@jbrowse/plugin-wiggle 2.17.0 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (318) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +4 -3
  2. package/dist/BigWigAdapter/BigWigAdapter.js +3 -8
  3. package/dist/BigWigAdapter/configSchema.d.ts +0 -9
  4. package/dist/BigWigAdapter/configSchema.js +1 -13
  5. package/dist/BigWigAdapter/index.d.ts +1 -1
  6. package/dist/BigWigAdapter/index.js +17 -7
  7. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
  8. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +14 -49
  9. package/dist/CreateMultiWiggleExtension/index.d.ts +1 -1
  10. package/dist/CreateMultiWiggleExtension/index.js +43 -33
  11. package/dist/DensityRenderer/DensityRenderer.d.ts +2 -1
  12. package/dist/DensityRenderer/DensityRenderer.js +35 -2
  13. package/dist/DensityRenderer/configSchema.js +1 -7
  14. package/dist/DensityRenderer/index.d.ts +1 -1
  15. package/dist/DensityRenderer/index.js +1 -1
  16. package/dist/GuessAdapter/index.d.ts +2 -0
  17. package/dist/GuessAdapter/index.js +25 -0
  18. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
  19. package/dist/LinePlotRenderer/LinePlotRenderer.js +35 -2
  20. package/dist/LinePlotRenderer/configSchema.d.ts +0 -3
  21. package/dist/LinePlotRenderer/configSchema.js +1 -10
  22. package/dist/LinePlotRenderer/index.d.ts +1 -1
  23. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
  24. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +23 -59
  25. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
  26. package/dist/LinearWiggleDisplay/components/Tooltip.js +5 -18
  27. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  28. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +11 -14
  29. package/dist/LinearWiggleDisplay/configSchema.d.ts +1 -12
  30. package/dist/LinearWiggleDisplay/configSchema.js +0 -15
  31. package/dist/LinearWiggleDisplay/index.d.ts +1 -1
  32. package/dist/LinearWiggleDisplay/index.js +18 -8
  33. package/dist/LinearWiggleDisplay/model.d.ts +44 -79
  34. package/dist/LinearWiggleDisplay/model.js +39 -71
  35. package/dist/LinearWiggleDisplay/renderSvg.d.ts +3 -4
  36. package/dist/LinearWiggleDisplay/renderSvg.js +2 -6
  37. package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
  38. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +40 -6
  39. package/dist/MultiDensityRenderer/configSchema.js +1 -7
  40. package/dist/MultiDensityRenderer/index.d.ts +1 -1
  41. package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
  42. package/dist/MultiLineRenderer/MultiLineRenderer.js +35 -3
  43. package/dist/MultiLineRenderer/configSchema.d.ts +0 -6
  44. package/dist/MultiLineRenderer/configSchema.js +1 -13
  45. package/dist/MultiLineRenderer/index.d.ts +1 -1
  46. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
  47. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
  48. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
  49. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +17 -0
  50. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
  51. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +15 -0
  52. package/dist/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
  53. package/dist/MultiLinearWiggleDisplay/components/LegendItem.js +19 -0
  54. package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
  55. package/dist/MultiLinearWiggleDisplay/components/RectBg.js +2 -5
  56. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
  57. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +2 -4
  58. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
  59. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +21 -60
  60. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
  61. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +80 -97
  62. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
  63. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
  64. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  65. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
  66. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
  67. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +7 -27
  68. package/dist/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
  69. package/dist/MultiLinearWiggleDisplay/components/util.js +1 -1
  70. package/dist/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
  71. package/dist/MultiLinearWiggleDisplay/configSchema.js +1 -19
  72. package/dist/MultiLinearWiggleDisplay/index.d.ts +1 -1
  73. package/dist/MultiLinearWiggleDisplay/index.js +18 -8
  74. package/dist/MultiLinearWiggleDisplay/model.d.ts +27 -146
  75. package/dist/MultiLinearWiggleDisplay/model.js +44 -128
  76. package/dist/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
  77. package/dist/MultiLinearWiggleDisplay/renderSvg.js +2 -5
  78. package/dist/MultiLinearWiggleDisplay/util.d.ts +1 -0
  79. package/dist/MultiLinearWiggleDisplay/util.js +10 -0
  80. package/dist/MultiQuantitativeTrack/configSchema.d.ts +1 -1
  81. package/dist/MultiQuantitativeTrack/configSchema.js +1 -7
  82. package/dist/MultiQuantitativeTrack/index.d.ts +1 -1
  83. package/dist/MultiQuantitativeTrack/index.js +1 -1
  84. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
  85. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +35 -3
  86. package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -6
  87. package/dist/MultiRowLineRenderer/configSchema.js +2 -14
  88. package/dist/MultiRowLineRenderer/index.d.ts +1 -1
  89. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
  90. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +35 -3
  91. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
  92. package/dist/MultiRowXYPlotRenderer/configSchema.js +2 -20
  93. package/dist/MultiRowXYPlotRenderer/index.d.ts +1 -1
  94. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
  95. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +8 -13
  96. package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -6
  97. package/dist/MultiWiggleAdapter/configSchema.js +1 -10
  98. package/dist/MultiWiggleAdapter/index.d.ts +1 -1
