@jbrowse/plugin-wiggle 2.17.0 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (318) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +4 -3
  2. package/dist/BigWigAdapter/BigWigAdapter.js +3 -8
  3. package/dist/BigWigAdapter/configSchema.d.ts +0 -9
  4. package/dist/BigWigAdapter/configSchema.js +1 -13
  5. package/dist/BigWigAdapter/index.d.ts +1 -1
  6. package/dist/BigWigAdapter/index.js +17 -7
  7. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
  8. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +14 -49
  9. package/dist/CreateMultiWiggleExtension/index.d.ts +1 -1
  10. package/dist/CreateMultiWiggleExtension/index.js +43 -33
  11. package/dist/DensityRenderer/DensityRenderer.d.ts +2 -1
  12. package/dist/DensityRenderer/DensityRenderer.js +35 -2
  13. package/dist/DensityRenderer/configSchema.js +1 -7
  14. package/dist/DensityRenderer/index.d.ts +1 -1
  15. package/dist/DensityRenderer/index.js +1 -1
  16. package/dist/GuessAdapter/index.d.ts +2 -0
  17. package/dist/GuessAdapter/index.js +25 -0
  18. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
  19. package/dist/LinePlotRenderer/LinePlotRenderer.js +35 -2
  20. package/dist/LinePlotRenderer/configSchema.d.ts +0 -3
  21. package/dist/LinePlotRenderer/configSchema.js +1 -10
  22. package/dist/LinePlotRenderer/index.d.ts +1 -1
  23. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
  24. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +23 -59
  25. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
  26. package/dist/LinearWiggleDisplay/components/Tooltip.js +5 -18
  27. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  28. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +11 -14
  29. package/dist/LinearWiggleDisplay/configSchema.d.ts +1 -12
  30. package/dist/LinearWiggleDisplay/configSchema.js +0 -15
  31. package/dist/LinearWiggleDisplay/index.d.ts +1 -1
  32. package/dist/LinearWiggleDisplay/index.js +18 -8
  33. package/dist/LinearWiggleDisplay/model.d.ts +44 -79
  34. package/dist/LinearWiggleDisplay/model.js +39 -71
  35. package/dist/LinearWiggleDisplay/renderSvg.d.ts +3 -4
  36. package/dist/LinearWiggleDisplay/renderSvg.js +2 -6
  37. package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
  38. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +40 -6
  39. package/dist/MultiDensityRenderer/configSchema.js +1 -7
  40. package/dist/MultiDensityRenderer/index.d.ts +1 -1
  41. package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
  42. package/dist/MultiLineRenderer/MultiLineRenderer.js +35 -3
  43. package/dist/MultiLineRenderer/configSchema.d.ts +0 -6
  44. package/dist/MultiLineRenderer/configSchema.js +1 -13
  45. package/dist/MultiLineRenderer/index.d.ts +1 -1
  46. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
  47. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
  48. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
  49. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +17 -0
  50. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
  51. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +15 -0
  52. package/dist/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
  53. package/dist/MultiLinearWiggleDisplay/components/LegendItem.js +19 -0
  54. package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
  55. package/dist/MultiLinearWiggleDisplay/components/RectBg.js +2 -5
  56. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
  57. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +2 -4
  58. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
  59. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +21 -60
  60. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
  61. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +80 -97
  62. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
  63. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
  64. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  65. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
  66. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
  67. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +7 -27
  68. package/dist/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
  69. package/dist/MultiLinearWiggleDisplay/components/util.js +1 -1
  70. package/dist/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
  71. package/dist/MultiLinearWiggleDisplay/configSchema.js +1 -19
  72. package/dist/MultiLinearWiggleDisplay/index.d.ts +1 -1
  73. package/dist/MultiLinearWiggleDisplay/index.js +18 -8
  74. package/dist/MultiLinearWiggleDisplay/model.d.ts +27 -146
  75. package/dist/MultiLinearWiggleDisplay/model.js +44 -128
  76. package/dist/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
  77. package/dist/MultiLinearWiggleDisplay/renderSvg.js +2 -5
  78. package/dist/MultiLinearWiggleDisplay/util.d.ts +1 -0
  79. package/dist/MultiLinearWiggleDisplay/util.js +10 -0
  80. package/dist/MultiQuantitativeTrack/configSchema.d.ts +1 -1
  81. package/dist/MultiQuantitativeTrack/configSchema.js +1 -7
  82. package/dist/MultiQuantitativeTrack/index.d.ts +1 -1
  83. package/dist/MultiQuantitativeTrack/index.js +1 -1
  84. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
  85. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +35 -3
  86. package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -6
