa_publication_context.d.ts.map +1 -0
  258. package/dist/ts/ts/Json/context/rocrate/isa_sample_context.d.ts +18 -0
  259. package/dist/ts/ts/Json/context/rocrate/isa_sample_context.d.ts.map +1 -0
  260. package/dist/ts/ts/Json/context/rocrate/isa_source_context.d.ts +18 -0
  261. package/dist/ts/ts/Json/context/rocrate/isa_source_context.d.ts.map +1 -0
  262. package/dist/ts/ts/Json/context/rocrate/isa_study_context.d.ts +34 -0
  263. package/dist/ts/ts/Json/context/rocrate/isa_study_context.d.ts.map +1 -0
  264. package/dist/ts/ts/Json/context/rocrate/property_value_context.d.ts +3 -0
  265. package/dist/ts/ts/Json/context/rocrate/property_value_context.d.ts.map +1 -0
  266. package/dist/ts/ts/Json/context/rocrate/rocrate_context.d.ts +16 -0
  267. package/dist/ts/ts/Json/context/rocrate/rocrate_context.d.ts.map +1 -0
  268. package/dist/ts/ts/Json.d.ts +90 -0
  269. package/dist/ts/ts/Json.d.ts.map +1 -0
  270. package/dist/ts/ts/JsonIO/Assay.d.ts +19 -0
  271. package/dist/ts/ts/JsonIO/Assay.d.ts.map +1 -0
  272. package/dist/ts/ts/JsonIO/Investigation.d.ts +19 -0
  273. package/dist/ts/ts/JsonIO/Investigation.d.ts.map +1 -0
  274. package/dist/ts/ts/JsonIO/LDObject.d.ts +29 -0
  275. package/dist/ts/ts/JsonIO/LDObject.d.ts.map +1 -0
  276. package/dist/ts/ts/JsonIO/OntologyAnnotation.d.ts +16 -0
  277. package/dist/ts/ts/JsonIO/OntologyAnnotation.d.ts.map +1 -0
  278. package/dist/ts/ts/JsonIO/Study.d.ts +20 -0
  279. package/dist/ts/ts/JsonIO/Study.d.ts.map +1 -0
  280. package/dist/ts/ts/JsonIO/Table/Compression.d.ts +8 -0
  281. package/dist/ts/ts/JsonIO/Table/Compression.d.ts.map +1 -0
  282. package/dist/ts/ts/JsonIO/Table/Templates.d.ts +15 -0
  283. package/dist/ts/ts/JsonIO/Table/Templates.d.ts.map +1 -0
  284. package/dist/ts/ts/ROCrate/Generic/Comment.d.ts +21 -0
  285. package/dist/ts/ts/ROCrate/Generic/Comment.d.ts.map +1 -0
  286. package/dist/ts/ts/ROCrate/Generic/Dataset.d.ts +92 -0
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  1313. package/dist/ts/types/ts/fable_modules/DynamicObj.7.0.1/ReflectionUtils.fs.d.ts +0 -15
  1314. package/dist/ts/types/ts/fable_modules/DynamicObj.7.0.1/ReflectionUtils.fs.d.ts.map +0 -1
  1315. package/dist/ts/types/ts/fable_modules/Fable.Exceljs.1.6.0/Cell.fs.d.ts +0 -34
  1316. package/dist/ts/types/ts/fable_modules/Fable.Exceljs.1.6.0/Cell.fs.d.ts.map +0 -1
  1317. package/dist/ts/types/ts/fable_modules/Fable.Exceljs.1.6.0/Column.fs.d.ts +0 -14
  1318. package/dist/ts/types/ts/fable_modules/Fable.Exceljs.1.6.0/Column.fs.d.ts.map +0 -1
  1319. package/dist/ts/types/ts/fable_modules/Fable.Exceljs.1.6.0/ExcelJs.fs.d.ts +0 -4
  1320. package/dist/ts/types/ts/fable_modules/Fable.Exceljs.1.6.0/ExcelJs.fs.d.ts.map +0 -1
  1321. package/dist/ts/types/ts/fable_modules/Fable.Exceljs.1.6.0/Row.fs.d.ts +0 -30
  1322. package/dist/ts/types/ts/fable_modules/Fable.Exceljs.1.6.0/Row.fs.d.ts.map +0 -1
  1323. package/dist/ts/types/ts/fable_modules/Fable.Exceljs.1.6.0/Unions.fs.d.ts +0 -49
  1324. package/dist/ts/types/ts/fable_modules/Fable.Exceljs.1.6.0/Unions.fs.d.ts.map +0 -1
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  1330. package/dist/ts/types/ts/fable_modules/Fable.Exceljs.1.6.0/Xlsx.fs.d.ts.map +0 -1
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  1344. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Cells/FsCellsCollection.fs.d.ts.map +0 -1
  1345. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/DSL/CellBuilder.fs.d.ts +0 -36
  1346. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/DSL/CellBuilder.fs.d.ts.map +0 -1
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  1365. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Json/Column.fs.d.ts +0 -9
  1366. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Json/Column.fs.d.ts.map +0 -1
  1367. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Json/Row.fs.d.ts +0 -9
  1368. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Json/Row.fs.d.ts.map +0 -1
  1369. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Json/Table.fs.d.ts +0 -5
  1370. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Json/Table.fs.d.ts.map +0 -1
  1371. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Json/Value.fs.d.ts +0 -6
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  1373. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Json/Workbook.fs.d.ts +0 -7
  1374. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Json/Workbook.fs.d.ts.map +0 -1
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  1376. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Json/Worksheet.fs.d.ts.map +0 -1
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  1378. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Ranges/FsRange.fs.d.ts.map +0 -1
