@jbrowse/plugin-wiggle 2.17.0 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (318) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +4 -3
  2. package/dist/BigWigAdapter/BigWigAdapter.js +3 -8
  3. package/dist/BigWigAdapter/configSchema.d.ts +0 -9
  4. package/dist/BigWigAdapter/configSchema.js +1 -13
  5. package/dist/BigWigAdapter/index.d.ts +1 -1
  6. package/dist/BigWigAdapter/index.js +17 -7
  7. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
  8. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +14 -49
  9. package/dist/CreateMultiWiggleExtension/index.d.ts +1 -1
  10. package/dist/CreateMultiWiggleExtension/index.js +43 -33
  11. package/dist/DensityRenderer/DensityRenderer.d.ts +2 -1
  12. package/dist/DensityRenderer/DensityRenderer.js +35 -2
  13. package/dist/DensityRenderer/configSchema.js +1 -7
  14. package/dist/DensityRenderer/index.d.ts +1 -1
  15. package/dist/DensityRenderer/index.js +1 -1
  16. package/dist/GuessAdapter/index.d.ts +2 -0
  17. package/dist/GuessAdapter/index.js +25 -0
  18. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
  19. package/dist/LinePlotRenderer/LinePlotRenderer.js +35 -2
  20. package/dist/LinePlotRenderer/configSchema.d.ts +0 -3
  21. package/dist/LinePlotRenderer/configSchema.js +1 -10
  22. package/dist/LinePlotRenderer/index.d.ts +1 -1
  23. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
  24. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +23 -59
  25. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
  26. package/dist/LinearWiggleDisplay/components/Tooltip.js +5 -18
  27. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  28. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +11 -14
  29. package/dist/LinearWiggleDisplay/configSchema.d.ts +1 -12
  30. package/dist/LinearWiggleDisplay/configSchema.js +0 -15
  31. package/dist/LinearWiggleDisplay/index.d.ts +1 -1
  32. package/dist/LinearWiggleDisplay/index.js +18 -8
  33. package/dist/LinearWiggleDisplay/model.d.ts +44 -79
  34. package/dist/LinearWiggleDisplay/model.js +39 -71
  35. package/dist/LinearWiggleDisplay/renderSvg.d.ts +3 -4
  36. package/dist/LinearWiggleDisplay/renderSvg.js +2 -6
  37. package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
  38. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +40 -6
  39. package/dist/MultiDensityRenderer/configSchema.js +1 -7
  40. package/dist/MultiDensityRenderer/index.d.ts +1 -1
  41. package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
  42. package/dist/MultiLineRenderer/MultiLineRenderer.js +35 -3
  43. package/dist/MultiLineRenderer/configSchema.d.ts +0 -6
  44. package/dist/MultiLineRenderer/configSchema.js +1 -13
  45. package/dist/MultiLineRenderer/index.d.ts +1 -1
  46. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
  47. package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
  48. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
  49. package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +17 -0
  50. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
  51. package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +15 -0
  52. package/dist/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
  53. package/dist/MultiLinearWiggleDisplay/components/LegendItem.js +19 -0
  54. package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
  55. package/dist/MultiLinearWiggleDisplay/components/RectBg.js +2 -5
  56. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
  57. package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +2 -4
  58. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
  59. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +21 -60
  60. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
  61. package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +80 -97
  62. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
  63. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
  64. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  65. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
  66. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
  67. package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +7 -27
  68. package/dist/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
  69. package/dist/MultiLinearWiggleDisplay/components/util.js +1 -1
  70. package/dist/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
  71. package/dist/MultiLinearWiggleDisplay/configSchema.js +1 -19
  72. package/dist/MultiLinearWiggleDisplay/index.d.ts +1 -1
  73. package/dist/MultiLinearWiggleDisplay/index.js +18 -8
  74. package/dist/MultiLinearWiggleDisplay/model.d.ts +27 -146
  75. package/dist/MultiLinearWiggleDisplay/model.js +44 -128
  76. package/dist/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
  77. package/dist/MultiLinearWiggleDisplay/renderSvg.js +2 -5
  78. package/dist/MultiLinearWiggleDisplay/util.d.ts +1 -0
  79. package/dist/MultiLinearWiggleDisplay/util.js +10 -0
  80. package/dist/MultiQuantitativeTrack/configSchema.d.ts +1 -1
  81. package/dist/MultiQuantitativeTrack/configSchema.js +1 -7
  82. package/dist/MultiQuantitativeTrack/index.d.ts +1 -1