  87. package/dist/MultiRowLineRenderer/configSchema.js +2 -14
  88. package/dist/MultiRowLineRenderer/index.d.ts +1 -1
  89. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
  90. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +35 -3
  91. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
  92. package/dist/MultiRowXYPlotRenderer/configSchema.js +2 -20
  93. package/dist/MultiRowXYPlotRenderer/index.d.ts +1 -1
  94. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
  95. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +8 -13
  96. package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -6
  97. package/dist/MultiWiggleAdapter/configSchema.js +1 -10
  98. package/dist/MultiWiggleAdapter/index.d.ts +1 -1
  99. package/dist/MultiWiggleAdapter/index.js +18 -8
  100. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
  101. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -104
  102. package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
  103. package/dist/MultiWiggleAddTrackWorkflow/index.js +18 -9
  104. package/dist/MultiWiggleRendering.d.ts +4 -5
  105. package/dist/MultiWiggleRendering.js +6 -29
  106. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
  107. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +36 -4
  108. package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -12
  109. package/dist/MultiXYPlotRenderer/configSchema.js +1 -19
  110. package/dist/MultiXYPlotRenderer/index.d.ts +1 -1
  111. package/dist/QuantitativeTrack/configSchema.d.ts +1 -1
  112. package/dist/QuantitativeTrack/configSchema.js +1 -7
  113. package/dist/QuantitativeTrack/index.d.ts +1 -1
  114. package/dist/QuantitativeTrack/index.js +1 -1
  115. package/dist/Tooltip.d.ts +2 -3
  116. package/dist/Tooltip.js +7 -34
  117. package/dist/WiggleBaseRenderer.d.ts +8 -11
  118. package/dist/WiggleBaseRenderer.js +0 -1
  119. package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
  120. package/dist/WiggleRPC/MultiWiggleGetSources.js +2 -29
  121. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
  122. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
  123. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
  124. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
  125. package/dist/WiggleRendering.d.ts +3 -4
  126. package/dist/WiggleRendering.js +5 -30
  127. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
  128. package/dist/XYPlotRenderer/XYPlotRenderer.js +37 -6
  129. package/dist/XYPlotRenderer/configSchema.d.ts +0 -12
  130. package/dist/XYPlotRenderer/configSchema.js +2 -20
  131. package/dist/XYPlotRenderer/index.d.ts +1 -1
  132. package/dist/configSchema.d.ts +0 -18
  133. package/dist/configSchema.js +1 -23
  134. package/dist/drawDensity.d.ts +3 -3
  135. package/dist/drawDensity.js +0 -4
  136. package/dist/drawLine.d.ts +3 -3
  137. package/dist/drawLine.js +0 -5
  138. package/dist/drawXY.d.ts +4 -3
  139. package/dist/drawXY.js +28 -12
  140. package/dist/getMultiWiggleSourcesAutorun.d.ts +2 -2
  141. package/dist/getMultiWiggleSourcesAutorun.js +10 -7
  142. package/dist/getQuantitativeStats.d.ts +3 -3
  143. package/dist/getQuantitativeStats.js +2 -10
  144. package/dist/getQuantitativeStatsAutorun.d.ts +3 -3
  145. package/dist/getQuantitativeStatsAutorun.js +18 -20
  146. package/dist/index.d.ts +7 -7
  147. package/dist/index.js +40 -58
  148. package/dist/shared/SetMinMaxDialog.d.ts +1 -2
  149. package/dist/shared/SetMinMaxDialog.js +12 -42
  150. package/dist/shared/SharedWiggleConfigSchema.d.ts +0 -26
  151. package/dist/shared/SharedWiggleConfigSchema.js +1 -30
  152. package/dist/shared/SharedWiggleMixin.d.ts +26 -231
  153. package/dist/shared/SharedWiggleMixin.js +24 -184
  154. package/dist/shared/YScaleBar.d.ts +1 -2
  155. package/dist/shared/YScaleBar.js +2 -5
  156. package/dist/util.d.ts +0 -28
  157. package/dist/util.js +1 -45
  158. package/esm/BigWigAdapter/BigWigAdapter.d.ts +4 -3
  159. package/esm/BigWigAdapter/BigWigAdapter.js +5 -10
  160. package/esm/BigWigAdapter/configSchema.d.ts +0 -9
  161. package/esm/BigWigAdapter/configSchema.js +1 -13
  162. package/esm/BigWigAdapter/index.d.ts +1 -1
  163. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
  164. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +14 -26
  165. package/esm/CreateMultiWiggleExtension/index.d.ts +1 -1
  166. package/esm/CreateMultiWiggleExtension/index.js +26 -26
  167. package/esm/DensityRenderer/DensityRenderer.d.ts +2 -1
  168. package/esm/DensityRenderer/DensityRenderer.js +1 -1
  169. package/esm/DensityRenderer/configSchema.js +1 -7
  170. package/esm/DensityRenderer/index.d.ts +1 -1
  171. package/esm/DensityRenderer/index.js +1 -1
  172. package/esm/GuessAdapter/index.d.ts +2 -0
  173. package/esm/GuessAdapter/index.js +22 -0
  174. package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
  175. package/esm/LinePlotRenderer/LinePlotRenderer.js +1 -1
  176. package/esm/LinePlotRenderer/configSchema.d.ts +0 -3
  177. package/esm/LinePlotRenderer/configSchema.js +1 -10
  178. package/esm/LinePlotRenderer/index.d.ts +1 -1
  179. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
  180. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +23 -36
  181. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
  182. package/esm/LinearWiggleDisplay/components/Tooltip.js +5 -18
