@jbrowse/plugin-wiggle 2.17.0 → 3.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +4 -3
- package/dist/BigWigAdapter/BigWigAdapter.js +3 -8
- package/dist/BigWigAdapter/configSchema.d.ts +0 -9
- package/dist/BigWigAdapter/configSchema.js +1 -13
- package/dist/BigWigAdapter/index.d.ts +1 -1
- package/dist/BigWigAdapter/index.js +17 -7
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +14 -49
- package/dist/CreateMultiWiggleExtension/index.d.ts +1 -1
- package/dist/CreateMultiWiggleExtension/index.js +43 -33
- package/dist/DensityRenderer/DensityRenderer.d.ts +2 -1
- package/dist/DensityRenderer/DensityRenderer.js +35 -2
- package/dist/DensityRenderer/configSchema.js +1 -7
- package/dist/DensityRenderer/index.d.ts +1 -1
- package/dist/DensityRenderer/index.js +1 -1
- package/dist/GuessAdapter/index.d.ts +2 -0
- package/dist/GuessAdapter/index.js +25 -0
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
- package/dist/LinePlotRenderer/LinePlotRenderer.js +35 -2
- package/dist/LinePlotRenderer/configSchema.d.ts +0 -3
- package/dist/LinePlotRenderer/configSchema.js +1 -10
- package/dist/LinePlotRenderer/index.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +23 -59
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
- package/dist/LinearWiggleDisplay/components/Tooltip.js +5 -18
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +11 -14
- package/dist/LinearWiggleDisplay/configSchema.d.ts +1 -12
- package/dist/LinearWiggleDisplay/configSchema.js +0 -15
- package/dist/LinearWiggleDisplay/index.d.ts +1 -1
- package/dist/LinearWiggleDisplay/index.js +18 -8
- package/dist/LinearWiggleDisplay/model.d.ts +44 -79
- package/dist/LinearWiggleDisplay/model.js +39 -71
- package/dist/LinearWiggleDisplay/renderSvg.d.ts +3 -4
- package/dist/LinearWiggleDisplay/renderSvg.js +2 -6
- package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +40 -6
- package/dist/MultiDensityRenderer/configSchema.js +1 -7
- package/dist/MultiDensityRenderer/index.d.ts +1 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
- package/dist/MultiLineRenderer/MultiLineRenderer.js +35 -3
- package/dist/MultiLineRenderer/configSchema.d.ts +0 -6
- package/dist/MultiLineRenderer/configSchema.js +1 -13
- package/dist/MultiLineRenderer/index.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
- package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
- package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +17 -0
- package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
- package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +15 -0
- package/dist/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
- package/dist/MultiLinearWiggleDisplay/components/LegendItem.js +19 -0
- package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
- package/dist/MultiLinearWiggleDisplay/components/RectBg.js +2 -5
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +2 -4
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +21 -60
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +80 -97
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +7 -27
- package/dist/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/util.js +1 -1
- package/dist/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
- package/dist/MultiLinearWiggleDisplay/configSchema.js +1 -19
- package/dist/MultiLinearWiggleDisplay/index.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/index.js +18 -8
- package/dist/MultiLinearWiggleDisplay/model.d.ts +27 -146
- package/dist/MultiLinearWiggleDisplay/model.js +44 -128
- package/dist/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
- package/dist/MultiLinearWiggleDisplay/renderSvg.js +2 -5
- package/dist/MultiLinearWiggleDisplay/util.d.ts +1 -0
- package/dist/MultiLinearWiggleDisplay/util.js +10 -0
- package/dist/MultiQuantitativeTrack/configSchema.d.ts +1 -1
- package/dist/MultiQuantitativeTrack/configSchema.js +1 -7
- package/dist/MultiQuantitativeTrack/index.d.ts +1 -1
- package/dist/MultiQuantitativeTrack/index.js +1 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +35 -3
- package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -6
- package/dist/MultiRowLineRenderer/configSchema.js +2 -14
- package/dist/MultiRowLineRenderer/index.d.ts +1 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +35 -3
- package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/MultiRowXYPlotRenderer/configSchema.js +2 -20
- package/dist/MultiRowXYPlotRenderer/index.d.ts +1 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +8 -13
- package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -6
