@jbrowse/plugin-wiggle 1.7.11 → 2.1.0

package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"WiggleDisplayComponent.js","sourceRoot":"","sources":["../../../src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,gDAAyB;AACzB,2CAI2B;AAC3B,6DAAqD;AACrD,gFAG2C;AAC3C,yCAAqC;AAIrC,0DAAmC;AAqP1B,oBArPF,mBAAS,CAqPE;AAjPlB,IAAM,kBAAkB,GAAG,IAAI,CAAA;AAE/B,SAAS,SAAS,CAAC,KAAyB;IAClC,IAAA,aAAa,GAAK,KAAK,cAAV,CAAU;IACvB,IAAA,WAAW,GAAK,IAAA,wBAAiB,EAAC,KAAK,CAAQ,YAApC,CAAoC;IACvD,IAAM,KAAK,GAAG,IAAA,yBAAkB,EAAC,KAAK,CAAC,CAAA;IACvC,IAAM,SAAS,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,CAAA;IACxC,OAAO,WAAW,KAAK,aAAa,IAAI,CAAC,aAAa;QACpD,CAAC,CAAC,IAAA,kBAAW,EAAC,SAAS,EAAE,kBAAkB,CAAC,GAAG,GAAG;QAClD,CAAC,CAAC,EAAE,CAAA;AACR,CAAC;AAED,IAAM,OAAO,GAAG,IAAA,qBAAQ,EACtB,UAAC,EAQA;QAPC,QAAQ,cAAA,EACR,KAAK,WAAA,EACL,SAAS,eAAA;IAMT,IAAI,SAAS,EAAE;QACb,OAAO,8DAAG,QAAQ,CAAI,CAAA;KACvB;SAAM;QACG,IAAA,MAAM,GAAK,KAAK,OAAV,CAAU;QACxB,OAAO,CACL,uCACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,CAAC;gBACP,aAAa,EAAE,MAAM;gBACrB,MAAM,QAAA;gBACN,KAAK,EAAE,IAAI;aACZ,IAEA,QAAQ,CACL,CACP,CAAA;KACF;AACH,CAAC,CACF,CAAA;AAED,IAAM,MAAM,GAAG,UAAC,KAMf;IACS,IAAA,KAAmC,KAAK,MAAV,EAA9B,KAAK,mBAAG,sBAAsB,KAAA,CAAU;IAChD,OAAO,mDAAU,KAAK,IAAE,IAAI,EAAE,KAAK,IAAI,CAAA;AACzC,CAAC,CAAA;AAED,IAAM,WAAW,GAAG,IAAA,qBAAQ,EAAC,UAAC,EAAwC;QAAtC,KAAK,WAAA;IAC3B,IAAA,KAAK,GAAgB,KAAK,MAArB,EAAE,SAAS,GAAK,KAAK,UAAV,CAAU;IAC1B,IAAA,KAAK,GAAK,IAAA,wBAAiB,EAAC,KAAK,CAAQ,MAApC,CAAoC;IACjD,IAAM,MAAM,GACV,WAAI,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,cAAI,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,MAAG;QACzC,CAAC,SAAS,KAAK,KAAK,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,CAAA;IAC7C,IAAM,GAAG,GAAG,IAAA,kBAAW,EAAC,MAAM,EAAE,EAAE,CAAC,CAAA;IACnC,IAAM,OAAO,GAAG,EAAE,CAAA;IAClB,IAAM,IAAI,GAAG,KAAK,GAAG,GAAG,GAAG,OAAO,CAAA;IAClC,OAAO,CACL;QACE,8BAAC,MAAM,IAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,GAAG,GAAG,CAAC,EAAE,MAAM,EAAE,EAAE,GAAI;QACrD,wCAAM,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,IAAI,IACjB,MAAM,CACF,CACN,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