@jbrowse/plugin-wiggle 2.17.0 → 3.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +4 -3
- package/dist/BigWigAdapter/BigWigAdapter.js +3 -8
- package/dist/BigWigAdapter/configSchema.d.ts +0 -9
- package/dist/BigWigAdapter/configSchema.js +1 -13
- package/dist/BigWigAdapter/index.d.ts +1 -1
- package/dist/BigWigAdapter/index.js +17 -7
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +14 -49
- package/dist/CreateMultiWiggleExtension/index.d.ts +1 -1
- package/dist/CreateMultiWiggleExtension/index.js +43 -33
- package/dist/DensityRenderer/DensityRenderer.d.ts +2 -1
- package/dist/DensityRenderer/DensityRenderer.js +35 -2
- package/dist/DensityRenderer/configSchema.js +1 -7
- package/dist/DensityRenderer/index.d.ts +1 -1
- package/dist/DensityRenderer/index.js +1 -1
- package/dist/GuessAdapter/index.d.ts +2 -0
- package/dist/GuessAdapter/index.js +25 -0
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
- package/dist/LinePlotRenderer/LinePlotRenderer.js +35 -2
- package/dist/LinePlotRenderer/configSchema.d.ts +0 -3
- package/dist/LinePlotRenderer/configSchema.js +1 -10
- package/dist/LinePlotRenderer/index.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +23 -59
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
- package/dist/LinearWiggleDisplay/components/Tooltip.js +5 -18
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +11 -14
- package/dist/LinearWiggleDisplay/configSchema.d.ts +1 -12
- package/dist/LinearWiggleDisplay/configSchema.js +0 -15
- package/dist/LinearWiggleDisplay/index.d.ts +1 -1
- package/dist/LinearWiggleDisplay/index.js +18 -8
- package/dist/LinearWiggleDisplay/model.d.ts +44 -79
- package/dist/LinearWiggleDisplay/model.js +39 -71
- package/dist/LinearWiggleDisplay/renderSvg.d.ts +3 -4
- package/dist/LinearWiggleDisplay/renderSvg.js +2 -6
- package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +40 -6
- package/dist/MultiDensityRenderer/configSchema.js +1 -7
- package/dist/MultiDensityRenderer/index.d.ts +1 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
- package/dist/MultiLineRenderer/MultiLineRenderer.js +35 -3
- package/dist/MultiLineRenderer/configSchema.d.ts +0 -6
- package/dist/MultiLineRenderer/configSchema.js +1 -13
- package/dist/MultiLineRenderer/index.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
- package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
- package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +17 -0
- package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
- package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +15 -0
- package/dist/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
- package/dist/MultiLinearWiggleDisplay/components/LegendItem.js +19 -0
- package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
- package/dist/MultiLinearWiggleDisplay/components/RectBg.js +2 -5
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +2 -4
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +21 -60
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +80 -97
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +7 -27
- package/dist/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/util.js +1 -1
- package/dist/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
- package/dist/MultiLinearWiggleDisplay/configSchema.js +1 -19
- package/dist/MultiLinearWiggleDisplay/index.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/index.js +18 -8
- package/dist/MultiLinearWiggleDisplay/model.d.ts +27 -146
- package/dist/MultiLinearWiggleDisplay/model.js +44 -128
- package/dist/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
- package/dist/MultiLinearWiggleDisplay/renderSvg.js +2 -5
- package/dist/MultiLinearWiggleDisplay/util.d.ts +1 -0
- package/dist/MultiLinearWiggleDisplay/util.js +10 -0
- package/dist/MultiQuantitativeTrack/configSchema.d.ts +1 -1
- package/dist/MultiQuantitativeTrack/configSchema.js +1 -7
- package/dist/MultiQuantitativeTrack/index.d.ts +1 -1
- package/dist/MultiQuantitativeTrack/index.js +1 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +35 -3
- package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -6
- package/dist/MultiRowLineRenderer/configSchema.js +2 -14
- package/dist/MultiRowLineRenderer/index.d.ts +1 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +35 -3
- package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/MultiRowXYPlotRenderer/configSchema.js +2 -20
- package/dist/MultiRowXYPlotRenderer/index.d.ts +1 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +8 -13
- package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -6
- package/dist/MultiWiggleAdapter/configSchema.js +1 -10
