@jbrowse/plugin-wiggle 2.17.0 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (318) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +4 -3
  2. package/dist/BigWigAdapter/BigWigAdapter.js +3 -8
  3. package/dist/BigWigAdapter/configSchema.d.ts +0 -9
  4. package/dist/BigWigAdapter/configSchema.js +1 -13
  5. package/dist/BigWigAdapter/index.d.ts +1 -1
  6. package/dist/BigWigAdapter/index.js +17 -7
  7. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
  8. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +14 -49
  9. package/dist/CreateMultiWiggleExtension/index.d.ts +1 -1
  10. package/dist/CreateMultiWiggleExtension/index.js +43 -33
  11. package/dist/DensityRenderer/DensityRenderer.d.ts +2 -1
  12. package/dist/DensityRenderer/DensityRenderer.js +35 -2
  13. package/dist/DensityRenderer/configSchema.js +1 -7
  14. package/dist/DensityRenderer/index.d.ts +1 -1
  15. package/dist/DensityRenderer/index.js +1 -1
  16. package/dist/GuessAdapter/index.d.ts +2 -0
  17. package/dist/GuessAdapter/index.js +25 -0
  18. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
  19. package/dist/LinePlotRenderer/LinePlotRenderer.js +35 -2
  20. package/dist/LinePlotRenderer/configSchema.d.ts +0 -3
  21. package/dist/LinePlotRenderer/configSchema.js +1 -10
  22. package/dist/LinePlotRenderer/index.d.ts +1 -1
  23. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
  24. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +23 -59
  25. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
  26. package/dist/LinearWiggleDisplay/components/Tooltip.js +5 -18
  27. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  28. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +11 -14
  29. package/dist/LinearWiggleDisplay/configSchema.d.ts +1 -12
  30. package/dist/LinearWiggleDisplay/configSchema.js +0 -15
  31. package/dist/LinearWiggleDisplay/index.d.ts +1 -1
  32. package/dist/LinearWiggleDisplay/index.js +18 -8
  33. package/dist/LinearWiggleDisplay/model.d.ts +44 -79
  34. package/dist/LinearWiggleDisplay/model.js +39 -71
  35. package/dist/LinearWiggleDisplay/renderSvg.d.ts +3 -4
  36. package/dist/LinearWiggleDisplay/renderSvg.js +2 -6
  37. package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
  38. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +40 -6
  39. package/dist/MultiDensityRenderer/configSchema.js +1 -7
  40. package/dist/MultiDensityRenderer/index.d.ts +1 -1
  41. package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
  42. package/dist/MultiLineRenderer/MultiLineRenderer.js +35 -3
  43. package/dist/MultiLineRenderer/configSchema.d.ts +0 -6
  44. package/dist/MultiLineRenderer/configSchema.js +1 -13
  45. package/dist/MultiLineRenderer/index.d.ts +1 -1
  46. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
  47. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
  48. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
  49. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +17 -0
  50. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
  51. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +15 -0
  52. package/dist/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
  53. package/dist/MultiLinearWiggleDisplay/components/LegendItem.js +19 -0
  54. package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
  55. package/dist/MultiLinearWiggleDisplay/components/RectBg.js +2 -5
  56. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
  57. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +2 -4
  58. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
  59. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +21 -60
  60. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
  61. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +80 -97
  62. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
  63. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
  64. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  65. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
  66. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
  67. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +7 -27
  68. package/dist/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
  69. package/dist/MultiLinearWiggleDisplay/components/util.js +1 -1
  70. package/dist/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
  71. package/dist/MultiLinearWiggleDisplay/configSchema.js +1 -19
  72. package/dist/MultiLinearWiggleDisplay/index.d.ts +1 -1
  73. package/dist/MultiLinearWiggleDisplay/index.js +18 -8
  74. package/dist/MultiLinearWiggleDisplay/model.d.ts +27 -146
  75. package/dist/MultiLinearWiggleDisplay/model.js +44 -128
  76. package/dist/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
  77. package/dist/MultiLinearWiggleDisplay/renderSvg.js +2 -5
  78. package/dist/MultiLinearWiggleDisplay/util.d.ts +1 -0
  79. package/dist/MultiLinearWiggleDisplay/util.js +10 -0