  183. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  184. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +12 -15
  185. package/esm/LinearWiggleDisplay/configSchema.d.ts +1 -12
  186. package/esm/LinearWiggleDisplay/configSchema.js +0 -15
  187. package/esm/LinearWiggleDisplay/index.d.ts +1 -1
  188. package/esm/LinearWiggleDisplay/index.js +1 -1
  189. package/esm/LinearWiggleDisplay/model.d.ts +44 -79
  190. package/esm/LinearWiggleDisplay/model.js +24 -66
  191. package/esm/LinearWiggleDisplay/renderSvg.d.ts +3 -4
  192. package/esm/LinearWiggleDisplay/renderSvg.js +2 -6
  193. package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
  194. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +5 -4
  195. package/esm/MultiDensityRenderer/configSchema.js +1 -7
  196. package/esm/MultiDensityRenderer/index.d.ts +1 -1
  197. package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
  198. package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
  199. package/esm/MultiLineRenderer/configSchema.d.ts +0 -6
  200. package/esm/MultiLineRenderer/configSchema.js +1 -13
  201. package/esm/MultiLineRenderer/index.d.ts +1 -1
  202. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
  203. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
  204. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
  205. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +12 -0
  206. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
  207. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +10 -0
  208. package/esm/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
  209. package/esm/MultiLinearWiggleDisplay/components/LegendItem.js +14 -0
  210. package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
  211. package/esm/MultiLinearWiggleDisplay/components/RectBg.js +2 -2
  212. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
  213. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +3 -5
  214. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
  215. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +22 -38
  216. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
  217. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +64 -91
  218. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
  219. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
  220. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  221. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
  222. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
  223. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +8 -28
  224. package/esm/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
  225. package/esm/MultiLinearWiggleDisplay/components/util.js +1 -1
  226. package/esm/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
  227. package/esm/MultiLinearWiggleDisplay/configSchema.js +1 -19
  228. package/esm/MultiLinearWiggleDisplay/index.d.ts +1 -1
  229. package/esm/MultiLinearWiggleDisplay/index.js +1 -1
  230. package/esm/MultiLinearWiggleDisplay/model.d.ts +27 -146
  231. package/esm/MultiLinearWiggleDisplay/model.js +27 -121
  232. package/esm/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
  233. package/esm/MultiLinearWiggleDisplay/renderSvg.js +2 -5
  234. package/esm/MultiLinearWiggleDisplay/util.d.ts +1 -0
  235. package/esm/MultiLinearWiggleDisplay/util.js +7 -0
  236. package/esm/MultiQuantitativeTrack/configSchema.d.ts +1 -1
  237. package/esm/MultiQuantitativeTrack/configSchema.js +1 -7
  238. package/esm/MultiQuantitativeTrack/index.d.ts +1 -1
  239. package/esm/MultiQuantitativeTrack/index.js +1 -1
  240. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
  241. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
  242. package/esm/MultiRowLineRenderer/configSchema.d.ts +0 -6
  243. package/esm/MultiRowLineRenderer/configSchema.js +2 -14
  244. package/esm/MultiRowLineRenderer/index.d.ts +1 -1
  245. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
  246. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
  247. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
  248. package/esm/MultiRowXYPlotRenderer/configSchema.js +2 -20
  249. package/esm/MultiRowXYPlotRenderer/index.d.ts +1 -1
  250. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
  251. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +9 -14
  252. package/esm/MultiWiggleAdapter/configSchema.d.ts +0 -6
  253. package/esm/MultiWiggleAdapter/configSchema.js +1 -10
  254. package/esm/MultiWiggleAdapter/index.d.ts +1 -1
  255. package/esm/MultiWiggleAdapter/index.js +1 -1
  256. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
  257. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -80
  258. package/esm/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
  259. package/esm/MultiWiggleAddTrackWorkflow/index.js +1 -2
  260. package/esm/MultiWiggleRendering.d.ts +4 -5
  261. package/esm/MultiWiggleRendering.js +6 -6
  262. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
  263. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -3
  264. package/esm/MultiXYPlotRenderer/configSchema.d.ts +0 -12
  265. package/esm/MultiXYPlotRenderer/configSchema.js +1 -19
  266. package/esm/MultiXYPlotRenderer/index.d.ts +1 -1
  267. package/esm/QuantitativeTrack/configSchema.d.ts +1 -1
  268. package/esm/QuantitativeTrack/configSchema.js +1 -7
  269. package/esm/QuantitativeTrack/index.d.ts +1 -1
