@jbrowse/plugin-wiggle 2.17.0 → 3.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +4 -3
- package/dist/BigWigAdapter/BigWigAdapter.js +3 -8
- package/dist/BigWigAdapter/configSchema.d.ts +0 -9
- package/dist/BigWigAdapter/configSchema.js +1 -13
- package/dist/BigWigAdapter/index.d.ts +1 -1
- package/dist/BigWigAdapter/index.js +17 -7
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +14 -49
- package/dist/CreateMultiWiggleExtension/index.d.ts +1 -1
- package/dist/CreateMultiWiggleExtension/index.js +43 -33
- package/dist/DensityRenderer/DensityRenderer.d.ts +2 -1
- package/dist/DensityRenderer/DensityRenderer.js +35 -2
- package/dist/DensityRenderer/configSchema.js +1 -7
- package/dist/DensityRenderer/index.d.ts +1 -1
- package/dist/DensityRenderer/index.js +1 -1
- package/dist/GuessAdapter/index.d.ts +2 -0
- package/dist/GuessAdapter/index.js +25 -0
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
- package/dist/LinePlotRenderer/LinePlotRenderer.js +35 -2
- package/dist/LinePlotRenderer/configSchema.d.ts +0 -3
- package/dist/LinePlotRenderer/configSchema.js +1 -10
- package/dist/LinePlotRenderer/index.d.ts +1 -1
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +23 -59
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
- package/dist/LinearWiggleDisplay/components/Tooltip.js +5 -18
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +11 -14
- package/dist/LinearWiggleDisplay/configSchema.d.ts +1 -12
- package/dist/LinearWiggleDisplay/configSchema.js +0 -15
- package/dist/LinearWiggleDisplay/index.d.ts +1 -1
- package/dist/LinearWiggleDisplay/index.js +18 -8
- package/dist/LinearWiggleDisplay/model.d.ts +44 -79
- package/dist/LinearWiggleDisplay/model.js +39 -71
- package/dist/LinearWiggleDisplay/renderSvg.d.ts +3 -4
- package/dist/LinearWiggleDisplay/renderSvg.js +2 -6
- package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +40 -6
- package/dist/MultiDensityRenderer/configSchema.js +1 -7
- package/dist/MultiDensityRenderer/index.d.ts +1 -1
- package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
- package/dist/MultiLineRenderer/MultiLineRenderer.js +35 -3
- package/dist/MultiLineRenderer/configSchema.d.ts +0 -6
- package/dist/MultiLineRenderer/configSchema.js +1 -13
- package/dist/MultiLineRenderer/index.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
- package/dist/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
- package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
- package/dist/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +17 -0
- package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
- package/dist/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +15 -0
- package/dist/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
- package/dist/MultiLinearWiggleDisplay/components/LegendItem.js +19 -0
- package/dist/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
- package/dist/MultiLinearWiggleDisplay/components/RectBg.js +2 -5
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/ScoreLegend.js +2 -4
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +21 -60
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +80 -97
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
- package/dist/MultiLinearWiggleDisplay/components/YScaleBars.js +7 -27
- package/dist/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/components/util.js +1 -1
- package/dist/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
- package/dist/MultiLinearWiggleDisplay/configSchema.js +1 -19
- package/dist/MultiLinearWiggleDisplay/index.d.ts +1 -1
- package/dist/MultiLinearWiggleDisplay/index.js +18 -8
- package/dist/MultiLinearWiggleDisplay/model.d.ts +27 -146
- package/dist/MultiLinearWiggleDisplay/model.js +44 -128
- package/dist/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
- package/dist/MultiLinearWiggleDisplay/renderSvg.js +2 -5
- package/dist/MultiLinearWiggleDisplay/util.d.ts +1 -0
- package/dist/MultiLinearWiggleDisplay/util.js +10 -0
- package/dist/MultiQuantitativeTrack/configSchema.d.ts +1 -1
- package/dist/MultiQuantitativeTrack/configSchema.js +1 -7
- package/dist/MultiQuantitativeTrack/index.d.ts +1 -1
- package/dist/MultiQuantitativeTrack/index.js +1 -1
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +35 -3
- package/dist/MultiRowLineRenderer/configSchema.d.ts +0 -6
- package/dist/MultiRowLineRenderer/configSchema.js +2 -14
- package/dist/MultiRowLineRenderer/index.d.ts +1 -1
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +35 -3
- package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/MultiRowXYPlotRenderer/configSchema.js +2 -20
- package/dist/MultiRowXYPlotRenderer/index.d.ts +1 -1
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +8 -13
- package/dist/MultiWiggleAdapter/configSchema.d.ts +0 -6
- package/dist/MultiWiggleAdapter/configSchema.js +1 -10
- package/dist/MultiWiggleAdapter/index.d.ts +1 -1
- package/dist/MultiWiggleAdapter/index.js +18 -8
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
- package/dist/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -104