  80. package/dist/MultiQuantitativeTrack/configSchema.d.ts +1 -1
  81. package/dist/MultiQuantitativeTrack/configSchema.js +1 -7
  82. package/dist/MultiQuantitativeTrack/index.d.ts +1 -1
  83. package/dist/MultiQuantitativeTrack/index.js +1 -1
  84. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
  85. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +35 -3
  86. package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -6
  87. package/dist/MultiRowLineRenderer/configSchema.js +2 -14
  88. package/dist/MultiRowLineRenderer/index.d.ts +1 -1
  89. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
  90. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +35 -3
  91. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
  92. package/dist/MultiRowXYPlotRenderer/configSchema.js +2 -20
  93. package/dist/MultiRowXYPlotRenderer/index.d.ts +1 -1
  94. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
  95. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +8 -13
  96. package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -6
  97. package/dist/MultiWiggleAdapter/configSchema.js +1 -10
  98. package/dist/MultiWiggleAdapter/index.d.ts +1 -1
  99. package/dist/MultiWiggleAdapter/index.js +18 -8
  100. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
  101. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -104
  102. package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
  103. package/dist/MultiWiggleAddTrackWorkflow/index.js +18 -9
  104. package/dist/MultiWiggleRendering.d.ts +4 -5
  105. package/dist/MultiWiggleRendering.js +6 -29
  106. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
  107. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +36 -4
  108. package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -12
  109. package/dist/MultiXYPlotRenderer/configSchema.js +1 -19
  110. package/dist/MultiXYPlotRenderer/index.d.ts +1 -1
  111. package/dist/QuantitativeTrack/configSchema.d.ts +1 -1
  112. package/dist/QuantitativeTrack/configSchema.js +1 -7
  113. package/dist/QuantitativeTrack/index.d.ts +1 -1
  114. package/dist/QuantitativeTrack/index.js +1 -1
  115. package/dist/Tooltip.d.ts +2 -3
  116. package/dist/Tooltip.js +7 -34
  117. package/dist/WiggleBaseRenderer.d.ts +8 -11
  118. package/dist/WiggleBaseRenderer.js +0 -1
  119. package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
  120. package/dist/WiggleRPC/MultiWiggleGetSources.js +2 -29
  121. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
  122. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
  123. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
  124. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
  125. package/dist/WiggleRendering.d.ts +3 -4
  126. package/dist/WiggleRendering.js +5 -30
  127. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
  128. package/dist/XYPlotRenderer/XYPlotRenderer.js +37 -6
  129. package/dist/XYPlotRenderer/configSchema.d.ts +0 -12
  130. package/dist/XYPlotRenderer/configSchema.js +2 -20
  131. package/dist/XYPlotRenderer/index.d.ts +1 -1
  132. package/dist/configSchema.d.ts +0 -18
  133. package/dist/configSchema.js +1 -23
  134. package/dist/drawDensity.d.ts +3 -3
  135. package/dist/drawDensity.js +0 -4
  136. package/dist/drawLine.d.ts +3 -3
  137. package/dist/drawLine.js +0 -5
  138. package/dist/drawXY.d.ts +4 -3
  139. package/dist/drawXY.js +28 -12
  140. package/dist/getMultiWiggleSourcesAutorun.d.ts +2 -2
  141. package/dist/getMultiWiggleSourcesAutorun.js +10 -7
  142. package/dist/getQuantitativeStats.d.ts +3 -3
  143. package/dist/getQuantitativeStats.js +2 -10
  144. package/dist/getQuantitativeStatsAutorun.d.ts +3 -3
  145. package/dist/getQuantitativeStatsAutorun.js +18 -20
  146. package/dist/index.d.ts +7 -7
  147. package/dist/index.js +40 -58
  148. package/dist/shared/SetMinMaxDialog.d.ts +1 -2
  149. package/dist/shared/SetMinMaxDialog.js +12 -42
  150. package/dist/shared/SharedWiggleConfigSchema.d.ts +0 -26
  151. package/dist/shared/SharedWiggleConfigSchema.js +1 -30
  152. package/dist/shared/SharedWiggleMixin.d.ts +26 -231
  153. package/dist/shared/SharedWiggleMixin.js +24 -184
  154. package/dist/shared/YScaleBar.d.ts +1 -2
  155. package/dist/shared/YScaleBar.js +2 -5
  156. package/dist/util.d.ts +0 -28
  157. package/dist/util.js +1 -45
  158. package/esm/BigWigAdapter/BigWigAdapter.d.ts +4 -3
  159. package/esm/BigWigAdapter/BigWigAdapter.js +5 -10
  160. package/esm/BigWigAdapter/configSchema.d.ts +0 -9
  161. package/esm/BigWigAdapter/configSchema.js +1 -13
  162. package/esm/BigWigAdapter/index.d.ts +1 -1
  163. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
  164. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +14 -26
  165. package/esm/CreateMultiWiggleExtension/index.d.ts +1 -1
  166. package/esm/CreateMultiWiggleExtension/index.js +26 -26
  167. package/esm/DensityRenderer/DensityRenderer.d.ts +2 -1
  168. package/esm/DensityRenderer/DensityRenderer.js +1 -1