  1379. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Ranges/FsRangeAddress.fs.d.ts +0 -94
  1380. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Ranges/FsRangeAddress.fs.d.ts.map +0 -1
  1381. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Ranges/FsRangeBase.fs.d.ts +0 -33
  1382. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Ranges/FsRangeBase.fs.d.ts.map +0 -1
  1383. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Ranges/FsRangeColumn.fs.d.ts +0 -31
  1384. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Ranges/FsRangeColumn.fs.d.ts.map +0 -1
  1385. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Ranges/FsRangeRow.fs.d.ts +0 -17
  1386. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Ranges/FsRangeRow.fs.d.ts.map +0 -1
  1387. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Tables/FsTable.fs.d.ts +0 -71
  1388. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Tables/FsTable.fs.d.ts.map +0 -1
  1389. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Tables/FsTableField.fs.d.ts +0 -89
  1390. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.6.3.1/Tables/FsTableField.fs.d.ts.map +0 -1
  1391. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Cell.fs.d.ts +0 -10
  1392. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Cell.fs.d.ts.map +0 -1
  1393. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/FsExtensions.fs.d.ts +0 -19
  1394. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/FsExtensions.fs.d.ts.map +0 -1
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  1396. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Json.fs.d.ts.map +0 -1
  1397. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Table.fs.d.ts +0 -6
  1398. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Table.fs.d.ts.map +0 -1
  1399. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Workbook.fs.d.ts +0 -5
  1400. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Workbook.fs.d.ts.map +0 -1
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  1402. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Worksheet.fs.d.ts.map +0 -1
  1403. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Xlsx.fs.d.ts +0 -20
  1404. package/dist/ts/types/ts/fable_modules/FsSpreadsheet.Js.6.3.1/Xlsx.fs.d.ts.map +0 -1
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  1406. package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Decode.fs.d.ts.map +0 -1
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  1408. package/dist/ts/types/ts/fable_modules/Thoth.Json.Core.0.4.0/Encode.fs.d.ts.map +0 -1
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  1414. package/dist/ts/types/ts/fable_modules/Thoth.Json.JavaScript.0.3.0/Encode.fs.d.ts.map +0 -1
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  1416. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Decode.fs.d.ts.map +0 -1
  1417. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Encode.fs.d.ts +0 -24
  1418. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Encode.fs.d.ts.map +0 -1
  1419. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Interop/JsInterop.fs.d.ts +0 -3
  1420. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Interop/JsInterop.fs.d.ts.map +0 -1
  1421. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Persil.fs.d.ts +0 -12
  1422. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Persil.fs.d.ts.map +0 -1
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  1424. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Preprocessing.fs.d.ts.map +0 -1
  1425. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Reader.fs.d.ts +0 -6
  1426. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Reader.fs.d.ts.map +0 -1
  1427. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Regex.fs.d.ts +0 -10
  1428. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Regex.fs.d.ts.map +0 -1
  1429. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/RegexActivePatterns.fs.d.ts +0 -46
  1430. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/RegexActivePatterns.fs.d.ts.map +0 -1
  1431. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Writer.fs.d.ts +0 -12
  1432. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/Writer.fs.d.ts.map +0 -1
  1433. package/dist/ts/types/ts/fable_modules/YAMLicious.0.0.3/YAMLiciousTypes.fs.d.ts +0 -70
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  1436. /package/dist/ts/{types/ts → ts}/FileSystem/DefaultGitattributes.d.ts +0 -0
  1437. /package/dist/ts/{types/ts → ts}/FileSystem/DefaultGitignore.d.ts +0 -0
  1438. /package/dist/ts/{types/ts → ts}/FileSystem/Path.d.ts +0 -0
  1439. /package/dist/ts/{types/ts → ts}/ROCrate/Helper.d.ts +0 -0