  83. package/dist/MultiQuantitativeTrack/index.js +1 -1
  84. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
  85. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +35 -3
  86. package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -6
  87. package/dist/MultiRowLineRenderer/configSchema.js +2 -14
  88. package/dist/MultiRowLineRenderer/index.d.ts +1 -1
  89. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
  90. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +35 -3
  91. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
  92. package/dist/MultiRowXYPlotRenderer/configSchema.js +2 -20
  93. package/dist/MultiRowXYPlotRenderer/index.d.ts +1 -1
  94. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
  95. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +8 -13
  96. package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -6
  97. package/dist/MultiWiggleAdapter/configSchema.js +1 -10
  98. package/dist/MultiWiggleAdapter/index.d.ts +1 -1
  99. package/dist/MultiWiggleAdapter/index.js +18 -8
  100. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
  101. package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -104
  102. package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
  103. package/dist/MultiWiggleAddTrackWorkflow/index.js +18 -9
  104. package/dist/MultiWiggleRendering.d.ts +4 -5
  105. package/dist/MultiWiggleRendering.js +6 -29
  106. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
  107. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +36 -4
  108. package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -12
  109. package/dist/MultiXYPlotRenderer/configSchema.js +1 -19
  110. package/dist/MultiXYPlotRenderer/index.d.ts +1 -1
  111. package/dist/QuantitativeTrack/configSchema.d.ts +1 -1
  112. package/dist/QuantitativeTrack/configSchema.js +1 -7
  113. package/dist/QuantitativeTrack/index.d.ts +1 -1
  114. package/dist/QuantitativeTrack/index.js +1 -1
  115. package/dist/Tooltip.d.ts +2 -3
  116. package/dist/Tooltip.js +7 -34
  117. package/dist/WiggleBaseRenderer.d.ts +8 -11
  118. package/dist/WiggleBaseRenderer.js +0 -1
  119. package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
  120. package/dist/WiggleRPC/MultiWiggleGetSources.js +2 -29
  121. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
  122. package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
  123. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
  124. package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
  125. package/dist/WiggleRendering.d.ts +3 -4
  126. package/dist/WiggleRendering.js +5 -30
  127. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
  128. package/dist/XYPlotRenderer/XYPlotRenderer.js +37 -6
  129. package/dist/XYPlotRenderer/configSchema.d.ts +0 -12
  130. package/dist/XYPlotRenderer/configSchema.js +2 -20
  131. package/dist/XYPlotRenderer/index.d.ts +1 -1
  132. package/dist/configSchema.d.ts +0 -18
  133. package/dist/configSchema.js +1 -23
  134. package/dist/drawDensity.d.ts +3 -3
  135. package/dist/drawDensity.js +0 -4
  136. package/dist/drawLine.d.ts +3 -3
  137. package/dist/drawLine.js +0 -5
  138. package/dist/drawXY.d.ts +4 -3
  139. package/dist/drawXY.js +28 -12
  140. package/dist/getMultiWiggleSourcesAutorun.d.ts +2 -2
  141. package/dist/getMultiWiggleSourcesAutorun.js +10 -7
  142. package/dist/getQuantitativeStats.d.ts +3 -3
  143. package/dist/getQuantitativeStats.js +2 -10
  144. package/dist/getQuantitativeStatsAutorun.d.ts +3 -3
  145. package/dist/getQuantitativeStatsAutorun.js +18 -20
  146. package/dist/index.d.ts +7 -7
  147. package/dist/index.js +40 -58
  148. package/dist/shared/SetMinMaxDialog.d.ts +1 -2
  149. package/dist/shared/SetMinMaxDialog.js +12 -42
  150. package/dist/shared/SharedWiggleConfigSchema.d.ts +0 -26
  151. package/dist/shared/SharedWiggleConfigSchema.js +1 -30
  152. package/dist/shared/SharedWiggleMixin.d.ts +26 -231
  153. package/dist/shared/SharedWiggleMixin.js +24 -184
  154. package/dist/shared/YScaleBar.d.ts +1 -2
  155. package/dist/shared/YScaleBar.js +2 -5
  156. package/dist/util.d.ts +0 -28
  157. package/dist/util.js +1 -45
  158. package/esm/BigWigAdapter/BigWigAdapter.d.ts +4 -3
  159. package/esm/BigWigAdapter/BigWigAdapter.js +5 -10
  160. package/esm/BigWigAdapter/configSchema.d.ts +0 -9
  161. package/esm/BigWigAdapter/configSchema.js +1 -13
  162. package/esm/BigWigAdapter/index.d.ts +1 -1
  163. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
  164. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +14 -26
  165. package/esm/CreateMultiWiggleExtension/index.d.ts +1 -1
  166. package/esm/CreateMultiWiggleExtension/index.js +26 -26
  167. package/esm/DensityRenderer/DensityRenderer.d.ts +2 -1
  168. package/esm/DensityRenderer/DensityRenderer.js +1 -1
  169. package/esm/DensityRenderer/configSchema.js +1 -7
  170. package/esm/DensityRenderer/index.d.ts +1 -1
  171. package/esm/DensityRenderer/index.js +1 -1
  172. package/esm/GuessAdapter/index.d.ts +2 -0
  173. package/esm/GuessAdapter/index.js +22 -0
  174. package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