- package/dist/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
- package/dist/MultiWiggleAddTrackWorkflow/index.js +18 -9
- package/dist/MultiWiggleRendering.d.ts +4 -5
- package/dist/MultiWiggleRendering.js +6 -29
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +36 -4
- package/dist/MultiXYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/MultiXYPlotRenderer/configSchema.js +1 -19
- package/dist/MultiXYPlotRenderer/index.d.ts +1 -1
- package/dist/QuantitativeTrack/configSchema.d.ts +1 -1
- package/dist/QuantitativeTrack/configSchema.js +1 -7
- package/dist/QuantitativeTrack/index.d.ts +1 -1
- package/dist/QuantitativeTrack/index.js +1 -1
- package/dist/Tooltip.d.ts +2 -3
- package/dist/Tooltip.js +7 -34
- package/dist/WiggleBaseRenderer.d.ts +8 -11
- package/dist/WiggleBaseRenderer.js +0 -1
- package/dist/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
- package/dist/WiggleRPC/MultiWiggleGetSources.js +2 -29
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
- package/dist/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
- package/dist/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
- package/dist/WiggleRendering.d.ts +3 -4
- package/dist/WiggleRendering.js +5 -30
- package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
- package/dist/XYPlotRenderer/XYPlotRenderer.js +37 -6
- package/dist/XYPlotRenderer/configSchema.d.ts +0 -12
- package/dist/XYPlotRenderer/configSchema.js +2 -20
- package/dist/XYPlotRenderer/index.d.ts +1 -1
- package/dist/configSchema.d.ts +0 -18
- package/dist/configSchema.js +1 -23
- package/dist/drawDensity.d.ts +3 -3
- package/dist/drawDensity.js +0 -4
- package/dist/drawLine.d.ts +3 -3
- package/dist/drawLine.js +0 -5
- package/dist/drawXY.d.ts +4 -3
- package/dist/drawXY.js +28 -12
- package/dist/getMultiWiggleSourcesAutorun.d.ts +2 -2
- package/dist/getMultiWiggleSourcesAutorun.js +10 -7
- package/dist/getQuantitativeStats.d.ts +3 -3
- package/dist/getQuantitativeStats.js +2 -10
- package/dist/getQuantitativeStatsAutorun.d.ts +3 -3
- package/dist/getQuantitativeStatsAutorun.js +18 -20
- package/dist/index.d.ts +7 -7
- package/dist/index.js +40 -58
- package/dist/shared/SetMinMaxDialog.d.ts +1 -2
- package/dist/shared/SetMinMaxDialog.js +12 -42
- package/dist/shared/SharedWiggleConfigSchema.d.ts +0 -26
- package/dist/shared/SharedWiggleConfigSchema.js +1 -30
- package/dist/shared/SharedWiggleMixin.d.ts +26 -231
- package/dist/shared/SharedWiggleMixin.js +24 -184
- package/dist/shared/YScaleBar.d.ts +1 -2
- package/dist/shared/YScaleBar.js +2 -5
- package/dist/util.d.ts +0 -28
- package/dist/util.js +1 -45
- package/esm/BigWigAdapter/BigWigAdapter.d.ts +4 -3
- package/esm/BigWigAdapter/BigWigAdapter.js +5 -10
- package/esm/BigWigAdapter/configSchema.d.ts +0 -9
- package/esm/BigWigAdapter/configSchema.js +1 -13
- package/esm/BigWigAdapter/index.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +2 -3
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +14 -26
- package/esm/CreateMultiWiggleExtension/index.d.ts +1 -1
- package/esm/CreateMultiWiggleExtension/index.js +26 -26
- package/esm/DensityRenderer/DensityRenderer.d.ts +2 -1
- package/esm/DensityRenderer/DensityRenderer.js +1 -1
- package/esm/DensityRenderer/configSchema.js +1 -7
- package/esm/DensityRenderer/index.d.ts +1 -1
- package/esm/DensityRenderer/index.js +1 -1
- package/esm/GuessAdapter/index.d.ts +2 -0
- package/esm/GuessAdapter/index.js +22 -0
- package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +3 -2
- package/esm/LinePlotRenderer/LinePlotRenderer.js +1 -1
- package/esm/LinePlotRenderer/configSchema.d.ts +0 -3
- package/esm/LinePlotRenderer/configSchema.js +1 -10
- package/esm/LinePlotRenderer/index.d.ts +1 -1
- package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +1 -2
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js +23 -36
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +3 -4
- package/esm/LinearWiggleDisplay/components/Tooltip.js +5 -18
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +12 -15
- package/esm/LinearWiggleDisplay/configSchema.d.ts +1 -12
- package/esm/LinearWiggleDisplay/configSchema.js +0 -15
- package/esm/LinearWiggleDisplay/index.d.ts +1 -1
- package/esm/LinearWiggleDisplay/index.js +1 -1
- package/esm/LinearWiggleDisplay/model.d.ts +44 -79
- package/esm/LinearWiggleDisplay/model.js +24 -66
- package/esm/LinearWiggleDisplay/renderSvg.d.ts +3 -4
- package/esm/LinearWiggleDisplay/renderSvg.js +2 -6
- package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +4 -3
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +5 -4
- package/esm/MultiDensityRenderer/configSchema.js +1 -7
- package/esm/MultiDensityRenderer/index.d.ts +1 -1
- package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +3 -2
- package/esm/MultiLineRenderer/MultiLineRenderer.js +1 -2
- package/esm/MultiLineRenderer/configSchema.d.ts +0 -6
- package/esm/MultiLineRenderer/configSchema.js +1 -13
- package/esm/MultiLineRenderer/index.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.d.ts +3 -5