@@ -1,616 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.Pattern_CommentPattern = exports.Pattern_OutputPattern = exports.Pattern_InputPattern = exports.Pattern_IOTypePattern = exports.Pattern_TermAnnotationURIPattern_MS_RO_PO = exports.Pattern_TermAnnotationURIPattern_lessRestrictive = exports.Pattern_TermAnnotationURIPattern = exports.Pattern_TermAnnotationShortPattern = exports.Pattern_ExcelNumberFormat = void 0;
4
- exports.Pattern_handleGroupPatterns = Pattern_handleGroupPatterns;
5
- exports.ActivePatterns_$007CRegex$007C_$007C = ActivePatterns_$007CRegex$007C_$007C;
6
- exports.ActivePatterns_$007CReferenceColumnHeader$007C_$007C = ActivePatterns_$007CReferenceColumnHeader$007C_$007C;
7
- exports.ActivePatterns_$007CTermColumn$007C_$007C = ActivePatterns_$007CTermColumn$007C_$007C;
8
- exports.ActivePatterns_$007CUnitColumnHeader$007C_$007C = ActivePatterns_$007CUnitColumnHeader$007C_$007C;
9
- exports.ActivePatterns_$007CParameterColumnHeader$007C_$007C = ActivePatterns_$007CParameterColumnHeader$007C_$007C;
10
- exports.ActivePatterns_$007CFactorColumnHeader$007C_$007C = ActivePatterns_$007CFactorColumnHeader$007C_$007C;
11
- exports.ActivePatterns_$007CCharacteristicColumnHeader$007C_$007C = ActivePatterns_$007CCharacteristicColumnHeader$007C_$007C;
12
- exports.ActivePatterns_$007CComponentColumnHeader$007C_$007C = ActivePatterns_$007CComponentColumnHeader$007C_$007C;
13
- exports.ActivePatterns_$007CTermAnnotationShort$007C_$007C = ActivePatterns_$007CTermAnnotationShort$007C_$007C;
14
- exports.ActivePatterns_$007CTermAnnotation$007C_$007C = ActivePatterns_$007CTermAnnotation$007C_$007C;
15
- exports.ActivePatterns_$007CTSRColumnHeader$007C_$007C = ActivePatterns_$007CTSRColumnHeader$007C_$007C;
16
- exports.ActivePatterns_$007CTANColumnHeader$007C_$007C = ActivePatterns_$007CTANColumnHeader$007C_$007C;
17
- exports.ActivePatterns_$007CInputColumnHeader$007C_$007C = ActivePatterns_$007CInputColumnHeader$007C_$007C;
18
- exports.ActivePatterns_$007COutputColumnHeader$007C_$007C = ActivePatterns_$007COutputColumnHeader$007C_$007C;
19
- exports.ActivePatterns_$007CAutoGeneratedTableName$007C_$007C = ActivePatterns_$007CAutoGeneratedTableName$007C_$007C;
20
- exports.ActivePatterns_$007CComment$007C_$007C = ActivePatterns_$007CComment$007C_$007C;
21
- exports.tryParseReferenceColumnHeader = tryParseReferenceColumnHeader;
22
- exports.tryParseTermAnnotationShort = tryParseTermAnnotationShort;
23
- exports.tryParseTermAnnotation = tryParseTermAnnotation;
24
- exports.tryGetTermAnnotationShortString = tryGetTermAnnotationShortString;
25
- exports.getTermAnnotationShortString = getTermAnnotationShortString;
26
- exports.tryParseExcelNumberFormat = tryParseExcelNumberFormat;
27
- exports.tryParseIOTypeHeader = tryParseIOTypeHeader;
28
- exports.tryParseTermColumn = tryParseTermColumn;
29
- exports.tryParseUnitColumnHeader = tryParseUnitColumnHeader;
30
- exports.tryParseParameterColumnHeader = tryParseParameterColumnHeader;
31
- exports.tryParseFactorColumnHeader = tryParseFactorColumnHeader;
32
- exports.tryParseCharacteristicColumnHeader = tryParseCharacteristicColumnHeader;
33
- exports.tryParseComponentColumnHeader = tryParseComponentColumnHeader;
34
- exports.tryParseTSRColumnHeader = tryParseTSRColumnHeader;
35
- exports.tryParseTANColumnHeader = tryParseTANColumnHeader;
36
- exports.tryParseInputColumnHeader = tryParseInputColumnHeader;
37
- exports.tryParseOutputColumnHeader = tryParseOutputColumnHeader;
38
- const RegExp_js_1 = require("@fable-org/fable-library-js/RegExp.js");
39
- const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
40
- const Int32_js_1 = require("@fable-org/fable-library-js/Int32.js");
41
- function Pattern_handleGroupPatterns(pattern) {
42
- return pattern;
43
- }
44
- exports.Pattern_ExcelNumberFormat = `"(?<${"numberFormat"}>(.*?))"`;
45
- exports.Pattern_TermAnnotationShortPattern = `(?<${"idspace"}>\\w+?):(?<${"localid"}>\\w+)`;
46
- exports.Pattern_TermAnnotationURIPattern = `http://purl.obolibrary.org/obo/(?<${"idspace"}>\\w+?)_(?<${"localid"}>\\w+)`;
47
- exports.Pattern_TermAnnotationURIPattern_lessRestrictive = `.*\\/(?<${"idspace"}>\\w+?)[:_](?<${"localid"}>\\w+)`;
48
- exports.Pattern_TermAnnotationURIPattern_MS_RO_PO = `.*252F(?<${"idspace"}>\\w+?)_(?<${"localid"}>\\w+)`;
49
- exports.Pattern_IOTypePattern = `(Input|Output)\\s*\\[(?<${"iotype"}>.+)\\]`;
50
- exports.Pattern_InputPattern = `Input\\s*\\[(?<${"iotype"}>.+)\\]`;
51
- exports.Pattern_OutputPattern = `Output\\s*\\[(?<${"iotype"}>.+)\\]`;
52
- exports.Pattern_CommentPattern = `Comment\\s*\\[(?<${"commentKey"}>.+)\\]`;
53
- /**
54
- * Matches, if the input string matches the given regex pattern.