  99. package/dist/MultiWiggleAdapter/index.js +18 -8
  100. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
  101. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -104
  102. package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
  103. package/dist/MultiWiggleAddTrackWorkflow/index.js +18 -9
  104. package/dist/MultiWiggleRendering.d.ts +4 -5
  105. package/dist/MultiWiggleRendering.js +6 -29
  106. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
  107. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +36 -4
  108. package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -12
  109. package/dist/MultiXYPlotRenderer/configSchema.js +1 -19
  110. package/dist/MultiXYPlotRenderer/index.d.ts +1 -1
  111. package/dist/QuantitativeTrack/configSchema.d.ts +1 -1
  112. package/dist/QuantitativeTrack/configSchema.js +1 -7
  113. package/dist/QuantitativeTrack/index.d.ts +1 -1
  114. package/dist/QuantitativeTrack/index.js +1 -1
  115. package/dist/Tooltip.d.ts +2 -3
  116. package/dist/Tooltip.js +7 -34
  117. package/dist/WiggleBaseRenderer.d.ts +8 -11
  118. package/dist/WiggleBaseRenderer.js +0 -1
  119. package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
  120. package/dist/WiggleRPC/MultiWiggleGetSources.js +2 -29
  121. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
  122. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
  123. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
  124. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
  125. package/dist/WiggleRendering.d.ts +3 -4
  126. package/dist/WiggleRendering.js +5 -30
  127. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
  128. package/dist/XYPlotRenderer/XYPlotRenderer.js +37 -6
  129. package/dist/XYPlotRenderer/configSchema.d.ts +0 -12
  130. package/dist/XYPlotRenderer/configSchema.js +2 -20
  131. package/dist/XYPlotRenderer/index.d.ts +1 -1
  132. package/dist/configSchema.d.ts +0 -18
  133. package/dist/configSchema.js +1 -23
  134. package/dist/drawDensity.d.ts +3 -3
  135. package/dist/drawDensity.js +0 -4
  136. package/dist/drawLine.d.ts +3 -3
  137. package/dist/drawLine.js +0 -5
  138. package/dist/drawXY.d.ts +4 -3
  139. package/dist/drawXY.js +28 -12
  140. package/dist/getMultiWiggleSourcesAutorun.d.ts +2 -2
  141. package/dist/getMultiWiggleSourcesAutorun.js +10 -7
  142. package/dist/getQuantitativeStats.d.ts +3 -3
  143. package/dist/getQuantitativeStats.js +2 -10
  144. package/dist/getQuantitativeStatsAutorun.d.ts +3 -3
  145. package/dist/getQuantitativeStatsAutorun.js +18 -20
  146. package/dist/index.d.ts +7 -7
  147. package/dist/index.js +40 -58
  148. package/dist/shared/SetMinMaxDialog.d.ts +1 -2
  149. package/dist/shared/SetMinMaxDialog.js +12 -42
  150. package/dist/shared/SharedWiggleConfigSchema.d.ts +0 -26
  151. package/dist/shared/SharedWiggleConfigSchema.js +1 -30
  152. package/dist/shared/SharedWiggleMixin.d.ts +26 -231
  153. package/dist/shared/SharedWiggleMixin.js +24 -184
  154. package/dist/shared/YScaleBar.d.ts +1 -2
  155. package/dist/shared/YScaleBar.js +2 -5
  156. package/dist/util.d.ts +0 -28
  157. package/dist/util.js +1 -45
  158. package/esm/BigWigAdapter/BigWigAdapter.d.ts +4 -3
  159. package/esm/BigWigAdapter/BigWigAdapter.js +5 -10
  160. package/esm/BigWigAdapter/configSchema.d.ts +0 -9
  161. package/esm/BigWigAdapter/configSchema.js +1 -13
  162. package/esm/BigWigAdapter/index.d.ts +1 -1
  163. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
  164. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +14 -26
  165. package/esm/CreateMultiWiggleExtension/index.d.ts +1 -1
  166. package/esm/CreateMultiWiggleExtension/index.js +26 -26
  167. package/esm/DensityRenderer/DensityRenderer.d.ts +2 -1
  168. package/esm/DensityRenderer/DensityRenderer.js +1 -1
  169. package/esm/DensityRenderer/configSchema.js +1 -7
  170. package/esm/DensityRenderer/index.d.ts +1 -1
  171. package/esm/DensityRenderer/index.js +1 -1
  172. package/esm/GuessAdapter/index.d.ts +2 -0
  173. package/esm/GuessAdapter/index.js +22 -0
  174. package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
  175. package/esm/LinePlotRenderer/LinePlotRenderer.js +1 -1
  176. package/esm/LinePlotRenderer/configSchema.d.ts +0 -3
  177. package/esm/LinePlotRenderer/configSchema.js +1 -10
  178. package/esm/LinePlotRenderer/index.d.ts +1 -1
  179. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
  180. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +23 -36
  181. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
  182. package/esm/LinearWiggleDisplay/components/Tooltip.js +5 -18
  183. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  184. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +12 -15
  185. package/esm/LinearWiggleDisplay/configSchema.d.ts +1 -12
  186. package/esm/LinearWiggleDisplay/configSchema.js +0 -15
  187. package/esm/LinearWiggleDisplay/index.d.ts +1 -1
  188. package/esm/LinearWiggleDisplay/index.js +1 -1
  189. package/esm/LinearWiggleDisplay/model.d.ts +44 -79
  190. package/esm/LinearWiggleDisplay/model.js +24 -66
  191. package/esm/LinearWiggleDisplay/renderSvg.d.ts +3 -4
  192. package/esm/LinearWiggleDisplay/renderSvg.js +2 -6
  193. package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
  194. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +5 -4
  195. package/esm/MultiDensityRenderer/configSchema.js +1 -7
  196. package/esm/MultiDensityRenderer/index.d.ts +1 -1
  197. package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
  198. package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
  199. package/esm/MultiLineRenderer/configSchema.d.ts +0 -6
  200. package/esm/MultiLineRenderer/configSchema.js +1 -13
  201. package/esm/MultiLineRenderer/index.d.ts +1 -1
  202. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
  203. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
  204. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
  205. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +12 -0
  206. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
  207. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +10 -0