- package/esm/MultiLinearWiggleDisplay/components/ColorLegend.js +5 -15
- package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.d.ts +7 -0
- package/esm/MultiLinearWiggleDisplay/components/FullHeightScaleBar.js +12 -0
- package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.d.ts +7 -0
- package/esm/MultiLinearWiggleDisplay/components/IndividualScaleBars.js +10 -0
- package/esm/MultiLinearWiggleDisplay/components/LegendItem.d.ts +11 -0
- package/esm/MultiLinearWiggleDisplay/components/LegendItem.js +14 -0
- package/esm/MultiLinearWiggleDisplay/components/RectBg.d.ts +1 -2
- package/esm/MultiLinearWiggleDisplay/components/RectBg.js +2 -2
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/ScoreLegend.js +3 -5
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +22 -38
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +64 -91
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +4 -5
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +8 -23
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +2 -4
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.d.ts +2 -3
- package/esm/MultiLinearWiggleDisplay/components/YScaleBars.js +8 -28
- package/esm/MultiLinearWiggleDisplay/components/util.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/components/util.js +1 -1
- package/esm/MultiLinearWiggleDisplay/configSchema.d.ts +1 -10
- package/esm/MultiLinearWiggleDisplay/configSchema.js +1 -19
- package/esm/MultiLinearWiggleDisplay/index.d.ts +1 -1
- package/esm/MultiLinearWiggleDisplay/index.js +1 -1
- package/esm/MultiLinearWiggleDisplay/model.d.ts +27 -146
- package/esm/MultiLinearWiggleDisplay/model.js +27 -121
- package/esm/MultiLinearWiggleDisplay/renderSvg.d.ts +3 -4
- package/esm/MultiLinearWiggleDisplay/renderSvg.js +2 -5
- package/esm/MultiLinearWiggleDisplay/util.d.ts +1 -0
- package/esm/MultiLinearWiggleDisplay/util.js +7 -0
- package/esm/MultiQuantitativeTrack/configSchema.d.ts +1 -1
- package/esm/MultiQuantitativeTrack/configSchema.js +1 -7
- package/esm/MultiQuantitativeTrack/index.d.ts +1 -1
- package/esm/MultiQuantitativeTrack/index.js +1 -1
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +3 -2
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +1 -2
- package/esm/MultiRowLineRenderer/configSchema.d.ts +0 -6
- package/esm/MultiRowLineRenderer/configSchema.js +2 -14
- package/esm/MultiRowLineRenderer/index.d.ts +1 -1
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +3 -2
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +1 -2
- package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/MultiRowXYPlotRenderer/configSchema.js +2 -20
- package/esm/MultiRowXYPlotRenderer/index.d.ts +1 -1
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +4 -3
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +9 -14
- package/esm/MultiWiggleAdapter/configSchema.d.ts +0 -6
- package/esm/MultiWiggleAdapter/configSchema.js +1 -10
- package/esm/MultiWiggleAdapter/index.d.ts +1 -1
- package/esm/MultiWiggleAdapter/index.js +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.d.ts +4 -4
- package/esm/MultiWiggleAddTrackWorkflow/AddTrackWorkflow.js +63 -80
- package/esm/MultiWiggleAddTrackWorkflow/index.d.ts +1 -1
- package/esm/MultiWiggleAddTrackWorkflow/index.js +1 -2
- package/esm/MultiWiggleRendering.d.ts +4 -5
- package/esm/MultiWiggleRendering.js +6 -6
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +3 -2
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +2 -3
- package/esm/MultiXYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/MultiXYPlotRenderer/configSchema.js +1 -19
- package/esm/MultiXYPlotRenderer/index.d.ts +1 -1
- package/esm/QuantitativeTrack/configSchema.d.ts +1 -1
- package/esm/QuantitativeTrack/configSchema.js +1 -7
- package/esm/QuantitativeTrack/index.d.ts +1 -1
- package/esm/QuantitativeTrack/index.js +1 -1
- package/esm/Tooltip.d.ts +2 -3
- package/esm/Tooltip.js +7 -11
- package/esm/WiggleBaseRenderer.d.ts +8 -11
- package/esm/WiggleBaseRenderer.js +0 -1
- package/esm/WiggleRPC/MultiWiggleGetSources.d.ts +5 -12
- package/esm/WiggleRPC/MultiWiggleGetSources.js +2 -29
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.d.ts +5 -7
- package/esm/WiggleRPC/WiggleGetGlobalQuantitativeStats.js +2 -15
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.d.ts +4 -11
- package/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js +2 -29
- package/esm/WiggleRendering.d.ts +3 -4
- package/esm/WiggleRendering.js +5 -7
- package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +3 -2
- package/esm/XYPlotRenderer/XYPlotRenderer.js +3 -5
- package/esm/XYPlotRenderer/configSchema.d.ts +0 -12
- package/esm/XYPlotRenderer/configSchema.js +2 -20
- package/esm/XYPlotRenderer/index.d.ts +1 -1
- package/esm/configSchema.d.ts +0 -18
- package/esm/configSchema.js +1 -23
- package/esm/drawDensity.d.ts +3 -3
- package/esm/drawDensity.js +1 -5
- package/esm/drawLine.d.ts +3 -3
- package/esm/drawLine.js +1 -6
- package/esm/drawXY.d.ts +4 -3
- package/esm/drawXY.js +29 -13
- package/esm/getMultiWiggleSourcesAutorun.d.ts +2 -2