- package/dist/MultiWiggleAdapter/index.d.ts +1 -1
- package/dist/MultiWiggleAdapter/index.js +18 -8
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -104
- package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
- package/dist/MultiWiggleAddTrackWorkflow/index.js +18 -9
- package/dist/MultiWiggleRendering.d.ts +4 -5
- package/dist/MultiWiggleRendering.js +6 -29
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +36 -4
- package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/MultiXYPlotRenderer/configSchema.js +1 -19
- package/dist/MultiXYPlotRenderer/index.d.ts +1 -1
- package/dist/QuantitativeTrack/configSchema.d.ts +1 -1
- package/dist/QuantitativeTrack/configSchema.js +1 -7
- package/dist/QuantitativeTrack/index.d.ts +1 -1
- package/dist/QuantitativeTrack/index.js +1 -1
- package/dist/Tooltip.d.ts +2 -3
- package/dist/Tooltip.js +7 -34
- package/dist/WiggleBaseRenderer.d.ts +8 -11
- package/dist/WiggleBaseRenderer.js +0 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
- package/dist/WiggleRPC/MultiWiggleGetSources.js +2 -29
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
- package/dist/WiggleRendering.d.ts +3 -4
- package/dist/WiggleRendering.js +5 -30
- package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
- package/dist/XYPlotRenderer/XYPlotRenderer.js +37 -6
- package/dist/XYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/XYPlotRenderer/configSchema.js +2 -20
- package/dist/XYPlotRenderer/index.d.ts +1 -1
- package/dist/configSchema.d.ts +0 -18
- package/dist/configSchema.js +1 -23
- package/dist/drawDensity.d.ts +3 -3
- package/dist/drawDensity.js +0 -4
- package/dist/drawLine.d.ts +3 -3
- package/dist/drawLine.js +0 -5
- package/dist/drawXY.d.ts +4 -3
- package/dist/drawXY.js +28 -12
- package/dist/getMultiWiggleSourcesAutorun.d.ts +2 -2
- package/dist/getMultiWiggleSourcesAutorun.js +10 -7
- package/dist/getQuantitativeStats.d.ts +3 -3
- package/dist/getQuantitativeStats.js +2 -10
- package/dist/getQuantitativeStatsAutorun.d.ts +3 -3
- package/dist/getQuantitativeStatsAutorun.js +18 -20
- package/dist/index.d.ts +7 -7
- package/dist/index.js +40 -58
- package/dist/shared/SetMinMaxDialog.d.ts +1 -2
- package/dist/shared/SetMinMaxDialog.js +12 -42
- package/dist/shared/SharedWiggleConfigSchema.d.ts +0 -26
- package/dist/shared/SharedWiggleConfigSchema.js +1 -30
- package/dist/shared/SharedWiggleMixin.d.ts +26 -231
- package/dist/shared/SharedWiggleMixin.js +24 -184
- package/dist/shared/YScaleBar.d.ts +1 -2
- package/dist/shared/YScaleBar.js +2 -5
- package/dist/util.d.ts +0 -28
- package/dist/util.js +1 -45
- package/esm/BigWigAdapter/BigWigAdapter.d.ts +4 -3
- package/esm/BigWigAdapter/BigWigAdapter.js +5 -10
- package/esm/BigWigAdapter/configSchema.d.ts +0 -9
- package/esm/BigWigAdapter/configSchema.js +1 -13
- package/esm/BigWigAdapter/index.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +14 -26
- package/esm/CreateMultiWiggleExtension/index.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/index.js +26 -26
- package/esm/DensityRenderer/DensityRenderer.d.ts +2 -1
- package/esm/DensityRenderer/DensityRenderer.js +1 -1
- package/esm/DensityRenderer/configSchema.js +1 -7
- package/esm/DensityRenderer/index.d.ts +1 -1
- package/esm/DensityRenderer/index.js +1 -1
- package/esm/GuessAdapter/index.d.ts +2 -0
- package/esm/GuessAdapter/index.js +22 -0
- package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
- package/esm/LinePlotRenderer/LinePlotRenderer.js +1 -1
- package/esm/LinePlotRenderer/configSchema.d.ts +0 -3
- package/esm/LinePlotRenderer/configSchema.js +1 -10
- package/esm/LinePlotRenderer/index.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js +23 -36
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
- package/esm/LinearWiggleDisplay/components/Tooltip.js +5 -18
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +12 -15
- package/esm/LinearWiggleDisplay/configSchema.d.ts +1 -12
- package/esm/LinearWiggleDisplay/configSchema.js +0 -15
- package/esm/LinearWiggleDisplay/index.d.ts +1 -1
- package/esm/LinearWiggleDisplay/index.js +1 -1
- package/esm/LinearWiggleDisplay/model.d.ts +44 -79
- package/esm/LinearWiggleDisplay/model.js +24 -66
- package/esm/LinearWiggleDisplay/renderSvg.d.ts +3 -4
- package/esm/LinearWiggleDisplay/renderSvg.js +2 -6
- package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +5 -4
- package/esm/MultiDensityRenderer/configSchema.js +1 -7
- package/esm/MultiDensityRenderer/index.d.ts +1 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
- package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