  175. package/esm/LinePlotRenderer/LinePlotRenderer.js +1 -1
  176. package/esm/LinePlotRenderer/configSchema.d.ts +0 -3
  177. package/esm/LinePlotRenderer/configSchema.js +1 -10
  178. package/esm/LinePlotRenderer/index.d.ts +1 -1
  179. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
  180. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +23 -36
  181. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
  182. package/esm/LinearWiggleDisplay/components/Tooltip.js +5 -18
  183. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  184. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +12 -15
  185. package/esm/LinearWiggleDisplay/configSchema.d.ts +1 -12
  186. package/esm/LinearWiggleDisplay/configSchema.js +0 -15
  187. package/esm/LinearWiggleDisplay/index.d.ts +1 -1
  188. package/esm/LinearWiggleDisplay/index.js +1 -1
  189. package/esm/LinearWiggleDisplay/model.d.ts +44 -79
  190. package/esm/LinearWiggleDisplay/model.js +24 -66
  191. package/esm/LinearWiggleDisplay/renderSvg.d.ts +3 -4
  192. package/esm/LinearWiggleDisplay/renderSvg.js +2 -6
  193. package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
  194. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +5 -4
  195. package/esm/MultiDensityRenderer/configSchema.js +1 -7
  196. package/esm/MultiDensityRenderer/index.d.ts +1 -1
  197. package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
  198. package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
  199. package/esm/MultiLineRenderer/configSchema.d.ts +0 -6
  200. package/esm/MultiLineRenderer/configSchema.js +1 -13
  201. package/esm/MultiLineRenderer/index.d.ts +1 -1
  202. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
  203. package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
  204. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
  205. package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +12 -0
  206. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
  207. package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +10 -0
  208. package/esm/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
  209. package/esm/MultiLinearWiggleDisplay/components/LegendItem.js +14 -0
  210. package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
  211. package/esm/MultiLinearWiggleDisplay/components/RectBg.js +2 -2
  212. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
  213. package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +3 -5
  214. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
  215. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +22 -38
  216. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
  217. package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +64 -91
  218. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
  219. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
  220. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
  221. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
  222. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
  223. package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +8 -28
  224. package/esm/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
  225. package/esm/MultiLinearWiggleDisplay/components/util.js +1 -1
  226. package/esm/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
  227. package/esm/MultiLinearWiggleDisplay/configSchema.js +1 -19
  228. package/esm/MultiLinearWiggleDisplay/index.d.ts +1 -1
  229. package/esm/MultiLinearWiggleDisplay/index.js +1 -1
  230. package/esm/MultiLinearWiggleDisplay/model.d.ts +27 -146
  231. package/esm/MultiLinearWiggleDisplay/model.js +27 -121
  232. package/esm/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
  233. package/esm/MultiLinearWiggleDisplay/renderSvg.js +2 -5
  234. package/esm/MultiLinearWiggleDisplay/util.d.ts +1 -0
  235. package/esm/MultiLinearWiggleDisplay/util.js +7 -0
  236. package/esm/MultiQuantitativeTrack/configSchema.d.ts +1 -1
  237. package/esm/MultiQuantitativeTrack/configSchema.js +1 -7
  238. package/esm/MultiQuantitativeTrack/index.d.ts +1 -1
  239. package/esm/MultiQuantitativeTrack/index.js +1 -1
  240. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
  241. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
  242. package/esm/MultiRowLineRenderer/configSchema.d.ts +0 -6
  243. package/esm/MultiRowLineRenderer/configSchema.js +2 -14
  244. package/esm/MultiRowLineRenderer/index.d.ts +1 -1
  245. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
  246. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
  247. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
  248. package/esm/MultiRowXYPlotRenderer/configSchema.js +2 -20
  249. package/esm/MultiRowXYPlotRenderer/index.d.ts +1 -1
  250. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
  251. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +9 -14
  252. package/esm/MultiWiggleAdapter/configSchema.d.ts +0 -6
  253. package/esm/MultiWiggleAdapter/configSchema.js +1 -10
  254. package/esm/MultiWiggleAdapter/index.d.ts +1 -1
  255. package/esm/MultiWiggleAdapter/index.js +1 -1