  208. package/esm/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
  209. package/esm/MultiLinearWiggleDisplay/components/LegendItem.js +14 -0
  210. package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
  211. package/esm/MultiLinearWiggleDisplay/components/RectBg.js +2 -2
  212. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
  213. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +3 -5
  214. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
  215. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +22 -38
  216. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
  217. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +64 -91
  218. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
  219. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
  220. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  221. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
  222. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
  223. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +8 -28
  224. package/esm/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
  225. package/esm/MultiLinearWiggleDisplay/components/util.js +1 -1
  226. package/esm/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
  227. package/esm/MultiLinearWiggleDisplay/configSchema.js +1 -19
  228. package/esm/MultiLinearWiggleDisplay/index.d.ts +1 -1
  229. package/esm/MultiLinearWiggleDisplay/index.js +1 -1
  230. package/esm/MultiLinearWiggleDisplay/model.d.ts +27 -146
  231. package/esm/MultiLinearWiggleDisplay/model.js +27 -121
  232. package/esm/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
  233. package/esm/MultiLinearWiggleDisplay/renderSvg.js +2 -5
  234. package/esm/MultiLinearWiggleDisplay/util.d.ts +1 -0
  235. package/esm/MultiLinearWiggleDisplay/util.js +7 -0
  236. package/esm/MultiQuantitativeTrack/configSchema.d.ts +1 -1
  237. package/esm/MultiQuantitativeTrack/configSchema.js +1 -7
  238. package/esm/MultiQuantitativeTrack/index.d.ts +1 -1
  239. package/esm/MultiQuantitativeTrack/index.js +1 -1
  240. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
  241. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
  242. package/esm/MultiRowLineRenderer/configSchema.d.ts +0 -6
  243. package/esm/MultiRowLineRenderer/configSchema.js +2 -14
  244. package/esm/MultiRowLineRenderer/index.d.ts +1 -1
  245. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
  246. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
  247. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
  248. package/esm/MultiRowXYPlotRenderer/configSchema.js +2 -20
  249. package/esm/MultiRowXYPlotRenderer/index.d.ts +1 -1
  250. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
  251. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +9 -14
  252. package/esm/MultiWiggleAdapter/configSchema.d.ts +0 -6
  253. package/esm/MultiWiggleAdapter/configSchema.js +1 -10
  254. package/esm/MultiWiggleAdapter/index.d.ts +1 -1
  255. package/esm/MultiWiggleAdapter/index.js +1 -1
  256. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
  257. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -80
  258. package/esm/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
  259. package/esm/MultiWiggleAddTrackWorkflow/index.js +1 -2
  260. package/esm/MultiWiggleRendering.d.ts +4 -5
  261. package/esm/MultiWiggleRendering.js +6 -6
  262. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
  263. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -3
  264. package/esm/MultiXYPlotRenderer/configSchema.d.ts +0 -12
  265. package/esm/MultiXYPlotRenderer/configSchema.js +1 -19
  266. package/esm/MultiXYPlotRenderer/index.d.ts +1 -1
  267. package/esm/QuantitativeTrack/configSchema.d.ts +1 -1
  268. package/esm/QuantitativeTrack/configSchema.js +1 -7
  269. package/esm/QuantitativeTrack/index.d.ts +1 -1
  270. package/esm/QuantitativeTrack/index.js +1 -1
  271. package/esm/Tooltip.d.ts +2 -3
  272. package/esm/Tooltip.js +7 -11
  273. package/esm/WiggleBaseRenderer.d.ts +8 -11
  274. package/esm/WiggleBaseRenderer.js +0 -1
  275. package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
  276. package/esm/WiggleRPC/MultiWiggleGetSources.js +2 -29
  277. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
  278. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
  279. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
  280. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
  281. package/esm/WiggleRendering.d.ts +3 -4
  282. package/esm/WiggleRendering.js +5 -7
  283. package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
  284. package/esm/XYPlotRenderer/XYPlotRenderer.js +3 -5
  285. package/esm/XYPlotRenderer/configSchema.d.ts +0 -12
  286. package/esm/XYPlotRenderer/configSchema.js +2 -20
  287. package/esm/XYPlotRenderer/index.d.ts +1 -1
  288. package/esm/configSchema.d.ts +0 -18
  289. package/esm/configSchema.js +1 -23
  290. package/esm/drawDensity.d.ts +3 -3
  291. package/esm/drawDensity.js +1 -5
  292. package/esm/drawLine.d.ts +3 -3
  293. package/esm/drawLine.js +1 -6
  294. package/esm/drawXY.d.ts +4 -3
  295. package/esm/drawXY.js +29 -13
  296. package/esm/getMultiWiggleSourcesAutorun.d.ts +2 -2
  297. package/esm/getMultiWiggleSourcesAutorun.js +9 -6
  298. package/esm/getQuantitativeStats.d.ts +3 -3
  299. package/esm/getQuantitativeStats.js +3 -11
  300. package/esm/getQuantitativeStatsAutorun.d.ts +3 -3
  301. package/esm/getQuantitativeStatsAutorun.js +18 -20
  302. package/esm/index.d.ts +7 -7
  303. package/esm/index.js +14 -42
  304. package/esm/shared/SetMinMaxDialog.d.ts +1 -2
  305. package/esm/shared/SetMinMaxDialog.js +12 -19
  306. package/esm/shared/SharedWiggleConfigSchema.d.ts +0 -26
  307. package/esm/shared/SharedWiggleConfigSchema.js +1 -30
  308. package/esm/shared/SharedWiggleMixin.d.ts +26 -231
  309. package/esm/shared/SharedWiggleMixin.js +8 -178
  310. package/esm/shared/YScaleBar.d.ts +1 -2
  311. package/esm/shared/YScaleBar.js +2 -2
  312. package/esm/util.d.ts +0 -28
  313. package/esm/util.js +1 -45