- package/esm/MultiLineRenderer/configSchema.d.ts +0 -6
- package/esm/MultiLineRenderer/configSchema.js +1 -13
- package/esm/MultiLineRenderer/index.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
- package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
- package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +12 -0
- package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
- package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +10 -0
- package/esm/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
- package/esm/MultiLinearWiggleDisplay/components/LegendItem.js +14 -0
- package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
- package/esm/MultiLinearWiggleDisplay/components/RectBg.js +2 -2
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +3 -5
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +22 -38
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +64 -91
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +8 -28
- package/esm/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/util.js +1 -1
- package/esm/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
- package/esm/MultiLinearWiggleDisplay/configSchema.js +1 -19
- package/esm/MultiLinearWiggleDisplay/index.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/index.js +1 -1
- package/esm/MultiLinearWiggleDisplay/model.d.ts +27 -146
- package/esm/MultiLinearWiggleDisplay/model.js +27 -121
- package/esm/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
- package/esm/MultiLinearWiggleDisplay/renderSvg.js +2 -5
- package/esm/MultiLinearWiggleDisplay/util.d.ts +1 -0
- package/esm/MultiLinearWiggleDisplay/util.js +7 -0
- package/esm/MultiQuantitativeTrack/configSchema.d.ts +1 -1
- package/esm/MultiQuantitativeTrack/configSchema.js +1 -7
- package/esm/MultiQuantitativeTrack/index.d.ts +1 -1
- package/esm/MultiQuantitativeTrack/index.js +1 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/esm/MultiRowLineRenderer/configSchema.d.ts +0 -6
- package/esm/MultiRowLineRenderer/configSchema.js +2 -14
- package/esm/MultiRowLineRenderer/index.d.ts +1 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/MultiRowXYPlotRenderer/configSchema.js +2 -20
- package/esm/MultiRowXYPlotRenderer/index.d.ts +1 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +9 -14
- package/esm/MultiWiggleAdapter/configSchema.d.ts +0 -6
- package/esm/MultiWiggleAdapter/configSchema.js +1 -10
- package/esm/MultiWiggleAdapter/index.d.ts +1 -1
- package/esm/MultiWiggleAdapter/index.js +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -80
- package/esm/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/index.js +1 -2
- package/esm/MultiWiggleRendering.d.ts +4 -5
- package/esm/MultiWiggleRendering.js +6 -6
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -3
- package/esm/MultiXYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/MultiXYPlotRenderer/configSchema.js +1 -19
- package/esm/MultiXYPlotRenderer/index.d.ts +1 -1
- package/esm/QuantitativeTrack/configSchema.d.ts +1 -1
- package/esm/QuantitativeTrack/configSchema.js +1 -7
- package/esm/QuantitativeTrack/index.d.ts +1 -1
- package/esm/QuantitativeTrack/index.js +1 -1
- package/esm/Tooltip.d.ts +2 -3
- package/esm/Tooltip.js +7 -11
- package/esm/WiggleBaseRenderer.d.ts +8 -11
- package/esm/WiggleBaseRenderer.js +0 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
- package/esm/WiggleRPC/MultiWiggleGetSources.js +2 -29
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
- package/esm/WiggleRendering.d.ts +3 -4
- package/esm/WiggleRendering.js +5 -7
- package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
- package/esm/XYPlotRenderer/XYPlotRenderer.js +3 -5
- package/esm/XYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/XYPlotRenderer/configSchema.js +2 -20
- package/esm/XYPlotRenderer/index.d.ts +1 -1
- package/esm/configSchema.d.ts +0 -18
- package/esm/configSchema.js +1 -23
- package/esm/drawDensity.d.ts +3 -3
- package/esm/drawDensity.js +1 -5
- package/esm/drawLine.d.ts +3 -3
- package/esm/drawLine.js +1 -6
- package/esm/drawXY.d.ts +4 -3
- package/esm/drawXY.js +29 -13
- package/esm/getMultiWiggleSourcesAutorun.d.ts +2 -2
- package/esm/getMultiWiggleSourcesAutorun.js +9 -6
- package/esm/getQuantitativeStats.d.ts +3 -3
- package/esm/getQuantitativeStats.js +3 -11
- package/esm/getQuantitativeStatsAutorun.d.ts +3 -3
- package/esm/getQuantitativeStatsAutorun.js +18 -20
- package/esm/index.d.ts +7 -7
- package/esm/index.js +14 -42
- package/esm/shared/SetMinMaxDialog.d.ts +1 -2
- package/esm/shared/SetMinMaxDialog.js +12 -19
- package/esm/shared/SharedWiggleConfigSchema.d.ts +0 -26