  256. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
  257. package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -80
  258. package/esm/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
  259. package/esm/MultiWiggleAddTrackWorkflow/index.js +1 -2
  260. package/esm/MultiWiggleRendering.d.ts +4 -5
  261. package/esm/MultiWiggleRendering.js +6 -6
  262. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
  263. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -3
  264. package/esm/MultiXYPlotRenderer/configSchema.d.ts +0 -12
  265. package/esm/MultiXYPlotRenderer/configSchema.js +1 -19
  266. package/esm/MultiXYPlotRenderer/index.d.ts +1 -1
  267. package/esm/QuantitativeTrack/configSchema.d.ts +1 -1
  268. package/esm/QuantitativeTrack/configSchema.js +1 -7
  269. package/esm/QuantitativeTrack/index.d.ts +1 -1
  270. package/esm/QuantitativeTrack/index.js +1 -1
  271. package/esm/Tooltip.d.ts +2 -3
  272. package/esm/Tooltip.js +7 -11
  273. package/esm/WiggleBaseRenderer.d.ts +8 -11
  274. package/esm/WiggleBaseRenderer.js +0 -1
  275. package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
  276. package/esm/WiggleRPC/MultiWiggleGetSources.js +2 -29
  277. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
  278. package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
  279. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
  280. package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
  281. package/esm/WiggleRendering.d.ts +3 -4
  282. package/esm/WiggleRendering.js +5 -7
  283. package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
  284. package/esm/XYPlotRenderer/XYPlotRenderer.js +3 -5
  285. package/esm/XYPlotRenderer/configSchema.d.ts +0 -12
  286. package/esm/XYPlotRenderer/configSchema.js +2 -20
  287. package/esm/XYPlotRenderer/index.d.ts +1 -1
  288. package/esm/configSchema.d.ts +0 -18
  289. package/esm/configSchema.js +1 -23
  290. package/esm/drawDensity.d.ts +3 -3
  291. package/esm/drawDensity.js +1 -5
  292. package/esm/drawLine.d.ts +3 -3
  293. package/esm/drawLine.js +1 -6
  294. package/esm/drawXY.d.ts +4 -3
  295. package/esm/drawXY.js +29 -13
  296. package/esm/getMultiWiggleSourcesAutorun.d.ts +2 -2
  297. package/esm/getMultiWiggleSourcesAutorun.js +9 -6
  298. package/esm/getQuantitativeStats.d.ts +3 -3
  299. package/esm/getQuantitativeStats.js +3 -11
  300. package/esm/getQuantitativeStatsAutorun.d.ts +3 -3
  301. package/esm/getQuantitativeStatsAutorun.js +18 -20
  302. package/esm/index.d.ts +7 -7
  303. package/esm/index.js +14 -42
  304. package/esm/shared/SetMinMaxDialog.d.ts +1 -2
  305. package/esm/shared/SetMinMaxDialog.js +12 -19
  306. package/esm/shared/SharedWiggleConfigSchema.d.ts +0 -26
  307. package/esm/shared/SharedWiggleConfigSchema.js +1 -30
  308. package/esm/shared/SharedWiggleMixin.d.ts +26 -231
  309. package/esm/shared/SharedWiggleMixin.js +8 -178
  310. package/esm/shared/YScaleBar.d.ts +1 -2
  311. package/esm/shared/YScaleBar.js +2 -2
  312. package/esm/util.d.ts +0 -28
  313. package/esm/util.js +1 -45
  314. package/package.json +3 -6
  315. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
  316. package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -66
  317. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
  318. package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -38
@@ -3,49 +3,31 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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- const mobx_state_tree_1 = require("mobx-state-tree");
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  const configuration_1 = require("@jbrowse/core/configuration");
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+ const mobx_state_tree_1 = require("mobx-state-tree");
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  const configSchema_1 = __importDefault(require("../configSchema"));
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- /**
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- * #config MultiRowXYPlotRenderer
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- */
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- function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
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+ function x() { }
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  const configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowXYPlotRenderer', {
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- /**
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- * #slot
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- */
17
11
  filled: {
18
12
  type: 'boolean',
19
13
  defaultValue: true,
20
14
  },
21
- /**
22
- * #slot
23
- */
24
15
  displayCrossHatches: {
25
16
  type: 'boolean',
26
17
  description: 'choose to draw cross hatches (sideways lines)',
27
18
  defaultValue: false,
28
19
  },
29
- /**
30
- * #slot
31
- */
32
20
  summaryScoreMode: {
33
21
  type: 'stringEnum',
34
22
  model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
35
23
  description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
36
24
  defaultValue: 'whiskers',