- package/esm/getMultiWiggleSourcesAutorun.js +9 -6
- package/esm/getQuantitativeStats.d.ts +3 -3
- package/esm/getQuantitativeStats.js +3 -11
- package/esm/getQuantitativeStatsAutorun.d.ts +3 -3
- package/esm/getQuantitativeStatsAutorun.js +18 -20
- package/esm/index.d.ts +7 -7
- package/esm/index.js +14 -42
- package/esm/shared/SetMinMaxDialog.d.ts +1 -2
- package/esm/shared/SetMinMaxDialog.js +12 -19
- package/esm/shared/SharedWiggleConfigSchema.d.ts +0 -26
- package/esm/shared/SharedWiggleConfigSchema.js +1 -30
- package/esm/shared/SharedWiggleMixin.d.ts +26 -231
- package/esm/shared/SharedWiggleMixin.js +8 -178
- package/esm/shared/YScaleBar.d.ts +1 -2
- package/esm/shared/YScaleBar.js +2 -2
- package/esm/util.d.ts +0 -28
- package/esm/util.js +1 -45
- package/package.json +3 -6
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
- package/dist/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -66
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.d.ts +0 -6
- package/esm/MultiLinearWiggleDisplay/components/DraggableDialog.js +0 -38
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@@ -1,6 +1,7 @@
|
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import { BaseFeatureDataAdapter
|
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|
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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};
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}));
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// note: can't really have dis-agreeing refNames
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@@ -44,35 +43,31 @@ class MultiWiggleAdapter extends BaseAdapter_1.BaseFeatureDataAdapter {
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|
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return {
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scoreMin,
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scoreMax,
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|
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p.get('source')
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|
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? p
|
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|
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|
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|
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|
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|
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|
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}, opts.stopToken);
|
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}
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// always render bigwig instead of calculating a feature density for it
|
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|
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|
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featureDensity: 0,
|
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};
|
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}
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// in another adapter type, this could be dynamic depending on region or
|
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// something, but it is static for this particular multi-wiggle adapter type
|
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|
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|
|
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|
|
@@ -1,15 +1,9 @@
|
|
|
1
1
|
declare const MultiWiggleAdapter: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
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|
-
/**
|
|
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|
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* #slot
|
|
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*/
|
|
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subadapters: {
|
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6
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type: string;
|
|
7
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defaultValue: never[];
|
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description: string;
|
|
9
6
|
};
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|
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|
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/**
|
|
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|
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* #slot
|
|
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|
-
*/
|
|
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7
|
bigWigs: {
|
|
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8
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type: string;
|
|
15
9
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description: string;
|
|
@@ -1,22 +1,13 @@
|
|
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1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
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3
|