- package/dist/MultiWiggleAdapter/configSchema.js +1 -10
- package/dist/MultiWiggleAdapter/index.d.ts +1 -1
- package/dist/MultiWiggleAdapter/index.js +18 -8
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -104
- package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
- package/dist/MultiWiggleAddTrackWorkflow/index.js +18 -9
- package/dist/MultiWiggleRendering.d.ts +4 -5
- package/dist/MultiWiggleRendering.js +6 -29
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +36 -4
- package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/MultiXYPlotRenderer/configSchema.js +1 -19
- package/dist/MultiXYPlotRenderer/index.d.ts +1 -1
- package/dist/QuantitativeTrack/configSchema.d.ts +1 -1
- package/dist/QuantitativeTrack/configSchema.js +1 -7
- package/dist/QuantitativeTrack/index.d.ts +1 -1
- package/dist/QuantitativeTrack/index.js +1 -1
- package/dist/Tooltip.d.ts +2 -3
- package/dist/Tooltip.js +7 -34
- package/dist/WiggleBaseRenderer.d.ts +8 -11
- package/dist/WiggleBaseRenderer.js +0 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
- package/dist/WiggleRPC/MultiWiggleGetSources.js +2 -29
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
- package/dist/WiggleRendering.d.ts +3 -4
- package/dist/WiggleRendering.js +5 -30
- package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
- package/dist/XYPlotRenderer/XYPlotRenderer.js +37 -6
- package/dist/XYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/XYPlotRenderer/configSchema.js +2 -20
- package/dist/XYPlotRenderer/index.d.ts +1 -1
- package/dist/configSchema.d.ts +0 -18
- package/dist/configSchema.js +1 -23
- package/dist/drawDensity.d.ts +3 -3
- package/dist/drawDensity.js +0 -4
- package/dist/drawLine.d.ts +3 -3
- package/dist/drawLine.js +0 -5
- package/dist/drawXY.d.ts +4 -3
- package/dist/drawXY.js +28 -12
- package/dist/getMultiWiggleSourcesAutorun.d.ts +2 -2
- package/dist/getMultiWiggleSourcesAutorun.js +10 -7
- package/dist/getQuantitativeStats.d.ts +3 -3
- package/dist/getQuantitativeStats.js +2 -10
- package/dist/getQuantitativeStatsAutorun.d.ts +3 -3
- package/dist/getQuantitativeStatsAutorun.js +18 -20
- package/dist/index.d.ts +7 -7
- package/dist/index.js +40 -58
- package/dist/shared/SetMinMaxDialog.d.ts +1 -2
- package/dist/shared/SetMinMaxDialog.js +12 -42
- package/dist/shared/SharedWiggleConfigSchema.d.ts +0 -26
- package/dist/shared/SharedWiggleConfigSchema.js +1 -30
- package/dist/shared/SharedWiggleMixin.d.ts +26 -231
- package/dist/shared/SharedWiggleMixin.js +24 -184
- package/dist/shared/YScaleBar.d.ts +1 -2
- package/dist/shared/YScaleBar.js +2 -5
- package/dist/util.d.ts +0 -28
- package/dist/util.js +1 -45
- package/esm/BigWigAdapter/BigWigAdapter.d.ts +4 -3
- package/esm/BigWigAdapter/BigWigAdapter.js +5 -10
- package/esm/BigWigAdapter/configSchema.d.ts +0 -9
- package/esm/BigWigAdapter/configSchema.js +1 -13
- package/esm/BigWigAdapter/index.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +14 -26
- package/esm/CreateMultiWiggleExtension/index.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/index.js +26 -26
- package/esm/DensityRenderer/DensityRenderer.d.ts +2 -1
- package/esm/DensityRenderer/DensityRenderer.js +1 -1
- package/esm/DensityRenderer/configSchema.js +1 -7
- package/esm/DensityRenderer/index.d.ts +1 -1
- package/esm/DensityRenderer/index.js +1 -1
- package/esm/GuessAdapter/index.d.ts +2 -0
- package/esm/GuessAdapter/index.js +22 -0
- package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
- package/esm/LinePlotRenderer/LinePlotRenderer.js +1 -1
- package/esm/LinePlotRenderer/configSchema.d.ts +0 -3
- package/esm/LinePlotRenderer/configSchema.js +1 -10
- package/esm/LinePlotRenderer/index.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js +23 -36
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
- package/esm/LinearWiggleDisplay/components/Tooltip.js +5 -18
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +12 -15
- package/esm/LinearWiggleDisplay/configSchema.d.ts +1 -12
- package/esm/LinearWiggleDisplay/configSchema.js +0 -15
- package/esm/LinearWiggleDisplay/index.d.ts +1 -1
- package/esm/LinearWiggleDisplay/index.js +1 -1
- package/esm/LinearWiggleDisplay/model.d.ts +44 -79
- package/esm/LinearWiggleDisplay/model.js +24 -66
- package/esm/LinearWiggleDisplay/renderSvg.d.ts +3 -4
- package/esm/LinearWiggleDisplay/renderSvg.js +2 -6
- package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +5 -4
- package/esm/MultiDensityRenderer/configSchema.js +1 -7
- package/esm/MultiDensityRenderer/index.d.ts +1 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