37
25
  },
38
- /**
39
- * #slot
40
- */
41
26
  minSize: {
42
27
  type: 'number',
43
28
  defaultValue: 0.7,
44
29
  },
45
30
  }, {
46
- /**
47
- * #baseConfiguration
48
- */
49
31
  baseConfiguration: configSchema_1.default,
50
32
  explicitlyTyped: true,
51
33
  });
@@ -1,2 +1,2 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
1
+ import type PluginManager from '@jbrowse/core/PluginManager';
2
2
  export default function MultiRowXYPlotRendererF(pluginManager: PluginManager): void;
@@ -1,6 +1,7 @@
1
- import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
2
- import { AugmentedRegion as Region } from '@jbrowse/core/util/types';
3
- import { Feature } from '@jbrowse/core/util';
1
+ import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
2
+ import type { BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
3
+ import type { Feature } from '@jbrowse/core/util';
4
+ import type { AugmentedRegion as Region } from '@jbrowse/core/util/types';
4
5
  interface WiggleOptions extends BaseOptions {
5
6
  resolution?: number;
6
7
  }
@@ -1,8 +1,8 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  const BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
4
- const rxjs_1 = require("@jbrowse/core/util/rxjs");
5
4
  const util_1 = require("@jbrowse/core/util");
5
+ const rxjs_1 = require("@jbrowse/core/util/rxjs");
6
6
  const rxjs_2 = require("rxjs");
7
7
  const operators_1 = require("rxjs/operators");
8
8
  function getFilename(uri) {
@@ -36,7 +36,6 @@ class MultiWiggleAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
36
36
  };
37
37
  }));
38
38
  }
39
- // note: can't really have dis-agreeing refNames
40
39
  async getRefNames(opts) {
41
40
  const adapters = await this.getAdapters();
42
41
  const allNames = await Promise.all(adapters.map(a => a.dataAdapter.getRefNames(opts)));
@@ -44,35 +43,31 @@ class MultiWiggleAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
44
43
  }
45
44
  async getGlobalStats(opts) {
46
45
  const adapters = await this.getAdapters();
47
- const stats = (await Promise.all(
48
- // @ts-expect-error
49
- adapters.map(adp => { var _a, _b; return (_b = (_a = adp.dataAdapter).getGlobalStats) === null || _b === void 0 ? void 0 : _b.call(_a, opts); }))).filter(f => !!f);
46
+ const stats = (await Promise.all(adapters.map(adp => { var _a, _b; return (_b = (_a = adp.dataAdapter).getGlobalStats) === null || _b === void 0 ? void 0 : _b.call(_a, opts); }))).filter(f => !!f);
50
47
  const scoreMin = (0, util_1.min)(stats.map(s => s.scoreMin));
51
48
  const scoreMax = (0, util_1.max)(stats.map(s => s.scoreMax));
52
- return { scoreMin, scoreMax };
49
+ return {
50
+ scoreMin,
51
+ scoreMax,
52
+ };
53
53
  }
54
54
  getFeatures(region, opts = {}) {
55
55
  return (0, rxjs_1.ObservableCreate)(async (observer) => {
56
56
  const adapters = await this.getAdapters();
57
- (0, rxjs_2.merge)(...adapters.map(adp => adp.dataAdapter.getFeatures(region, opts).pipe((0, operators_1.map)(p =>
58
- // add source field if it does not exist
59
- p.get('source')
57
+ (0, rxjs_2.merge)(...adapters.map(adp => adp.dataAdapter.getFeatures(region, opts).pipe((0, operators_1.map)(p => p.get('source')
60
58
  ? p
61
59
  : new util_1.SimpleFeature({
62
60
  ...p.toJSON(),
63
61
  uniqueId: `${adp.source}-${p.id()}`,
64
62
  source: adp.source,
65
63
  }))))).subscribe(observer);
66
- }, opts.signal);
64
+ }, opts.stopToken);
67
65
  }
68
- // always render bigwig instead of calculating a feature density for it
69
66
  async getMultiRegionFeatureDensityStats(_regions) {
70
67
  return {
71
68
  featureDensity: 0,
72
69
  };
73
70
  }
74
- // in another adapter type, this could be dynamic depending on region or
75
- // something, but it is static for this particular multi-wiggle adapter type
76
71
  async getSources(_regions) {
77
72
  const adapters = await this.getAdapters();
78
73
  return adapters.map(({ dataAdapter, source, name, ...rest }) => ({
@@ -1,15 +1,9 @@
1
1
  declare const MultiWiggleAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
- /**
3
- * #slot
4
- */
5
2
  subadapters: {
6
3
  type: string;
7
4
  defaultValue: never[];
8
5
  description: string;
9
6
  };
10
- /**
11
- * #slot
12
- */
13
7
  bigWigs: {
14
8
  type: string;
15
9
  description: string;
@@ -1,22 +1,13 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  const configuration_1 = require("@jbrowse/core/configuration");
4
- /**
5
- * #config MultiWiggleAdapter
6
- */
7
- function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
4
+ function x() { }
8
5
  const MultiWiggleAdapter = (0, configuration_1.ConfigurationSchema)('MultiWiggleAdapter', {
9
- /**
10
- * #slot
11
- */
12
6
  subadapters: {
13
7
  type: 'frozen',
14
8
  defaultValue: [],
15
9
  description: 'array of subadapter JSON objects',
16
10
  },
17
- /**
18
- * #slot
19
- */
20
11
  bigWigs: {
21
12
  type: 'frozen',
22
13
  description: 'array of bigwig filenames, alternative to the subadapters slot',
@@ -1,2 +1,2 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
1
+ import type PluginManager from '@jbrowse/core/PluginManager';
2
2
