@jbrowse/plugin-wiggle 2.17.0 → 3.0.0

package/dist/MultiXYPlotRenderer/configSchema.js

@@ -6,46 +6,28 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const configuration_1 = require("@jbrowse/core/configuration");
 const mobx_state_tree_1 = require("mobx-state-tree");
 const configSchema_1 = __importDefault(require("../configSchema"));
-/**
- * #config MultiXYPlotRenderer
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+function x() { }
 const configSchema = (0, configuration_1.ConfigurationSchema)('MultiXYPlotRenderer', {
-    /**
-     * #slot
-     */
     filled: {
         type: 'boolean',
         defaultValue: true,
     },
-    /**
-     * #slot
-     */
     displayCrossHatches: {
         type: 'boolean',
         description: 'choose to draw cross hatches (sideways lines)',
         defaultValue: false,
     },
-    /**
-     * #slot
-     */
     summaryScoreMode: {
         type: 'stringEnum',
         model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
         description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
         defaultValue: 'avg',
     },
-    /**
-     * #slot
-     */
     minSize: {
         type: 'number',
         defaultValue: 0.7,
     },
 }, {
-    /**
-     * #baseConfiguration
-     */
     baseConfiguration: configSchema_1.default,
     explicitlyTyped: true,
 });

package/dist/MultiXYPlotRenderer/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function MultiXYPlotRendererF(pluginManager: PluginManager): void;

package/dist/QuantitativeTrack/configSchema.d.ts

@@ -1,4 +1,4 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     name: {
         description: string;

package/dist/QuantitativeTrack/configSchema.js

@@ -2,15 +2,9 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 const configuration_1 = require("@jbrowse/core/configuration");
 const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
-/**
- * #config QuantitativeTrack
- */
-function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
+function x() { }
 function configSchemaFactory(pluginManager) {
     return (0, configuration_1.ConfigurationSchema)('QuantitativeTrack', {}, {
-        /**
-         * #baseConfiguration
-         */
         baseConfiguration: (0, models_1.createBaseTrackConfig)(pluginManager),
     });
 }

package/dist/QuantitativeTrack/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function QuantitativeTrackF(pluginManager: PluginManager): void;

package/dist/QuantitativeTrack/index.js

@@ -4,8 +4,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.default = QuantitativeTrackF;
-const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
 const TrackType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
+const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
 const configSchema_1 = __importDefault(require("./configSchema"));
 function QuantitativeTrackF(pluginManager) {
     pluginManager.addTrackType(() => {

package/dist/Tooltip.d.ts

@@ -1,5 +1,4 @@
-import React from 'react';
-import { Feature } from '@jbrowse/core/util';
+import type { Feature } from '@jbrowse/core/util';
 type Coord = [number, number];
 export type TooltipContentsComponent = React.ForwardRefExoticComponent<{
     feature: Feature;
@@ -15,5 +14,5 @@ declare const Tooltip: ({ model, height, clientMouseCoord, offsetMouseCoord, cli
     offsetMouseCoord: Coord;
     clientRect?: DOMRect;
     TooltipContents: TooltipContentsComponent;
-}) => React.JSX.Element | null;
+}) => import("react/jsx-runtime").JSX.Element | null;
 export default Tooltip;

package/dist/Tooltip.js

@@ -1,36 +1,13 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
+const BaseTooltip_1 = __importDefault(require("@jbrowse/core/ui/BaseTooltip"));
 const mobx_react_1 = require("mobx-react");
 const mui_1 = require("tss-react/mui");
-const BaseTooltip_1 = __importDefault(require("@jbrowse/core/ui/BaseTooltip"));
-// locals
 const util_1 = require("./util");
 const useStyles = (0, mui_1.makeStyles)()({
     hoverVertical: {
@@ -49,13 +26,9 @@ const Tooltip = (0, mobx_react_1.observer)(function Tooltip({ model, height, cli
     const { classes } = useStyles();
     const x = clientMouseCoord[0] + 5;
     const y = useClientY ? clientMouseCoord[1] : (clientRect === null || clientRect === void 0 ? void 0 : clientRect.top) || 0;
-    return featureUnderMouse ? (react_1.default.createElement(react_1.default.Fragment, null,
-        react_1.default.createElement(react_1.Suspense, { fallback: null },
-            react_1.default.createElement(BaseTooltip_1.default, { clientPoint: { x, y } },
-                react_1.default.createElement(TooltipContents, { model: model, feature: featureUnderMouse }))),
-        react_1.default.createElement("div", { className: classes.hoverVertical, style: {
-                left: offsetMouseCoord[0],
-                height: height - util_1.YSCALEBAR_LABEL_OFFSET * 2,
-            } }))) : null;
+    return featureUnderMouse ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(BaseTooltip_1.default, { clientPoint: { x, y }, children: (0, jsx_runtime_1.jsx)(TooltipContents, { model: model, feature: featureUnderMouse }) }) }), (0, jsx_runtime_1.jsx)("div", { className: classes.hoverVertical, style: {
+                    left: offsetMouseCoord[0],
+                    height: height - util_1.YSCALEBAR_LABEL_OFFSET * 2,
+                } })] })) : null;
 });
 exports.default = Tooltip;