55
- */
56
- function ActivePatterns_$007CRegex$007C_$007C(pattern, input) {
57
- const m = (0, RegExp_js_1.match)((0, RegExp_js_1.create)(Pattern_handleGroupPatterns(pattern)), input.trim());
58
- if (m != null) {
59
- return m;
60
- }
61
- else {
62
- return undefined;
63
- }
64
- }
65
- /**
66
- * Matches any column header starting with some text, followed by one whitespace and a term name inside squared brackets.
67
- */
68
- function ActivePatterns_$007CReferenceColumnHeader$007C_$007C(input) {
69
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("(Term Source REF|Term Accession Number)\\s*\\((?<id>.*)\\)", input);
70
- if (activePatternResult != null) {
71
- const r = (0, Option_js_1.value)(activePatternResult);
72
- return {
73
- Annotation: (r.groups && r.groups.id) || "",
74
- };
75
- }
76
- else {
77
- return undefined;
78
- }
79
- }
80
- /**
81
- * Matches any column header starting with some text, followed by one whitespace and a term name inside squared brackets.
82
- */
83
- function ActivePatterns_$007CTermColumn$007C_$007C(input) {
84
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("(?<termcolumntype>.+?)\\s*\\[(?<termname>.+)\\]", input);
85
- if (activePatternResult != null) {
86
- const r = (0, Option_js_1.value)(activePatternResult);
87
- return {
88
- TermColumnType: (r.groups && r.groups.termcolumntype) || "",
89
- TermName: (r.groups && r.groups.termname) || "",
90
- };
91
- }
92
- else {
93
- return undefined;
94
- }
95
- }
96
- /**
97
- * Matches a "Unit" column header.
98
- */
99
- function ActivePatterns_$007CUnitColumnHeader$007C_$007C(input) {
100
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("Unit", input);
101
- if (activePatternResult != null) {
102
- const o = (0, Option_js_1.value)(activePatternResult);
103
- return o[0];
104
- }
105
- else {
106
- return undefined;
107
- }
108
- }
109
- /**
110
- * Matches a "Parameter [Term]" or "Parameter Value [Term]" column header and returns the Term string.
111
- */
112
- function ActivePatterns_$007CParameterColumnHeader$007C_$007C(input) {
113
- const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
114
- if (activePatternResult != null) {
115
- const r = (0, Option_js_1.value)(activePatternResult);
116
- const matchValue = r.TermColumnType;
117
- switch (matchValue) {
118
- case "Parameter":
119
- case "Parameter Value":
120
- return r.TermName;
121
- default:
122
- return undefined;
123
- }
124
- }
125
- else {
126
- return undefined;
127
- }
128
- }
129
- /**
130
- * Matches a "Factor [Term]" or "Factor Value [Term]" column header and returns the Term string.
131
- */
132
- function ActivePatterns_$007CFactorColumnHeader$007C_$007C(input) {
133
- const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
134
- if (activePatternResult != null) {
135
- const r = (0, Option_js_1.value)(activePatternResult);
136
- const matchValue = r.TermColumnType;
137
- switch (matchValue) {
138
- case "Factor":
139
- case "Factor Value":
140
- return r.TermName;
141
- default:
142
- return undefined;
143
- }
144
- }
145
- else {
146
- return undefined;
147
- }
148
- }
149
- /**
150
- * Matches a "Characteristic [Term]" or "Characteristics [Term]" or "Characteristics Value [Term]" column header and returns the Term string.
151
- */
152
- function ActivePatterns_$007CCharacteristicColumnHeader$007C_$007C(input) {
153
- const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
154
- if (activePatternResult != null) {
155
- const r = (0, Option_js_1.value)(activePatternResult);
156
- const matchValue = r.TermColumnType;
157
- switch (matchValue) {
158
- case "Characteristic":
159
- case "Characteristics":
160
- case "Characteristics Value":
161
- return r.TermName;
162
- default:
163
- return undefined;
164
- }
165
- }
166
- else {
167
- return undefined;
168
- }
169
- }
170
- /**
171
- * Matches a "Component [Term]" or "Component Value [Term]" column header and returns the Term string.
172
- */
173
- function ActivePatterns_$007CComponentColumnHeader$007C_$007C(input) {
174
- const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
175
- if (activePatternResult != null) {
176
- const r = (0, Option_js_1.value)(activePatternResult);
177
- const matchValue = r.TermColumnType;
178
- switch (matchValue) {
179
- case "Component":
180
- case "Component Value":
181
- return r.TermName;
182
- default:
183
- return undefined;
184
- }
185
- }
186
- else {
187
- return undefined;
188
- }
189
- }
190
- /**
191
- * Matches a short term string and returns the term source ref and the annotation number strings.
192
- *
193
- * Example: "MS:1003022" --> term source ref: "MS"; annotation number: "1003022"
194
- */
195
- function ActivePatterns_$007CTermAnnotationShort$007C_$007C(input) {
196
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_TermAnnotationShortPattern, input);
197
- if (activePatternResult != null) {
198
- const value = (0, Option_js_1.value)(activePatternResult);
199
- return {
200
- IDSpace: (value.groups && value.groups.idspace) || "",
201
- LocalID: (value.groups && value.groups.localid) || "",
202
- };
203
- }
204
- else {
205
- return undefined;
206
- }
207
- }
208
- /**
209
- * Matches a term string (either short or URI) and returns the term source ref and the annotation number strings.