- package/esm/shared/SharedWiggleConfigSchema.js +1 -30
- package/esm/shared/SharedWiggleMixin.d.ts +26 -231
- package/esm/shared/SharedWiggleMixin.js +8 -178
- package/esm/shared/YScaleBar.d.ts +1 -2
- package/esm/shared/YScaleBar.js +2 -2
- package/esm/util.d.ts +0 -28
- package/esm/util.js +1 -45
- package/package.json +3 -6
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -66
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -38
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return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(RectBg_1.default, { y: 0, x: xpos, width: len + 6, height: 16 }), (0, jsx_runtime_1.jsx)("text", { y: 13, x: xpos, children: legend })] }));
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} }, "Submit"))));
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const [currLayout, setCurrLayout] = (0, react_1.useState)(structuredClone(sources || []));
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const [showTips, setShowTips] = (0, util_1.useLocalStorage)('multiwiggle-showTips', false);
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return ((0, jsx_runtime_1.jsxs)(DraggableDialog_1.default, { open: true, onClose: handleClose, maxWidth: "xl", title: "Multi-wiggle color/arrangement editor", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { className: classes.content, children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", className: classes.float, onClick: () => {
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}, children: showTips ? 'Hide tips' : 'Show tips' }), (0, jsx_runtime_1.jsx)("br", {}), showTips ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: ["Helpful tips", (0, jsx_runtime_1.jsxs)("ul", { children: [(0, jsx_runtime_1.jsx)("li", { children: "You can select rows in the table with the checkboxes" }), (0, jsx_runtime_1.jsx)("li", { children: "Multi-select is enabled with shift-click and control-click" }), (0, jsx_runtime_1.jsx)("li", { children: "The \"Move selected items up/down\" can re-arrange subtracks" }), (0, jsx_runtime_1.jsx)("li", { children: "Sorting the data grid itself can also re-arrange subtracks" }), (0, jsx_runtime_1.jsx)("li", { children: "Changes are applied when you hit Submit" }), (0, jsx_runtime_1.jsx)("li", { children: "You can click and drag the dialog box to move it on the screen" }), (0, jsx_runtime_1.jsx)("li", { children: "Columns in the table can be hidden using a vertical '...' menu on the right side of each column" })] })] })) : null, (0, jsx_runtime_1.jsx)(SourcesGrid_1.default, { rows: currLayout, onChange: setCurrLayout, showTips: showTips })] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", type: "submit", color: "inherit", onClick: () => {
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handleClose();
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setCurrLayout([...(model.sources || [])]);
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}, children: "Cancel" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", type: "submit", onClick: () => {
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handleClose();
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}, children: "Submit" })] })] }));
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declare function SourcesGrid({ rows, onChange, showTips, }: {
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}, disabled: !selected.length, children: [(0, jsx_runtime_1.jsx)(KeyboardArrowUp_1.default, {}), showTips ? 'Move selected items up' : null] }), (0, jsx_runtime_1.jsxs)(material_1.Button, { onClick: () => {
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onChange((0, util_2.moveDown)([...rows], selected));
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}, disabled: !selected.length, children: [(0, jsx_runtime_1.jsx)(KeyboardArrowDown_1.default, {}), showTips ? 'Move selected items down' : null] }), (0, jsx_runtime_1.jsxs)(material_1.Button, { onClick: () => {
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}, disabled: !selected.length, children: [(0, jsx_runtime_1.jsx)(KeyboardDoubleArrowUp_1.default, {}), showTips ? 'Move selected items to top' : null] }), (0, jsx_runtime_1.jsxs)(material_1.Button, { onClick: () => {
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}, disabled: !selected.length, children: [(0, jsx_runtime_1.jsx)(KeyboardDoubleArrowDown_1.default, {}), showTips ? 'Move selected items to bottom' : null] }), (0, jsx_runtime_1.jsx)(ColorPicker_1.ColorPopover, { anchorEl: anchorEl, color: widgetColor, onChange: c => {
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selected.forEach(id => {