package/dist/WiggleBaseRenderer.d.ts

@@ -1,7 +1,8 @@
-import FeatureRendererType, { RenderArgs as FeatureRenderArgs, RenderArgsDeserialized as FeatureRenderArgsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
-import { Feature } from '@jbrowse/core/util';
-import { ThemeOptions } from '@mui/material';
-import { ScaleOpts, Source } from './util';
+import FeatureRendererType from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
+import type { ScaleOpts, Source } from './util';
+import type { RenderArgs as FeatureRenderArgs, RenderArgsDeserialized as FeatureRenderArgsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
+import type { Feature } from '@jbrowse/core/util';
+import type { ThemeOptions } from '@mui/material';
 export interface RenderArgs extends FeatureRenderArgs {
     scaleOpts: ScaleOpts;
 }
@@ -30,14 +31,14 @@ export default abstract class WiggleBaseRenderer extends FeatureRendererType {
         width: number;
         containsNoTransferables: boolean;
         canvasRecordedData: any;
-        reactElement?: import("react").ReactElement;
+        reactElement?: React.ReactElement;
         html?: string;
     } | {
         features: Map<string, Feature>;
         height: number;
         width: number;
         containsNoTransferables: boolean;
-        reactElement: React.JSX.Element;
+        reactElement: import("react/jsx-runtime").JSX.Element;
         html?: string;
     } | {
         features: Map<string, Feature>;
@@ -45,13 +46,9 @@ export default abstract class WiggleBaseRenderer extends FeatureRendererType {
         width: number;
         containsNoTransferables: boolean;
         imageData: any;
-        reactElement?: import("react").ReactElement;
+        reactElement?: React.ReactElement;
         html?: string;
     }>;
-    /**
-     * draw features to context given props, to be used by derived renderer
-     * classes
-     */
     abstract draw<T extends RenderArgsDeserializedWithFeatures>(ctx: CanvasRenderingContext2D, props: T): Promise<Record<string, unknown> | undefined>;
 }
 export type { RenderArgsSerialized, RenderResults, ResultsDeserialized, ResultsSerialized, } from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';

package/dist/WiggleBaseRenderer.js

@@ -15,7 +15,6 @@ class WiggleBaseRenderer extends FeatureRendererType_1.default {
         const { height, regions, bpPerPx } = renderProps;
         const region = regions[0];
         const width = (region.end - region.start) / bpPerPx;
-        // @ts-expect-error
         const { reducedFeatures, ...rest } = await (0, util_1.renderToAbstractCanvas)(width, height, renderProps, ctx => this.draw(ctx, {
             ...renderProps,
             features,

package/dist/WiggleRPC/MultiWiggleGetSources.d.ts

@@ -1,18 +1,11 @@
-import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
-import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
-import { Region } from '@jbrowse/core/util';
-import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration';
-export declare class MultiWiggleGetSources extends RpcMethodType {
+import RpcMethodTypeWithFiltersAndRenameRegions from '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions';
+import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import type { Region } from '@jbrowse/core/util';
+export declare class MultiWiggleGetSources extends RpcMethodTypeWithFiltersAndRenameRegions {
     name: string;
-    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
-    serializeArguments(args: RenderArgs & {
-        signal?: AbortSignal;
-        statusCallback?: (arg: string) => void;
-    }, rpcDriverClassName: string): Promise<Record<string, unknown>>;
     execute(args: {
         adapterConfig: AnyConfigurationModel;
-        signal?: RemoteAbortSignal;
+        stopToken?: string;
         sessionId: string;
         headers?: Record<string, string>;
         regions: Region[];