- package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
- package/esm/MultiLineRenderer/configSchema.d.ts +0 -6
- package/esm/MultiLineRenderer/configSchema.js +1 -13
- package/esm/MultiLineRenderer/index.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
- package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
- package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +12 -0
- package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
- package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +10 -0
- package/esm/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
- package/esm/MultiLinearWiggleDisplay/components/LegendItem.js +14 -0
- package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
- package/esm/MultiLinearWiggleDisplay/components/RectBg.js +2 -2
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +3 -5
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +22 -38
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +64 -91
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +8 -28
- package/esm/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/util.js +1 -1
- package/esm/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
- package/esm/MultiLinearWiggleDisplay/configSchema.js +1 -19
- package/esm/MultiLinearWiggleDisplay/index.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/index.js +1 -1
- package/esm/MultiLinearWiggleDisplay/model.d.ts +27 -146
- package/esm/MultiLinearWiggleDisplay/model.js +27 -121
- package/esm/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
- package/esm/MultiLinearWiggleDisplay/renderSvg.js +2 -5
- package/esm/MultiLinearWiggleDisplay/util.d.ts +1 -0
- package/esm/MultiLinearWiggleDisplay/util.js +7 -0
- package/esm/MultiQuantitativeTrack/configSchema.d.ts +1 -1
- package/esm/MultiQuantitativeTrack/configSchema.js +1 -7
- package/esm/MultiQuantitativeTrack/index.d.ts +1 -1
- package/esm/MultiQuantitativeTrack/index.js +1 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/esm/MultiRowLineRenderer/configSchema.d.ts +0 -6
- package/esm/MultiRowLineRenderer/configSchema.js +2 -14
- package/esm/MultiRowLineRenderer/index.d.ts +1 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/MultiRowXYPlotRenderer/configSchema.js +2 -20
- package/esm/MultiRowXYPlotRenderer/index.d.ts +1 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +9 -14
- package/esm/MultiWiggleAdapter/configSchema.d.ts +0 -6
- package/esm/MultiWiggleAdapter/configSchema.js +1 -10
- package/esm/MultiWiggleAdapter/index.d.ts +1 -1
- package/esm/MultiWiggleAdapter/index.js +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -80
- package/esm/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/index.js +1 -2
- package/esm/MultiWiggleRendering.d.ts +4 -5
- package/esm/MultiWiggleRendering.js +6 -6
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -3
- package/esm/MultiXYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/MultiXYPlotRenderer/configSchema.js +1 -19
- package/esm/MultiXYPlotRenderer/index.d.ts +1 -1
- package/esm/QuantitativeTrack/configSchema.d.ts +1 -1
- package/esm/QuantitativeTrack/configSchema.js +1 -7
- package/esm/QuantitativeTrack/index.d.ts +1 -1
- package/esm/QuantitativeTrack/index.js +1 -1
- package/esm/Tooltip.d.ts +2 -3
- package/esm/Tooltip.js +7 -11
- package/esm/WiggleBaseRenderer.d.ts +8 -11
- package/esm/WiggleBaseRenderer.js +0 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
- package/esm/WiggleRPC/MultiWiggleGetSources.js +2 -29
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
- package/esm/WiggleRendering.d.ts +3 -4
- package/esm/WiggleRendering.js +5 -7
- package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
- package/esm/XYPlotRenderer/XYPlotRenderer.js +3 -5
- package/esm/XYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/XYPlotRenderer/configSchema.js +2 -20
- package/esm/XYPlotRenderer/index.d.ts +1 -1
- package/esm/configSchema.d.ts +0 -18
- package/esm/configSchema.js +1 -23
- package/esm/drawDensity.d.ts +3 -3
- package/esm/drawDensity.js +1 -5
- package/esm/drawLine.d.ts +3 -3
- package/esm/drawLine.js +1 -6
- package/esm/drawXY.d.ts +4 -3
- package/esm/drawXY.js +29 -13
- package/esm/getMultiWiggleSourcesAutorun.d.ts +2 -2
- package/esm/getMultiWiggleSourcesAutorun.js +9 -6
- package/esm/getQuantitativeStats.d.ts +3 -3
- package/esm/getQuantitativeStats.js +3 -11
- package/esm/getQuantitativeStatsAutorun.d.ts +3 -3
- package/esm/getQuantitativeStatsAutorun.js +18 -20
- package/esm/index.d.ts +7 -7
- package/esm/index.js +14 -42
- package/esm/shared/SetMinMaxDialog.d.ts +1 -2
