@jbrowse/plugin-wiggle 2.17.0 → 3.0.0

package/esm/shared/SharedWiggleMixin.d.ts

@@ -1,8 +1,5 @@
-import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
-import { Feature } from '@jbrowse/core/util';
-/**
- * #stateModel SharedWiggleMixin
- */
+import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import type { Feature } from '@jbrowse/core/util';
 export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
@@ -15,21 +12,12 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
 } & {
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
         reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     }, {
-        renderInProgress: AbortController | undefined;
+        stopToken: string | undefined;
         filled: boolean;
         reactElement: React.ReactElement | undefined;
         features: Map<string, Feature> | undefined;
@@ -45,25 +33,17 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
                 message: React.ReactNode;
                 filled?: boolean;
                 status?: string;
-                reactElement? /**
-                 * #property
-                 */: React.ReactElement;
+                reactElement?: React.ReactElement;
             };
-        }) => import("react").JSX.Element | undefined;
+        }) => import("react/jsx-runtime").JSX.Element | undefined;
         renderProps: any;
     } & {
         doReload(): void;
         afterAttach(): void;
         setStatus(message: string): void;
-        setLoading(abortController: AbortController): void;
+        setLoading(newStopToken: string): void;
         setMessage(messageText: string): void;
-        setRendered(props: {
-            reactElement: React.ReactElement;
-            features: Map<string, Feature>;
-            layout: any;
-            maxHeightReached: boolean;
-            renderProps: any;
-        } | undefined): void;
+        setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
         setError(error: unknown): void;
         reload(): void;
         beforeDestroy(): void;
@@ -97,64 +77,22 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
         };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
-    /**
-     * #property
-     */
     selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    /**
-     * #property
-     */
     resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-    /**
-     * #property
-     */
     fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
-    /**
-     * #property
-     */
     minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    /**
-     * #property
-     */
     color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    /**
-     * #property
-     */
     posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    /**
-     * #property
-     */
     negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    /**
-     * #property
-     */
     summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    /**
-     * #property
-     */
     rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    /**
-     * #property
-     */
     scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    /**
-     * #property
-     */
     autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    /**
-     * #property
-     */
     displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
-    /**
-     * #property
-     */
     constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
         max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
         min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
-    /**
-     * #property
-     */
     configuration: AnyConfigurationSchemaType;
 }, {
     rendererTypeName: string;
@@ -170,9 +108,7 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
             rendererTypeName: string;
             error: unknown;
             message: string | undefined;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree" /**
-         * #property
-         */).IModelType<{
+        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -195,9 +131,7 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
             message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree" /**
-             * #action
-             */).ISimpleType<string>;
+            type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
@@ -249,14 +183,15 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
     readonly regionTooLarge: boolean;
     readonly regionTooLargeReason: string;
 } & {
+    readonly statsReadyAndRegionNotTooLarge: boolean;
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
+    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
 } & {
     featureIdUnderMouse: undefined | string;
     contextMenuFeature: undefined | Feature;
 } & {
-    readonly DisplayMessageComponent: import("react").FC<any> | undefined;
-    readonly blockType: "dynamicBlocks" | "staticBlocks";
+    readonly DisplayMessageComponent: undefined | React.FC<any>;
+    readonly blockType: "staticBlocks" | "dynamicBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
     readonly renderDelay: number;
@@ -283,135 +218,47 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
     contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     renderProps(): any;
 } & {
-    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
     afterAttach(): void;
 } & {
-    /**
-     * #volatile
-     */
     message: undefined | string;
-    /**
-     * #volatile
-     */
     stats: {
         currStatsBpPerPx: number;
         scoreMin: number;
         scoreMax: number;
     } | undefined;
-    /**
-     * #volatile
-     */
-    statsFetchInProgress: undefined | AbortController;
-} & {
-    /**
-     * #action
-     */