210
- *
211
- * Example 1: "MS:1003022" --> term source ref: "MS"; annotation number: "1003022"
212
- *
213
- * Example 2: "http://purl.obolibrary.org/obo/MS_1003022" --> term source ref: "MS"; annotation number: "1003022"
214
- */
215
- function ActivePatterns_$007CTermAnnotation$007C_$007C(input) {
216
- let matchResult, value;
217
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_TermAnnotationShortPattern, input);
218
- if (activePatternResult != null) {
219
- matchResult = 0;
220
- value = (0, Option_js_1.value)(activePatternResult);
221
- }
222
- else {
223
- const activePatternResult_1 = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_TermAnnotationURIPattern, input);
224
- if (activePatternResult_1 != null) {
225
- matchResult = 0;
226
- value = (0, Option_js_1.value)(activePatternResult_1);
227
- }
228
- else {
229
- const activePatternResult_2 = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_TermAnnotationURIPattern_lessRestrictive, input);
230
- if (activePatternResult_2 != null) {
231
- matchResult = 0;
232
- value = (0, Option_js_1.value)(activePatternResult_2);
233
- }
234
- else {
235
- const activePatternResult_3 = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_TermAnnotationURIPattern_MS_RO_PO, input);
236
- if (activePatternResult_3 != null) {
237
- matchResult = 0;
238
- value = (0, Option_js_1.value)(activePatternResult_3);
239
- }
240
- else {
241
- matchResult = 1;
242
- }
243
- }
244
- }
245
- }
246
- switch (matchResult) {
247
- case 0:
248
- return {
249
- IDSpace: (value.groups && value.groups.idspace) || "",
250
- LocalID: (value.groups && value.groups.localid) || "",
251
- };
252
- default:
253
- return undefined;
254
- }
255
- }
256
- /**
257
- * Matches a "Term Source REF (ShortTerm)" column header and returns the ShortTerm as Term Source Ref and Annotation Number.
258
- *
259
- * Example: "Term Source REF (MS:1003022)" --> term source ref: "MS"; annotation number: "1003022"
260
- */
261
- function ActivePatterns_$007CTSRColumnHeader$007C_$007C(input) {
262
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("Term Source REF\\s*\\((?<id>.*)\\)", input);
263
- if (activePatternResult != null) {
264
- const r = (0, Option_js_1.value)(activePatternResult);
265
- const matchValue = (r.groups && r.groups.id) || "";
266
- const activePatternResult_1 = ActivePatterns_$007CTermAnnotation$007C_$007C(matchValue);
267
- if (activePatternResult_1 != null) {
268
- const r_1 = (0, Option_js_1.value)(activePatternResult_1);
269
- return r_1;
270
- }
271
- else {
272
- return {
273
- IDSpace: "",
274
- LocalID: "",
275
- };
276
- }
277
- }
278
- else {
279
- return undefined;
280
- }
281
- }
282
- /**
283
- * Matches a "Term Accession Number (ShortTerm)" column header and returns the ShortTerm as Term Source Ref and Annotation Number.
284
- *
285
- * Example: "Term Accession Number (MS:1003022)" --> term source ref: "MS"; annotation number: "1003022"
286
- */
287
- function ActivePatterns_$007CTANColumnHeader$007C_$007C(input) {
288
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("Term Accession Number\\s*\\((?<id>.*)\\)", input);
289
- if (activePatternResult != null) {
290
- const r = (0, Option_js_1.value)(activePatternResult);
291
- const matchValue = (r.groups && r.groups.id) || "";
292
- const activePatternResult_1 = ActivePatterns_$007CTermAnnotation$007C_$007C(matchValue);
293
- if (activePatternResult_1 != null) {
294
- const r_1 = (0, Option_js_1.value)(activePatternResult_1);
295
- return r_1;
296
- }
297
- else {
298
- return {
299
- IDSpace: "",
300
- LocalID: "",
301
- };
302
- }
303
- }
304
- else {
305
- return undefined;
306
- }
307
- }
308
- /**
309
- * Matches a "Input [InputType]" column header and returns the InputType as string.
310
- */
311
- function ActivePatterns_$007CInputColumnHeader$007C_$007C(input) {
312
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_InputPattern, input);
313
- if (activePatternResult != null) {
314
- const r = (0, Option_js_1.value)(activePatternResult);
315
- return (r.groups && r.groups.iotype) || "";
316
- }
317
- else {
318
- return undefined;
319
- }
320
- }
321
- /**
322
- * Matches a "Output [OutputType]" column header and returns the OutputType as string.
323
- */
324
- function ActivePatterns_$007COutputColumnHeader$007C_$007C(input) {
325
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_OutputPattern, input);
326
- if (activePatternResult != null) {
327
- const r = (0, Option_js_1.value)(activePatternResult);
328
- return (r.groups && r.groups.iotype) || "";
329
- }
330
- else {
331
- return undefined;
332
- }
333
- }
334
- /**
335
- * Matches auto-generated readable table names. Mainly used in ArcAssay.addTable(). Default tables will get such a name.
336
- *
337
- * Will match "New Table 10" and return the number `10`.