const configuration_1 = require("@jbrowse/core/configuration");
|
|
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|
-
|
|
5
|
-
* #config MultiWiggleAdapter
|
|
6
|
-
*/
|
|
7
|
-
function x() { } // eslint-disable-line @typescript-eslint/no-unused-vars
|
|
4
|
+
function x() { }
|
|
8
5
|
const MultiWiggleAdapter = (0, configuration_1.ConfigurationSchema)('MultiWiggleAdapter', {
|
|
9
|
-
/**
|
|
10
|
-
* #slot
|
|
11
|
-
*/
|
|
12
6
|
subadapters: {
|
|
13
7
|
type: 'frozen',
|
|
14
8
|
defaultValue: [],
|
|
15
9
|
description: 'array of subadapter JSON objects',
|
|
16
10
|
},
|
|
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|
-
/**
|
|
18
|
-
* #slot
|
|
19
|
-
*/
|
|
20
11
|
bigWigs: {
|
|
21
12
|
type: 'frozen',
|
|
22
13
|
description: 'array of bigwig filenames, alternative to the subadapters slot',
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
import PluginManager from '@jbrowse/core/PluginManager';
|
|
1
|
+
import type PluginManager from '@jbrowse/core/PluginManager';
|
|
2
2
|
export default function MultiWiggleAdapterF(pluginManager: PluginManager): void;
|
|
@@ -15,20 +15,30 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
|
|
|
15
15
|
}) : function(o, v) {
|
|
16
16
|
o["default"] = v;
|
|
17
17
|
});
|
|
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|
-
var __importStar = (this && this.__importStar) || function (
|
|
19
|
-
|
|
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|
-
|
|
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-
|
|
22
|
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|
|
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|
-
|
|
24
|
-
};
|
|
18
|
+
var __importStar = (this && this.__importStar) || (function () {
|
|
19
|
+
var ownKeys = function(o) {
|
|
20
|
+
ownKeys = Object.getOwnPropertyNames || function (o) {
|
|
21
|
+
var ar = [];
|
|
22
|
+
for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
|
|
23
|
+
return ar;
|
|
24
|
+
};
|
|
25
|
+
return ownKeys(o);
|
|
26
|
+
};
|
|
27
|
+
return function (mod) {
|
|
28
|
+
if (mod && mod.__esModule) return mod;
|
|
29
|
+
var result = {};
|
|
30
|
+
if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
|
|
31
|
+
__setModuleDefault(result, mod);
|
|
32
|
+
return result;
|
|
33
|
+
};
|
|
34
|
+
})();
|
|
25
35
|
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
26
36
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
27
37
|
};
|
|
28
38
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
29
39
|
exports.default = MultiWiggleAdapterF;
|
|
30
|
-
const configSchema_1 = __importDefault(require("./configSchema"));
|
|
31
40
|
const AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
|
|
41
|
+
const configSchema_1 = __importDefault(require("./configSchema"));
|
|
32
42
|
function MultiWiggleAdapterF(pluginManager) {
|
|
33
43
|
pluginManager.addAdapterType(() => new AdapterType_1.default({
|
|
34
44
|
name: 'MultiWiggleAdapter',
|
|
@@ -1,5 +1,5 @@
|
|
|
1
|
-
import
|
|
2
|
-
|
|
3
|
-
export default function MultiWiggleWidget({ model }: {
|
|
1
|
+
import type { AddTrackModel } from '@jbrowse/plugin-data-management';
|
|
2
|
+
declare const MultiWiggleAddTrackWorkflow: ({ model, }: {
|
|
4
3
|
model: AddTrackModel;
|
|
5
|
-
})
|
|
4
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
5
|
+
export default MultiWiggleAddTrackWorkflow;
|
|
@@ -1,34 +1,12 @@
|
|
|
1
1
|
"use strict";
|
|
2
|
-
var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
|
|
3
|
-
if (k2 === undefined) k2 = k;
|
|
4
|
-
var desc = Object.getOwnPropertyDescriptor(m, k);
|
|
5
|
-
if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
|
|
6
|
-
desc = { enumerable: true, get: function() { return m[k]; } };
|
|
7
|
-
}
|
|
8
|
-
Object.defineProperty(o, k2, desc);
|
|
9
|
-
}) : (function(o, m, k, k2) {
|
|
10
|
-
if (k2 === undefined) k2 = k;
|
|
11
|
-
o[k2] = m[k];
|
|
12
|
-
}));
|
|
13
|
-
var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
|
|
14
|
-
Object.defineProperty(o, "default", { enumerable: true, value: v });
|
|
15
|
-
}) : function(o, v) {
|
|
16
|
-
o["default"] = v;
|
|
17
|
-
});
|
|
18
|
-
var __importStar = (this && this.__importStar) || function (mod) {
|
|
19
|
-
if (mod && mod.__esModule) return mod;
|
|
20
|
-
var result = {};
|
|
21
|
-
if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
|
|
22
|
-
__setModuleDefault(result, mod);
|
|
23
|
-
return result;
|
|
24
|
-
};
|
|
25
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
26
|
-
|
|
27
|
-
const react_1 =
|
|
28
|
-
const material_1 = require("@mui/material");
|
|
29
|
-
const mui_1 = require("tss-react/mui");
|
|
3
|
+
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
4
|
+
const react_1 = require("react");
|
|
30
5
|
const util_1 = require("@jbrowse/core/util");
|
|
31
6
|
const tracks_1 = require("@jbrowse/core/util/tracks");
|
|
7
|
+
const material_1 = require("@mui/material");
|
|
8
|
+
const mobx_react_1 = require("mobx-react");
|
|
9
|
+
const mui_1 = require("tss-react/mui");
|
|
32
10
|
const useStyles = (0, mui_1.makeStyles)()(theme => ({