package/dist/WiggleRPC/MultiWiggleGetSources.js

@@ -4,45 +4,18 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.MultiWiggleGetSources = void 0;
-const RpcMethodType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodType"));
-const serializableFilterChain_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain"));
 const dataAdapterCache_1 = require("@jbrowse/core/data_adapters/dataAdapterCache");
-const util_1 = require("@jbrowse/core/util");
-class MultiWiggleGetSources extends RpcMethodType_1.default {
+const RpcMethodTypeWithFiltersAndRenameRegions_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions"));
+class MultiWiggleGetSources extends RpcMethodTypeWithFiltersAndRenameRegions_1.default {
     constructor() {
         super(...arguments);
         this.name = 'MultiWiggleGetSources';
     }
-    async deserializeArguments(args, rpcDriverClassName) {
-        const l = await super.deserializeArguments(args, rpcDriverClassName);
-        return {
-            ...l,
-            filters: args.filters
-                ? new serializableFilterChain_1.default({
-                    filters: args.filters,
-                })
-                : undefined,
-        };
-    }
-    async serializeArguments(args, rpcDriverClassName) {
-        var _a, _b, _c;
-        const pm = this.pluginManager;
-        const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
-        if (!assemblyManager) {
-            return args;
-        }
-        const renamedArgs = await (0, util_1.renameRegionsIfNeeded)(assemblyManager, {
-            ...args,
-            filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
-        });
-        return super.serializeArguments(renamedArgs, rpcDriverClassName);
-    }
     async execute(args, rpcDriverClassName) {
         const pm = this.pluginManager;
         const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
         const { regions, adapterConfig, sessionId } = deserializedArgs;
         const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
-        // @ts-expect-error
         return dataAdapter.getSources(regions, deserializedArgs);
     }
 }

package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts

@@ -1,13 +1,11 @@
-import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
-import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
-import { QuantitativeStats } from '@jbrowse/core/util/stats';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration';
-export declare class WiggleGetGlobalQuantitativeStats extends RpcMethodType {
+import RpcMethodTypeWithFiltersAndRenameRegions from '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions';
+import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import type { QuantitativeStats } from '@jbrowse/core/util/stats';
+export declare class WiggleGetGlobalQuantitativeStats extends RpcMethodTypeWithFiltersAndRenameRegions {
     name: string;
-    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
     execute(args: {
         adapterConfig: AnyConfigurationModel;
-        signal?: RemoteAbortSignal;
+        stopToken?: string;
         headers?: Record<string, string>;
         sessionId: string;
     }, rpcDriverClassName: string): Promise<QuantitativeStats>;

package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js

@@ -4,31 +4,18 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.WiggleGetGlobalQuantitativeStats = void 0;
-const RpcMethodType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodType"));
-const serializableFilterChain_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain"));
 const dataAdapterCache_1 = require("@jbrowse/core/data_adapters/dataAdapterCache");
-class WiggleGetGlobalQuantitativeStats extends RpcMethodType_1.default {
+const RpcMethodTypeWithFiltersAndRenameRegions_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions"));
+class WiggleGetGlobalQuantitativeStats extends RpcMethodTypeWithFiltersAndRenameRegions_1.default {
     constructor() {
         super(...arguments);
         this.name = 'WiggleGetGlobalQuantitativeStats';
     }
-    async deserializeArguments(args, rpcDriverClassName) {
-        const l = await super.deserializeArguments(args, rpcDriverClassName);
-        return {
-            ...l,
-            filters: args.filters
-                ? new serializableFilterChain_1.default({
-                    filters: args.filters,
-                })
-                : undefined,
-        };
-    }
     async execute(args, rpcDriverClassName) {
         const pm = this.pluginManager;
         const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
         const { adapterConfig, sessionId } = deserializedArgs;
         const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
-        // @ts-expect-error
         return dataAdapter.getGlobalStats(deserializedArgs);
     }
 }