338
- */
339
- function ActivePatterns_$007CAutoGeneratedTableName$007C_$007C(input) {
340
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C("^New\\sTable\\s(?<number>\\d+)$", input);
341
- if (activePatternResult != null) {
342
- const r = (0, Option_js_1.value)(activePatternResult);
343
- return (0, Int32_js_1.parse)((r.groups && r.groups.number) || "", 511, false, 32);
344
- }
345
- else {
346
- return undefined;
347
- }
348
- }
349
- function ActivePatterns_$007CComment$007C_$007C(input) {
350
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_CommentPattern, input);
351
- if (activePatternResult != null) {
352
- const r = (0, Option_js_1.value)(activePatternResult);
353
- return (r.groups && r.groups.commentKey) || "";
354
- }
355
- else {
356
- return undefined;
357
- }
358
- }
359
- function tryParseReferenceColumnHeader(str) {
360
- const matchValue = str.trim();
361
- const activePatternResult = ActivePatterns_$007CReferenceColumnHeader$007C_$007C(matchValue);
362
- if (activePatternResult != null) {
363
- const v = (0, Option_js_1.value)(activePatternResult);
364
- return v;
365
- }
366
- else {
367
- return undefined;
368
- }
369
- }
370
- function tryParseTermAnnotationShort(str) {
371
- const matchValue = str.trim();
372
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_TermAnnotationShortPattern, matchValue);
373
- if (activePatternResult != null) {
374
- const value = (0, Option_js_1.value)(activePatternResult);
375
- return {
376
- IDSpace: (value.groups && value.groups.idspace) || "",
377
- LocalID: (value.groups && value.groups.localid) || "",
378
- };
379
- }
380
- else {
381
- return undefined;
382
- }
383
- }
384
- /**
385
- * This function can be used to extract `IDSPACE:LOCALID` (or: `Term Accession`) from Swate header strings or obofoundry conform URI strings.
386
- *
387
- * **Example 1:** "http://purl.obolibrary.org/obo/GO_000001" --> "GO:000001"
388
- *
389
- * **Example 2:** "Term Source REF (NFDI4PSO:0000064)" --> "NFDI4PSO:0000064"
390
- */
391
- function tryParseTermAnnotation(str) {
392
- const matchValue = str.trim();
393
- let matchResult, value;
394
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_TermAnnotationShortPattern, matchValue);
395
- if (activePatternResult != null) {
396
- matchResult = 0;
397
- value = (0, Option_js_1.value)(activePatternResult);
398
- }
399
- else {
400
- const activePatternResult_1 = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_TermAnnotationURIPattern, matchValue);
401
- if (activePatternResult_1 != null) {
402
- matchResult = 0;
403
- value = (0, Option_js_1.value)(activePatternResult_1);
404
- }
405
- else {
406
- const activePatternResult_2 = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_TermAnnotationURIPattern_lessRestrictive, matchValue);
407
- if (activePatternResult_2 != null) {
408
- matchResult = 0;
409
- value = (0, Option_js_1.value)(activePatternResult_2);
410
- }
411
- else {
412
- const activePatternResult_3 = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_TermAnnotationURIPattern_MS_RO_PO, matchValue);
413
- if (activePatternResult_3 != null) {
414
- matchResult = 0;
415
- value = (0, Option_js_1.value)(activePatternResult_3);
416
- }
417
- else {
418
- matchResult = 1;
419
- }
420
- }
421
- }
422
- }
423
- switch (matchResult) {
424
- case 0:
425
- return {
426
- IDSpace: (value.groups && value.groups.idspace) || "",
427
- LocalID: (value.groups && value.groups.localid) || "",
428
- };
429
- default:
430
- return undefined;
431
- }
432
- }
433
- /**
434
- * Tries to parse 'str' to term accession and returns it in the format `Some "termsourceref:localtan"`. Exmp.: `Some "MS:000001"`
435
- */
436
- function tryGetTermAnnotationShortString(str) {
437
- return (0, Option_js_1.map)((r) => ((r.IDSpace + ":") + r.LocalID), tryParseTermAnnotation(str));
438
- }
439
- /**
440
- * Parses 'str' to term accession and returns it in the format "termsourceref:localtan". Exmp.: "MS:000001"
441
- */
442
- function getTermAnnotationShortString(str) {
443
- const matchValue = tryGetTermAnnotationShortString(str);
444
- if (matchValue == null) {
445
- throw new Error(`Unable to parse '${str}' to term accession.`);
446
- }
447
- else {
448
- return (0, Option_js_1.value)(matchValue);
449
- }
450
- }
451
- /**
452
- * This function is used to parse Excel numberFormat string to term name.
453
- *
454
- * **Example 1:** "0.00 "degree Celsius"" --> "degree Celsius"
455
- */
456
- function tryParseExcelNumberFormat(headerStr) {
457
- const matchValue = headerStr.trim();
458
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_ExcelNumberFormat, matchValue);
459
- if (activePatternResult != null) {
460
- const value = (0, Option_js_1.value)(activePatternResult);
461
- return (value.groups && value.groups.numberFormat) || "";
462
- }
463
- else {
464
- return undefined;
465
- }
466
- }
467
- /**
468
- * This function is used to match both Input and Output columns and capture the IOType as `iotype` group.