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const elt = rows.find(f => f.name === id);
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}
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});
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onChange([...rows]);
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}, onClose: () => {
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setAnchorEl(null);
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} }), (0, jsx_runtime_1.jsx)("div", { style: { height: 400, width: '100%' }, children: (0, jsx_runtime_1.jsx)(x_data_grid_1.DataGrid, { getRowId: row => row.name, checkboxSelection: true, disableRowSelectionOnClick: true, onRowSelectionModelChange: arg => {
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{
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: rows);
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renderCell: ({ value }) => ((0, jsx_runtime_1.jsx)("div", { className: classes.cell, children: (0, jsx_runtime_1.jsx)(ui_1.SanitizedHTML, { html: (0, util_1.getStr)(value) }) })),
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|
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})),
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], sortModel: [], onSortModelChange: args => {
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? [...rows].sort((a, b) => {
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return idx === 1
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? aa.localeCompare(bb)
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: bb.localeCompare(aa);
|
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})
|
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: rows);
|
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} }) })] }));
|
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exports.default = SourcesGrid;
|
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@@ -1,7 +1,6 @@
|
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import
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import {
|
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import {
|
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import { TooltipContentsComponent } from '../../Tooltip';
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+
import type { TooltipContentsComponent } from '../../Tooltip';
|
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import type { Source } from '../../util';
|
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import type { Feature } from '@jbrowse/core/util';
|
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type Coord = [number, number];
|
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declare const WiggleTooltip: (props: {
|
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model: {
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@@ -14,6 +13,6 @@ declare const WiggleTooltip: (props: {
|
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clientMouseCoord: Coord;
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clientRect?: DOMRect;
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TooltipContents?: TooltipContentsComponent;
|
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}) =>
|
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+
}) => import("react/jsx-runtime").JSX.Element;
|
|
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|
export default WiggleTooltip;
|
|
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export { default as Tooltip } from '../../Tooltip';
|
|
@@ -4,13 +4,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
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4
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|
};
|
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|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
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|
exports.Tooltip = void 0;
|
|
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|
-
const
|
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|
+
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
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|
+
const react_1 = require("react");
|
|
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9
|
const mobx_react_1 = require("mobx-react");
|
|
9
|
-
// locals
|
|
10
|
-
const util_1 = require("../../util");
|
|
11
10
|
const Tooltip_1 = __importDefault(require("../../Tooltip"));
|
|
11
|
+
const util_1 = require("../../util");
|
|
12
12
|
const en = (n) => n.toLocaleString('en-US');
|
|
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|
-
const TooltipContents = react_1.