  export default function MultiWiggleAdapterF(pluginManager: PluginManager): void;
@@ -15,20 +15,30 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
15
15
  }) : function(o, v) {
16
16
  o["default"] = v;
17
17
  });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
25
35
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
36
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
37
  };
28
38
  Object.defineProperty(exports, "__esModule", { value: true });
29
39
  exports.default = MultiWiggleAdapterF;
30
- const configSchema_1 = __importDefault(require("./configSchema"));
31
40
  const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
41
+ const configSchema_1 = __importDefault(require("./configSchema"));
32
42
  function MultiWiggleAdapterF(pluginManager) {
33
43
  pluginManager.addAdapterType(() => new AdapterType_1.default({
34
44
  name: 'MultiWiggleAdapter',
@@ -1,5 +1,5 @@
1
- import React from 'react';
2
- import { AddTrackModel } from '@jbrowse/plugin-data-management';
3
- export default function MultiWiggleWidget({ model }: {
1
+ import type { AddTrackModel } from '@jbrowse/plugin-data-management';
2
+ declare const MultiWiggleAddTrackWorkflow: ({ model, }: {
4
3
  model: AddTrackModel;
5
- }): React.JSX.Element;
4
+ }) => import("react/jsx-runtime").JSX.Element;
5
+ export default MultiWiggleAddTrackWorkflow;
@@ -1,34 +1,12 @@
1
1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  Object.defineProperty(exports, "__esModule", { value: true });
26
- exports.default = MultiWiggleWidget;
27
- const react_1 = __importStar(require("react"));
28
- const material_1 = require("@mui/material");
29
- const mui_1 = require("tss-react/mui");
3
+ const jsx_runtime_1 = require("react/jsx-runtime");
4
+ const react_1 = require("react");
30
5
  const util_1 = require("@jbrowse/core/util");
31
6
  const tracks_1 = require("@jbrowse/core/util/tracks");
7
+ const material_1 = require("@mui/material");
8
+ const mobx_react_1 = require("mobx-react");
9
+ const mui_1 = require("tss-react/mui");
32
10
  const useStyles = (0, mui_1.makeStyles)()(theme => ({
33
11
  paper: {
34
12
  margin: theme.spacing(),
@@ -40,7 +18,6 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
40
18
  display: 'block',
41
19
  },
42
20
  }));
43
- // on electron, use path to LocalFileLocation, on web, use the BlobLocation
44
21
  function makeFileLocation(file) {
45
22
  const { webUtils } = window.require('electron');
46
23
  return util_1.isElectron
@@ -50,82 +27,64 @@ function makeFileLocation(file) {
50
27
  }
51
28
  : (0, tracks_1.storeBlobLocation)({ blob: file });
52
29
  }
53
- function MultiWiggleWidget({ model }) {
30
+ function doSubmit({ trackName, val, model, }) {
31
+ var _a;
32
+ const session = (0, util_1.getSession)(model);
33
+ try {
34
+ const trackId = [
35
+ `${trackName.toLowerCase().replaceAll(' ', '_')}-${Date.now()}`,
36
+ session.adminMode ? '' : '-sessionTrack',
37
+ ].join('');
38
+ let bigWigs;
39
+ try {
40
+ bigWigs = JSON.parse(val);
41
+ }
42
+ catch (e) {
43
+ bigWigs = val
44
+ .split(/\n|\r\n|\r/)
45
+ .map(f => f.trim())
46
+ .filter(f => !!f);
47
+ }
48
+ const obj = typeof bigWigs[0] === 'string' ? { bigWigs } : { subadapters: bigWigs };
49
+ if ((0, util_1.isSessionWithAddTracks)(session)) {
50
+ session.addTrackConf({
51
+ trackId,
52
+ type: 'MultiQuantitativeTrack',
53
+ name: trackName,
54
+ assemblyNames: [model.assembly],
55
+ adapter: {
56
+ type: 'MultiWiggleAdapter',
57
+ ...obj,
58
+ },
59
+ });
60
+ (_a = model.view) === null || _a === void 0 ? void 0 : _a.showTrack(trackId);
61
+ }
62
+ model.clearData();
63
+ if ((0, util_1.isSessionModelWithWidgets)(session)) {
64
+ session.hideWidget(model);
65
+ }
66
+ }
67
+ catch (e) {
68
+ console.error(e);
69
+ session.notifyError(`${e}`, e);
70
+ }
71
+ }
72
+ const MultiWiggleAddTrackWorkflow = (0, mobx_react_1.observer)(function ({ model, }) {
54
73
  const { classes } = useStyles();
55
74
  const [val, setVal] = (0, react_1.useState)('');
56
75
  const [trackName, setTrackName] = (0, react_1.useState)(`MultiWiggle${+Date.now()}`);
57
- return (react_1.default.createElement(material_1.Paper, { className: classes.paper },
58
- react_1.default.createElement("ul", null,
59
- react_1.default.createElement("li", null, "Enter list of URLs for bigwig files in the textbox"),
60
- react_1.default.createElement("li", null, "Or, use the button below the text box to select files from your computer")),
61
- react_1.default.createElement(material_1.TextField, { multiline: true, fullWidth: true, rows: 10, value: val, placeholder: "Paste list of URLs here, or use file selector below", variant: "outlined", onChange: event => {
62
- setVal(event.target.value);
63
- } }),
64
- react_1.default.createElement(material_1.Button, { variant: "outlined", component: "label" },
65
- "Choose Files from your computer",
66
- react_1.default.createElement("input", { type: "file", hidden: true, multiple: true, onChange: ({ target }) => {
67
- const res = [...(target.files || [])].map(file => ({
68
- type: 'BigWigAdapter',
69
- bigWigLocation: makeFileLocation(file),
70
- source: file.name,
71
- }));
72