  314. package/package.json +3 -6
  315. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
  316. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -66
  317. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
  318. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -38
@@ -1,12 +1,9 @@
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  "use strict";
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- var __importDefault = (this && this.__importDefault) || function (mod) {
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- return (mod && mod.__esModule) ? mod : { "default": mod };
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- };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ const jsx_runtime_1 = require("react/jsx-runtime");
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  const util_1 = require("@jbrowse/core/util");
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- const react_1 = __importDefault(require("react"));
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  const RectBg = (props) => {
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  const { color = 'rgb(255,255,255,0.8)' } = props;
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- return react_1.default.createElement("rect", { ...props, ...(0, util_1.getFillProps)(color) });
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+ return (0, jsx_runtime_1.jsx)("rect", { ...props, ...(0, util_1.getFillProps)(color) });
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  };
12
9
  exports.default = RectBg;
@@ -1,6 +1,5 @@
1
- import React from 'react';
2
- import { WiggleDisplayModel } from '../model';
1
+ import type { WiggleDisplayModel } from '../model';
3
2
  declare const ScoreLegend: ({ model }: {
4
3
  model: WiggleDisplayModel;
5
- }) => React.JSX.Element;
4
+ }) => import("react/jsx-runtime").JSX.Element;
6
5
  export default ScoreLegend;
@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- const react_1 = __importDefault(require("react"));
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
7
  const util_1 = require("@jbrowse/core/util");
8
8
  const mobx_react_1 = require("mobx-react");
9
9
  const RectBg_1 = __importDefault(require("./RectBg"));
@@ -14,8 +14,6 @@ const ScoreLegend = (0, mobx_react_1.observer)(({ model }) => {
14
14
  const len = (0, util_1.measureText)(legend, 14);
15
15
  const padding = 25;
16
16
  const xpos = width - len - padding;
17
- return (react_1.default.createElement(react_1.default.Fragment, null,
18
- react_1.default.createElement(RectBg_1.default, { y: 0, x: xpos, width: len + 6, height: 16 }),
19
- react_1.default.createElement("text", { y: 13, x: xpos }, legend)));
17
+ return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(RectBg_1.default, { y: 0, x: xpos, width: len + 6, height: 16 }), (0, jsx_runtime_1.jsx)("text", { y: 13, x: xpos, children: legend })] }));
20
18
  });
21
19
  exports.default = ScoreLegend;
@@ -1,5 +1,4 @@
1
- import React from 'react';
2
- import { Source } from '../../util';
1
+ import type { Source } from '../../util';
3
2
  export default function SetColorDialog({ model, handleClose, }: {
4
3
  model: {
5
4
  sources?: Source[];
@@ -7,4 +6,4 @@ export default function SetColorDialog({ model, handleClose, }: {
7
6
  clearLayout: () => void;
8
7
  };
9
8
  handleClose: () => void;
10
- }): React.JSX.Element;
9
+ }): import("react/jsx-runtime").JSX.Element;
@@ -1,78 +1,39 @@
1
1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
4
  };
28
5
  Object.defineProperty(exports, "__esModule", { value: true });
29
6
  exports.default = SetColorDialog;
30
- const react_1 = __importStar(require("react"));
7
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
+ const react_1 = require("react");
9
+ const DraggableDialog_1 = __importDefault(require("@jbrowse/core/ui/DraggableDialog"));
10
+ const util_1 = require("@jbrowse/core/util");
31
11
  const material_1 = require("@mui/material");
32
12
  const mui_1 = require("tss-react/mui");
33
- const util_1 = require("@jbrowse/core/util");
34
- const clone_1 = __importDefault(require("clone"));
35
- // locals
36
- const DraggableDialog_1 = __importDefault(require("./DraggableDialog"));
37
13
  const SourcesGrid_1 = __importDefault(require("./SourcesGrid"));
38
14
  const useStyles = (0, mui_1.makeStyles)()({
39
15
  content: {
40
16
  minWidth: 800,
41
17
  },
18
+ float: {
19
+ float: 'right',
20
+ },
42
21
  });
43
22
  function SetColorDialog({ model, handleClose, }) {
44
23
  const { classes } = useStyles();
45
24
  const { sources } = model;
46
- const [currLayout, setCurrLayout] = (0, react_1.useState)((0, clone_1.default)(sources || []));
47
- const [showTips, setShowTips] = (0, util_1.useLocalStorage)('multiwiggle-showTips', true);
48
- return (react_1.default.createElement(DraggableDialog_1.default, { open: true, onClose: handleClose, maxWidth: "xl", title: 'Multi-wiggle color/arrangement editor' },
49
- react_1.default.createElement(material_1.DialogContent, { className: classes.content },
50
- react_1.default.createElement(material_1.Button, { variant: "contained", style: { float: 'right' }, onClick: () => {
51
- setShowTips(!showTips);
52
- } }, showTips ? 'Hide tips' : 'Show tips'),
53
- react_1.default.createElement("br", null),
54
- showTips ? (react_1.default.createElement(react_1.default.Fragment, null,
55
- "Helpful tips",
56
- react_1.default.createElement("ul", null,
57
- react_1.default.createElement("li", null, "You can select rows in the table with the checkboxes"),
58
- react_1.default.createElement("li", null, "Multi-select is enabled with shift-click and control-click"),
59
- react_1.default.createElement("li", null, "The \"Move selected items up/down\" can re-arrange subtracks"),
60
- react_1.default.createElement("li", null, "Sorting the data grid itself can also re-arrange subtracks"),
61
- react_1.default.createElement("li", null, "Changes are applied when you hit Submit"),
62
- react_1.default.createElement("li", null, "You can click and drag the dialog box to move it on the screen"),
63