|
|
13
|
+
const TooltipContents = (0, react_1.forwardRef)(function TooltipContents2({ model, feature }, ref) {
|
|
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|
const start = feature.get('start');
|
|
15
15
|
const end = feature.get('end');
|
|
16
16
|
const refName = feature.get('refName');
|
|
@@ -19,27 +19,12 @@ const TooltipContents = react_1.default.forwardRef(function TooltipContents2({ m
|
|
|
19
19
|
const source = feature.get('source');
|
|
20
20
|
const summary = feature.get('summary');
|
|
21
21
|
const obj = Object.fromEntries(model.sources.map(ent => [ent.name, ent]));
|
|
22
|
-
return (
|
|
23
|
-
|
|
24
|
-
|
|
25
|
-
sources ? (react_1.default.createElement("table", null,
|
|
26
|
-
react_1.default.createElement("thead", null,
|
|
27
|
-
react_1.default.createElement("tr", null,
|
|
28
|
-
react_1.default.createElement("th", null, "color"),
|
|
29
|
-
react_1.default.createElement("th", null, "source"),
|
|
30
|
-
react_1.default.createElement("th", null, "score"))),
|
|
31
|
-
react_1.default.createElement("tbody", null, Object.entries(sources).map(([source, data]) => (react_1.default.createElement("tr", { key: source },
|
|
32
|
-
react_1.default.createElement("td", { style: { background: obj[source].color } }, " "),
|
|
33
|
-
react_1.default.createElement("td", null, source),
|
|
34
|
-
react_1.default.createElement("td", null, (0, util_1.toP)(data.score)))))))) : (react_1.default.createElement("span", null,
|
|
35
|
-
source,
|
|
36
|
-
' ',
|
|
37
|
-
summary
|
|
38
|
-
? `min:${(0, util_1.toP)(feature.get('minScore'))} avg:${(0, util_1.toP)(feature.get('score'))} max:${(0, util_1.toP)(feature.get('maxScore'))}`
|
|
39
|
-
: (0, util_1.toP)(feature.get('score'))))));
|
|
22
|
+
return ((0, jsx_runtime_1.jsxs)("div", { ref: ref, children: [[refName, coord].filter(f => !!f).join(':'), (0, jsx_runtime_1.jsx)("br", {}), sources ? ((0, jsx_runtime_1.jsxs)("table", { children: [(0, jsx_runtime_1.jsx)("thead", { children: (0, jsx_runtime_1.jsxs)("tr", { children: [(0, jsx_runtime_1.jsx)("th", { children: "color" }), (0, jsx_runtime_1.jsx)("th", { children: "source" }), (0, jsx_runtime_1.jsx)("th", { children: "score" })] }) }), (0, jsx_runtime_1.jsx)("tbody", { children: Object.entries(sources).map(([source, data]) => ((0, jsx_runtime_1.jsxs)("tr", { children: [(0, jsx_runtime_1.jsx)("td", { style: { background: obj[source].color }, children: " " }), (0, jsx_runtime_1.jsx)("td", { children: source }), (0, jsx_runtime_1.jsx)("td", { children: (0, util_1.toP)(data.score) })] }, source))) })] })) : ((0, jsx_runtime_1.jsxs)("span", { children: [source, ' ', summary
|
|
23
|
+
? `min:${(0, util_1.toP)(feature.get('minScore'))} avg:${(0, util_1.toP)(feature.get('score'))} max:${(0, util_1.toP)(feature.get('maxScore'))}`
|
|
24
|
+
: (0, util_1.toP)(feature.get('score'))] }))] }));
|
|
40
25
|
});
|
|
41
26
|
const WiggleTooltip = (0, mobx_react_1.observer)((props) => {
|
|
42
|
-
return
|
|
27
|
+
return (0, jsx_runtime_1.jsx)(Tooltip_1.default, { useClientY: true, TooltipContents: TooltipContents, ...props });
|
|
43
28
|
});
|
|
44
29
|
exports.default = WiggleTooltip;
|
|
45
30
|
var Tooltip_2 = require("../../Tooltip");
|
|
@@ -1,6 +1,5 @@
|
|
|
1
|
-
import
|
|
2
|
-
import { WiggleDisplayModel } from '../model';
|
|
1
|
+
import type { WiggleDisplayModel } from '../model';
|
|
3
2
|