- setVal(JSON.stringify(res, null, 2));
73
- } })),
74
- react_1.default.createElement(material_1.TextField, { value: trackName, helperText: "Track name", onChange: event => {
75
- setTrackName(event.target.value);
76
- } }),
77
- react_1.default.createElement(material_1.Button, { variant: "contained", className: classes.submit, onClick: () => {
78
- var _a;
79
- const session = (0, util_1.getSession)(model);
80
- try {
81
- const trackId = [
82
- `${trackName.toLowerCase().replaceAll(' ', '_')}-${Date.now()}`,
83
- session.adminMode ? '' : '-sessionTrack',
84
- ].join('');
85
- // allow list of bigwigs in JSON format or line-by-line
86
- let bigWigs;
87
- try {
88
- bigWigs = JSON.parse(val);
89
- }
90
- catch (e) {
91
- bigWigs = val
92
- .split(/\n|\r\n|\r/)
93
- .map(f => f.trim())
94
- .filter(f => !!f);
95
- }
96
- const obj = typeof bigWigs[0] === 'string'
97
- ? { bigWigs }
98
- : { subadapters: bigWigs };
99
- if ((0, util_1.isSessionWithAddTracks)(session)) {
100
- session.addTrackConf({
101
- trackId,
102
- type: 'MultiQuantitativeTrack',
103
- name: trackName,
104
- assemblyNames: [model.assembly],
105
- adapter: {
106
- type: 'MultiWiggleAdapter',
107
- ...obj,
108
- },
109
- });
110
- (_a = model.view) === null || _a === void 0 ? void 0 : _a.showTrack(trackId);
111
- }
112
- model.clearData();
113
- if ((0, util_1.isSessionModelWithWidgets)(session)) {
114
- session.hideWidget(model);
115
- }
116
- }
117
- catch (e) {
118
- console.error(e);
119
- session.notifyError(`${e}`, e);
120
- }
121
- } }, "Submit"),
122
- react_1.default.createElement("p", null, "Additional notes: "),
123
- react_1.default.createElement("ul", null,
124
- react_1.default.createElement("li", null,
125
- "The list of bigwig files in the text box can be a list of URLs, or a list of elements like",
126
- ' ',
127
- react_1.default.createElement("code", null, `[{"type":"BigWigAdapter","bigWigLocation":{"uri":"http://host/file.bw"}, "color":"green","source":"name for subtrack"}]`),
128
- ' ',
129
- "to apply e.g. the color attribute to the view"),
130
- react_1.default.createElement("li", null, "Adding local files will update the textbox with JSON contents that are ready to submit with the \"Submit\" button"))));
131
- }
76
+ return ((0, jsx_runtime_1.jsxs)(material_1.Paper, { className: classes.paper, children: [(0, jsx_runtime_1.jsxs)("ul", { children: [(0, jsx_runtime_1.jsx)("li", { children: "Enter list of URLs for bigwig files in the textbox" }), (0, jsx_runtime_1.jsx)("li", { children: "Or, use the button below the text box to select files from your computer" })] }), (0, jsx_runtime_1.jsx)(material_1.TextField, { multiline: true, fullWidth: true, rows: 10, value: val, placeholder: "Paste list of URLs here, or use file selector below", variant: "outlined", onChange: event => {
77
+ setVal(event.target.value);
78
+ } }), (0, jsx_runtime_1.jsxs)(material_1.Button, { variant: "outlined", component: "label", children: ["Choose Files from your computer", (0, jsx_runtime_1.jsx)("input", { type: "file", hidden: true, multiple: true, onChange: ({ target }) => {
79
+ setVal(JSON.stringify([...(target.files || [])].map(file => ({
80
+ type: 'BigWigAdapter',
81
+ bigWigLocation: makeFileLocation(file),
82
+ source: file.name,
83
+ })), null, 2));
84
+ } })] }), (0, jsx_runtime_1.jsx)(material_1.TextField, { value: trackName, helperText: "Track name", onChange: event => {
85
+ setTrackName(event.target.value);
86
+ } }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", className: classes.submit, onClick: () => {
87
+ doSubmit({ trackName, val, model });
88
+ }, children: "Submit" }), (0, jsx_runtime_1.jsx)("p", { children: "Additional notes: " }), (0, jsx_runtime_1.jsxs)("ul", { children: [(0, jsx_runtime_1.jsxs)("li", { children: ["The list of bigwig files in the text box can be a list of URLs, or a list of elements like", ' ', (0, jsx_runtime_1.jsx)("code", { children: `[{"type":"BigWigAdapter","bigWigLocation":{"uri":"http://host/file.bw"}, "color":"green","source":"name for subtrack"}]` }), ' ', "to apply e.g. the color attribute to the view"] }), (0, jsx_runtime_1.jsx)("li", { children: "Adding local files will update the textbox with JSON contents that are ready to submit with the \"Submit\" button" })] })] }));
89
+ });
90
+ exports.default = MultiWiggleAddTrackWorkflow;
@@ -1,2 +1,2 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
1
+ import type PluginManager from '@jbrowse/core/PluginManager';
2
2
  export default function MultiWiggleAddTrackWorkflowF(pm: PluginManager): void;
@@ -15,19 +15,28 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
15
15
  }) : function(o, v) {
16
16
  o["default"] = v;
17
17
  });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
25
35
  Object.defineProperty(exports, "__esModule", { value: true });
26
36
  exports.default = MultiWiggleAddTrackWorkflowF;
37
+ const react_1 = require("react");
27
38
  const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
28
39
  const mobx_state_tree_1 = require("mobx-state-tree");
29
- // locals
30
- const react_1 = require("react");
31
40