  270. package/esm/QuantitativeTrack/index.js +1 -1
  271. package/esm/Tooltip.d.ts +2 -3
  272. package/esm/Tooltip.js +7 -11
  273. package/esm/WiggleBaseRenderer.d.ts +8 -11
  274. package/esm/WiggleBaseRenderer.js +0 -1
  275. package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
  276. package/esm/WiggleRPC/MultiWiggleGetSources.js +2 -29
  277. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
  278. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
  279. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
  280. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
  281. package/esm/WiggleRendering.d.ts +3 -4
  282. package/esm/WiggleRendering.js +5 -7
  283. package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
  284. package/esm/XYPlotRenderer/XYPlotRenderer.js +3 -5
  285. package/esm/XYPlotRenderer/configSchema.d.ts +0 -12
  286. package/esm/XYPlotRenderer/configSchema.js +2 -20
  287. package/esm/XYPlotRenderer/index.d.ts +1 -1
  288. package/esm/configSchema.d.ts +0 -18
  289. package/esm/configSchema.js +1 -23
  290. package/esm/drawDensity.d.ts +3 -3
  291. package/esm/drawDensity.js +1 -5
  292. package/esm/drawLine.d.ts +3 -3
  293. package/esm/drawLine.js +1 -6
  294. package/esm/drawXY.d.ts +4 -3
  295. package/esm/drawXY.js +29 -13
  296. package/esm/getMultiWiggleSourcesAutorun.d.ts +2 -2
  297. package/esm/getMultiWiggleSourcesAutorun.js +9 -6
  298. package/esm/getQuantitativeStats.d.ts +3 -3
  299. package/esm/getQuantitativeStats.js +3 -11
  300. package/esm/getQuantitativeStatsAutorun.d.ts +3 -3
  301. package/esm/getQuantitativeStatsAutorun.js +18 -20
  302. package/esm/index.d.ts +7 -7
  303. package/esm/index.js +14 -42
  304. package/esm/shared/SetMinMaxDialog.d.ts +1 -2
  305. package/esm/shared/SetMinMaxDialog.js +12 -19
  306. package/esm/shared/SharedWiggleConfigSchema.d.ts +0 -26
  307. package/esm/shared/SharedWiggleConfigSchema.js +1 -30
  308. package/esm/shared/SharedWiggleMixin.d.ts +26 -231
  309. package/esm/shared/SharedWiggleMixin.js +8 -178
  310. package/esm/shared/YScaleBar.d.ts +1 -2
  311. package/esm/shared/YScaleBar.js +2 -2
  312. package/esm/util.d.ts +0 -28
  313. package/esm/util.js +1 -45
  314. package/package.json +3 -6
  315. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
  316. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -66
  317. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
  318. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -38
@@ -4,48 +4,30 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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  const configuration_1 = require("@jbrowse/core/configuration");
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- const configSchema_1 = __importDefault(require("../configSchema"));
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  const mobx_state_tree_1 = require("mobx-state-tree");
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- /**
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- * #config XYPlotRenderer
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- */
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- function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
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+ const configSchema_1 = __importDefault(require("../configSchema"));
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+ function x() { }
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  const configSchema = (0, configuration_1.ConfigurationSchema)('XYPlotRenderer', {
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- /**
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- * #slot
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- */
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  filled: {
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  type: 'boolean',
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13
  defaultValue: true,
20
14
  },
21
- /**
22
- * #slot
23
- */
24
15
  displayCrossHatches: {
25
16
  type: 'boolean',
26
17
  description: 'choose to draw cross hatches (sideways lines)',
27
18
  defaultValue: false,
28
19
  },
29
- /**
30
- * #slot
31
- */
32
20
  summaryScoreMode: {
33
21
  type: 'stringEnum',
34
22
  model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
35
23
  description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
36
24
  defaultValue: 'whiskers',
37
25
  },
38
- /**
39
- * #slot
40
- */
41
26
  minSize: {
42
27
  type: 'number',
43
28
  defaultValue: 0.7,
44
29
  },
45
30
  }, {
46
- /**
47
- * #baseConfiguration
48
- */
49
31
  baseConfiguration: configSchema_1.default,
50
32
  explicitlyTyped: true,
51
33
  });
@@ -1,4 +1,4 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
1
+ import type PluginManager from '@jbrowse/core/PluginManager';
2
2
  export default function XYPlotRendererF(pluginManager: PluginManager): void;
3
3
  export { default as XYPlotRenderer } from './XYPlotRenderer';
4
4
  export { default as ReactComponent } from '../WiggleRendering';
@@ -1,48 +1,30 @@
1
1
  declare const WiggleRenderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
- /**
3
- * #slot
4
- */
5
2
  color: {
6
3
  type: string;
7
4
  description: string;
8
5
  defaultValue: string;
9
6
  };
10
- /**
11
- * #slot
12
- */
13
7
  posColor: {
14
8
  type: string;
15
9