,IAAM,WAAW,GAAG,IAAA,qBAAQ,EAC1B,UAAC,EAUA;QATC,KAAK,WAAA,EACL,SAAS,eAAA,EACT,UAAU,gBAAA,EACV,SAAS,eAAA;IAQP,IAAA,iBAAiB,GAMf,KAAK,kBANU,EACjB,aAAa,GAKX,KAAK,cALM,EACb,uBAAuB,GAIrB,KAAK,wBAJgB,EACvB,4BAA4B,GAG1B,KAAK,6BAHqB,EAC5B,gBAAgB,GAEd,KAAK,iBAFS,EAChB,OAAO,GACL,KAAK,QADA,CACA;IACT,IAAM,WAAW,GAAG,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,EAAE,CAAC,CAAA;IAC3C,IAAM,eAAe,GAAG,SAAS,GAAG,EAAE,CAAA;IACtC,IAAM,aAAa,GAAG,gBAAgB,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;IAC/C,IAAM,WAAW,GAAG,UAAU,GAAG,aAAa,GAAG,CAAC,CAAA;IAClD,IAAM,SAAS,GAAG,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAA;IACpC,IAAM,WAAW,GACf,SAAS,IAAI,CAAC,aAAa,IAAI,CAAC,4BAA4B,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IACxE,OAAO,OAAO,CAAC,CAAC,CAAC,CACf;QAEI,qCAAqC;QACrC,uBAAuB,CAAC,CAAC,CAAC,CACxB,8BAAC,MAAM,IACL,CAAC,EAAE,CAAC,EACJ,CAAC,EAAE,WAAW,EACd,KAAK,EAAE,WAAW,EAClB,MAAM,EAAE,CAAC,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,GAAG,SAAS,GAC3C,CACH,CAAC,CAAC,CAAC,IAAI;QAET,OAAO,CAAC,GAAG,CAAC,UAAC,MAAM,EAAE,GAAG;YACvB,IAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;YACzC,OAAO,CACL,8BAAC,eAAK,CAAC,QAAQ,IAAC,GAAG,EAAE,MAAM,CAAC,IAAI,GAAG,GAAG,GAAG,GAAG;gBACzC,CAAC,uBAAuB,CAAC,CAAC,CAAC,CAC1B,8BAAC,MAAM,IACL,CAAC,EAAE,GAAG,GAAG,SAAS,GAAG,CAAC,EACtB,CAAC,EAAE,WAAW,EACd,KAAK,EAAE,WAAW,EAClB,MAAM,EAAE,SAAS,GACjB,CACH,CAAC,CAAC,CAAC,IAAI;gBACP,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CACd,8BAAC,MAAM,IACL,CAAC,EAAE,GAAG,GAAG,SAAS,GAAG,CAAC,EACtB,CAAC,EAAE,WAAW,EACd,KAAK,EAAE,aAAa,EACpB,MAAM,EAAE,iBAAiB,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,EACjD,KAAK,EAAE,MAAM,CAAC,KAAK,GACnB,CACH,CAAC,CAAC,CAAC,IAAI;gBACP,eAAe,CAAC,CAAC,CAAC,CACjB,wCACE,CAAC,EAAE,GAAG,GAAG,SAAS,GAAG,EAAE,EACvB,CAAC,EAAE,WAAW,GAAG,aAAa,GAAG,CAAC,EAClC,QAAQ,EAAE,WAAW,IAEpB,MAAM,CAAC,IAAI,CACP,CACR,CAAC,CAAC,CAAC,IAAI,CACO,CAClB,CAAA;QACH,CAAC,CAAC,CACD,CACJ,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AAEY,QAAA,QAAQ,GAAG,IAAA,qBAAQ,EAC9B,UAAC,KAIA;IACS,IAAA,KAAK,GAA6B,KAAK,MAAlC,EAAE,WAAW,GAAgB,KAAK,YAArB,EAAE,SAAS,GAAK,KAAK,UAAV,CAAU;IAE7C,IAAA,KAAK,GAOH,KAAK,MAPF,EACL,iBAAiB,GAMf,KAAK,kBANU,EACjB,uBAAuB,GAKrB,KAAK,wBALgB,EACvB,4BAA4B,GAI1B,KAAK,6BAJqB,EAC5B,SAAS,GAGP,KAAK,UAHE,EACT,OAAO,GAEL,KAAK,QAFA,EACP,KAAK,GACH,KAAK,MADF,CACE;IACT,IAAM,WAAW,GAAG,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,EAAE,CAAC,CAAA;IAC3C,IAAM,eAAe,GAAG,SAAS,GAAG,EAAE,CAAA;IAC9B,IAAO,SAAS,GAAK,IAAA,wBAAiB,EAAC,KAAK,CAAQ,MAApC,CAAoC;IAC5D,IAAM,QAAQ,GAAG,EAAE,CAAA;IAEnB,IAAM,KAAK,GAAG,KAAK,IAAI,OAAO,CAAA;IAC9B,IAAI,CAAC,KAAK,EAAE;QACV,OAAO,IAAI,CAAA;KACZ;IAED,IAAM,UAAU,GAAG,IAAI,CAAC,GAAG,OAAR,IAAI,2BAClB,CAAC,OAAO;SACR,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,IAAA,kBAAW,EAAC,CAAC,CAAC,IAAI,EAAE,WAAW,CAAC,EAAhC,CAAgC,CAAC;SAC1C,GAAG,CAAC,UAAA,KAAK,IAAI,OAAA,CAAC,eAAe,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,QAAQ,CAAC,EAApC,CAAoC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,UAC9D,CAAA;IAED,OAAO,CACL,8BAAC,OAAO,eAAK,KAAK,GACf,uBAAuB,CAAC,CAAC,CAAC,CACzB;QACE,qCAAG,SAAS,EAAE,oBAAa,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,QAAK;YAC/D,8BAAC,mBAAS,IAAC,KAAK,EAAE,KAAK,EAAE,WAAW,EAAE,WAAW,GAAI,CACnD;QACJ,qCAAG,SAAS,EAAE,oBAAa,SAAS,GAAG,UAAU,GAAG,GAAG,QAAK;YAC1D,8BAAC,WAAW,IACV,SAAS,EAAE,SAAS,EACpB,KAAK,EAAE,KAAK,EACZ,SAAS,EAAE,EAAE,EACb,UAAU,EAAE,UAAU,GACtB,CACA,CACH,CACJ,CAAC,CAAC,CAAC,CACF;QACE,8BAAC,WAAW,IACV,SAAS,EAAE,SAAS,EACpB,KAAK,EAAE,KAAK,EACZ,SAAS,EAAE,KAAK,CAAC,SAAS,EAC1B,UAAU,EAAE,UAAU,GACtB;QAED,4BAA4B,IAAI,iBAAiB,CAAC,CAAC,CAAC,CACnD,8BAAC,WAAW,eAAK,KAAK,EAAI,CAC3B,CAAC,CAAC,CAAC,CACF,OAAO,CAAC,GAAG,CAAC,UAAC,OAAO,EAAE,GAAG,IAAK,OAAA,CAC5B,qCACE,SAAS,EAAE,sBAAe,SAAS,GAAG,GAAG,MAAG,EAC5C,GAAG,EAAE,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,GAAG,GAAG,GAAG,GAAG;YAEtC,8BAAC,mBAAS,IAAC,KAAK,EAAE,KAAK,EAAE,WAAW,EAAE,WAAW,GAAI,CACnD,CACL,EAP6B,CAO7B,CAAC,CACH,CACA,CACJ,CACO,CACX,CAAA;AACH,CAAC,CACF,CAAA;AAED,IAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAAC,UAAC,KAAoC;IAChE,IAAA,KAAK,GAAK,KAAK,MAAV,CAAU;IAEvB,OAAO,CACL;QACE,8BAAC,sDAA0B,eAAK,KAAK,EAAI;QACzC,8BAAC,gBAAQ,IAAC,KAAK,EAAE,KAAK,GAAI,CACtB,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,mBAAmB,CAAA"}