|
|
33
11
|
paper: {
|
|
34
12
|
margin: theme.spacing(),
|
|
@@ -40,7 +18,6 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
|
|
|
40
18
|
display: 'block',
|
|
41
19
|
},
|
|
42
20
|
}));
|
|
43
|
-
// on electron, use path to LocalFileLocation, on web, use the BlobLocation
|
|
44
21
|
function makeFileLocation(file) {
|
|
45
22
|
const { webUtils } = window.require('electron');
|
|
46
23
|
return util_1.isElectron
|
|
@@ -50,82 +27,64 @@ function makeFileLocation(file) {
|
|
|
50
27
|
}
|
|
51
28
|
: (0, tracks_1.storeBlobLocation)({ blob: file });
|
|
52
29
|
}
|
|
53
|
-
function
|
|
30
|
+
function doSubmit({ trackName, val, model, }) {
|
|
31
|
+
var _a;
|
|
32
|
+
const session = (0, util_1.getSession)(model);
|
|
33
|
+
try {
|
|
34
|
+
const trackId = [
|
|
35
|
+
`${trackName.toLowerCase().replaceAll(' ', '_')}-${Date.now()}`,
|
|
36
|
+
session.adminMode ? '' : '-sessionTrack',
|
|
37
|
+
].join('');
|
|
38
|
+
let bigWigs;
|
|
39
|
+
try {
|
|
40
|
+
bigWigs = JSON.parse(val);
|
|
41
|
+
}
|
|
42
|
+
catch (e) {
|
|
43
|
+
bigWigs = val
|
|
44
|
+
.split(/\n|\r\n|\r/)
|
|
45
|
+
.map(f => f.trim())
|
|
46
|
+
.filter(f => !!f);
|
|
47
|
+
}
|
|
48
|
+
const obj = typeof bigWigs[0] === 'string' ? { bigWigs } : { subadapters: bigWigs };
|
|
49
|
+
if ((0, util_1.isSessionWithAddTracks)(session)) {
|
|
50
|
+
session.addTrackConf({
|
|
51
|
+
trackId,
|
|
52
|
+
type: 'MultiQuantitativeTrack',
|
|
53
|
+
name: trackName,
|
|
54
|
+
assemblyNames: [model.assembly],
|
|
55
|
+
adapter: {
|
|
56
|
+
type: 'MultiWiggleAdapter',
|
|
57
|
+
...obj,
|
|
58
|
+
},
|
|
59
|
+
});
|
|
60
|
+
(_a = model.view) === null || _a === void 0 ? void 0 : _a.showTrack(trackId);
|
|
61
|
+
}
|
|
62
|
+
model.clearData();
|
|
63
|
+
if ((0, util_1.isSessionModelWithWidgets)(session)) {
|
|
64
|
+
session.hideWidget(model);
|
|
65
|
+
}
|
|
66
|
+
}
|
|
67
|
+
catch (e) {
|
|
68
|
+
console.error(e);
|
|
69
|
+
session.notifyError(`${e}`, e);
|
|
70
|
+
}
|
|
71
|
+
}
|
|
72
|
+
const MultiWiggleAddTrackWorkflow = (0, mobx_react_1.observer)(function ({ model, }) {
|
|
54
73
|
const { classes } = useStyles();
|
|
55
74
|
const [val, setVal] = (0, react_1.useState)('');
|
|
56
75
|
const [trackName, setTrackName] = (0, react_1.useState)(`MultiWiggle${+Date.now()}`);
|
|
57
|
-
return (
|
|
58
|
-
|
|
59
|
-
|
|
60
|
-
|
|
61
|
-
|
|
62
|
-
|
|
63
|
-
|
|
64
|
-
|
|
65
|
-
|
|
66
|
-
|
|
67
|
-
|
|
68
|
-
|
|
69
|
-
|
|
70
|
-
|
|
71
|
-
|
|
72
|
-
setVal(JSON.stringify(res, null, 2));
|
|
73
|
-
} })),
|
|
74
|
-
react_1.default.createElement(material_1.TextField, { value: trackName, helperText: "Track name", onChange: event => {
|
|
75
|
-
setTrackName(event.target.value);
|
|
76
|
-
} }),
|
|
77
|
-
react_1.default.createElement(material_1.Button, { variant: "contained", className: classes.submit, onClick: () => {
|
|
78
|
-
var _a;
|
|
79
|
-
const session = (0, util_1.getSession)(model);
|
|
80
|
-
try {
|
|
81
|
-
const trackId = [
|
|
82
|
-
`${trackName.toLowerCase().replaceAll(' ', '_')}-${Date.now()}`,
|
|
83
|
-
session.adminMode ? '' : '-sessionTrack',
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react_1.default.createElement("li", null, "Adding local files will update the textbox with JSON contents that are ready to submit with the \"Submit\" button"))));
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return ((0, jsx_runtime_1.jsxs)(material_1.Paper, { className: classes.paper, children: [(0, jsx_runtime_1.jsxs)("ul", { children: [(0, jsx_runtime_1.jsx)("li", { children: "Enter list of URLs for bigwig files in the textbox" }), (0, jsx_runtime_1.jsx)("li", { children: "Or, use the button below the text box to select files from your computer" })] }), (0, jsx_runtime_1.jsx)(material_1.TextField, { multiline: true, fullWidth: true, rows: 10, value: val, placeholder: "Paste list of URLs here, or use file selector below", variant: "outlined", onChange: event => {
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setVal(event.target.value);
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} }), (0, jsx_runtime_1.jsxs)(material_1.Button, { variant: "outlined", component: "label", children: ["Choose Files from your computer", (0, jsx_runtime_1.jsx)("input", { type: "file", hidden: true, multiple: true, onChange: ({ target }) => {
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setVal(JSON.stringify([...(target.files || [])].map(file => ({
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type: 'BigWigAdapter',
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bigWigLocation: makeFileLocation(file),
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source: file.name,
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})), null, 2));
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} })] }), (0, jsx_runtime_1.jsx)(material_1.TextField, { value: trackName, helperText: "Track name", onChange: event => {
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setTrackName(event.target.value);