  description: string;
16
10
  defaultValue: string;
17
11
  };
18
- /**
19
- * #slot
20
- */
21
12
  negColor: {
22
13
  type: string;
23
14
  description: string;
24
15
  defaultValue: string;
25
16
  };
26
- /**
27
- * #slot
28
- */
29
17
  clipColor: {
30
18
  type: string;
31
19
  description: string;
32
20
  defaultValue: string;
33
21
  };
34
- /**
35
- * #slot
36
- */
37
22
  bicolorPivot: {
38
23
  type: string;
39
24
  model: import("mobx-state-tree").ISimpleType<string>;
40
25
  description: string;
41
26
  defaultValue: string;
42
27
  };
43
- /**
44
- * #slot
45
- */
46
28
  bicolorPivotValue: {
47
29
  type: string;
48
30
  defaultValue: number;
@@ -2,47 +2,28 @@
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  const configuration_1 = require("@jbrowse/core/configuration");
4
4
  const mobx_state_tree_1 = require("mobx-state-tree");
5
- /**
6
- * #config WiggleRenderer
7
- * this is the "base wiggle renderer config schema"
8
- */
9
- function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
5
+ function x() { }
10
6
  const WiggleRenderer = (0, configuration_1.ConfigurationSchema)('WiggleRenderer', {
11
- /**
12
- * #slot
13
- */
14
7
  color: {
15
8
  type: 'color',
16
9
  description: 'the color of track, overrides posColor and negColor',
17
10
  defaultValue: '#f0f',
18
11
  },
19
- /**
20
- * #slot
21
- */
22
12
  posColor: {
23
13
  type: 'color',
24
14
  description: 'the color to use when the score is positive',
25
15
  defaultValue: 'blue',
26
16
  },
27
- /**
28
- * #slot
29
- */
30
17
  negColor: {
31
18
  type: 'color',
32
19
  description: 'the color to use when the score is negative',
33
20
  defaultValue: 'red',
34
21
  },
35
- /**
36
- * #slot
37
- */
38
22
  clipColor: {
39
23
  type: 'color',
40
24
  description: 'the color of the clipping marker',
41
25
  defaultValue: 'red',
42
26
  },
43
- /**
44
- * #slot
45
- */
46
27
  bicolorPivot: {
47
28
  type: 'stringEnum',
48
29
  model: mobx_state_tree_1.types.enumeration('Scale type', [
@@ -54,9 +35,6 @@ const WiggleRenderer = (0, configuration_1.ConfigurationSchema)('WiggleRenderer'
54
35
  description: 'type of bicolor pivot',
55
36
  defaultValue: 'numeric',
56
37
  },
57
- /**
58
- * #slot
59
- */
60
38
  bicolorPivotValue: {
61
39
  type: 'number',
62
40
  defaultValue: 0,
@@ -1,6 +1,6 @@
1
- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
2
- import { Feature, Region } from '@jbrowse/core/util';
3
- import { ScaleOpts } from './util';
1
+ import type { ScaleOpts } from './util';
2
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
3
+ import type { Feature, Region } from '@jbrowse/core/util';
4
4
  export declare function drawDensity(ctx: CanvasRenderingContext2D, props: {
5
5
  features: Map<string, Feature> | Feature[];
6
6
  regions: Region[];
@@ -3,7 +3,6 @@ Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.drawDensity = drawDensity;
4
4
  const configuration_1 = require("@jbrowse/core/configuration");
5
5
  const util_1 = require("@jbrowse/core/util");
6
- // locals
7
6
  const util_2 = require("./util");
8
7
  const fudgeFactor = 0.3;
9
8
  const clipHeight = 2;
@@ -34,7 +33,6 @@ function drawDensity(ctx, props) {
34
33
  const reducedFeatures = [];
35
34
  for (const feature of features.values()) {
36
35
  const [leftPx, rightPx] = (0, util_1.featureSpanPx)(feature, region, bpPerPx);
37
- // create reduced features, avoiding multiple features per px
38
36
  if (Math.floor(leftPx) !== Math.floor(prevLeftPx)) {
39
37
  reducedFeatures.push(feature);
40
38
  prevLeftPx = leftPx;
@@ -45,8 +43,6 @@ function drawDensity(ctx, props) {
45
43
  ctx.fillStyle = cb(feature, score);
46
44
  ctx.fillRect(leftPx, 0, w, height);
47
45
  }
48
- // second pass: draw clipping
49
- // avoid persisting the red fillstyle with save/restore
50
46
  ctx.save();
51
47
  if (hasClipping) {
52
48
  ctx.fillStyle = clipColor;
@@ -1,6 +1,6 @@
1
- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
2
- import { Feature, Region } from '@jbrowse/core/util';
3
- import { ScaleOpts } from './util';
1
+ import type { ScaleOpts } from './util';
2
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
3
+ import type { Feature, Region } from '@jbrowse/core/util';
4
4
  export declare function drawLine(ctx: CanvasRenderingContext2D, props: {
5
5
  features: Map<string, Feature> | Feature[];
6
6
  regions: Region[];
package/dist/drawLine.js CHANGED
@@ -3,7 +3,6 @@ Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.drawLine = drawLine;
4
4
  const configuration_1 = require("@jbrowse/core/configuration");
5
5
  const util_1 = require("@jbrowse/core/util");
6
- // locals
7
6
  const util_2 = require("./util");
8
7
  const fudgeFactor = 0.3;
9
8
  const clipHeight = 2;
@@ -11,9 +10,6 @@ function drawLine(ctx, props) {
11
10
  const { features, regions, bpPerPx, scaleOpts, height: unadjustedHeight, ticks: { values }, displayCrossHatches, colorCallback, config, offset = 0, } = props;
12
11
  const region = regions[0];
13
12
  const width = (region.end - region.start) / bpPerPx;
14
- // the adjusted height takes into account YSCALEBAR_LABEL_OFFSET from the
15
- // wiggle display, and makes the height of the actual drawn area add
16
- // "padding" to the top and bottom of the display
17
13
  const height = unadjustedHeight - offset * 2;
18
14
  const clipColor = (0, configuration_1.readConfObject)(config, 'clipColor');