  169. package/esm/DensityRenderer/configSchema.js +1 -7
  170. package/esm/DensityRenderer/index.d.ts +1 -1
  171. package/esm/DensityRenderer/index.js +1 -1
  172. package/esm/GuessAdapter/index.d.ts +2 -0
  173. package/esm/GuessAdapter/index.js +22 -0
  174. package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
  175. package/esm/LinePlotRenderer/LinePlotRenderer.js +1 -1
  176. package/esm/LinePlotRenderer/configSchema.d.ts +0 -3
  177. package/esm/LinePlotRenderer/configSchema.js +1 -10
  178. package/esm/LinePlotRenderer/index.d.ts +1 -1
  179. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
  180. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +23 -36
  181. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
  182. package/esm/LinearWiggleDisplay/components/Tooltip.js +5 -18
  183. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  184. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +12 -15
  185. package/esm/LinearWiggleDisplay/configSchema.d.ts +1 -12
  186. package/esm/LinearWiggleDisplay/configSchema.js +0 -15
  187. package/esm/LinearWiggleDisplay/index.d.ts +1 -1
  188. package/esm/LinearWiggleDisplay/index.js +1 -1
  189. package/esm/LinearWiggleDisplay/model.d.ts +44 -79
  190. package/esm/LinearWiggleDisplay/model.js +24 -66
  191. package/esm/LinearWiggleDisplay/renderSvg.d.ts +3 -4
  192. package/esm/LinearWiggleDisplay/renderSvg.js +2 -6
  193. package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
  194. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +5 -4
  195. package/esm/MultiDensityRenderer/configSchema.js +1 -7
  196. package/esm/MultiDensityRenderer/index.d.ts +1 -1
  197. package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
  198. package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
  199. package/esm/MultiLineRenderer/configSchema.d.ts +0 -6
  200. package/esm/MultiLineRenderer/configSchema.js +1 -13
  201. package/esm/MultiLineRenderer/index.d.ts +1 -1
  202. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
  203. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
  204. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
  205. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +12 -0
  206. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
  207. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +10 -0
  208. package/esm/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
  209. package/esm/MultiLinearWiggleDisplay/components/LegendItem.js +14 -0
  210. package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
  211. package/esm/MultiLinearWiggleDisplay/components/RectBg.js +2 -2
  212. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
  213. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +3 -5
  214. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
  215. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +22 -38
  216. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
  217. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +64 -91
  218. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
  219. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
  220. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  221. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
  222. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
  223. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +8 -28
  224. package/esm/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
  225. package/esm/MultiLinearWiggleDisplay/components/util.js +1 -1
  226. package/esm/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
  227. package/esm/MultiLinearWiggleDisplay/configSchema.js +1 -19
  228. package/esm/MultiLinearWiggleDisplay/index.d.ts +1 -1
  229. package/esm/MultiLinearWiggleDisplay/index.js +1 -1
  230. package/esm/MultiLinearWiggleDisplay/model.d.ts +27 -146
  231. package/esm/MultiLinearWiggleDisplay/model.js +27 -121
  232. package/esm/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
  233. package/esm/MultiLinearWiggleDisplay/renderSvg.js +2 -5
  234. package/esm/MultiLinearWiggleDisplay/util.d.ts +1 -0
  235. package/esm/MultiLinearWiggleDisplay/util.js +7 -0
  236. package/esm/MultiQuantitativeTrack/configSchema.d.ts +1 -1
  237. package/esm/MultiQuantitativeTrack/configSchema.js +1 -7
  238. package/esm/MultiQuantitativeTrack/index.d.ts +1 -1
  239. package/esm/MultiQuantitativeTrack/index.js +1 -1
  240. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
  241. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
  242. package/esm/MultiRowLineRenderer/configSchema.d.ts +0 -6
  243. package/esm/MultiRowLineRenderer/configSchema.js +2 -14
  244. package/esm/MultiRowLineRenderer/index.d.ts +1 -1
  245. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
  246. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
  247. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
  248. package/esm/MultiRowXYPlotRenderer/configSchema.js +2 -20