469
- *
470
- * **Example 1:** "Input [Sample]" --> "Sample"
471
- */
472
- function tryParseIOTypeHeader(headerStr) {
473
- const matchValue = headerStr.trim();
474
- const activePatternResult = ActivePatterns_$007CRegex$007C_$007C(exports.Pattern_IOTypePattern, matchValue);
475
- if (activePatternResult != null) {
476
- const value = (0, Option_js_1.value)(activePatternResult);
477
- return (value.groups && value.groups.iotype) || "";
478
- }
479
- else {
480
- return undefined;
481
- }
482
- }
483
- /**
484
- * Matches any column header starting with some text, followed by one whitespace and a term name inside squared brackets.
485
- */
486
- function tryParseTermColumn(input) {
487
- const activePatternResult = ActivePatterns_$007CTermColumn$007C_$007C(input);
488
- if (activePatternResult != null) {
489
- const r = (0, Option_js_1.value)(activePatternResult);
490
- return r;
491
- }
492
- else {
493
- return undefined;
494
- }
495
- }
496
- /**
497
- * Matches a "Unit" column header.
498
- */
499
- function tryParseUnitColumnHeader(input) {
500
- const activePatternResult = ActivePatterns_$007CUnitColumnHeader$007C_$007C(input);
501
- if (activePatternResult != null) {
502
- const r = (0, Option_js_1.value)(activePatternResult);
503
- return r;
504
- }
505
- else {
506
- return undefined;
507
- }
508
- }
509
- /**
510
- * Matches a "Parameter [Term]" or "Parameter Value [Term]" column header and returns the Term string.
511
- */
512
- function tryParseParameterColumnHeader(input) {
513
- const activePatternResult = ActivePatterns_$007CParameterColumnHeader$007C_$007C(input);
514
- if (activePatternResult != null) {
515
- const r = (0, Option_js_1.value)(activePatternResult);
516
- return r;
517
- }
518
- else {
519
- return undefined;
520
- }
521
- }
522
- /**
523
- * Matches a "Factor [Term]" or "Factor Value [Term]" column header and returns the Term string.
524
- */
525
- function tryParseFactorColumnHeader(input) {
526
- const activePatternResult = ActivePatterns_$007CFactorColumnHeader$007C_$007C(input);
527
- if (activePatternResult != null) {
528
- const r = (0, Option_js_1.value)(activePatternResult);
529
- return r;
530
- }
531
- else {
532
- return undefined;
533
- }
534
- }
535
- /**
536
- * Matches a "Characteristic [Term]" or "Characteristics [Term]" or "Characteristics Value [Term]" column header and returns the Term string.
537
- */
538
- function tryParseCharacteristicColumnHeader(input) {
539
- const activePatternResult = ActivePatterns_$007CCharacteristicColumnHeader$007C_$007C(input);
540
- if (activePatternResult != null) {
541
- const r = (0, Option_js_1.value)(activePatternResult);
542
- return r;
543
- }
544
- else {
545
- return undefined;
546
- }
547
- }
548
- /**
549
- * Matches a "Component [Term]" or "Characteristics [Term]" or "Component Value [Term]" column header and returns the Term string.
550
- */
551
- function tryParseComponentColumnHeader(input) {
552
- const activePatternResult = ActivePatterns_$007CComponentColumnHeader$007C_$007C(input);
553
- if (activePatternResult != null) {
554
- const r = (0, Option_js_1.value)(activePatternResult);
555
- return r;
556
- }
557
- else {
558
- return undefined;
559
- }
560
- }
561
- /**
562
- * Matches a "Term Source REF (ShortTerm)" column header and returns the ShortTerm as Term Source Ref and Annotation Number.
563
- *
564
- * Example: "Term Source REF (MS:1003022)" --> term source ref: "MS"; annotation number: "1003022"
565
- */
566
- function tryParseTSRColumnHeader(input) {
567
- const activePatternResult = ActivePatterns_$007CTSRColumnHeader$007C_$007C(input);
568
- if (activePatternResult != null) {
569
- const r = (0, Option_js_1.value)(activePatternResult);
570
- return r;
571
- }
572
- else {
573
- return undefined;
574
- }
575
- }
576
- /**
577
- * Matches a "Term Accession Number (ShortTerm)" column header and returns the ShortTerm as Term Source Ref and Annotation Number.
578
- *
579
- * Example: "Term Accession Number (MS:1003022)" --> term source ref: "MS"; annotation number: "1003022"
580
- */
581
- function tryParseTANColumnHeader(input) {
582
- const activePatternResult = ActivePatterns_$007CTANColumnHeader$007C_$007C(input);
583
- if (activePatternResult != null) {
584
- const r = (0, Option_js_1.value)(activePatternResult);
585
- return r;
586
- }
587
- else {
588
- return undefined;
589
- }
590
- }
591
- /**
592
- * Matches a "Input [InputType]" column header and returns the InputType as string.
593
- */
594
- function tryParseInputColumnHeader(input) {
595
- const activePatternResult = ActivePatterns_$007CInputColumnHeader$007C_$007C(input);
596
- if (activePatternResult != null) {
597
- const r = (0, Option_js_1.value)(activePatternResult);
598
- return r;
599
- }
600
- else {
601
- return undefined;
602
- }
603
- }
604
- /**
605
- * Matches a "Output [OutputType]" column header and returns the OutputType as string.