19
15
  const scale = (0, util_2.getScale)({ ...scaleOpts, range: [0, height] });
@@ -26,7 +22,6 @@ function drawLine(ctx, props) {
26
22
  const reducedFeatures = [];
27
23
  for (const feature of features.values()) {
28
24
  const [leftPx, rightPx] = (0, util_1.featureSpanPx)(feature, region, bpPerPx);
29
- // create reduced features, avoiding multiple features per px
30
25
  if (Math.floor(leftPx) !== Math.floor(prevLeftPx)) {
31
26
  reducedFeatures.push(feature);
32
27
  prevLeftPx = leftPx;
package/dist/drawXY.d.ts CHANGED
@@ -1,7 +1,8 @@
1
- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
2
- import { Feature, Region } from '@jbrowse/core/util';
3
- import { ScaleOpts } from './util';
1
+ import type { ScaleOpts } from './util';
2
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
3
+ import type { Feature, Region } from '@jbrowse/core/util';
4
4
  export declare function drawXY(ctx: CanvasRenderingContext2D, props: {
5
+ stopToken?: string;
5
6
  features: Map<string, Feature> | Feature[];
6
7
  bpPerPx: number;
7
8
  regions: Region[];
package/dist/drawXY.js CHANGED
@@ -2,9 +2,9 @@
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.drawXY = drawXY;
4
4
  const configuration_1 = require("@jbrowse/core/configuration");
5
- const colord_1 = require("@jbrowse/core/util/colord");
6
5
  const util_1 = require("@jbrowse/core/util");
7
- // locals
6
+ const colord_1 = require("@jbrowse/core/util/colord");
7
+ const stopToken_1 = require("@jbrowse/core/util/stopToken");
8
8
  const util_2 = require("./util");
9
9
  function lighten(color, amount) {
10
10
  const hslColor = color.toHsl();
@@ -22,9 +22,6 @@ function drawXY(ctx, props) {
22
22
  const { features, bpPerPx, regions, scaleOpts, height: unadjustedHeight, config, ticks, displayCrossHatches, offset = 0, colorCallback, } = props;
23
23
  const region = regions[0];
24
24
  const width = (region.end - region.start) / bpPerPx;
25
- // the adjusted height takes into account YSCALEBAR_LABEL_OFFSET from the
26
- // wiggle display, and makes the height of the actual drawn area add
27
- // "padding" to the top and bottom of the display
28
25
  const height = unadjustedHeight - offset * 2;
29
26
  const filled = (0, configuration_1.readConfObject)(config, 'filled');
30
27
  const clipColor = (0, configuration_1.readConfObject)(config, 'clipColor');
@@ -43,13 +40,16 @@ function drawXY(ctx, props) {
43
40
  let prevLeftPx = Number.NEGATIVE_INFINITY;
44
41
  const reducedFeatures = [];
45
42
  const crossingOrigin = niceMin < pivotValue && niceMax > pivotValue;
46
- // we handle whiskers separately to render max row, min row, and avg in three
47
- // passes. this reduces subpixel rendering issues. note: for stylistic
48
- // reasons, clipping indicator is only drawn for score, not min/max score
43
+ let start = performance.now();
49
44
  if (summaryScoreMode === 'whiskers') {
50
45
  let lastCol;
51
46
  let lastMix;
47
+ start = performance.now();
52
48
  for (const feature of features.values()) {
49
+ if (performance.now() - start > 400) {
50
+ (0, stopToken_1.checkStopToken)();
51
+ start = performance.now();
52
+ }
53
53
  const [leftPx, rightPx] = (0, util_1.featureSpanPx)(feature, region, bpPerPx);
54
54
  if (feature.get('summary')) {
55
55
  const w = Math.max(rightPx - leftPx + fudgeFactor, minSize);
@@ -66,7 +66,12 @@ function drawXY(ctx, props) {
66
66
  }
67
67
  lastMix = undefined;
68
68
  lastCol = undefined;
69
+ start = performance.now();
69
70
  for (const feature of features.values()) {
71
+ if (performance.now() - start > 400) {
72
+ (0, stopToken_1.checkStopToken)();
73
+ start = performance.now();
74
+ }
70
75
  const [leftPx, rightPx] = (0, util_1.featureSpanPx)(feature, region, bpPerPx);
71
76
  const score = feature.get('score');
72
77
  const max = feature.get('maxScore');
@@ -81,7 +86,6 @@ function drawXY(ctx, props) {
81
86
  .toString())
82
87
  : c;
83
88
  const w = Math.max(rightPx - leftPx + fudgeFactor, minSize);
84
- // create reduced features, avoiding multiple features per px
85
89
  if (Math.floor(leftPx) !== Math.floor(prevLeftPx)) {
86
90
  reducedFeatures.push(feature);
87
91
  prevLeftPx = leftPx;
@@ -92,7 +96,12 @@ function drawXY(ctx, props) {
92
96
  }
93
97
  lastMix = undefined;
94
98
  lastCol = undefined;
99
+ start = performance.now();
95
100
  for (const feature of features.values()) {
101
+ if (performance.now() - start > 400) {
102
+ (0, stopToken_1.checkStopToken)();
103
+ start = performance.now();
104
+ }
96
105
  const [leftPx, rightPx] = (0, util_1.featureSpanPx)(feature, region, bpPerPx);
97
106
  if (feature.get('summary')) {
98
107
  const min = feature.get('minScore');
@@ -109,9 +118,13 @@ function drawXY(ctx, props) {
109
118
  }
110
119
  }
111
120
  else {
121
+ start = performance.now();
112
122
  for (const feature of features.values()) {
123
+ if (performance.now() - start > 400) {
124
+ (0, stopToken_1.checkStopToken)();
125
+ start = performance.now();
126
+ }
113
127
  const [leftPx, rightPx] = (0, util_1.featureSpanPx)(feature, region, bpPerPx);
114
- // create reduced features, avoiding multiple features per px
115
128
  if (Math.floor(leftPx) !== Math.floor(prevLeftPx)) {
116
129
  reducedFeatures.push(feature);
117
130
  prevLeftPx = leftPx;
@@ -133,12 +146,15 @@ function drawXY(ctx, props) {
133
146
  }