- react_1.default.createElement("li", null, "Columns in the table can be hidden using a vertical '...' menu on the right side of each column")))) : null,
64
- react_1.default.createElement(SourcesGrid_1.default, { rows: currLayout, onChange: setCurrLayout, showTips: showTips })),
65
- react_1.default.createElement(material_1.DialogActions, null,
66
- react_1.default.createElement(material_1.Button, { variant: "contained", type: "submit", color: "inherit", onClick: () => {
67
- model.clearLayout();
68
- setCurrLayout(model.sources || []);
69
- } }, "Clear custom settings"),
70
- react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
71
- handleClose();
72
- setCurrLayout([...(model.sources || [])]);
73
- } }, "Cancel"),
74
- react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", onClick: () => {
75
- model.setLayout(currLayout);
76
- handleClose();
77
- } }, "Submit"))));
25
+ const [currLayout, setCurrLayout] = (0, react_1.useState)(structuredClone(sources || []));
26
+ const [showTips, setShowTips] = (0, util_1.useLocalStorage)('multiwiggle-showTips', false);
27
+ return ((0, jsx_runtime_1.jsxs)(DraggableDialog_1.default, { open: true, onClose: handleClose, maxWidth: "xl", title: "Multi-wiggle color/arrangement editor", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { className: classes.content, children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", className: classes.float, onClick: () => {
28
+ setShowTips(!showTips);
29
+ }, children: showTips ? 'Hide tips' : 'Show tips' }), (0, jsx_runtime_1.jsx)("br", {}), showTips ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: ["Helpful tips", (0, jsx_runtime_1.jsxs)("ul", { children: [(0, jsx_runtime_1.jsx)("li", { children: "You can select rows in the table with the checkboxes" }), (0, jsx_runtime_1.jsx)("li", { children: "Multi-select is enabled with shift-click and control-click" }), (0, jsx_runtime_1.jsx)("li", { children: "The \"Move selected items up/down\" can re-arrange subtracks" }), (0, jsx_runtime_1.jsx)("li", { children: "Sorting the data grid itself can also re-arrange subtracks" }), (0, jsx_runtime_1.jsx)("li", { children: "Changes are applied when you hit Submit" }), (0, jsx_runtime_1.jsx)("li", { children: "You can click and drag the dialog box to move it on the screen" }), (0, jsx_runtime_1.jsx)("li", { children: "Columns in the table can be hidden using a vertical '...' menu on the right side of each column" })] })] })) : null, (0, jsx_runtime_1.jsx)(SourcesGrid_1.default, { rows: currLayout, onChange: setCurrLayout, showTips: showTips })] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", type: "submit", color: "inherit", onClick: () => {
30
+ model.clearLayout();
31
+ setCurrLayout(model.sources || []);
32
+ }, children: "Clear custom settings" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
33
+ handleClose();
34
+ setCurrLayout([...(model.sources || [])]);
35
+ }, children: "Cancel" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", type: "submit", onClick: () => {
36
+ model.setLayout(currLayout);
37
+ handleClose();
38
+ }, children: "Submit" })] })] }));
78
39
  }
@@ -1,8 +1,7 @@
1
- import React from 'react';
2
- import { Source } from '../../util';
1
+ import type { Source } from '../../util';
3
2
  declare function SourcesGrid({ rows, onChange, showTips, }: {
4
3
  rows: Source[];
5
4
  onChange: (arg: Source[]) => void;
6
5
  showTips: boolean;
7
- }): React.JSX.Element;
6
+ }): import("react/jsx-runtime").JSX.Element;
8
7
  export default SourcesGrid;
@@ -15,31 +15,40 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
15
15
  }) : function(o, v) {
16
16
  o["default"] = v;
17
17
  });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
25
35
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
36
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
37
  };
28
38
  Object.defineProperty(exports, "__esModule", { value: true });
29
- const react_1 = __importStar(require("react"));
30
- const material_1 = require("@mui/material");
39
+ const jsx_runtime_1 = require("react/jsx-runtime");
40
+ const react_1 = require("react");
41
+ const ui_1 = require("@jbrowse/core/ui");
42
+ const ColorPicker_1 = __importStar(require("@jbrowse/core/ui/ColorPicker"));
31
43
  const util_1 = require("@jbrowse/core/util");
44
+ const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
45
+ const KeyboardArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardArrowUp"));
46
+ const KeyboardDoubleArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowDown"));
47
+ const KeyboardDoubleArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowUp"));
48
+ const material_1 = require("@mui/material");
32
49
  const x_data_grid_1 = require("@mui/x-data-grid");
33
50
  const mui_1 = require("tss-react/mui");
34
- const ColorPicker_1 = __importStar(require("@jbrowse/core/ui/ColorPicker"));
35
- const ui_1 = require("@jbrowse/core/ui");
36
- // locals
37
51
  const util_2 = require("./util");
38
- // icons
39
- const KeyboardDoubleArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowUp"));
40
- const KeyboardDoubleArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardDoubleArrowDown"));
41
- const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/KeyboardArrowDown"));
42
- const KeyboardArrowUp_1 = __importDefault(require("@mui/icons-material/KeyboardArrowUp"));
43
52
  const useStyles = (0, mui_1.makeStyles)()({
44
53
  cell: {
45
54
  whiteSpace: 'nowrap',
@@ -57,91 +66,65 @@ function SourcesGrid({ rows, onChange, showTips, }) {
57
66
  idx: 0,
58
67
  field: null,
59
68
  });
60
- return (react_1.default.createElement("div", null,
61
- react_1.default.createElement(material_1.Button, { disabled: !selected.length, onClick: event => {
62
- setAnchorEl(event.currentTarget);
63
- } }, "Change color of selected items"),
64
- react_1.default.createElement(material_1.Button, { onClick: () => {
65
- onChange((0, util_2.moveUp)([...rows], selected));
66
- }, disabled: !selected.length },
67
- react_1.default.createElement(KeyboardArrowUp_1.default, null),
68
- showTips ? 'Move selected items up' : null),
69