package/dist/MultiLinearWiggleDisplay/components/YScaleBar.d.ts

@@ -0,0 +1,7 @@
+/// <reference types="react" />
+import { WiggleDisplayModel } from '../models/model';
+declare const YScaleBar: ({ model, orientation, }: {
+    model: WiggleDisplayModel;
+    orientation?: string | undefined;
+}) => JSX.Element | null;
+export default YScaleBar;

package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js

@@ -0,0 +1,26 @@
+"use strict";
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importDefault(require("react"));
+var mobx_react_1 = require("mobx-react");
+var react_d3_axis_mod_1 = require("react-d3-axis-mod");
+var YScaleBar = (0, mobx_react_1.observer)(function (_a) {
+    var model = _a.model, orientation = _a.orientation;
+    var ticks = model.ticks;
+    return ticks ? (react_1.default.createElement(react_d3_axis_mod_1.Axis, __assign({}, ticks, { shadow: 2, format: function (n) { return n; }, style: { orient: orientation === 'left' ? react_d3_axis_mod_1.LEFT : react_d3_axis_mod_1.RIGHT } }))) : null;
+});
+exports.default = YScaleBar;
+//# sourceMappingURL=YScaleBar.js.map

package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"YScaleBar.js","sourceRoot":"","sources":["../../../src/MultiLinearWiggleDisplay/components/YScaleBar.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;AAAA,gDAAyB;AACzB,yCAAqC;AACrC,uDAAqD;AAGrD,IAAM,SAAS,GAAG,IAAA,qBAAQ,EACxB,UAAC,EAMA;QALC,KAAK,WAAA,EACL,WAAW,iBAAA;IAKH,IAAA,KAAK,GAAK,KAAK,MAAV,CAAU;IACvB,OAAO,KAAK,CAAC,CAAC,CAAC,CACb,8BAAC,wBAAI,eACC,KAAK,IACT,MAAM,EAAE,CAAC,EACT,MAAM,EAAE,UAAC,CAAS,IAAK,OAAA,CAAC,EAAD,CAAC,EACxB,KAAK,EAAE,EAAE,MAAM,EAAE,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,wBAAI,CAAC,CAAC,CAAC,yBAAK,EAAE,IACxD,CACH,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AACD,kBAAe,SAAS,CAAA"}

package/dist/MultiLinearWiggleDisplay/components/util.d.ts

@@ -0,0 +1,10 @@
+export declare function moveUp(arr: {
+    name: string;
+}[], sel: string[], by?: number): {
+    name: string;
+}[];
+export declare function moveDown(arr: {
+    name: string;
+}[], sel: string[], by?: number): {
+    name: string;
+}[];

package/dist/MultiLinearWiggleDisplay/components/util.js

@@ -0,0 +1,38 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.moveDown = exports.moveUp = void 0;
+function moveUp(arr, sel, by) {
+    if (by === void 0) { by = 1; }
+    var idxs = sel
+        .map(function (l) { return arr.findIndex(function (v) { return v.name === l; }); })
+        .sort(function (a, b) { return a - b; });
+    var lastIdx = 0;
+    for (var i = 0; i < idxs.length; i++) {
+        var old = idxs[i];
+        var idx = Math.max(lastIdx, old - by);
+        if (idx >= lastIdx) {
+            arr.splice(idx, 0, arr.splice(old, 1)[0]);
+        }
+        lastIdx = lastIdx + 1;
+    }
+    return arr;
+}
+exports.moveUp = moveUp;
+function moveDown(arr, sel, by) {
+    if (by === void 0) { by = 1; }
+    var idxs = sel
+        .map(function (l) { return arr.findIndex(function (v) { return v.name === l; }); })
+        .sort(function (a, b) { return b - a; });
+    var lastIdx = arr.length - 1;
+    for (var i = 0; i < idxs.length; i++) {
+        var old = idxs[i];
+        var idx = Math.min(lastIdx, old + by);
+        if (idx <= lastIdx) {
+            arr.splice(idx, 0, arr.splice(old, 1)[0]);
+        }
+        lastIdx = lastIdx - 1;
+    }
+    return arr;
+}
+exports.moveDown = moveDown;
+//# sourceMappingURL=util.js.map

package/dist/MultiLinearWiggleDisplay/components/util.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/MultiLinearWiggleDisplay/components/util.ts"],"names":[],"mappings":";;;AAAA,SAAgB,MAAM,CAAC,GAAuB,EAAE,GAAa,EAAE,EAAM;IAAN,mBAAA,EAAA,MAAM;IACnE,IAAM,IAAI,GAAG,GAAG;SACb,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,GAAG,CAAC,SAAS,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,KAAK,CAAC,EAAZ,CAAY,CAAC,EAAhC,CAAgC,CAAC;SAC1C,IAAI,CAAC,UAAC,CAAC,EAAE,CAAC,IAAK,OAAA,CAAC,GAAG,CAAC,EAAL,CAAK,CAAC,CAAA;IACxB,IAAI,OAAO,GAAG,CAAC,CAAA;IACf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QACpC,IAAM,GAAG,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;QACnB,IAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,GAAG,GAAG,EAAE,CAAC,CAAA;QACvC,IAAI,GAAG,IAAI,OAAO,EAAE;YAClB,GAAG,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;SAC1C;QACD,OAAO,GAAG,OAAO,GAAG,CAAC,CAAA;KACtB;IAED,OAAO,GAAG,CAAA;AACZ,CAAC;AAfD,wBAeC;AAED,SAAgB,QAAQ,CAAC,GAAuB,EAAE,GAAa,EAAE,EAAM;IAAN,mBAAA,EAAA,MAAM;IACrE,IAAM,IAAI,GAAG,GAAG;SACb,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,GAAG,CAAC,SAAS,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,KAAK,CAAC,EAAZ,CAAY,CAAC,EAAhC,CAAgC,CAAC;SAC1C,IAAI,CAAC,UAAC,CAAC,EAAE,CAAC,IAAK,OAAA,CAAC,GAAG,CAAC,EAAL,CAAK,CAAC,CAAA;IACxB,IAAI,OAAO,GAAG,GAAG,CAAC,MAAM,GAAG,CAAC,CAAA;IAC5B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;QACpC,IAAM,GAAG,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;QACnB,IAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,GAAG,GAAG,EAAE,CAAC,CAAA;QACvC,IAAI,GAAG,IAAI,OAAO,EAAE;YAClB,GAAG,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;SAC1C;QACD,OAAO,GAAG,OAAO,GAAG,CAAC,CAAA;KACtB;IAED,OAAO,GAAG,CAAA;AACZ,CAAC;AAfD,4BAeC"}

package/dist/MultiLinearWiggleDisplay/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/MultiLinearWiggleDisplay/index.js