declare const MultiLinearWiggleDisplayComponent: (props: {
|
|
4
3
|
model: WiggleDisplayModel;
|
|
5
|
-
}) =>
|
|
4
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
6
5
|
export default MultiLinearWiggleDisplayComponent;
|
|
@@ -3,14 +3,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
3
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
const
|
|
6
|
+
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
7
7
|
const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
|
|
8
8
|
const mobx_react_1 = require("mobx-react");
|
|
9
9
|
const YScaleBars_1 = __importDefault(require("./YScaleBars"));
|
|
10
10
|
const MultiLinearWiggleDisplayComponent = (0, mobx_react_1.observer)(function (props) {
|
|
11
11
|
const { model } = props;
|
|
12
|
-
return (
|
|
13
|
-
react_1.default.createElement(plugin_linear_genome_view_1.BaseLinearDisplayComponent, { ...props }),
|
|
14
|
-
react_1.default.createElement(YScaleBars_1.default, { model: model })));
|
|
12
|
+
return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(plugin_linear_genome_view_1.BaseLinearDisplayComponent, { ...props }), (0, jsx_runtime_1.jsx)(YScaleBars_1.default, { model: model })] }));
|
|
15
13
|
});
|
|
16
14
|
exports.default = MultiLinearWiggleDisplayComponent;
|
|
@@ -1,8 +1,7 @@
|
|
|
1
|
-
import
|
|
2
|
-
import { WiggleDisplayModel } from '../model';
|
|
1
|
+
import type { WiggleDisplayModel } from '../model';
|
|
3
2
|
export declare const YScaleBars: (props: {
|
|
4
3
|
model: WiggleDisplayModel;
|
|
5
4
|
orientation?: string;
|
|
6
5
|
exportSVG?: boolean;
|
|
7
|
-
}) =>
|
|
6
|
+
}) => import("react/jsx-runtime").JSX.Element | null;
|
|
8
7
|
export default YScaleBars;
|
|
@@ -4,45 +4,25 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
6
|
exports.YScaleBars = void 0;
|
|
7
|
-
const
|
|
7
|
+
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
8
8
|
const util_1 = require("@jbrowse/core/util");
|
|
9
9
|
const mobx_react_1 = require("mobx-react");
|
|
10
|
-
const
|
|
11
|
-
const
|
|
12
|
-
const ScoreLegend_1 = __importDefault(require("./ScoreLegend"));
|
|
13
|
-
const util_2 = require("./util");
|
|
10
|
+
const FullHeightScaleBar_1 = __importDefault(require("./FullHeightScaleBar"));
|
|
11
|
+
const IndividualScaleBars_1 = __importDefault(require("./IndividualScaleBars"));
|
|
14
12
|
const Wrapper = (0, mobx_react_1.observer)(function ({ children, model, exportSVG, }) {
|
|
15
13
|
const { height } = model;
|
|
16
|
-
return exportSVG ? (children) : (
|
|
14
|
+
return exportSVG ? (children) : ((0, jsx_runtime_1.jsx)("svg", { style: {
|
|
17
15
|
position: 'absolute',
|
|
18
16
|
top: 0,
|
|
19
17
|
left: 0,
|
|
20
18
|
pointerEvents: 'none',
|
|
21
19
|
height,
|
|
22
20
|
width: (0, util_1.getContainingView)(model).width,
|
|
23
|
-
}
|
|
21
|
+
}, children: children }));
|
|
24
22
|
});
|
|
25
23
|
exports.YScaleBars = (0, mobx_react_1.observer)(function (props) {
|
|
26
24
|
const { model, orientation, exportSVG } = props;
|
|
27
|
-
const { stats,
|
|
28
|
-
|
|
29
|
-
const canDisplayLabel = rowHeight > 11;
|
|
30
|
-
const { width: viewWidth } = (0, util_1.getContainingView)(model);
|
|
31
|
-
const minWidth = 20;
|
|
32
|
-
const ready = stats && sources;
|
|
33
|
-
if (!ready) {
|
|
34
|
-
return null;
|
|
35
|
-
}
|
|
36
|
-
const labelWidth = Math.max(...sources
|
|
37
|
-
.map(s => (0, util_1.measureText)(s.name, svgFontSize))
|
|
38
|
-