- react_1.default.createElement(material_1.Button, { onClick: () => {
70
- onChange((0, util_2.moveDown)([...rows], selected));
71
- }, disabled: !selected.length },
72
- react_1.default.createElement(KeyboardArrowDown_1.default, null),
73
- showTips ? 'Move selected items down' : null),
74
- react_1.default.createElement(material_1.Button, { onClick: () => {
75
- onChange((0, util_2.moveUp)([...rows], selected, rows.length));
76
- }, disabled: !selected.length },
77
- react_1.default.createElement(KeyboardDoubleArrowUp_1.default, null),
78
- showTips ? 'Move selected items to top' : null),
79
- react_1.default.createElement(material_1.Button, { onClick: () => {
80
- onChange((0, util_2.moveDown)([...rows], selected, rows.length));
81
- }, disabled: !selected.length },
82
- react_1.default.createElement(KeyboardDoubleArrowDown_1.default, null),
83
- showTips ? 'Move selected items to bottom' : null),
84
- react_1.default.createElement(ColorPicker_1.ColorPopover, { anchorEl: anchorEl, color: widgetColor, onChange: c => {
85
- setWidgetColor(c);
86
- selected.forEach(id => {
87
- const elt = rows.find(f => f.name === id);
88
- if (elt) {
89
- elt.color = c;
90
- }
91
- });
92
- onChange([...rows]);
93
- }, onClose: () => {
94
- setAnchorEl(null);
95
- } }),
96
- react_1.default.createElement("div", { style: { height: 400, width: '100%' } },
97
- react_1.default.createElement(x_data_grid_1.DataGrid, { getRowId: row => row.name, checkboxSelection: true, disableRowSelectionOnClick: true, onRowSelectionModelChange: arg => {
98
- setSelected(arg);
99
- }, rows: rows, rowHeight: 25, columnHeaderHeight: 33, columns: [
100
- {
101
- field: 'color',
102
- headerName: 'Color',
103
- renderCell: params => {
104
- const { value, id } = params;
105
- return (react_1.default.createElement(ColorPicker_1.default, { color: value || 'blue', onChange: c => {
69
+ return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { disabled: !selected.length, onClick: event => {
70
+ setAnchorEl(event.currentTarget);
71
+ }, children: "Change color of selected items" }), (0, jsx_runtime_1.jsxs)(material_1.Button, { onClick: () => {
72
+ onChange((0, util_2.moveUp)([...rows], selected));
73
+ }, disabled: !selected.length, children: [(0, jsx_runtime_1.jsx)(KeyboardArrowUp_1.default, {}), showTips ? 'Move selected items up' : null] }), (0, jsx_runtime_1.jsxs)(material_1.Button, { onClick: () => {
74
+ onChange((0, util_2.moveDown)([...rows], selected));
75
+ }, disabled: !selected.length, children: [(0, jsx_runtime_1.jsx)(KeyboardArrowDown_1.default, {}), showTips ? 'Move selected items down' : null] }), (0, jsx_runtime_1.jsxs)(material_1.Button, { onClick: () => {
76
+ onChange((0, util_2.moveUp)([...rows], selected, rows.length));
77
+ }, disabled: !selected.length, children: [(0, jsx_runtime_1.jsx)(KeyboardDoubleArrowUp_1.default, {}), showTips ? 'Move selected items to top' : null] }), (0, jsx_runtime_1.jsxs)(material_1.Button, { onClick: () => {
78
+ onChange((0, util_2.moveDown)([...rows], selected, rows.length));
79
+ }, disabled: !selected.length, children: [(0, jsx_runtime_1.jsx)(KeyboardDoubleArrowDown_1.default, {}), showTips ? 'Move selected items to bottom' : null] }), (0, jsx_runtime_1.jsx)(ColorPicker_1.ColorPopover, { anchorEl: anchorEl, color: widgetColor, onChange: c => {
80
+ setWidgetColor(c);
81
+ selected.forEach(id => {
82
+ const elt = rows.find(f => f.name === id);
83
+ if (elt) {
84
+ elt.color = c;
85
+ }
86
+ });
87
+ onChange([...rows]);
88
+ }, onClose: () => {
89
+ setAnchorEl(null);
90
+ } }), (0, jsx_runtime_1.jsx)("div", { style: { height: 400, width: '100%' }, children: (0, jsx_runtime_1.jsx)(x_data_grid_1.DataGrid, { getRowId: row => row.name, checkboxSelection: true, disableRowSelectionOnClick: true, onRowSelectionModelChange: arg => {
91
+ setSelected(arg);
92
+ }, rows: rows, rowHeight: 25, columnHeaderHeight: 33, columns: [
93
+ {
94
+ field: 'color',
95
+ headerName: 'Color',
96
+ renderCell: ({ value, id }) => ((0, jsx_runtime_1.jsx)(ColorPicker_1.default, { color: value || 'blue', onChange: c => {
106
97
  const elt = rows.find(f => f.name === id);
107
98
  if (elt) {
108
99
  elt.color = c;
109
100
  }
110
101
  onChange([...rows]);
111
- } }));
102
+ } })),
103
+ },
104
+ {
105
+ field: 'name',
106
+ headerName: 'Name',
107
+ width: (0, util_1.measureGridWidth)(rows.map(r => r.name)),
112
108
  },
113
- },
114
- {
115
- field: 'name',
116
- headerName: 'Name',
117
- width: (0, util_1.measureGridWidth)(rows.map(r => r.name)),
118
- },
119
- ...Object.keys(rest).map(val => ({
120
- field: val,
121
- renderCell: ({ value }) => (react_1.default.createElement("div", { className: classes.cell },
122
- react_1.default.createElement(ui_1.SanitizedHTML, { html: (0, util_1.getStr)(value) }))),
123
- width: (0, util_1.measureGridWidth)(rows.map(r => `${r[val]}`)),
124
- })),
125
- ], sortModel: [
126
- /* we control the sort as a controlled component using onSortModelChange */
127
- ], onSortModelChange: args => {
128
- const sort = args[0];
129
- // this idx%2 flip flops the sorting order, we could inspect args
130
- // for sort direction asc or desc but this is just a simplified
131
- // thing since we are controlling sort instead of the default data
132
- // grid sort anyways
133
- const idx = (currSort.idx + 1) % 2;
134
- const field = sort.field || currSort.field;
135
- setCurrSort({ idx, field });
136
- onChange(field
137
- ? [...rows].sort((a, b) => {
138
- const aa = (0, util_1.getStr)(a[field]);
139
- const bb = (0, util_1.getStr)(b[field]);
140
- return idx === 1
141
- ? aa.localeCompare(bb)
142
- : bb.localeCompare(aa);
143
- })
144
- : rows);
145
- } }))));
109
+ ...Object.keys(rest).map(val => ({
110
+ field: val,
111
+ renderCell: ({ value }) => ((0, jsx_runtime_1.jsx)("div", { className: classes.cell, children: (0, jsx_runtime_1.jsx)(ui_1.SanitizedHTML, { html: (0, util_1.getStr)(value) }) })),
112
+ width: (0, util_1.measureGridWidth)(rows.map(r => `${r[val]}`)),
113
+ })),
114
+ ], sortModel: [], onSortModelChange: args => {
115
+ const sort = args[0];
116