@@ -0,0 +1,23 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var DisplayType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/DisplayType"));
+var configSchema_1 = __importDefault(require("./models/configSchema"));
+var model_1 = __importDefault(require("./models/model"));
+var WiggleDisplayComponent_1 = __importDefault(require("./components/WiggleDisplayComponent"));
+exports.default = (function (pluginManager) {
+    pluginManager.addDisplayType(function () {
+        var configSchema = (0, configSchema_1.default)(pluginManager);
+        return new DisplayType_1.default({
+            name: 'MultiLinearWiggleDisplay',
+            configSchema: configSchema,
+            stateModel: (0, model_1.default)(pluginManager, configSchema),
+            trackType: 'MultiQuantitativeTrack',
+            viewType: 'LinearGenomeView',
+            ReactComponent: WiggleDisplayComponent_1.default,
+        });
+    });
+});
+//# sourceMappingURL=index.js.map

package/dist/MultiLinearWiggleDisplay/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiLinearWiggleDisplay/index.ts"],"names":[],"mappings":";;;;;AACA,gGAAyE;AAEzE,uEAAuD;AACvD,yDAAyC;AACzC,+FAAgE;AAEhE,mBAAe,UAAC,aAA4B;IAC1C,aAAa,CAAC,cAAc,CAAC;QAC3B,IAAM,YAAY,GAAG,IAAA,sBAAmB,EAAC,aAAa,CAAC,CAAA;QACvD,OAAO,IAAI,qBAAW,CAAC;YACrB,IAAI,EAAE,0BAA0B;YAChC,YAAY,cAAA;YACZ,UAAU,EAAE,IAAA,eAAY,EAAC,aAAa,EAAE,YAAY,CAAC;YACrD,SAAS,EAAE,wBAAwB;YACnC,QAAQ,EAAE,kBAAkB;YAC5B,cAAc,kCAAA;SACf,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,EAAA"}

package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts

@@ -0,0 +1,2 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/dist/MultiLinearWiggleDisplay/models/configSchema.js

@@ -0,0 +1,77 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+var configuration_1 = require("@jbrowse/core/configuration");
+var plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
+var mobx_state_tree_1 = require("mobx-state-tree");
+function WiggleConfigFactory(pluginManager) {
+    var MultiXYPlotRendererConfigSchema = pluginManager.getRendererType('MultiXYPlotRenderer').configSchema;
+    var MultiDensityRendererConfigSchema = pluginManager.getRendererType('MultiDensityRenderer').configSchema;
+    var MultiRowXYPlotRendererConfigSchema = pluginManager.getRendererType('MultiRowXYPlotRenderer').configSchema;
+    var MultiLineRendererConfigSchema = pluginManager.getRendererType('MultiLineRenderer').configSchema;
+    var MultiRowLineRendererConfigSchema = pluginManager.getRendererType('MultiRowLineRenderer').configSchema;
+    return (0, configuration_1.ConfigurationSchema)('MultiLinearWiggleDisplay', {
+        autoscale: {
+            type: 'stringEnum',
+            defaultValue: 'local',
+            model: mobx_state_tree_1.types.enumeration('Autoscale type', [
+                'global',
+                'local',
+                'globalsd',
+                'localsd',
+                'zscore',
+            ]),
+            description: 'global/local using their min/max values or w/ standard deviations (globalsd/localsd)',
+        },
+        minimalTicks: {
+            type: 'boolean',
+            defaultValue: false,
+            description: 'use the minimal amount of ticks',
+        },
+        minScore: {
+            type: 'number',
+            defaultValue: Number.MIN_VALUE,
+            description: 'minimum value for the y-scale',
+        },
+        maxScore: {
+            type: 'number',
+            description: 'maximum value for the y-scale',
+            defaultValue: Number.MAX_VALUE,
+        },
+        numStdDev: {
+            type: 'number',
+            description: 'number of standard deviations to use for autoscale types globalsd or localsd',
+            defaultValue: 3,
+        },
+        scaleType: {
+            type: 'stringEnum',
+            model: mobx_state_tree_1.types.enumeration('Scale type', ['linear', 'log']),
+            description: 'The type of scale to use',
+            defaultValue: 'linear',
+        },
+        inverted: {
+            type: 'boolean',
+            description: 'draw upside down',
+            defaultValue: false,
+        },
+        defaultRendering: {
+            type: 'stringEnum',
+            model: mobx_state_tree_1.types.enumeration('Rendering', [
+                'multirowxy',
+                'xyplot',
+                'multirowdensity',
+                'multiline',
+                'multirowline',
+            ]),
+            defaultValue: 'multirowxy',
+        },
+        renderers: (0, configuration_1.ConfigurationSchema)('RenderersConfiguration', {
+            MultiXYPlotRenderer: MultiXYPlotRendererConfigSchema,
+            MultiDensityRenderer: MultiDensityRendererConfigSchema,
+            MultiRowXYPlotRenderer: MultiRowXYPlotRendererConfigSchema,
+            MultiLineRenderer: MultiLineRendererConfigSchema,
+            MultiRowLineRenderer: MultiRowLineRendererConfigSchema,
+        }),
+    }, { baseConfiguration: plugin_linear_genome_view_1.baseLinearDisplayConfigSchema, explicitlyTyped: true });
+}
+exports.default = WiggleConfigFactory;
+//# sourceMappingURL=configSchema.js.map