  249. package/esm/MultiRowXYPlotRenderer/index.d.ts +1 -1
  250. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
  251. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +9 -14
  252. package/esm/MultiWiggleAdapter/configSchema.d.ts +0 -6
  253. package/esm/MultiWiggleAdapter/configSchema.js +1 -10
  254. package/esm/MultiWiggleAdapter/index.d.ts +1 -1
  255. package/esm/MultiWiggleAdapter/index.js +1 -1
  256. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
  257. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -80
  258. package/esm/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
  259. package/esm/MultiWiggleAddTrackWorkflow/index.js +1 -2
  260. package/esm/MultiWiggleRendering.d.ts +4 -5
  261. package/esm/MultiWiggleRendering.js +6 -6
  262. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
  263. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -3
  264. package/esm/MultiXYPlotRenderer/configSchema.d.ts +0 -12
  265. package/esm/MultiXYPlotRenderer/configSchema.js +1 -19
  266. package/esm/MultiXYPlotRenderer/index.d.ts +1 -1
  267. package/esm/QuantitativeTrack/configSchema.d.ts +1 -1
  268. package/esm/QuantitativeTrack/configSchema.js +1 -7
  269. package/esm/QuantitativeTrack/index.d.ts +1 -1
  270. package/esm/QuantitativeTrack/index.js +1 -1
  271. package/esm/Tooltip.d.ts +2 -3
  272. package/esm/Tooltip.js +7 -11
  273. package/esm/WiggleBaseRenderer.d.ts +8 -11
  274. package/esm/WiggleBaseRenderer.js +0 -1
  275. package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
  276. package/esm/WiggleRPC/MultiWiggleGetSources.js +2 -29
  277. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
  278. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
  279. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
  280. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
  281. package/esm/WiggleRendering.d.ts +3 -4
  282. package/esm/WiggleRendering.js +5 -7
  283. package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
  284. package/esm/XYPlotRenderer/XYPlotRenderer.js +3 -5
  285. package/esm/XYPlotRenderer/configSchema.d.ts +0 -12
  286. package/esm/XYPlotRenderer/configSchema.js +2 -20
  287. package/esm/XYPlotRenderer/index.d.ts +1 -1
  288. package/esm/configSchema.d.ts +0 -18
  289. package/esm/configSchema.js +1 -23
  290. package/esm/drawDensity.d.ts +3 -3
  291. package/esm/drawDensity.js +1 -5
  292. package/esm/drawLine.d.ts +3 -3
  293. package/esm/drawLine.js +1 -6
  294. package/esm/drawXY.d.ts +4 -3
  295. package/esm/drawXY.js +29 -13
  296. package/esm/getMultiWiggleSourcesAutorun.d.ts +2 -2
  297. package/esm/getMultiWiggleSourcesAutorun.js +9 -6
  298. package/esm/getQuantitativeStats.d.ts +3 -3
  299. package/esm/getQuantitativeStats.js +3 -11
  300. package/esm/getQuantitativeStatsAutorun.d.ts +3 -3
  301. package/esm/getQuantitativeStatsAutorun.js +18 -20
  302. package/esm/index.d.ts +7 -7
  303. package/esm/index.js +14 -42
  304. package/esm/shared/SetMinMaxDialog.d.ts +1 -2
  305. package/esm/shared/SetMinMaxDialog.js +12 -19
  306. package/esm/shared/SharedWiggleConfigSchema.d.ts +0 -26
  307. package/esm/shared/SharedWiggleConfigSchema.js +1 -30
  308. package/esm/shared/SharedWiggleMixin.d.ts +26 -231
  309. package/esm/shared/SharedWiggleMixin.js +8 -178
  310. package/esm/shared/YScaleBar.d.ts +1 -2
  311. package/esm/shared/YScaleBar.js +2 -2
  312. package/esm/util.d.ts +0 -28
  313. package/esm/util.js +1 -45
  314. package/package.json +3 -6
  315. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
  316. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -66
  317. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
  318. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -38
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+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
25
35
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
36
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
37
  };
28
38
  Object.defineProperty(exports, "__esModule", { value: true });
29
39
  exports.stateModelFactory = stateModelFactory;
30
40
  const react_1 = require("react");
31
- const mobx_state_tree_1 = require("mobx-state-tree");
32
- const react_d3_axis_mod_1 = require("react-d3-axis-mod");
33
- const fast_deep_equal_1 = __importDefault(require("fast-deep-equal"));
34
- // jbrowse imports
35
41
  const configuration_1 = require("@jbrowse/core/configuration");
36
- const util_1 = require("@jbrowse/core/util");
37
42
  const colors_1 = require("@jbrowse/core/ui/colors");
38
- // locals
39
- const util_2 = require("../util");
43
+ const util_1 = require("@jbrowse/core/util");
44
+ const stopToken_1 = require("@jbrowse/core/util/stopToken");
45
+ const fast_deep_equal_1 = __importDefault(require("fast-deep-equal"));
46
+ const mobx_state_tree_1 = require("mobx-state-tree");
47
+ const react_d3_axis_mod_1 = require("react-d3-axis-mod");