+ const idx = (currSort.idx + 1) % 2;
117
+ const field = sort.field || currSort.field;
118
+ setCurrSort({ idx, field });
119
+ onChange(field
120
+ ? [...rows].sort((a, b) => {
121
+ const aa = (0, util_1.getStr)(a[field]);
122
+ const bb = (0, util_1.getStr)(b[field]);
123
+ return idx === 1
124
+ ? aa.localeCompare(bb)
125
+ : bb.localeCompare(aa);
126
+ })
127
+ : rows);
128
+ } }) })] }));
146
129
  }
147
130
  exports.default = SourcesGrid;
@@ -1,7 +1,6 @@
1
- import React from 'react';
2
- import { Feature } from '@jbrowse/core/util';
3
- import { Source } from '../../util';
4
- import { TooltipContentsComponent } from '../../Tooltip';
1
+ import type { TooltipContentsComponent } from '../../Tooltip';
2
+ import type { Source } from '../../util';
3
+ import type { Feature } from '@jbrowse/core/util';
5
4
  type Coord = [number, number];
6
5
  declare const WiggleTooltip: (props: {
7
6
  model: {
@@ -14,6 +13,6 @@ declare const WiggleTooltip: (props: {
14
13
  clientMouseCoord: Coord;
15
14
  clientRect?: DOMRect;
16
15
  TooltipContents?: TooltipContentsComponent;
17
- }) => React.JSX.Element;
16
+ }) => import("react/jsx-runtime").JSX.Element;
18
17
  export default WiggleTooltip;
19
18
  export { default as Tooltip } from '../../Tooltip';
@@ -4,13 +4,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
6
  exports.Tooltip = void 0;
7
- const react_1 = __importDefault(require("react"));
7
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
+ const react_1 = require("react");
8
9
  const mobx_react_1 = require("mobx-react");
9
- // locals
10
- const util_1 = require("../../util");
11
10
  const Tooltip_1 = __importDefault(require("../../Tooltip"));
11
+ const util_1 = require("../../util");
12
12
  const en = (n) => n.toLocaleString('en-US');
13
- const TooltipContents = react_1.default.forwardRef(function TooltipContents2({ model, feature }, ref) {
13
+ const TooltipContents = (0, react_1.forwardRef)(function TooltipContents2({ model, feature }, ref) {
14
14
  const start = feature.get('start');
15
15
  const end = feature.get('end');
16
16
  const refName = feature.get('refName');
@@ -19,27 +19,12 @@ const TooltipContents = react_1.default.forwardRef(function TooltipContents2({ m
19
19
  const source = feature.get('source');
20
20
  const summary = feature.get('summary');
21
21
  const obj = Object.fromEntries(model.sources.map(ent => [ent.name, ent]));
22
- return (react_1.default.createElement("div", { ref: ref },
23
- [refName, coord].filter(f => !!f).join(':'),
24
- react_1.default.createElement("br", null),
25
- sources ? (react_1.default.createElement("table", null,
26
- react_1.default.createElement("thead", null,
27
- react_1.default.createElement("tr", null,
28
- react_1.default.createElement("th", null, "color"),
29
- react_1.default.createElement("th", null, "source"),
30
- react_1.default.createElement("th", null, "score"))),
31
- react_1.default.createElement("tbody", null, Object.entries(sources).map(([source, data]) => (react_1.default.createElement("tr", { key: source },
32
- react_1.default.createElement("td", { style: { background: obj[source].color } }, " "),
33
- react_1.default.createElement("td", null, source),
34
- react_1.default.createElement("td", null, (0, util_1.toP)(data.score)))))))) : (react_1.default.createElement("span", null,
35
- source,
36
- ' ',
37
- summary
38
- ? `min:${(0, util_1.toP)(feature.get('minScore'))} avg:${(0, util_1.toP)(feature.get('score'))} max:${(0, util_1.toP)(feature.get('maxScore'))}`
39
- : (0, util_1.toP)(feature.get('score'))))));
22
+ return ((0, jsx_runtime_1.jsxs)("div", { ref: ref, children: [[refName, coord].filter(f => !!f).join(':'), (0, jsx_runtime_1.jsx)("br", {}), sources ? ((0, jsx_runtime_1.jsxs)("table", { children: [(0, jsx_runtime_1.jsx)("thead", { children: (0, jsx_runtime_1.jsxs)("tr", { children: [(0, jsx_runtime_1.jsx)("th", { children: "color" }), (0, jsx_runtime_1.jsx)("th", { children: "source" }), (0, jsx_runtime_1.jsx)("th", { children: "score" })] }) }), (0, jsx_runtime_1.jsx)("tbody", { children: Object.entries(sources).map(([source, data]) => ((0, jsx_runtime_1.jsxs)("tr", { children: [(0, jsx_runtime_1.jsx)("td", { style: { background: obj[source].color }, children: " " }), (0, jsx_runtime_1.jsx)("td", { children: source }), (0, jsx_runtime_1.jsx)("td", { children: (0, util_1.toP)(data.score) })] }, source))) })] })) : ((0, jsx_runtime_1.jsxs)("span", { children: [source, ' ', summary
23
+ ? `min:${(0, util_1.toP)(feature.get('minScore'))} avg:${(0, util_1.toP)(feature.get('score'))} max:${(0, util_1.toP)(feature.get('maxScore'))}`
24
+ : (0, util_1.toP)(feature.get('score'))] }))] }));
40
25
  });
41
26
  const WiggleTooltip = (0, mobx_react_1.observer)((props) => {
42
- return react_1.default.createElement(Tooltip_1.default, { useClientY: true, TooltipContents: TooltipContents, ...props });
27
+ return (0, jsx_runtime_1.jsx)(Tooltip_1.default, { useClientY: true, TooltipContents: TooltipContents, ...props });
43
28
  });
44
29
  exports.default = WiggleTooltip;
45
30
  var Tooltip_2 = require("../../Tooltip");
@@ -1,6 +1,5 @@
1
- import React from 'react';
2
- import { WiggleDisplayModel } from '../model';
1
+ import type { WiggleDisplayModel } from '../model';
3
2
  declare const MultiLinearWiggleDisplayComponent: (props: {
4
3
  model: WiggleDisplayModel;
5
- }) => React.JSX.Element;
4
+ }) => import("react/jsx-runtime").JSX.Element;
6
5
  export default MultiLinearWiggleDisplayComponent;
@@ -3,14 +3,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- const react_1 = __importDefault(require("react"));
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
7
  const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
8
8
  const mobx_react_1 = require("mobx-react");
9
9
  const YScaleBars_1 = __importDefault(require("./YScaleBars"));
10
10
  const MultiLinearWiggleDisplayComponent = (0, mobx_react_1.observer)(function (props) {
11
11
  const { model } = props;
12
- return (react_1.default.createElement("div", null,
13
- react_1.default.createElement(plugin_linear_genome_view_1.BaseLinearDisplayComponent, { ...props }),