- package/esm/shared/SetMinMaxDialog.js +12 -19
- package/esm/shared/SharedWiggleConfigSchema.d.ts +0 -26
- package/esm/shared/SharedWiggleConfigSchema.js +1 -30
- package/esm/shared/SharedWiggleMixin.d.ts +26 -231
- package/esm/shared/SharedWiggleMixin.js +8 -178
- package/esm/shared/YScaleBar.d.ts +1 -2
- package/esm/shared/YScaleBar.js +2 -2
- package/esm/util.d.ts +0 -28
- package/esm/util.js +1 -45
- package/package.json +3 -6
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -66
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -38
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const
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const stopToken_1 = require("@jbrowse/core/util/stopToken");
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const fast_deep_equal_1 = __importDefault(require("fast-deep-equal"));
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const react_d3_axis_mod_1 = require("react-d3-axis-mod");
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const SharedWiggleMixin_1 = __importDefault(require("../shared/SharedWiggleMixin"));
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const util_2 = require("../util");
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// lazies
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|
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['xyplot', 'MultiXYPlotRenderer'],
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self.rendererTypeName === 'MultiRowLineRenderer');
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|
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self.rendererTypeName === 'MultiLineRenderer');
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|
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self.rendererTypeName === 'MultiDensityRenderer');
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|
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|
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|
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* boxes since their track is drawn with the color. sort of a stylistic
|
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* choice
|
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*/
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get renderColorBoxes() {
|
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|
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|
|
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|
self.rendererTypeName === 'MultiRowXYPlotRenderer');
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|
},
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|
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|
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|
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|
|
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|
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* tracklabels for everything else
|
|
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|
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*/
|
|
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|
get prefersOffset() {
|
|
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|
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|
|
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|
},
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|
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|
|
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|
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|
|
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|
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*/
|
|
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|
get sources() {
|
|
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|
var _a;
|
|
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141
|
const sources = Object.fromEntries(((_a = self.sourcesVolatile) === null || _a === void 0 ? void 0 : _a.map(s => [s.name, s])) || []);
|
|
@@ -198,34 +149,19 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
198
149
|
(!this.isMultiRow ? colors_1.set1[i] || randomColor() : 'blue'),
|
|
199
150
|
}));
|
|
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|
},
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|
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|
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|
|
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|
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|
|
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|