40
48
  const SharedWiggleMixin_1 = __importDefault(require("../shared/SharedWiggleMixin"));
49
+ const util_2 = require("../util");
41
50
  const randomColor = () => '#000000'.replaceAll('0', () => (~~(Math.random() * 16)).toString(16));
42
- // lazies
43
51
  const Tooltip = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/Tooltip'))));
44
52
  const SetColorDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/SetColorDialog'))));
45
- // using a map because it preserves order
46
53
  const rendererTypes = new Map([
47
54
  ['xyplot', 'MultiXYPlotRenderer'],
48
55
  ['multirowxy', 'MultiRowXYPlotRenderer'],
@@ -50,71 +57,46 @@ const rendererTypes = new Map([
50
57
  ['multiline', 'MultiLineRenderer'],
51
58
  ['multirowline', 'MultiRowLineRenderer'],
52
59
  ]);
53
- /**
54
- * #stateModel MultiLinearWiggleDisplay
55
- * extends
56
- * - [SharedWiggleMixin](../sharedwigglemixin)
57
- */
58
- function stateModelFactory(pluginManager, configSchema) {
60
+ function stateModelFactory(_pluginManager, configSchema) {
59
61
  return mobx_state_tree_1.types
60
62
  .compose('MultiLinearWiggleDisplay', (0, SharedWiggleMixin_1.default)(configSchema), mobx_state_tree_1.types.model({
61
- /**
62
- * #property
63
- */
64
63
  type: mobx_state_tree_1.types.literal('MultiLinearWiggleDisplay'),
65
- /**
66
- * #property
67
- */
68
64
  layout: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.frozen(), []),
69
65
  }))
70
66
  .volatile(() => ({
67
+ sourcesLoadingStopToken: undefined,
71
68
  featureUnderMouseVolatile: undefined,
72
69
  sourcesVolatile: undefined,
73
70
  }))
74
71
  .actions(self => ({
75
- /**
76
- * #action
77
- */
72
+ setSourcesLoading(str) {
73
+ if (self.sourcesLoadingStopToken) {
74
+ (0, stopToken_1.stopStopToken)(self.sourcesLoadingStopToken);
75
+ }
76
+ self.sourcesLoadingStopToken = str;
77
+ },
78
78
  setLayout(layout) {
79
79
  self.layout = layout;
80
80
  },
81
- /**
82
- * #action
83
- */
84
81
  clearLayout() {
85
82
  self.layout = [];
86
83
  },
87
- /**
88
- * #action
89
- */
90
84
  setSources(sources) {
91
85
  if (!(0, fast_deep_equal_1.default)(sources, self.sourcesVolatile)) {
92
86
  self.sourcesVolatile = sources;
93
87
  }
94
88
  },
95
- /**
96
- * #action
97
- */
98
89
  setFeatureUnderMouse(f) {
99
90
  self.featureUnderMouseVolatile = f;
100
91
  },
101
92
  }))
102
93
  .views(self => ({
103
- /**
104
- * #getter
105
- */
106
94
  get featureUnderMouse() {
107
95
  return self.featureUnderMouseVolatile;
108
96
  },
109
- /**
110
- * #getter
111
- */
112
97
  get TooltipComponent() {
113
98
  return Tooltip;
114
99
  },
115
- /**
116
- * #getter
117
- */
118
100
  get rendererTypeName() {
119
101
  const name = self.rendererTypeNameSimple;
120
102
  const rendererType = rendererTypes.get(name);
@@ -125,66 +107,35 @@ function stateModelFactory(pluginManager, configSchema) {
125
107
  },
126
108
  }))
127
109
  .views(self => ({
128
- /**
129
- * #getter
130
- */
131
110
  get needsScalebar() {
132
111
  return (self.rendererTypeName === 'MultiXYPlotRenderer' ||
133
112
  self.rendererTypeName === 'MultiRowXYPlotRenderer' ||
134
113
  self.rendererTypeName === 'MultiLineRenderer' ||
135
114
  self.rendererTypeName === 'MultiRowLineRenderer');
136
115
  },
137
- /**
138
- * #getter
139
- */
140
116
  get needsFullHeightScalebar() {
141
117
  return (self.rendererTypeName === 'MultiXYPlotRenderer' ||
142
118
  self.rendererTypeName === 'MultiLineRenderer');
143
119
  },
144
- /**
145
- * #getter
146
- */
147
120
  get isMultiRow() {
148
121
  return (self.rendererTypeName === 'MultiRowXYPlotRenderer' ||
149
122
  self.rendererTypeName === 'MultiRowLineRenderer' ||
150
123
  self.rendererTypeName === 'MultiDensityRenderer');
151
124
  },
152
- /**
153
- * #getter
154
- * can be used to give it a "color scale" like a R heatmap, not
155
- * implemented like this yet but flag can be used for this
156
- */
157
125
  get needsCustomLegend() {
158
126
  return self.rendererTypeName === 'MultiDensityRenderer';
159
127
  },
160
- /**
161
- * #getter
162
- */
163
128
  get canHaveFill() {
164
129
  return (self.rendererTypeName === 'MultiXYPlotRenderer' ||
165
130
  self.rendererTypeName === 'MultiRowXYPlotRenderer');
166
131
  },
167
- /**
168
- * #getter
169
- * the multirowxy and multiline don't need to use colors on the legend
170
- * boxes since their track is drawn with the color. sort of a stylistic
171
- * choice
172
- */
173
132
  get renderColorBoxes() {
174
133
  return !(self.rendererTypeName === 'MultiRowLineRenderer' ||
175
134
  self.rendererTypeName === 'MultiRowXYPlotRenderer');
176
135
  },
177
- /**
178
- * #getter
179
- * positions multi-row below the tracklabel even if using overlap
180
- * tracklabels for everything else
181
- */
182
136
  get prefersOffset() {
183
137
  return this.isMultiRow;
184
138
  },
185
- /**
186
- * #getter
187
- */
188
139
  get sources() {
189
140
  var _a;