+    statsFetchInProgress: undefined | string;
+} & {
     updateQuantitativeStats(stats: {
         currStatsBpPerPx: number;
         scoreMin: number;
         scoreMax: number;
     }): void;
-    /**
-     * #action
-     */
     setColor(color?: string): void;
-    /**
-     * #action
-     */
     setPosColor(color?: string): void;
-    /**
-     * #action
-     */
     setNegColor(color?: string): void;
-    /**
-     * #action
-     */
-    setStatsLoading(aborter: AbortController): void;
-    /**
-     * #action
-     * this overrides the BaseLinearDisplayModel to avoid popping up a
-     * feature detail display, but still sets the feature selection on the
-     * model so listeners can detect a click
-     */
+    setStatsLoading(arg?: string): void;
     selectFeature(feature: Feature): void;
-    /**
-     * #action
-     */
     setResolution(res: number): void;
-    /**
-     * #action
-     */
     setFill(fill: number): void;
-    /**
-     * #action
-     */
     toggleLogScale(): void;
-    /**
-     * #action
-     */
     setScaleType(scale?: string): void;
-    /**
-     * #action
-     */
     setSummaryScoreMode(val: string): void;
-    /**
-     * #action
-     */
     setAutoscale(val: string): void;
-    /**
-     * #action
-     */
     setMaxScore(val?: number): void;
-    /**
-     * #action
-     */
     setRendererType(val: string): void;
-    /**
-     * #action
-     */
     setMinScore(val?: number): void;
-    /**
-     * #action
-     */
     toggleCrossHatches(): void;
-    /**
-     * #action
-     */
     setCrossHatches(cross: boolean): void;
 } & {
-    /**
-     * #getter
-     */
     readonly adapterTypeName: any;
-    /**
-     * #getter
-     */
     readonly rendererTypeNameSimple: any;
-    /**
-     * #getter
-     * subclasses can define these, as snpcoverage track does
-     */
     readonly filters: undefined;
-    /**
-     * #getter
-     */
     readonly scaleType: any;
-    /**
-     * #getter
-     */
     readonly maxScore: any;
-    /**
-     * #getter
-     */
     readonly minScore: any;
 } & {
-    /**
-     * #getter
-     */
     readonly adapterCapabilities: string[];
-    /**
-     * #getter
-     */
     readonly rendererConfig: {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -420,32 +267,15 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
                 [x: string]: any;
-            } & import("mobx-state-tree/dist/internal" /**
-             * #property
-             */).NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
-    /**
-     * #getter
-     */
     readonly autoscaleType: any;
 } & {
-    /**
-     * #getter
-     */
     readonly domain: number[] | undefined;
 } & {
-    /**
-     * #getter
-     */
     readonly filled: boolean;
-    /**
-     * #getter
-     */
     readonly summaryScoreModeSetting: string;
-    /**
-     * #getter
-     */
     readonly scaleOpts: {
         domain: number[] | undefined;
         stats: {
@@ -457,26 +287,11 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
         scaleType: any;
         inverted: any;
     };
-    /**
-     * #getter
-     */
     readonly canHaveFill: boolean;
-    /**
-     * #getter
-     */
     readonly displayCrossHatchesSetting: boolean;
-    /**
-     * #getter
-     */
     readonly hasResolution: boolean;
-    /**
-     * #getter
-     */
     readonly hasGlobalStats: boolean;
 } & {
-    /**
-     * #method
-     */
     scoreTrackMenuItems(): ({
         label: string;
         subMenu: {
@@ -499,9 +314,6 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
         subMenu?: undefined;
     })[];
 } & {
-    /**
-     * #action
-     */
     reload(): Promise<void>;
 }, {
     type: string;
@@ -517,21 +329,12 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
 } & {
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
         reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
         isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     }, {
-        renderInProgress: AbortController | undefined;
+        stopToken: string | undefined;
         filled: boolean;
         reactElement: React.ReactElement | undefined;
         features: Map<string, Feature> | undefined;
@@ -547,25 +350,17 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
                 message: React.ReactNode;
                 filled?: boolean;
                 status?: string;
-                reactElement? /**
-                 * #property
-                 */: React.ReactElement;
+                reactElement?: React.ReactElement;
             };
-        }) => import("react").JSX.Element | undefined;
+        }) => import("react/jsx-runtime").JSX.Element | undefined;
         renderProps: any;
     } & {
         doReload(): void;
         afterAttach(): void;
         setStatus(message: string): void;
-        setLoading(abortController: AbortController): void;
+        setLoading(newStopToken: string): void;
         setMessage(messageText: string): void;
-        setRendered(props: {
-            reactElement: React.ReactElement;
-            features: Map<string, Feature>;
-            layout: any;
-            maxHeightReached: boolean;
-            renderProps: any;
-        } | undefined): void;
+        setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
         setError(error: unknown): void;
         reload(): void;
         beforeDestroy(): void;
@@ -602,8 +397,8 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
     id: string;
     type: string;
     configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
-    heightPreConfig: number | undefined;
     rpcDriverName: string | undefined;
+    heightPreConfig: number | undefined;
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;