134
147
  }
135
148
  }
136
- // second pass: draw clipping
137
- // avoid persisting the red fillstyle with save/restore
138
149
  ctx.save();
139
150
  if (hasClipping) {
140
151
  ctx.fillStyle = clipColor;
152
+ start = performance.now();
141
153
  for (const feature of features.values()) {
154
+ if (performance.now() - start > 400) {
155
+ (0, stopToken_1.checkStopToken)();
156
+ start = performance.now();
157
+ }
142
158
  const [leftPx, rightPx] = (0, util_1.featureSpanPx)(feature, region, bpPerPx);
143
159
  const w = rightPx - leftPx + fudgeFactor;
144
160
  const score = feature.get('score');
@@ -1,4 +1,4 @@
1
- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
1
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
2
2
  export interface Source {
3
3
  name: string;
4
4
  color?: string;
@@ -10,7 +10,7 @@ export declare function getMultiWiggleSourcesAutorun(self: {
10
10
  adapterConfig: AnyConfigurationModel;
11
11
  autoscaleType: string;
12
12
  adapterProps: () => Record<string, unknown>;
13
- setStatsLoading: (aborter: AbortController) => void;
13
+ setSourcesLoading: (aborter: string) => void;
14
14
  setError: (error: unknown) => void;
15
15
  setMessage: (str: string) => void;
16
16
  setSources: (sources: Source[]) => void;
@@ -1,21 +1,24 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.getMultiWiggleSourcesAutorun = getMultiWiggleSourcesAutorun;
4
- const mobx_1 = require("mobx");
5
- const mobx_state_tree_1 = require("mobx-state-tree");
6
- // jbrowse
7
4
  const util_1 = require("@jbrowse/core/util");
5
+ const aborting_1 = require("@jbrowse/core/util/aborting");
6
+ const stopToken_1 = require("@jbrowse/core/util/stopToken");
8
7
  const tracks_1 = require("@jbrowse/core/util/tracks");
8
+ const mobx_1 = require("mobx");
9
+ const mobx_state_tree_1 = require("mobx-state-tree");
9
10
  function getMultiWiggleSourcesAutorun(self) {
10
11
  (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(async () => {
11
12
  try {
12
- const { rpcManager } = (0, util_1.getSession)(self);
13
- const { adapterConfig } = self;
14
- const sessionId = (0, tracks_1.getRpcSessionId)(self);
15
13
  const view = (0, util_1.getContainingView)(self);
16
14
  if (!view.initialized) {
17
15
  return;
18
16
  }
17
+ const { rpcManager } = (0, util_1.getSession)(self);
18
+ const { adapterConfig } = self;
19
+ const token = (0, stopToken_1.createStopToken)();
20
+ self.setSourcesLoading(token);
21
+ const sessionId = (0, tracks_1.getRpcSessionId)(self);
19
22
  const sources = (await rpcManager.call(sessionId, 'MultiWiggleGetSources', {
20
23
  regions: view.staticBlocks.contentBlocks,
21
24
  sessionId,
@@ -26,7 +29,7 @@ function getMultiWiggleSourcesAutorun(self) {
26
29
  }
27
30
  }
28
31
  catch (e) {
29
- if (!(0, util_1.isAbortException)(e) && (0, mobx_state_tree_1.isAlive)(self)) {
32
+ if (!(0, aborting_1.isAbortException)(e) && (0, mobx_state_tree_1.isAlive)(self)) {
30
33
  console.error(e);
31
34
  (0, util_1.getSession)(self).notifyError(`${e}`, e);
32
35
  }
@@ -1,5 +1,5 @@
1
- import { QuantitativeStats } from '@jbrowse/core/util/stats';
2
- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
1
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
2
+ import type { QuantitativeStats } from '@jbrowse/core/util/stats';
3
3
  export declare function getQuantitativeStats(self: {
4
4
  adapterConfig: AnyConfigurationModel;
5
5
  configuration: AnyConfigurationModel;
@@ -7,7 +7,7 @@ export declare function getQuantitativeStats(self: {
7
7
  setMessage: (str: string) => void;
8
8
  }, opts: {
9
9
  headers?: Record<string, string>;
10
- signal?: AbortSignal;
10
+ stopToken?: string;
11
11
  filters: string[];
12
12
  currStatsBpPerPx: number;
13
13
  }): Promise<QuantitativeStats>;
@@ -1,11 +1,10 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.getQuantitativeStats = getQuantitativeStats;
4
- const mobx_state_tree_1 = require("mobx-state-tree");
5
- // jbrowse
4
+ const configuration_1 = require("@jbrowse/core/configuration");
6
5
  const util_1 = require("@jbrowse/core/util");
7
6
  const tracks_1 = require("@jbrowse/core/util/tracks");
8
- const configuration_1 = require("@jbrowse/core/configuration");
7
+ const mobx_state_tree_1 = require("mobx-state-tree");
9
8
  async function getQuantitativeStats(self, opts) {
10
9
  const { rpcManager } = (0, util_1.getSession)(self);
11
10
  const numStdDev = (0, configuration_1.getConf)(self, 'numStdDev') || 3;
@@ -25,10 +24,6 @@ async function getQuantitativeStats(self, opts) {
25
24
  if (autoscaleType === 'global' || autoscaleType === 'globalsd') {
26
25
  const results = (await rpcManager.call(sessionId, 'WiggleGetGlobalQuantitativeStats', params));
27
26
  const { scoreMin, scoreMean, scoreStdDev } = results;
28
- // globalsd uses heuristic to avoid unnecessary scoreMin<0
29
- //
30
- // if the scoreMin is never less than 0 helps with most coverage bigwigs
31
- // just being >0
32
27
  return autoscaleType === 'globalsd'
33
28
  ? {
34
29
  ...results,
@@ -56,9 +51,6 @@ async function getQuantitativeStats(self, opts) {
56
51
  bpPerPx,
57
52
  }));
58
53
  const { scoreMin, scoreMean, scoreStdDev } = results;
59
- // localsd uses heuristic to avoid unnecessary scoreMin<0 if the
60
- // scoreMin is never less than 0 helps with most coverage bigwigs
61
- // just being >0
62
54