190
141
  const sources = Object.fromEntries(((_a = self.sourcesVolatile) === null || _a === void 0 ? void 0 : _a.map(s => [s.name, s])) || []);
@@ -198,34 +149,19 @@ function stateModelFactory(pluginManager, configSchema) {
198
149
  (!this.isMultiRow ? colors_1.set1[i] || randomColor() : 'blue'),
199
150
  }));
200
151
  },
201
- /**
202
- * #getter
203
- */
204
152
  get quantitativeStatsReady() {
205
153
  const view = (0, util_1.getContainingView)(self);
206
- return (view.initialized &&
207
- self.featureDensityStatsReady &&
208
- !self.regionTooLarge &&
209
- !self.error);
154
+ return (view.initialized && self.statsReadyAndRegionNotTooLarge && !self.error);
210
155
  },
211
156
  }))
212
157
  .views(self => ({
213
- /**
214
- * #getter
215
- */
216
158
  get rowHeight() {
217
159
  const { sources, height, isMultiRow } = self;
218
160
  return isMultiRow ? height / ((sources === null || sources === void 0 ? void 0 : sources.length) || 1) : height;
219
161
  },
220
- /**
221
- * #getter
222
- */
223
162
  get rowHeightTooSmallForScalebar() {
224
163
  return this.rowHeight < 70;
225
164
  },
226
- /**
227
- * #getter
228
- */
229
165
  get useMinimalTicks() {
230
166
  return ((0, configuration_1.getConf)(self, 'minimalTicks') || this.rowHeightTooSmallForScalebar);
231
167
  },
@@ -233,9 +169,6 @@ function stateModelFactory(pluginManager, configSchema) {
233
169
  .views(self => {
234
170
  const { renderProps: superRenderProps } = self;
235
171
  return {
236
- /**
237
- * #method
238
- */
239
172
  adapterProps() {
240
173
  const superProps = superRenderProps();
241
174
  return {
@@ -248,9 +181,6 @@ function stateModelFactory(pluginManager, configSchema) {
248
181
  sources: self.sources,
249
182
  };
250
183
  },
251
- /**
252
- * #getter
253
- */
254
184
  get ticks() {
255
185
  const { scaleType, domain, isMultiRow, rowHeight, useMinimalTicks } = self;
256
186
  if (!domain) {
@@ -265,9 +195,6 @@ function stateModelFactory(pluginManager, configSchema) {
265
195
  }), 4);
266
196
  return useMinimalTicks ? { ...ticks, values: domain } : ticks;
267
197
  },
268
- /**
269
- * #getter
270
- */
271
198
  get colors() {
272
199
  return [
273
200
  'red',
@@ -282,10 +209,6 @@ function stateModelFactory(pluginManager, configSchema) {
282
209
  'pink',
283
210
  ];
284
211
  },
285
- /**
286
- * #getter
287
- * unused currently
288
- */
289
212
  get quantitativeStatsRelevantToCurrentZoom() {
290
213
  var _a;
291
214
  const view = (0, util_1.getContainingView)(self);
@@ -294,9 +217,18 @@ function stateModelFactory(pluginManager, configSchema) {
294
217
  };
295
218
  })
296
219
  .views(self => ({
297
- /**
298
- * #method
299
- */
220
+ get legendFontSize() {
221
+ return Math.min(self.rowHeight, 12);
222
+ },
223
+ get canDisplayLegendLabels() {
224
+ return self.rowHeight > 11;
225
+ },
226
+ get labelWidth() {
227
+ var _a;
228
+ const minWidth = 20;
229
+ return (0, util_1.max)(((_a = self.sources) === null || _a === void 0 ? void 0 : _a.map(s => (0, util_1.measureText)(s.name, this.legendFontSize)).map(width => (this.canDisplayLegendLabels ? width : minWidth))) ||
230
+ []);
231
+ },
300
232
  renderProps() {
301
233
  const superProps = self.adapterProps();
302
234
  return {
@@ -317,21 +249,12 @@ function stateModelFactory(pluginManager, configSchema) {
317
249
  },
318
250
  };
319
251
  },
320
- /**
321
- * #getter
322
- */
323
252
  get hasResolution() {
324
253
  return self.adapterCapabilities.includes('hasResolution');
325
254
  },
326
- /**
327
- * #getter
328
- */
329
255
  get hasGlobalStats() {
330
256
  return self.adapterCapabilities.includes('hasGlobalStats');
331
257
  },
332
- /**
333
- * #getter
334
- */
335
258
  get fillSetting() {
336
259
  if (self.filled) {
337
260
  return 0;
@@ -348,9 +271,6 @@ function stateModelFactory(pluginManager, configSchema) {
348
271
  const { trackMenuItems: superTrackMenuItems } = self;
349
272
  const hasRenderings = (0, configuration_1.getConf)(self, 'defaultRendering');
350
273
  return {
351
- /**
352
- * #method
353
- */
354
274
  trackMenuItems() {
355
275
  return [
356
276
  ...superTrackMenuItems(),
@@ -423,7 +343,6 @@ function stateModelFactory(pluginManager, configSchema) {
423
343
  const { renderSvg: superRenderSvg } = self;
424
344
  return {
425
345
  afterAttach() {
426
- // eslint-disable-next-line @typescript-eslint/no-floating-promises
427
346
  ;
428
347
  (async () => {
429
348
  try {
@@ -442,9 +361,6 @@ function stateModelFactory(pluginManager, configSchema) {
442
361
  }
443
362
  })();
444
363
  },
445
- /**
446
- * #action
447
- */
448
364
  async renderSvg(opts) {
449
365
  const { renderSvg } = await Promise.resolve().then(() => __importStar(require('./renderSvg')));
450
366
  return renderSvg(self, opts, superRenderSvg);
@@ -1,4 +1,3 @@
1
- import React from 'react';
2
- import { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
3