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|
|
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|
get quantitativeStatsReady() {
|
|
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|
const view = (0, util_1.getContainingView)(self);
|
|
206
|
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return (view.initialized &&
|
|
207
|
-
self.featureDensityStatsReady &&
|
|
208
|
-
!self.regionTooLarge &&
|
|
209
|
-
!self.error);
|
|
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|
+
return (view.initialized && self.statsReadyAndRegionNotTooLarge && !self.error);
|
|
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|
},
|
|
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156
|
}))
|
|
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|
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|
|
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|
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/**
|
|
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|
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|
|
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|
-
*/
|
|
216
158
|
get rowHeight() {
|
|
217
159
|
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|
|
218
160
|
return isMultiRow ? height / ((sources === null || sources === void 0 ? void 0 : sources.length) || 1) : height;
|
|
219
161
|
},
|
|
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|
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/**
|
|
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|
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* #getter
|
|
222
|
-
*/
|
|
223
162
|
get rowHeightTooSmallForScalebar() {
|
|
224
163
|
return this.rowHeight < 70;
|
|
225
164
|
},
|
|
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|
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/**
|
|
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|
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* #getter
|
|
228
|
-
*/
|
|
229
165
|
get useMinimalTicks() {
|
|
230
166
|
return ((0, configuration_1.getConf)(self, 'minimalTicks') || this.rowHeightTooSmallForScalebar);
|
|
231
167
|
},
|
|
@@ -233,9 +169,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
233
169
|
.views(self => {
|
|
234
170
|
const { renderProps: superRenderProps } = self;
|
|
235
171
|
return {
|
|
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|
-
/**
|
|
237
|
-
* #method
|
|
238
|
-
*/
|
|
239
172
|
adapterProps() {
|
|
240
173
|
const superProps = superRenderProps();
|
|
241
174
|
return {
|
|
@@ -248,9 +181,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
248
181
|
sources: self.sources,
|
|
249
182
|
};
|
|
250
183
|
},
|
|
251
|
-
/**
|
|
252
|
-
* #getter
|
|
253
|
-
*/
|
|
254
184
|
get ticks() {
|
|
255
185
|
const { scaleType, domain, isMultiRow, rowHeight, useMinimalTicks } = self;
|
|
256
186
|
if (!domain) {
|
|
@@ -265,9 +195,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
265
195
|
}), 4);
|
|
266
196
|
return useMinimalTicks ? { ...ticks, values: domain } : ticks;
|
|
267
197
|
},
|
|
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|
-
/**
|
|
269
|
-
* #getter
|
|
270
|
-
*/
|
|
271
198
|
get colors() {
|
|
272
199
|
return [
|
|
273
200
|
'red',
|
|
@@ -282,10 +209,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
282
209
|
'pink',
|
|
283
210
|
];
|
|
284
211
|
},
|
|
285
|
-
/**
|
|
286
|
-
* #getter
|
|
287
|
-
* unused currently
|
|
288
|
-
*/
|
|
289
212
|
get quantitativeStatsRelevantToCurrentZoom() {
|
|
290
213
|
var _a;
|
|
291
214
|
const view = (0, util_1.getContainingView)(self);
|
|
@@ -294,9 +217,18 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
294
217
|
};
|
|
295
218
|
})
|
|
296
219
|
.views(self => ({
|
|
297
|
-
|
|
298
|
-
|
|
299
|
-
|
|
220
|
+
get legendFontSize() {
|
|
221
|
+
return Math.min(self.rowHeight, 12);
|
|
222
|
+
},
|
|
223
|
+
get canDisplayLegendLabels() {
|
|
224
|
+
return self.rowHeight > 11;
|
|
225
|
+
},
|
|
226
|
+
get labelWidth() {
|
|
227
|
+
var _a;
|
|
228
|
+
const minWidth = 20;
|
|
229
|
+
return (0, util_1.max)(((_a = self.sources) === null || _a === void 0 ? void 0 : _a.map(s => (0, util_1.measureText)(s.name, this.legendFontSize)).map(width => (this.canDisplayLegendLabels ? width : minWidth))) ||
|
|
230
|
+
[]);
|
|
231
|
+
},
|
|
300
232
|
renderProps() {
|
|
301
233
|
const superProps = self.adapterProps();
|
|
302
234
|
return {
|
|
@@ -317,21 +249,12 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
317
249
|
},
|
|
318
250
|
};
|
|
319
251
|
},
|
|
320
|
-
/**
|
|
321