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} }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", className: classes.submit, onClick: () => {
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doSubmit({ trackName, val, model });
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}, children: "Submit" }), (0, jsx_runtime_1.jsx)("p", { children: "Additional notes: " }), (0, jsx_runtime_1.jsxs)("ul", { children: [(0, jsx_runtime_1.jsxs)("li", { children: ["The list of bigwig files in the text box can be a list of URLs, or a list of elements like", ' ', (0, jsx_runtime_1.jsx)("code", { children: `[{"type":"BigWigAdapter","bigWigLocation":{"uri":"http://host/file.bw"}, "color":"green","source":"name for subtrack"}]` }), ' ', "to apply e.g. the color attribute to the view"] }), (0, jsx_runtime_1.jsx)("li", { children: "Adding local files will update the textbox with JSON contents that are ready to submit with the \"Submit\" button" })] })] }));
|
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|
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});
|
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|
+
exports.default = MultiWiggleAddTrackWorkflow;
|
|
@@ -1,2 +1,2 @@
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import PluginManager from '@jbrowse/core/PluginManager';
|
|
1
|
+
import type PluginManager from '@jbrowse/core/PluginManager';
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|
2
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|
export default function MultiWiggleAddTrackWorkflowF(pm: PluginManager): void;
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@@ -15,19 +15,28 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
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__setModuleDefault(result, mod);
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return result;
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};
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|
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})();
|
|
25
35
|
Object.defineProperty(exports, "__esModule", { value: true });
|
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|
exports.default = MultiWiggleAddTrackWorkflowF;
|
|
37
|
+
const react_1 = require("react");
|
|
27
38
|
const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
|
|
28
39
|
const mobx_state_tree_1 = require("mobx-state-tree");
|
|
29
|
-
// locals
|
|
30
|
-
const react_1 = require("react");
|
|
31
40
|
function MultiWiggleAddTrackWorkflowF(pm) {
|
|
32
41
|
pm.addAddTrackWorkflowType(() => new pluggableElementTypes_1.AddTrackWorkflowType({
|
|
33
42
|
name: 'Multi-wiggle track',
|
|
@@ -1,7 +1,6 @@
|
|
|
1
|
-
import
|
|
2
|
-
import {
|
|
3
|
-
import {
|
|
4
|
-
import { Source } from './util';
|
|
1
|
+
import type { Source } from './util';
|
|
2
|
+
import type { Feature } from '@jbrowse/core/util';
|
|
3
|
+
import type { Region } from '@jbrowse/core/util/types';
|
|
5
4
|
declare const MultiWiggleRendering: (props: {
|
|
6
5
|
regions: Region[];
|
|
7
6
|
features: Map<string, Feature>;
|
|
@@ -16,5 +15,5 @@ declare const MultiWiggleRendering: (props: {
|
|
|
16
15
|
onMouseLeave?: (event: React.MouseEvent) => void;
|
|
17
16
|
onMouseMove?: (event: React.MouseEvent, arg?: Feature) => void;
|
|
18
17
|
onFeatureClick?: (event: React.MouseEvent, arg?: Feature) => void;
|
|
19
|
-
}) =>
|
|
18
|
+
}) => import("react/jsx-runtime").JSX.Element;
|
|
20
19
|
export default MultiWiggleRendering;
|
|
@@ -1,32 +1,10 @@
|
|
|
1
1
|
"use strict";
|
|
2
|
-
var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
|
|
3
|
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if (k2 === undefined) k2 = k;
|
|
4
|
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var desc = Object.getOwnPropertyDescriptor(m, k);
|
|
5
|
-
if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
|
|
6
|
-
desc = { enumerable: true, get: function() { return m[k]; } };
|
|
7
|
-
}
|
|
8
|
-
Object.defineProperty(o, k2, desc);
|
|
9
|
-
}) : (function(o, m, k, k2) {
|
|
10
|
-
if (k2 === undefined) k2 = k;
|
|
11
|
-
o[k2] = m[k];
|
|
12
|
-
}));
|
|
13
|
-
var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
|
|
14
|
-
Object.defineProperty(o, "default", { enumerable: true, value: v });
|
|
15
|
-
}) : function(o, v) {
|
|
16
|
-
o["default"] = v;
|
|
17
|
-
});
|
|
18
|
-
var __importStar = (this && this.__importStar) || function (mod) {
|
|
19
|
-
if (mod && mod.__esModule) return mod;
|
|
20
|
-
var result = {};
|
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21
|
-
if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
|
|
22
|
-
__setModuleDefault(result, mod);
|
|
23
|
-
return result;
|
|
24
|
-
};
|
|
25
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
26
|
-
const
|
|
27
|
-
const react_1 =
|
|
28
|
-
const util_1 = require("@jbrowse/core/util");
|
|
3
|
+
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
4
|
+
const react_1 = require("react");
|
|
29
5
|
const ui_1 = require("@jbrowse/core/ui");
|
|
6
|
+
const util_1 = require("@jbrowse/core/util");