- import { WiggleDisplayModel } from './model';
4
- export declare function renderSvg(self: WiggleDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<React.JSX.Element>;
1
+ import type { WiggleDisplayModel } from './model';
2
+ import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view';
3
+ export declare function renderSvg(self: WiggleDisplayModel, opts: ExportSvgDisplayOptions, superRenderSvg: (opts: ExportSvgDisplayOptions) => Promise<React.ReactNode>): Promise<import("react/jsx-runtime").JSX.Element>;
@@ -4,15 +4,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
6
  exports.renderSvg = renderSvg;
7
- const react_1 = __importDefault(require("react"));
7
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
8
  const util_1 = require("@jbrowse/core/util");
9
9
  const mobx_1 = require("mobx");
10
10
  const YScaleBars_1 = __importDefault(require("./components/YScaleBars"));
11
11
  async function renderSvg(self, opts, superRenderSvg) {
12
12
  await (0, mobx_1.when)(() => !!self.stats && !!self.regionCannotBeRenderedText);
13
13
  const { offsetPx } = (0, util_1.getContainingView)(self);
14
- return (react_1.default.createElement(react_1.default.Fragment, null,
15
- react_1.default.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
16
- react_1.default.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
17
- react_1.default.createElement(YScaleBars_1.default, { model: self, orientation: "left", exportSVG: true }))));
14
+ return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("g", { children: await superRenderSvg(opts) }), (0, jsx_runtime_1.jsx)("g", { transform: `translate(${Math.max(-offsetPx, 0)})`, children: (0, jsx_runtime_1.jsx)(YScaleBars_1.default, { model: self, orientation: "left", exportSVG: true }) })] }));
18
15
  }
@@ -0,0 +1 @@
1
+ export declare function randomColor(str: string): string;
@@ -0,0 +1,10 @@
1
+ "use strict";
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ exports.randomColor = randomColor;
4
+ function randomColor(str) {
5
+ let sum = 0;
6
+ for (let i = 0; i < str.length; i++) {
7
+ sum += str.charCodeAt(i);
8
+ }
9
+ return `hsl(${sum * 10}, 20%, 50%)`;
10
+ }
@@ -1,4 +1,4 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
1
+ import type PluginManager from '@jbrowse/core/PluginManager';
2
2
  declare const configSchema: (pluginManager: PluginManager) => import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
3
3
  name: {
4
4
  description: string;
@@ -2,15 +2,9 @@
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  const configuration_1 = require("@jbrowse/core/configuration");
4
4
  const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
5
- /**
6
- * #config MultiQuantitativeTrack
7
- */
8
- function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
5
+ function x() { }
9
6
  const configSchema = (pluginManager) => {
10
7
  return (0, configuration_1.ConfigurationSchema)('MultiQuantitativeTrack', {}, {
11
- /**
12
- * #baseConfiguration
13
- */
14
8
  baseConfiguration: (0, models_1.createBaseTrackConfig)(pluginManager),
15
9
  });
16
10
  };
@@ -1,2 +1,2 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
1
+ import type PluginManager from '@jbrowse/core/PluginManager';
2
2
  export default function MultiQuantitativeTrackF(pluginManager: PluginManager): void;
@@ -4,8 +4,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
6
  exports.default = MultiQuantitativeTrackF;
7
- const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
8
7
  const TrackType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
8
+ const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
9
9
  const configSchema_1 = __importDefault(require("./configSchema"));
10
10
  function MultiQuantitativeTrackF(pluginManager) {
11
11
  pluginManager.addTrackType(() => {
@@ -1,5 +1,6 @@
1
- import { Feature } from '@jbrowse/core/util';
2
- import WiggleBaseRenderer, { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
1
+ import WiggleBaseRenderer from '../WiggleBaseRenderer';
2
+ import type { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
3
+ import type { Feature } from '@jbrowse/core/util';
3
4
  export default class MultiRowLineRenderer extends WiggleBaseRenderer {
4
5
  draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
5
6
  reducedFeatures: Feature[];
@@ -1,23 +1,55 @@
1
1
  "use strict";
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
17
+ });
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
2
35
  var __importDefault = (this && this.__importDefault) || function (mod) {
3
36
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
37
  };
5
38
  Object.defineProperty(exports, "__esModule", { value: true });
6
39
  const util_1 = require("@jbrowse/core/util");
7
- const drawLine_1 = require("../drawLine");
8
40
  const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
9
41
  class MultiRowLineRenderer extends WiggleBaseRenderer_1.default {
10
- // @ts-expect-error
11
42