package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts

@@ -1,17 +1,10 @@
-import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
-import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
-import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
-import { Region } from '@jbrowse/core/util';
-export declare class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType {
+import RpcMethodTypeWithFiltersAndRenameRegions from '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions';
+import type { Region } from '@jbrowse/core/util';
+export declare class WiggleGetMultiRegionQuantitativeStats extends RpcMethodTypeWithFiltersAndRenameRegions {
     name: string;
-    deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
-    serializeArguments(args: RenderArgs & {
-        signal?: AbortSignal;
-        statusCallback?: (arg: string) => void;
-    }, rpcDriverClassName: string): Promise<Record<string, unknown>>;
     execute(args: {
         adapterConfig: Record<string, unknown>;
-        signal?: RemoteAbortSignal;
+        stopToken?: string;
         sessionId: string;
         headers?: Record<string, string>;
         regions: Region[];

package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js

@@ -4,45 +4,18 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.WiggleGetMultiRegionQuantitativeStats = void 0;
-const RpcMethodType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodType"));
-const serializableFilterChain_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain"));
 const dataAdapterCache_1 = require("@jbrowse/core/data_adapters/dataAdapterCache");
-const util_1 = require("@jbrowse/core/util");
-class WiggleGetMultiRegionQuantitativeStats extends RpcMethodType_1.default {
+const RpcMethodTypeWithFiltersAndRenameRegions_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions"));
+class WiggleGetMultiRegionQuantitativeStats extends RpcMethodTypeWithFiltersAndRenameRegions_1.default {
     constructor() {
         super(...arguments);
         this.name = 'WiggleGetMultiRegionQuantitativeStats';
     }
-    async deserializeArguments(args, rpcDriverClassName) {
-        const l = await super.deserializeArguments(args, rpcDriverClassName);
-        return {
-            ...l,
-            filters: args.filters
-                ? new serializableFilterChain_1.default({
-                    filters: args.filters,
-                })
-                : undefined,
-        };
-    }
-    async serializeArguments(args, rpcDriverClassName) {
-        var _a, _b, _c;
-        const pm = this.pluginManager;
-        const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
-        if (!assemblyManager) {
-            return args;
-        }
-        const renamedArgs = await (0, util_1.renameRegionsIfNeeded)(assemblyManager, {
-            ...args,
-            filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
-        });
-        return super.serializeArguments(renamedArgs, rpcDriverClassName);
-    }
     async execute(args, rpcDriverClassName) {
         const pm = this.pluginManager;
         const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
         const { regions, adapterConfig, sessionId } = deserializedArgs;
         const { dataAdapter } = await (0, dataAdapterCache_1.getAdapter)(pm, sessionId, adapterConfig);
-        // @ts-expect-error
         return dataAdapter.getMultiRegionQuantitativeStats(regions, deserializedArgs);
     }
 }

package/dist/WiggleRendering.d.ts

@@ -1,6 +1,5 @@
-import React from 'react';
-import { Region } from '@jbrowse/core/util/types';
-import { Feature } from '@jbrowse/core/util';
+import type { Feature } from '@jbrowse/core/util';
+import type { Region } from '@jbrowse/core/util/types';
 declare const WiggleRendering: (props: {
     regions: Region[];
     features: Map<string, Feature>;
@@ -11,5 +10,5 @@ declare const WiggleRendering: (props: {
     onMouseLeave?: (event: React.MouseEvent) => void;
     onMouseMove?: (event: React.MouseEvent, arg?: string) => void;
     onFeatureClick?: (event: React.MouseEvent, arg?: string) => void;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default WiggleRendering;