package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../../src/MultiLinearWiggleDisplay/models/configSchema.ts"],"names":[],"mappings":";;AAAA,6DAAiE;AACjE,gFAAkF;AAClF,mDAAuC;AAGvC,SAAwB,mBAAmB,CAAC,aAA4B;IACtE,IAAM,+BAA+B,GAAG,aAAa,CAAC,eAAe,CACnE,qBAAqB,CACtB,CAAC,YAAY,CAAA;IACd,IAAM,gCAAgC,GAAG,aAAa,CAAC,eAAe,CACpE,sBAAsB,CACvB,CAAC,YAAY,CAAA;IACd,IAAM,kCAAkC,GAAG,aAAa,CAAC,eAAe,CACtE,wBAAwB,CACzB,CAAC,YAAY,CAAA;IACd,IAAM,6BAA6B,GACjC,aAAa,CAAC,eAAe,CAAC,mBAAmB,CAAC,CAAC,YAAY,CAAA;IACjE,IAAM,gCAAgC,GAAG,aAAa,CAAC,eAAe,CACpE,sBAAsB,CACvB,CAAC,YAAY,CAAA;IAEd,OAAO,IAAA,mCAAmB,EACxB,0BAA0B,EAC1B;QACE,SAAS,EAAE;YACT,IAAI,EAAE,YAAY;YAClB,YAAY,EAAE,OAAO;YACrB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,gBAAgB,EAAE;gBACzC,QAAQ;gBACR,OAAO;gBACP,UAAU;gBACV,SAAS;gBACT,QAAQ;aACT,CAAC;YACF,WAAW,EACT,sFAAsF;SACzF;QACD,YAAY,EAAE;YACZ,IAAI,EAAE,SAAS;YACf,YAAY,EAAE,KAAK;YACnB,WAAW,EAAE,iCAAiC;SAC/C;QAED,QAAQ,EAAE;YACR,IAAI,EAAE,QAAQ;YACd,YAAY,EAAE,MAAM,CAAC,SAAS;YAC9B,WAAW,EAAE,+BAA+B;SAC7C;QACD,QAAQ,EAAE;YACR,IAAI,EAAE,QAAQ;YACd,WAAW,EAAE,+BAA+B;YAC5C,YAAY,EAAE,MAAM,CAAC,SAAS;SAC/B;QACD,SAAS,EAAE;YACT,IAAI,EAAE,QAAQ;YACd,WAAW,EACT,8EAA8E;YAChF,YAAY,EAAE,CAAC;SAChB;QACD,SAAS,EAAE;YACT,IAAI,EAAE,YAAY;YAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;YACzD,WAAW,EAAE,0BAA0B;YACvC,YAAY,EAAE,QAAQ;SACvB;QACD,QAAQ,EAAE;YACR,IAAI,EAAE,SAAS;YACf,WAAW,EAAE,kBAAkB;YAC/B,YAAY,EAAE,KAAK;SACpB;QAED,gBAAgB,EAAE;YAChB,IAAI,EAAE,YAAY;YAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,WAAW,EAAE;gBACpC,YAAY;gBACZ,QAAQ;gBACR,iBAAiB;gBACjB,WAAW;gBACX,cAAc;aACf,CAAC;YACF,YAAY,EAAE,YAAY;SAC3B;QAED,SAAS,EAAE,IAAA,mCAAmB,EAAC,wBAAwB,EAAE;YACvD,mBAAmB,EAAE,+BAA+B;YACpD,oBAAoB,EAAE,gCAAgC;YACtD,sBAAsB,EAAE,kCAAkC;YAC1D,iBAAiB,EAAE,6BAA6B;YAChD,oBAAoB,EAAE,gCAAgC;SACvD,CAAC;KACH,EACD,EAAE,iBAAiB,EAAE,yDAA6B,EAAE,eAAe,EAAE,IAAI,EAAE,CAC5E,CAAA;AACH,CAAC;AAxFD,sCAwFC"}