|
-
* #getter
|
|
322
|
-
*/
|
|
323
252
|
get hasResolution() {
|
|
324
253
|
return self.adapterCapabilities.includes('hasResolution');
|
|
325
254
|
},
|
|
326
|
-
/**
|
|
327
|
-
* #getter
|
|
328
|
-
*/
|
|
329
255
|
get hasGlobalStats() {
|
|
330
256
|
return self.adapterCapabilities.includes('hasGlobalStats');
|
|
331
257
|
},
|
|
332
|
-
/**
|
|
333
|
-
* #getter
|
|
334
|
-
*/
|
|
335
258
|
get fillSetting() {
|
|
336
259
|
if (self.filled) {
|
|
337
260
|
return 0;
|
|
@@ -348,9 +271,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
348
271
|
const { trackMenuItems: superTrackMenuItems } = self;
|
|
349
272
|
const hasRenderings = (0, configuration_1.getConf)(self, 'defaultRendering');
|
|
350
273
|
return {
|
|
351
|
-
/**
|
|
352
|
-
* #method
|
|
353
|
-
*/
|
|
354
274
|
trackMenuItems() {
|
|
355
275
|
return [
|
|
356
276
|
...superTrackMenuItems(),
|
|
@@ -423,7 +343,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
423
343
|
const { renderSvg: superRenderSvg } = self;
|
|
424
344
|
return {
|
|
425
345
|
afterAttach() {
|
|
426
|
-
// eslint-disable-next-line @typescript-eslint/no-floating-promises
|
|
427
346
|
;
|
|
428
347
|
(async () => {
|
|
429
348
|
try {
|
|
@@ -442,9 +361,6 @@ function stateModelFactory(pluginManager, configSchema) {
|
|
|
442
361
|
}
|
|
443
362
|
})();
|
|
444
363
|
},
|
|
445
|
-
/**
|
|
446
|
-
* #action
|
|
447
|
-
*/
|
|
448
364
|
async renderSvg(opts) {
|
|
449
365
|
const { renderSvg } = await Promise.resolve().then(() => __importStar(require('./renderSvg')));
|
|
450
366
|
return renderSvg(self, opts, superRenderSvg);
|
|
@@ -1,4 +1,3 @@
|
|
|
1
|
-
import
|
|
2
|
-
import { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
|
|
3
|
-
|
|
4
|
-
export declare function renderSvg(self: WiggleDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<React.JSX.Element>;
|
|
1
|
+
import type { WiggleDisplayModel } from './model';
|
|
2
|
+
import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
|
|
3
|
+
export declare function renderSvg(self: WiggleDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<import("react/jsx-runtime").JSX.Element>;
|
|
@@ -4,15 +4,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
6
|
exports.renderSvg = renderSvg;
|
|
7
|
-
const
|
|
7
|
+
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
8
8
|
const util_1 = require("@jbrowse/core/util");
|
|
9
9
|
const mobx_1 = require("mobx");
|
|
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react_1.default.createElement(YScaleBars_1.default, { model: self, orientation: "left", exportSVG: true }))));
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return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("g", { children: await superRenderSvg(opts) }), (0, jsx_runtime_1.jsx)("g", { transform: `translate(${Math.max(-offsetPx, 0)})`, children: (0, jsx_runtime_1.jsx)(YScaleBars_1.default, { model: self, orientation: "left", exportSVG: true }) })] }));
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declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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import
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import type { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
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draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
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reducedFeatures: Feature[];
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var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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})();
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const util_1 = require("@jbrowse/core/util");
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const drawLine_1 = require("../drawLine");
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const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
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class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {
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|
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|
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// @ts-expect-error
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async draw(ctx, props) {
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const { bpPerPx, sources, regions, features } = props;
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const groups = (0, util_1.groupBy)(features.values(), f => f.get('source'));
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|