package/dist/WiggleRendering.js

@@ -1,37 +1,14 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 Object.defineProperty(exports, "__esModule", { value: true });
-const mobx_react_1 = require("mobx-react");
-const react_1 = __importStar(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
 const ui_1 = require("@jbrowse/core/ui");
+const mobx_react_1 = require("mobx-react");
 const WiggleRendering = (0, mobx_react_1.observer)(function (props) {
     const { regions, features, bpPerPx, width, height, onMouseLeave, onMouseMove, onFeatureClick, } = props;
     const region = regions[0];
     const ref = (0, react_1.useRef)(null);
     function getFeatureUnderMouse(eventClientX) {
-        // calculates feature under mouse
         let offset = 0;
         if (ref.current) {
             offset = ref.current.getBoundingClientRect().left;
@@ -41,7 +18,6 @@ const WiggleRendering = (0, mobx_react_1.observer)(function (props) {
         const clientBp = region.start + bpPerPx * px;
         let featureUnderMouse;
         for (const feature of features.values()) {
-            // bpPerPx added to the end to accommodate "reduced features" (one feature per px)
             if (clientBp <= feature.get('end') + bpPerPx &&
                 clientBp >= feature.get('start')) {
                 featureUnderMouse = feature;
@@ -50,11 +26,10 @@ const WiggleRendering = (0, mobx_react_1.observer)(function (props) {
         }
         return featureUnderMouse;
     }
-    return (react_1.default.createElement("div", { ref: ref, "data-testid": "wiggle-rendering-test", onMouseMove: e => { var _a; return onMouseMove === null || onMouseMove === void 0 ? void 0 : onMouseMove(e, (_a = getFeatureUnderMouse(e.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onClick: e => { var _a; return onFeatureClick === null || onFeatureClick === void 0 ? void 0 : onFeatureClick(e, (_a = getFeatureUnderMouse(e.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onMouseLeave: e => onMouseLeave === null || onMouseLeave === void 0 ? void 0 : onMouseLeave(e), style: {
+    return ((0, jsx_runtime_1.jsx)("div", { ref: ref, "data-testid": "wiggle-rendering-test", onMouseMove: e => { var _a; return onMouseMove === null || onMouseMove === void 0 ? void 0 : onMouseMove(e, (_a = getFeatureUnderMouse(e.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onClick: e => { var _a; return onFeatureClick === null || onFeatureClick === void 0 ? void 0 : onFeatureClick(e, (_a = getFeatureUnderMouse(e.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onMouseLeave: e => onMouseLeave === null || onMouseLeave === void 0 ? void 0 : onMouseLeave(e), style: {
             overflow: 'visible',
             position: 'relative',
             height,
-        } },
-        react_1.default.createElement(ui_1.PrerenderedCanvas, { ...props })));
+        }, children: (0, jsx_runtime_1.jsx)(ui_1.PrerenderedCanvas, { ...props }) }));
 });
 exports.default = WiggleRendering;

package/dist/XYPlotRenderer/XYPlotRenderer.d.ts

@@ -1,5 +1,6 @@
-import { Feature } from '@jbrowse/core/util';
-import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
+import WiggleBaseRenderer from '../WiggleBaseRenderer';
+import type { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
+import type { Feature } from '@jbrowse/core/util';
 export default class XYPlotRenderer extends WiggleBaseRenderer {
     draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
         reducedFeatures: Feature[];

package/dist/XYPlotRenderer/XYPlotRenderer.js

@@ -1,28 +1,59 @@
 "use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const configuration_1 = require("@jbrowse/core/configuration");
-const drawXY_1 = require("../drawXY");
 const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
 const util_1 = require("../util");
 class XYPlotRenderer extends WiggleBaseRenderer_1.default {
     async draw(ctx, props) {
-        const { features, config } = props;
-        // the adjusted height takes into account YSCALEBAR_LABEL_OFFSET from the
-        // wiggle display, and makes the height of the actual drawn area add
-        // "padding" to the top and bottom of the display
+        const { stopToken, features, config } = props;
+        const { drawXY } = await Promise.resolve().then(() => __importStar(require('../drawXY')));
         const pivotValue = (0, configuration_1.readConfObject)(config, 'bicolorPivotValue');
         const negColor = (0, configuration_1.readConfObject)(config, 'negColor');
         const posColor = (0, configuration_1.readConfObject)(config, 'posColor');
-        return (0, drawXY_1.drawXY)(ctx, {
+        return drawXY(ctx, {
             ...props,
             colorCallback: (0, configuration_1.readConfObject)(config, 'color') === '#f0f'
                 ? (_, score) => score < pivotValue ? negColor : posColor
                 : (feature, _score) => (0, configuration_1.readConfObject)(config, 'color', { feature }),
             offset: util_1.YSCALEBAR_LABEL_OFFSET,
             features: [...features.values()],
+            stopToken,
         });
     }
 }

package/dist/XYPlotRenderer/configSchema.d.ts

@@ -1,31 +1,19 @@
 declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    /**
-     * #slot
-     */
     filled: {
         type: string;
         defaultValue: boolean;
     };
-    /**
-     * #slot
-     */
     displayCrossHatches: {
         type: string;
         description: string;
         defaultValue: boolean;
     };
-    /**
-     * #slot
-     */
     summaryScoreMode: {
         type: string;
         model: import("mobx-state-tree").ISimpleType<string>;
         description: string;
         defaultValue: string;
     };
-    /**
-     * #slot
-     */
     minSize: {
         type: string;
         defaultValue: number;