14
- react_1.default.createElement(YScaleBars_1.default, { model: model })));
12
+ return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(plugin_linear_genome_view_1.BaseLinearDisplayComponent, { ...props }), (0, jsx_runtime_1.jsx)(YScaleBars_1.default, { model: model })] }));
15
13
  });
16
14
  exports.default = MultiLinearWiggleDisplayComponent;
@@ -1,8 +1,7 @@
1
- import React from 'react';
2
- import { WiggleDisplayModel } from '../model';
1
+ import type { WiggleDisplayModel } from '../model';
3
2
  export declare const YScaleBars: (props: {
4
3
  model: WiggleDisplayModel;
5
4
  orientation?: string;
6
5
  exportSVG?: boolean;
7
- }) => React.JSX.Element | null;
6
+ }) => import("react/jsx-runtime").JSX.Element | null;
8
7
  export default YScaleBars;
@@ -4,45 +4,25 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
6
  exports.YScaleBars = void 0;
7
- const react_1 = __importDefault(require("react"));
7
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
8
  const util_1 = require("@jbrowse/core/util");
9
9
  const mobx_react_1 = require("mobx-react");
10
- const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
11
- const ColorLegend_1 = __importDefault(require("./ColorLegend"));
12
- const ScoreLegend_1 = __importDefault(require("./ScoreLegend"));
13
- const util_2 = require("./util");
10
+ const FullHeightScaleBar_1 = __importDefault(require("./FullHeightScaleBar"));
11
+ const IndividualScaleBars_1 = __importDefault(require("./IndividualScaleBars"));
14
12
  const Wrapper = (0, mobx_react_1.observer)(function ({ children, model, exportSVG, }) {
15
13
  const { height } = model;
16
- return exportSVG ? (children) : (react_1.default.createElement("svg", { style: {
14
+ return exportSVG ? (children) : ((0, jsx_runtime_1.jsx)("svg", { style: {
17
15
  position: 'absolute',
18
16
  top: 0,
19
17
  left: 0,
20
18
  pointerEvents: 'none',
21
19
  height,
22
20
  width: (0, util_1.getContainingView)(model).width,
23
- } }, children));
21
+ }, children: children }));
24
22
  });
25
23
  exports.YScaleBars = (0, mobx_react_1.observer)(function (props) {
26
24
  const { model, orientation, exportSVG } = props;
27
- const { stats, needsCustomLegend, needsFullHeightScalebar, rowHeightTooSmallForScalebar, rowHeight, sources, ticks, } = model;
28
- const svgFontSize = Math.min(rowHeight, 12);
29
- const canDisplayLabel = rowHeight > 11;
30
- const { width: viewWidth } = (0, util_1.getContainingView)(model);
31
- const minWidth = 20;
32
- const ready = stats && sources;
33
- if (!ready) {
34
- return null;
35
- }
36
- const labelWidth = Math.max(...sources
37
- .map(s => (0, util_1.measureText)(s.name, svgFontSize))
38
- .map(width => (canDisplayLabel ? width : minWidth)));
39
- return (react_1.default.createElement(Wrapper, { ...props }, needsFullHeightScalebar ? (react_1.default.createElement(react_1.default.Fragment, null,
40
- react_1.default.createElement("g", { transform: `translate(${!exportSVG ? (0, util_2.getOffset)(model) : 0},0)` },
41
- react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })),
42
- react_1.default.createElement("g", { transform: `translate(${viewWidth - labelWidth - 100},0)` },
43
- react_1.default.createElement(ColorLegend_1.default, { exportSVG: exportSVG, model: model, rowHeight: 12, labelWidth: labelWidth })))) : (react_1.default.createElement(react_1.default.Fragment, null,
44
- react_1.default.createElement(ColorLegend_1.default, { exportSVG: exportSVG, model: model, rowHeight: model.rowHeight, labelWidth: labelWidth }),
45
- rowHeightTooSmallForScalebar || needsCustomLegend ? (react_1.default.createElement(ScoreLegend_1.default, { ...props })) : (sources.map((_source, idx) => (react_1.default.createElement("g", { transform: `translate(0 ${rowHeight * idx})`, key: `${JSON.stringify(ticks)}-${idx}` },
46
- react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })))))))));
25
+ const { stats, needsFullHeightScalebar, sources } = model;
26
+ return stats && sources ? ((0, jsx_runtime_1.jsx)(Wrapper, { ...props, children: needsFullHeightScalebar ? ((0, jsx_runtime_1.jsx)(FullHeightScaleBar_1.default, { model: model, orientation: orientation, exportSVG: exportSVG })) : ((0, jsx_runtime_1.jsx)(IndividualScaleBars_1.default, { model: model, orientation: orientation, exportSVG: exportSVG })) })) : null;
47
27
  });
48
28
  exports.default = exports.YScaleBars;
@@ -1,4 +1,4 @@
1
- import { WiggleDisplayModel } from '../model';
1
+ import type { WiggleDisplayModel } from '../model';
2
2
  export declare function moveUp(arr: {
3
3
  name: string;
4
4
  }[], sel: string[], by?: number): {
@@ -3,8 +3,8 @@ Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.moveUp = moveUp;
4
4
  exports.moveDown = moveDown;
5
5
  exports.getOffset = getOffset;
6
- const util_1 = require("@jbrowse/core/util");
7
6
  const configuration_1 = require("@jbrowse/core/configuration");
7
+ const util_1 = require("@jbrowse/core/util");
8
8
  function moveUp(arr, sel, by = 1) {
9
9
  const idxs = sel
10
10
  .map(l => arr.findIndex(v => v.name === l))
@@ -1,16 +1,10 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
1
+ import type PluginManager from '@jbrowse/core/PluginManager';
2
2
  export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
3
- /**
4
- * #slot
5
- */
6
3
  defaultRendering: {
7
4
  type: string;
8
5
  model: import("mobx-state-tree").ISimpleType<string>;
9
6
  defaultValue: string;
10
7
  };
11
- /**
12
- * #slot
13
- */
14
8
  renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
15
9
  MultiXYPlotRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
16
10
  MultiDensityRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
@@ -18,9 +12,6 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
18
12
  MultiLineRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
19
13
  MultiRowLineRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
20
14
  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
21
- /**
22
- * #slot
23
- */
24
15
  height: {
25
16
  type: string;
26
17
  defaultValue: number;