package/dist/MultiLinearWiggleDisplay/models/model.d.ts

@@ -0,0 +1,339 @@
+import React from 'react';
+import { Instance } from 'mobx-state-tree';
+import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import { Feature } from '@jbrowse/core/util';
+import PluginManager from '@jbrowse/core/PluginManager';
+interface Source {
+    name: string;
+    color?: string;
+    group?: string;
+}
+declare const stateModelFactory: (pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
+    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+} & {
+    height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+        key: import("mobx-state-tree").ISimpleType<string>;
+        region: import("mobx-state-tree").IModelType<{
+            refName: import("mobx-state-tree").ISimpleType<string>;
+            start: import("mobx-state-tree").ISimpleType<number>;
+            end: import("mobx-state-tree").ISimpleType<number>;
+            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        } & {
+            assemblyName: import("mobx-state-tree").ISimpleType<string>;
+        }, {
+            setRefName(newRefName: string): void;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    }, {
+        renderInProgress: AbortController | undefined;
+        filled: boolean;
+        reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
+        features: Map<string, Feature> | undefined;
+        layout: any;
+        status: string;
+        error: unknown;
+        message: string | undefined;
+        maxHeightReached: boolean;
+        ReactComponent: ({ model, }: {
+            model: any;
+        }) => any;
+        renderProps: any;
+    } & {
+        doReload(): void;
+        afterAttach(): void;
+        setStatus(message: string): void;
+        setLoading(abortController: AbortController): void;
+        setMessage(messageText: string): void;
+        setRendered(props: {
+            reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
+            features: Map<string, Feature>;
+            layout: any;
+            maxHeightReached: boolean;
+            renderProps: any;
+        } | undefined): void;
+        setError(error: unknown): void;
+        reload(): void;
+        beforeDestroy(): void;
+    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+} & {
+    type: import("mobx-state-tree").ISimpleType<"MultiLinearWiggleDisplay">;
+    configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
+    selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+    fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+    minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    height: import("mobx-state-tree").IType<number | undefined, number, number>;
+    color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+    layout: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<Source[], Source[], Source[]>, [undefined]>;
+    constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
+        max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+        min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
+}, {
+    rendererTypeName: string;
+    error: unknown;
+} & {
+    readonly RenderingComponent: React.FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        onHorizontalScroll?: Function | undefined;
+        blockState?: Record<string, any> | undefined;
+    }>;
+    readonly DisplayBlurb: React.FC<{
+        model: {
+            id: string;
+            type: string;
+            rpcDriverName: string | undefined;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            rendererTypeName: string;
+            error: unknown;
+        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    }> | null;
+    readonly adapterConfig: any;
+    readonly parentTrack: any;
+    renderProps(): any;
+    readonly rendererType: any;
+    readonly DisplayMessageComponent: React.FC<any> | undefined;
+    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
+    regionCannotBeRendered(): undefined;
+} & {
+    setError(error?: unknown): void;
+    setRpcDriverName(rpcDriverName: string): void;
+    reload(): void;
+} & {
+    currBpPerPx: number;
+    message: string;
+    featureIdUnderMouse: string | undefined;
+    contextMenuFeature: Feature | undefined;
+    scrollTop: number;
+    estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+    estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+} & {
+    readonly blockType: "dynamicBlocks" | "staticBlocks";
+    readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
+} & {
+    readonly renderDelay: number;
+    readonly TooltipComponent: React.FC<any>;
+    readonly selectedFeatureId: string | undefined;
+    readonly DisplayMessageComponent: React.FC<any> | undefined;
+} & {