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|
|
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|
const width = (region.end - region.start) / bpPerPx;
|
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|
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const { drawLine } = await Promise.resolve().then(() => __importStar(require('../drawLine')));
|
|
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|
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|
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|
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|
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|
...props,
|
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|
features: groups[source.name] || [],
|
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|
height,
|
|
@@ -1,15 +1,9 @@
|
|
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1
1
|
declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
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|
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/**
|
|
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|
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* #slot
|
|
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|
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*/
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type: string;
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description: string;
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defaultValue: boolean;
|
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|
};
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/**
|
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|
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* #slot
|
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|
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*/
|
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summaryScoreMode: {
|
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type: string;
|
|
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|
model: import("mobx-state-tree").ISimpleType<string>;
|
|
@@ -3,25 +3,16 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
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|
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|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
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|
};
|
|
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5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
7
6
|
const configuration_1 = require("@jbrowse/core/configuration");
|
|
7
|
+
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
8
8
|
const configSchema_1 = __importDefault(require("../configSchema"));
|
|
9
|
-
|
|
10
|
-
* #config MultiRowLineRenderer
|
|
11
|
-
*/
|
|
12
|
-
function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
|
|
9
|
+
function x() { }
|
|
13
10
|
const configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowLineRenderer', {
|
|
14
|
-
/**
|
|
15
|
-
* #slot
|
|
16
|
-
*/
|
|
17
11
|
displayCrossHatches: {
|
|
18
12
|
type: 'boolean',
|
|
19
13
|
description: 'choose to draw cross hatches (sideways lines)',
|
|
20
14
|
defaultValue: false,
|
|
21
15
|
},
|
|
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|
-
/**
|
|
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|
-
* #slot
|
|
24
|
-
*/
|
|
25
16
|
summaryScoreMode: {
|
|
26
17
|
type: 'stringEnum',
|
|
27
18
|
model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
|
|
@@ -29,9 +20,6 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowLineRende
|
|
|
29
20
|
defaultValue: 'avg',
|
|
30
21
|
},
|
|
31
22
|
}, {
|
|
32
|
-
/**
|
|
33
|
-
* #baseConfiguration
|
|
34
|
-
*/
|
|
35
23
|
baseConfiguration: configSchema_1.default,
|
|
36
24
|
explicitlyTyped: true,
|
|
37
25
|
});
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
import PluginManager from '@jbrowse/core/PluginManager';
|
|
1
|
+
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
2
2
|
export default function MultiRowLineRendererF(pluginManager: PluginManager): void;
|
|
@@ -1,5 +1,6 @@
|
|
|
1
|
-
import
|
|
2
|
-
import
|
|
1
|
+
import WiggleBaseRenderer from '../WiggleBaseRenderer';
|
|
2
|
+
import type { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
|
|
3
|
+
import type { Feature } from '@jbrowse/core/util';
|
|
3
4
|
export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
|
|
4
5
|
draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
|
|
5
6
|
reducedFeatures: Feature[];
|
|
@@ -1,23 +1,55 @@
|
|
|
1
1
|