  async draw(ctx, props) {
12
43
  const { bpPerPx, sources, regions, features } = props;
13
44
  const region = regions[0];
14
45
  const groups = (0, util_1.groupBy)(features.values(), f => f.get('source'));
15
46
  const height = props.height / sources.length;
16
47
  const width = (region.end - region.start) / bpPerPx;
48
+ const { drawLine } = await Promise.resolve().then(() => __importStar(require('../drawLine')));
17
49
  let feats = [];
18
50
  ctx.save();
19
51
  sources.forEach(source => {
20
- const { reducedFeatures } = (0, drawLine_1.drawLine)(ctx, {
52
+ const { reducedFeatures } = drawLine(ctx, {
21
53
  ...props,
22
54
  features: groups[source.name] || [],
23
55
  height,
@@ -1,15 +1,9 @@
1
1
  declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
- /**
3
- * #slot
4
- */
5
2
  displayCrossHatches: {
6
3
  type: string;
7
4
  description: string;
8
5
  defaultValue: boolean;
9
6
  };
10
- /**
11
- * #slot
12
- */
13
7
  summaryScoreMode: {
14
8
  type: string;
15
9
  model: import("mobx-state-tree").ISimpleType<string>;
@@ -3,25 +3,16 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- const mobx_state_tree_1 = require("mobx-state-tree");
7
6
  const configuration_1 = require("@jbrowse/core/configuration");
7
+ const mobx_state_tree_1 = require("mobx-state-tree");
8
8
  const configSchema_1 = __importDefault(require("../configSchema"));
9
- /**
10
- * #config MultiRowLineRenderer
11
- */
12
- function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
9
+ function x() { }
13
10
  const configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowLineRenderer', {
14
- /**
15
- * #slot
16
- */
17
11
  displayCrossHatches: {
18
12
  type: 'boolean',
19
13
  description: 'choose to draw cross hatches (sideways lines)',
20
14
  defaultValue: false,
21
15
  },
22
- /**
23
- * #slot
24
- */
25
16
  summaryScoreMode: {
26
17
  type: 'stringEnum',
27
18
  model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
@@ -29,9 +20,6 @@ const configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowLineRende
29
20
  defaultValue: 'avg',
30
21
  },
31
22
  }, {
32
- /**
33
- * #baseConfiguration
34
- */
35
23
  baseConfiguration: configSchema_1.default,
36
24
  explicitlyTyped: true,
37
25
  });
@@ -1,2 +1,2 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
1
+ import type PluginManager from '@jbrowse/core/PluginManager';
2
2
  export default function MultiRowLineRendererF(pluginManager: PluginManager): void;
@@ -1,5 +1,6 @@
1
- import { Feature } from '@jbrowse/core/util';
2
- import WiggleBaseRenderer, { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
1
+ import WiggleBaseRenderer from '../WiggleBaseRenderer';
2
+ import type { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
3
+ import type { Feature } from '@jbrowse/core/util';
3
4
  export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
4
5
  draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
5
6
  reducedFeatures: Feature[];
@@ -1,23 +1,55 @@
1
1
  "use strict";
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
17
+ });
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
2
35
  var __importDefault = (this && this.__importDefault) || function (mod) {
3
36
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
37
  };
5
38
  Object.defineProperty(exports, "__esModule", { value: true });
6
39
  const util_1 = require("@jbrowse/core/util");
7
- const drawXY_1 = require("../drawXY");
8
40
  const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
9
41
  class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
10
- // @ts-expect-error
11
42
  async draw(ctx, props) {
12
43
  const { bpPerPx, sources, regions, features } = props;
13
44
  const region = regions[0];
14
45
  const groups = (0, util_1.groupBy)(features.values(), f => f.get('source'));
15
46
  const height = props.height / sources.length;
16
47
  const width = (region.end - region.start) / bpPerPx;
48
+ const { drawXY } = await Promise.resolve().then(() => __importStar(require('../drawXY')));
17
49
  let feats = [];
18
50
  ctx.save();
19
51
  sources.forEach(source => {
20
- const { reducedFeatures } = (0, drawXY_1.drawXY)(ctx, {
52
+ const { reducedFeatures } = drawXY(ctx, {
21
53
  ...props,
22
54
  features: groups[source.name] || [],
23
55
  height,
@@ -1,31 +1,19 @@
1
1
  declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
- /**
3
- * #slot
4
- */
5
2
  filled: {
6
3
  type: string;
7
4
  defaultValue: boolean;
8
5
  };
9
- /**
10
- * #slot
11
- */
12
6
  displayCrossHatches: {
13
7
  type: string;
14
8
  description: string;
15
9
  defaultValue: boolean;
16
10
  };
17
- /**
18
- * #slot
19
- */
20
11
  summaryScoreMode: {
21
12
  type: string;
22
13
  model: import("mobx-state-tree").ISimpleType<string>;
23
14
  description: string;
24
15
  defaultValue: string;
25
16
  };
26
- /**
27
- * #slot
28
- */
29
17
  minSize: {
30
18
  type: string;
31
19
  defaultValue: number;