  function MultiWiggleAddTrackWorkflowF(pm) {
32
41
  pm.addAddTrackWorkflowType(() => new pluggableElementTypes_1.AddTrackWorkflowType({
33
42
  name: 'Multi-wiggle track',
@@ -1,7 +1,6 @@
1
- import React from 'react';
2
- import { Region } from '@jbrowse/core/util/types';
3
- import { Feature } from '@jbrowse/core/util';
4
- import { Source } from './util';
1
+ import type { Source } from './util';
2
+ import type { Feature } from '@jbrowse/core/util';
3
+ import type { Region } from '@jbrowse/core/util/types';
5
4
  declare const MultiWiggleRendering: (props: {
6
5
  regions: Region[];
7
6
  features: Map<string, Feature>;
@@ -16,5 +15,5 @@ declare const MultiWiggleRendering: (props: {
16
15
  onMouseLeave?: (event: React.MouseEvent) => void;
17
16
  onMouseMove?: (event: React.MouseEvent, arg?: Feature) => void;
18
17
  onFeatureClick?: (event: React.MouseEvent, arg?: Feature) => void;
19
- }) => React.JSX.Element;
18
+ }) => import("react/jsx-runtime").JSX.Element;
20
19
  export default MultiWiggleRendering;
@@ -1,32 +1,10 @@
1
1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  Object.defineProperty(exports, "__esModule", { value: true });
26
- const mobx_react_1 = require("mobx-react");
27
- const react_1 = __importStar(require("react"));
28
- const util_1 = require("@jbrowse/core/util");
3
+ const jsx_runtime_1 = require("react/jsx-runtime");
4
+ const react_1 = require("react");
29
5
  const ui_1 = require("@jbrowse/core/ui");
6
+ const util_1 = require("@jbrowse/core/util");
7
+ const mobx_react_1 = require("mobx-react");
30
8
  const MultiWiggleRendering = (0, mobx_react_1.observer)(function (props) {
31
9
  const { regions, features, bpPerPx, width, height, sources, onMouseLeave = () => { }, onMouseMove = () => { }, onFeatureClick = () => { }, displayModel, } = props;
32
10
  const region = regions[0];
@@ -84,7 +62,7 @@ const MultiWiggleRendering = (0, mobx_react_1.observer)(function (props) {
84
62
  }
85
63
  return featureUnderMouse;
86
64
  }
87
- return (react_1.default.createElement("div", { ref: ref, onMouseMove: event => {
65
+ return ((0, jsx_runtime_1.jsx)("div", { ref: ref, onMouseMove: event => {
88
66
  const { clientX, clientY } = event;
89
67
  const featureUnderMouse = getFeatureUnderMouse(clientX, clientY);
90
68
  onMouseMove(event, featureUnderMouse);
@@ -98,7 +76,6 @@ const MultiWiggleRendering = (0, mobx_react_1.observer)(function (props) {
98
76
  overflow: 'visible',
99
77
  position: 'relative',
100
78
  height,
101
- } },
102
- react_1.default.createElement(ui_1.PrerenderedCanvas, { ...props })));
79
+ }, children: (0, jsx_runtime_1.jsx)(ui_1.PrerenderedCanvas, { ...props }) }));
103
80
  });
104
81
  exports.default = MultiWiggleRendering;
@@ -1,5 +1,6 @@
1
- import { Feature } from '@jbrowse/core/util';
2
- import WiggleBaseRenderer, { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
1
+ import WiggleBaseRenderer from '../WiggleBaseRenderer';
2
+ import type { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
3
+ import type { Feature } from '@jbrowse/core/util';
3
4
  export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
4
5
  draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
5
6
  reducedFeatures: Feature[];
@@ -1,21 +1,53 @@
1
1
  "use strict";
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
17
+ });
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
2
35
  var __importDefault = (this && this.__importDefault) || function (mod) {
3
36
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
37
  };
5
38
  Object.defineProperty(exports, "__esModule", { value: true });
6
39
  const util_1 = require("@jbrowse/core/util");
7
- const drawXY_1 = require("../drawXY");
8
- const util_2 = require("../util");
9
40
  const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
41
+ const util_2 = require("../util");
10
42
  class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
11
- // @ts-expect-error
12
43
  async draw(ctx, props) {
13
44
  const { sources, features } = props;
14
45
  const groups = (0, util_1.groupBy)(features.values(), f => f.get('source'));
46
+ const { drawXY } = await Promise.resolve().then(() => __importStar(require('../drawXY')));
15
47
  let feats = [];
16
48
  for (const source of sources) {
17
49
  const features = groups[source.name] || [];
18
- const { reducedFeatures } = (0, drawXY_1.drawXY)(ctx, {
50
+ const { reducedFeatures } = drawXY(ctx, {
19
51
  ...props,
20
52
  features,
21
53
  offset: util_2.YSCALEBAR_LABEL_OFFSET,
@@ -1,31 +1,19 @@
1
1
  declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2
- /**
3
- * #slot
4
- */
5
2
  filled: {
6
3
  type: string;
7
4
  defaultValue: boolean;
8
5
  };
9
- /**
10
- * #slot
11
- */
12
6
  displayCrossHatches: {
13
7
  type: string;
14
8
  description: string;
15
9
  defaultValue: boolean;
16
10
  };
17
- /**
18
- * #slot
19
- */
20
11
  summaryScoreMode: {
21
12
  type: string;
22
13
  model: import("mobx-state-tree").ISimpleType<string>;
23
14
  description: string;
24
15
  defaultValue: string;
25
16
  };
26
- /**
27
- * #slot
28
- */
29
17
  minSize: {
30
18
  type: string;
31
19
  defaultValue: number;