  return autoscaleType === 'localsd'
63
55
  ? {
64
56
  ...results,
@@ -1,12 +1,12 @@
1
- import { QuantitativeStats } from '@jbrowse/core/util/stats';
2
- import { AnyConfigurationModel } from '@jbrowse/core/configuration';
1
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
2
+ import type { QuantitativeStats } from '@jbrowse/core/util/stats';
3
3
  export declare function getQuantitativeStatsAutorun(self: {
4
4
  quantitativeStatsReady: boolean;
5
5
  configuration: AnyConfigurationModel;
6
6
  adapterConfig: AnyConfigurationModel;
7
7
  autoscaleType: string;
8
8
  adapterProps: () => Record<string, unknown>;
9
- setStatsLoading: (aborter: AbortController) => void;
9
+ setStatsLoading: (token: string) => void;
10
10
  setError: (error: unknown) => void;
11
11
  setMessage: (str: string) => void;
12
12
  updateQuantitativeStats: (stats: QuantitativeStats, region: string) => void;
@@ -1,35 +1,33 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.getQuantitativeStatsAutorun = getQuantitativeStatsAutorun;
4
+ const util_1 = require("@jbrowse/core/util");
5
+ const stopToken_1 = require("@jbrowse/core/util/stopToken");
4
6
  const mobx_1 = require("mobx");
5
7
  const mobx_state_tree_1 = require("mobx-state-tree");
6
- // jbrowse
7
- const util_1 = require("@jbrowse/core/util");
8
- // locals
9
8
  const getQuantitativeStats_1 = require("./getQuantitativeStats");
10
9
  function getQuantitativeStatsAutorun(self) {
11
10
  (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(async () => {
12
11
  try {
13
- const view = (0, util_1.getContainingView)(self);
14
- const aborter = new AbortController();
15
- self.setStatsLoading(aborter);
16
- if (!self.quantitativeStatsReady) {
17
- return;
18
- }
19
- const statsRegion = JSON.stringify(view.dynamicBlocks);
20
- const wiggleStats = await (0, getQuantitativeStats_1.getQuantitativeStats)(self, {
21
- signal: aborter.signal,
22
- filters: [],
23
- currStatsBpPerPx: view.bpPerPx,
24
- ...self.adapterProps(),
25
- });
26
- if ((0, mobx_state_tree_1.isAlive)(self)) {
27
- self.updateQuantitativeStats(wiggleStats, statsRegion);
12
+ if (self.quantitativeStatsReady) {
13
+ const view = (0, util_1.getContainingView)(self);
14
+ const stopToken = (0, stopToken_1.createStopToken)();
15
+ self.setStatsLoading(stopToken);
16
+ const statsRegion = JSON.stringify(view.dynamicBlocks);
17
+ const wiggleStats = await (0, getQuantitativeStats_1.getQuantitativeStats)(self, {
18
+ stopToken,
19
+ filters: [],
20
+ currStatsBpPerPx: view.bpPerPx,
21
+ ...self.adapterProps(),
22
+ });
23
+ if ((0, mobx_state_tree_1.isAlive)(self)) {
24
+ self.updateQuantitativeStats(wiggleStats, statsRegion);
25
+ }
28
26
  }
29
27
  }
30
28
  catch (e) {
31
- console.error(e);
32
- if (!(0, util_1.isAbortException)(e) && (0, mobx_state_tree_1.isAlive)(self)) {
29
+ if ((0, mobx_state_tree_1.isAlive)(self) && !(0, util_1.isAbortException)(e)) {
30
+ console.error(e);
33
31
  self.setError(e);
34
32
  }
35
33
  }
package/dist/index.d.ts CHANGED
@@ -1,18 +1,18 @@
1
1
  import Plugin from '@jbrowse/core/Plugin';
2
- import PluginManager from '@jbrowse/core/PluginManager';
3
- import WiggleBaseRenderer from './WiggleBaseRenderer';
4
- import * as utils from './util';
5
2
  import { modelFactory as linearWiggleDisplayModelFactory } from './LinearWiggleDisplay';
3
+ import WiggleBaseRenderer from './WiggleBaseRenderer';
6
4
  import { XYPlotRenderer } from './XYPlotRenderer';
5
+ import * as utils from './util';
6
+ import type PluginManager from '@jbrowse/core/PluginManager';
7
7
  export default class WigglePlugin extends Plugin {
8
8
  name: string;
9
9
  install(pm: PluginManager): void;
10
10
  exports: {
11
11
  LinearWiggleDisplayReactComponent: (props: {
12
12
  model: import("./LinearWiggleDisplay/model").WiggleDisplayModel;
13
- }) => import("react").JSX.Element;
13
+ }) => import("react/jsx-runtime").JSX.Element;
14
14
  XYPlotRendererReactComponent: (props: {
15
- regions: import("@jbrowse/core/util/types").Region[];
15
+ regions: import("@jbrowse/core/util").Region[];
16
16
  features: Map<string, import("@jbrowse/core/util").Feature>;
17
17
  bpPerPx: number;
18
18
  width: number;
@@ -21,7 +21,7 @@ export default class WigglePlugin extends Plugin {
21
21
  onMouseLeave?: (event: React.MouseEvent) => void;
22
22
  onMouseMove?: (event: React.MouseEvent, arg?: string) => void;
23
23
  onFeatureClick?: (event: React.MouseEvent, arg?: string) => void;
24
- }) => import("react").JSX.Element;
24
+ }) => import("react/jsx-runtime").JSX.Element;
25
25
  XYPlotRenderer: typeof XYPlotRenderer;
26
26
  WiggleBaseRenderer: typeof WiggleBaseRenderer;
27
27
  linearWiggleDisplayModelFactory: typeof linearWiggleDisplayModelFactory;
@@ -83,6 +83,6 @@ export default class WigglePlugin extends Plugin {
83
83
  }
84
84
  export * from './util';
85
85
  export { default as WiggleRendering } from './WiggleRendering';
86
- export { Tooltip, ReactComponent as LinearWiggleDisplayReactComponent, modelFactory as linearWiggleDisplayModelFactory, } from './LinearWiggleDisplay';
86
+ export { ReactComponent as LinearWiggleDisplayReactComponent, Tooltip, modelFactory as linearWiggleDisplayModelFactory, } from './LinearWiggleDisplay';
87
87
  export type { TooltipContentsComponent } from './Tooltip';
88
88
  export { default as WiggleBaseRenderer } from './WiggleBaseRenderer';