606
- */
607
- function tryParseOutputColumnHeader(input) {
608
- const activePatternResult = ActivePatterns_$007COutputColumnHeader$007C_$007C(input);
609
- if (activePatternResult != null) {
610
- const r = (0, Option_js_1.value)(activePatternResult);
611
- return r;
612
- }
613
- else {
614
- return undefined;
615
- }
616
- }
@@ -1,59 +0,0 @@
1
- "use strict";
2
- Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.SemVer = exports.SemVerAux_Pattern = void 0;
4
- exports.SemVer_$reflection = SemVer_$reflection;
5
- exports.SemVer_make = SemVer_make;
6
- exports.SemVer_create_Z55658624 = SemVer_create_Z55658624;
7
- exports.SemVer_tryOfString_Z721C83C5 = SemVer_tryOfString_Z721C83C5;
8
- exports.SemVer__AsString = SemVer__AsString;
9
- const Types_js_1 = require("@fable-org/fable-library-js/Types.js");
10
- const Int32_js_1 = require("@fable-org/fable-library-js/Int32.js");
11
- const Option_js_1 = require("@fable-org/fable-library-js/Option.js");
12
- const Reflection_js_1 = require("@fable-org/fable-library-js/Reflection.js");
13
- const Regex_js_1 = require("./Regex.js");
14
- const System_Text_js_1 = require("@fable-org/fable-library-js/System.Text.js");
15
- const String_js_1 = require("@fable-org/fable-library-js/String.js");
16
- exports.SemVerAux_Pattern = "^(?<major>\\d+)(\\.(?<minor>\\d+))?(\\.(?<patch>\\d+))?(-(?<pre>[0-9A-Za-z-\\.]+))?(\\+(?<build>[0-9A-Za-z-\\.]+))?$";
17
- class SemVer extends Types_js_1.Record {
18
- constructor(Major, Minor, Patch, PreRelease, Metadata) {
19
- super();
20
- this.Major = (Major | 0);
21
- this.Minor = (Minor | 0);
22
- this.Patch = (Patch | 0);
23
- this.PreRelease = PreRelease;
24
- this.Metadata = Metadata;
25
- }
26
- }
27
- exports.SemVer = SemVer;
28
- function SemVer_$reflection() {
29
- return (0, Reflection_js_1.record_type)("ARCtrl.Helper.SemVer.SemVer", [], SemVer, () => [["Major", Reflection_js_1.int32_type], ["Minor", Reflection_js_1.int32_type], ["Patch", Reflection_js_1.int32_type], ["PreRelease", (0, Reflection_js_1.option_type)(Reflection_js_1.string_type)], ["Metadata", (0, Reflection_js_1.option_type)(Reflection_js_1.string_type)]]);
30
- }
31
- function SemVer_make(major, minor, patch, pre, meta) {
32
- return new SemVer(major, minor, patch, pre, meta);
33
- }
34
- function SemVer_create_Z55658624(major, minor, patch, pre, meta) {
35
- return new SemVer(major, minor, patch, pre, meta);
36
- }
37
- function SemVer_tryOfString_Z721C83C5(str) {
38
- const activePatternResult = (0, Regex_js_1.ActivePatterns_$007CRegex$007C_$007C)(exports.SemVerAux_Pattern, str);
39
- if (activePatternResult != null) {
40
- const m = (0, Option_js_1.value)(activePatternResult);
41
- const g = m;
42
- return SemVer_create_Z55658624((0, Int32_js_1.parse)((g.groups && g.groups.major) || "", 511, false, 32), (0, Int32_js_1.parse)((g.groups && g.groups.minor) || "", 511, false, 32), (0, Int32_js_1.parse)((g.groups && g.groups.patch) || "", 511, false, 32), (0, Option_js_1.unwrap)(((g.groups && g.groups.pre) != null) ? ((g.groups && g.groups.pre) || "") : undefined), (0, Option_js_1.unwrap)(((g.groups && g.groups.build) != null) ? ((g.groups && g.groups.build) || "") : undefined));
43
- }
44
- else {
45
- return undefined;
46
- }
47
- }
48
- function SemVer__AsString(this$) {
49
- let arg_3, arg_4;
50
- const sb = (0, System_Text_js_1.StringBuilder_$ctor)();
51
- (0, System_Text_js_1.StringBuilder__Append_Z721C83C5)(sb, (0, String_js_1.toText)((0, String_js_1.printf)("%i.%i.%i"))(this$.Major)(this$.Minor)(this$.Patch));
52
- if (this$.PreRelease != null) {
53
- (0, System_Text_js_1.StringBuilder__Append_Z721C83C5)(sb, (arg_3 = (0, Option_js_1.value)(this$.PreRelease), (0, String_js_1.toText)((0, String_js_1.printf)("-%s"))(arg_3)));
54
- }
55
- if (this$.Metadata != null) {
56
- (0, System_Text_js_1.StringBuilder__Append_Z721C83C5)(sb, (arg_4 = (0, Option_js_1.value)(this$.Metadata), (0, String_js_1.toText)((0, String_js_1.printf)("+%s"))(arg_4)));
57
- }
58
- return (0, Types_js_1.toString)(sb);
59
- }