|
|
7
|
+
const mobx_react_1 = require("mobx-react");
|
|
30
8
|
const MultiWiggleRendering = (0, mobx_react_1.observer)(function (props) {
|
|
31
9
|
const { regions, features, bpPerPx, width, height, sources, onMouseLeave = () => { }, onMouseMove = () => { }, onFeatureClick = () => { }, displayModel, } = props;
|
|
32
10
|
const region = regions[0];
|
|
@@ -84,7 +62,7 @@ const MultiWiggleRendering = (0, mobx_react_1.observer)(function (props) {
|
|
|
84
62
|
}
|
|
85
63
|
return featureUnderMouse;
|
|
86
64
|
}
|
|
87
|
-
return (
|
|
65
|
+
return ((0, jsx_runtime_1.jsx)("div", { ref: ref, onMouseMove: event => {
|
|
88
66
|
const { clientX, clientY } = event;
|
|
89
67
|
const featureUnderMouse = getFeatureUnderMouse(clientX, clientY);
|
|
90
68
|
onMouseMove(event, featureUnderMouse);
|
|
@@ -98,7 +76,6 @@ const MultiWiggleRendering = (0, mobx_react_1.observer)(function (props) {
|
|
|
98
76
|
overflow: 'visible',
|
|
99
77
|
position: 'relative',
|
|
100
78
|
height,
|
|
101
|
-
} }
|
|
102
|
-
react_1.default.createElement(ui_1.PrerenderedCanvas, { ...props })));
|
|
79
|
+
}, children: (0, jsx_runtime_1.jsx)(ui_1.PrerenderedCanvas, { ...props }) }));
|
|
103
80
|
});
|
|
104
81
|
exports.default = MultiWiggleRendering;
|
|
@@ -1,5 +1,6 @@
|
|
|
1
|
-
import
|
|
2
|
-
import
|
|
1
|
+
import WiggleBaseRenderer from '../WiggleBaseRenderer';
|
|
2
|
+
import type { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
|
|
3
|
+
import type { Feature } from '@jbrowse/core/util';
|
|
3
4
|
export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
|
|
4
5
|
draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
|
|
5
6
|
reducedFeatures: Feature[];
|
|
@@ -1,21 +1,53 @@
|
|
|
1
1
|
"use strict";
|
|
2
|
+
var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
|
|
3
|
+
if (k2 === undefined) k2 = k;
|
|
4
|
+
var desc = Object.getOwnPropertyDescriptor(m, k);
|
|
5
|
+
if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
|
|
6
|
+
desc = { enumerable: true, get: function() { return m[k]; } };
|
|
7
|
+
}
|
|
8
|
+
Object.defineProperty(o, k2, desc);
|
|
9
|
+
}) : (function(o, m, k, k2) {
|
|
10
|
+
if (k2 === undefined) k2 = k;
|
|
11
|
+
o[k2] = m[k];
|
|
12
|
+
}));
|
|
13
|
+
var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
|
|
14
|
+
Object.defineProperty(o, "default", { enumerable: true, value: v });
|
|
15
|
+
}) : function(o, v) {
|
|
16
|
+
o["default"] = v;
|
|
17
|
+
});
|
|
18
|
+
var __importStar = (this && this.__importStar) || (function () {
|
|
19
|
+
var ownKeys = function(o) {
|
|
20
|
+
ownKeys = Object.getOwnPropertyNames || function (o) {
|
|
21
|
+
var ar = [];
|
|
22
|
+
for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
|
|
23
|
+
return ar;
|
|
24
|
+
};
|
|
25
|
+
return ownKeys(o);
|
|
26
|
+
};
|
|
27
|
+
return function (mod) {
|
|
28
|
+
if (mod && mod.__esModule) return mod;
|
|
29
|
+
var result = {};
|
|
30
|
+
if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
|
|
31
|
+
__setModuleDefault(result, mod);
|
|
32
|
+
return result;
|
|
33
|
+
};
|
|
34
|
+
})();
|
|
2
35
|
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
3
36
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
37
|
};
|
|
5
38
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
39
|
const util_1 = require("@jbrowse/core/util");
|
|
7
|
-
const drawXY_1 = require("../drawXY");
|
|
8
|
-
const util_2 = require("../util");
|
|
9
40
|
const WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
|
|
41
|
+
const util_2 = require("../util");
|
|
10
42
|
class MultiXYPlotRenderer extends WiggleBaseRenderer_1.default {
|
|
11
|
-
// @ts-expect-error
|
|
12
43
|
async draw(ctx, props) {
|
|
13
44
|
const { sources, features } = props;
|
|
14
45
|
const groups = (0, util_1.groupBy)(features.values(), f => f.get('source'));
|
|
46
|
+
const { drawXY } = await Promise.resolve().then(() => __importStar(require('../drawXY')));
|
|
15
47
|
let feats = [];
|
|
16
48
|
for (const source of sources) {
|
|
17
49
|
const features = groups[source.name] || [];
|
|
18
|
-
const { reducedFeatures } =
|
|
50
|
+
const { reducedFeatures } = drawXY(ctx, {
|
|
19
51
|
...props,
|
|
20
52
|
features,
|
|
21
53
|
offset: util_2.YSCALEBAR_LABEL_OFFSET,
|
|
@@ -1,31 +1,19 @@
|
|
|
1
1
|
declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2
|
-
/**
|
|
3
|
-
* #slot
|
|
4
|
-
*/
|
|
5
2
|
filled: {
|
|
6
3
|
type: string;
|
|
7
4
|
defaultValue: boolean;
|
|
8
5
|
};
|
|
9
|
-
/**
|
|
10
|
-
* #slot
|
|
11
|
-
*/
|
|
12
6
|
displayCrossHatches: {
|
|
13
7
|
type: string;
|
|
14
8
|
description: string;
|
|
15
9
|
defaultValue: boolean;
|
|
16
10
|
};
|
|
17
|
-
/**
|
|
18
|
-
* #slot
|
|
19
|
-
*/
|
|
20
11
|
summaryScoreMode: {
|
|
21
12
|
type: string;
|
|
22
13
|
model: import("mobx-state-tree").ISimpleType<string>;
|
|
23
14
|
description: string;
|
|
24
15
|
defaultValue: string;
|
|
25
16
|
};
|
|
26
|
-
/**
|
|
27
|
-
* #slot
|
|
28
|
-
*/
|
|
29
17
|
minSize: {
|
|
30
18
|
type: string;
|
|
31
19
|
defaultValue: number;
|