.map(width => (canDisplayLabel ? width : minWidth)));
|
|
39
|
-
return (react_1.default.createElement(Wrapper, { ...props }, needsFullHeightScalebar ? (react_1.default.createElement(react_1.default.Fragment, null,
|
|
40
|
-
react_1.default.createElement("g", { transform: `translate(${!exportSVG ? (0, util_2.getOffset)(model) : 0},0)` },
|
|
41
|
-
react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })),
|
|
42
|
-
react_1.default.createElement("g", { transform: `translate(${viewWidth - labelWidth - 100},0)` },
|
|
43
|
-
react_1.default.createElement(ColorLegend_1.default, { exportSVG: exportSVG, model: model, rowHeight: 12, labelWidth: labelWidth })))) : (react_1.default.createElement(react_1.default.Fragment, null,
|
|
44
|
-
react_1.default.createElement(ColorLegend_1.default, { exportSVG: exportSVG, model: model, rowHeight: model.rowHeight, labelWidth: labelWidth }),
|
|
45
|
-
rowHeightTooSmallForScalebar || needsCustomLegend ? (react_1.default.createElement(ScoreLegend_1.default, { ...props })) : (sources.map((_source, idx) => (react_1.default.createElement("g", { transform: `translate(0 ${rowHeight * idx})`, key: `${JSON.stringify(ticks)}-${idx}` },
|
|
46
|
-
react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })))))))));
|
|
25
|
+
const { stats, needsFullHeightScalebar, sources } = model;
|
|
26
|
+
return stats && sources ? ((0, jsx_runtime_1.jsx)(Wrapper, { ...props, children: needsFullHeightScalebar ? ((0, jsx_runtime_1.jsx)(FullHeightScaleBar_1.default, { model: model, orientation: orientation, exportSVG: exportSVG })) : ((0, jsx_runtime_1.jsx)(IndividualScaleBars_1.default, { model: model, orientation: orientation, exportSVG: exportSVG })) })) : null;
|
|
47
27
|
});
|
|
48
28
|
exports.default = exports.YScaleBars;
|
|
@@ -3,8 +3,8 @@ Object.defineProperty(exports, "__esModule", { value: true });
|
|
|
3
3
|
exports.moveUp = moveUp;
|
|
4
4
|
exports.moveDown = moveDown;
|
|
5
5
|
exports.getOffset = getOffset;
|
|
6
|
-
const util_1 = require("@jbrowse/core/util");
|
|
7
6
|
const configuration_1 = require("@jbrowse/core/configuration");
|
|
7
|
+
const util_1 = require("@jbrowse/core/util");
|
|
8
8
|
function moveUp(arr, sel, by = 1) {
|
|
9
9
|
const idxs = sel
|
|
10
10
|
.map(l => arr.findIndex(v => v.name === l))
|
|
@@ -1,16 +1,10 @@
|
|
|
1
|
-
import PluginManager from '@jbrowse/core/PluginManager';
|
|
1
|
+
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
2
2
|
export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
3
|
-
/**
|
|
4
|
-
* #slot
|
|
5
|
-
*/
|
|
6
3
|
defaultRendering: {
|
|
7
4
|
type: string;
|
|
8
5
|
model: import("mobx-state-tree").ISimpleType<string>;
|
|
9
6
|
defaultValue: string;
|
|
10
7
|
};
|
|
11
|
-
/**
|
|
12
|
-
* #slot
|
|
13
|
-
*/
|
|
14
8
|
renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
15
9
|
MultiXYPlotRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
16
10
|
MultiDensityRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
@@ -18,9 +12,6 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
|
|
|
18
12
|
MultiLineRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
19
13
|
MultiRowLineRenderer: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
20
14
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
21
|
-
/**
|
|
22
|
-
* #slot
|
|
23
|
-
*/
|
|
24
15
|
height: {
|
|
25
16
|
type: string;
|
|
26
17
|
defaultValue: number;
|