"use strict";
|
|
2
|
+
var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
|
|
3
|
+
if (k2 === undefined) k2 = k;
|
|
4
|
+
var desc = Object.getOwnPropertyDescriptor(m, k);
|
|
5
|
+
if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
|
|
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|
+
desc = { enumerable: true, get: function() { return m[k]; } };
|
|
7
|
+
}
|
|
8
|
+
Object.defineProperty(o, k2, desc);
|
|
9
|
+
}) : (function(o, m, k, k2) {
|
|
10
|
+
if (k2 === undefined) k2 = k;
|
|
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|
+
o[k2] = m[k];
|
|
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|
+
}));
|
|
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|
+
var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
|
|
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|
+
Object.defineProperty(o, "default", { enumerable: true, value: v });
|
|
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|
+
}) : function(o, v) {
|
|
16
|
+
o["default"] = v;
|
|
17
|
+
});
|
|
18
|
+
var __importStar = (this && this.__importStar) || (function () {
|
|
19
|
+
var ownKeys = function(o) {
|
|
20
|
+
ownKeys = Object.getOwnPropertyNames || function (o) {
|
|
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|
+
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|
|
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|
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|
|
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|
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|
|
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|
+
};
|
|
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|
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|
|
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|
+
};
|
|
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|
+
return function (mod) {
|
|
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|
+
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|
|
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|
+
var result = {};
|
|
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|
+
if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
|
|
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|
+
__setModuleDefault(result, mod);
|
|
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|
+
return result;
|
|
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|
+
};
|
|
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|
+
})();
|
|
2
35
|
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
36
|
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|
|
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|
};
|
|
5
38
|
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|
|
6
39
|
const util_1 = require("@jbrowse/core/util");
|
|
7
|
-
const drawXY_1 = require("../drawXY");
|
|
8
40
|
const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
|
|
9
41
|
class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
|
|
10
|
-
// @ts-expect-error
|
|
11
42
|
async draw(ctx, props) {
|
|
12
43
|
const { bpPerPx, sources, regions, features } = props;
|
|
13
44
|
const region = regions[0];
|
|
14
45
|
const groups = (0, util_1.groupBy)(features.values(), f => f.get('source'));
|
|
15
46
|
const height = props.height / sources.length;
|
|
16
47
|
const width = (region.end - region.start) / bpPerPx;
|
|
48
|
+
const { drawXY } = await Promise.resolve().then(() => __importStar(require('../drawXY')));
|
|
17
49
|
let feats = [];
|
|
18
50
|
ctx.save();
|
|
19
51
|
sources.forEach(source => {
|
|
20
|
-
const { reducedFeatures } =
|
|
52
|
+
const { reducedFeatures } = drawXY(ctx, {
|
|
21
53
|
...props,
|
|
22
54
|
features: groups[source.name] || [],
|
|
23
55
|
height,
|
|
@@ -1,31 +1,19 @@
|
|
|
1
1
|
declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
-
/**
|
|
3
|
-
* #slot
|
|
4
|
-
*/
|
|
5
2
|
filled: {
|
|
6
3
|
type: string;
|
|
7
4
|
defaultValue: boolean;
|
|
8
5
|
};
|
|
9
|
-
/**
|
|
10
|
-
* #slot
|
|
11
|
-
*/
|
|
12
6
|
displayCrossHatches: {
|
|
13
7
|
type: string;
|
|
14
8
|
description: string;
|
|
15
9
|
defaultValue: boolean;
|
|
16
10
|
};
|
|
17
|
-
/**
|
|
18
|
-
* #slot
|
|
19
|
-
*/
|
|
20
11
|
summaryScoreMode: {
|
|
21
12
|
type: string;
|
|
22
13
|
model: import("mobx-state-tree").ISimpleType<string>;
|
|
23
14
|
description: string;
|
|
24
15
|
defaultValue: string;
|
|
25
16
|
};
|
|
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|
-
/**
|
|
27
|
-
* #slot
|
|
28
|
-
*/
|
|
29
17
|
minSize: {
|
|
30
18
|
type: string;
|
|
31
19
|
defaultValue: number;
|