+    readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
+    readonly featureUnderMouse: Feature | undefined;
+    getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+    getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
+    searchFeatureByID(id: string): [number, number, number, number] | undefined;
+    readonly currentBytesRequested: number;
+    readonly currentFeatureScreenDensity: number;
+    readonly maxFeatureScreenDensity: any;
+    readonly estimatedStatsReady: boolean;
+    readonly maxAllowableBytes: number;
+} & {
+    setMessage(message: string): void;
+    afterAttach(): void;
+    estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
+        headers?: Record<string, string> | undefined;
+        signal?: AbortSignal | undefined;
+        filters?: string[] | undefined;
+    }): Promise<{}>;
+    setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
+    setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+    clearRegionStats(): void;
+    setHeight(displayHeight: number): number;
+    resizeHeight(distance: number): number;
+    setScrollTop(scrollTop: number): void;
+    updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+    addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
+    setCurrBpPerPx(n: number): void;
+    deleteBlock(key: string): void;
+    selectFeature(feature: Feature): void;
+    clearFeatureSelection(): void;
+    setFeatureIdUnderMouse(feature: string | undefined): void;
+    reload(): void;
+    setContextMenuFeature(feature?: Feature | undefined): void;
+} & {
+    readonly regionTooLarge: boolean;
+    readonly regionTooLargeReason: string;
+} & {
+    reload(): Promise<void>;
+    afterAttach(): void;
+} & {
+    regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
+    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
+    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+    contextMenuItems(): {
+        label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
+        onClick: () => void;
+    }[];
+    renderProps(): any;
+} & {
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
+        overrideHeight: number;
+    }): Promise<JSX.Element>;
+} & {
+    statsReady: boolean;
+    message: string | undefined;
+    stats: {
+        scoreMin: number;
+        scoreMax: number;
+    };
+    statsRegion: string | undefined;
+    statsFetchInProgress: AbortController | undefined;
+    featureUnderMouseVolatile: Feature | undefined;
+    sourcesVolatile: Source[] | undefined;
+} & {
+    setLayout(layout: Source[]): void;
+    clearLayout(): void;
+    updateStats(stats: {
+        scoreMin: number;
+        scoreMax: number;
+    }): void;
+    setSources(sources: Source[]): void;
+    setColor(color: string): void;
+    setPosColor(color: string): void;
+    setNegColor(color: string): void;
+    setLoading(aborter: AbortController): void;
+    selectFeature(feature: Feature): void;
+    setFeatureUnderMouse(f?: Feature): void;
+    setResolution(res: number): void;
+    setFill(fill: number): void;
+    toggleLogScale(): void;
+    setScaleType(scale?: string): void;
+    setSummaryScoreMode(val: string): void;
+    setAutoscale(val: string): void;
+    setMaxScore(val?: number): void;
+    setRendererType(val: string): void;
+    setMinScore(val?: number): void;
+    toggleCrossHatches(): void;
+    setCrossHatches(cross: boolean): void;
+} & {
+    readonly featureUnderMouse: Feature | undefined;
+    readonly TooltipComponent: React.FC<{}>;
+    readonly adapterTypeName: any;
+    readonly rendererTypeNameSimple: any;
+    readonly rendererTypeName: string;
+    readonly filters: undefined;
+    readonly scaleType: string;
+    readonly maxScore: number;
+    readonly minScore: number;
+} & {
+    readonly rendererConfig: any;
+} & {
+    readonly needsScalebar: boolean;
+    readonly needsFullHeightScalebar: boolean;
+    readonly isMultiRow: boolean;
+    readonly needsCustomLegend: boolean;
+    readonly canHaveFill: boolean;
+    readonly renderColorBoxes: boolean;
+    readonly prefersOffset: boolean;
+    readonly sources: {
+        color: string;
+        name: string;
+        group?: string | undefined;
+    }[] | undefined;
+} & {
+    readonly filled: boolean;
+    readonly summaryScoreModeSetting: string;
+    readonly domain: number[];
+    readonly scaleOpts: {
+        autoscaleType: string;
+        domain: number[];
+        stats: {
+            scoreMin: number;
+            scoreMax: number;
+        };
+        scaleType: string;
+        inverted: any;
+    };
+    readonly autoscaleType: string;
+    readonly displayCrossHatchesSetting: boolean;
+    readonly rowHeight: number;
+    readonly rowHeightTooSmallForScalebar: boolean;
+    readonly useMinimalTicks: any;
+} & {
+    readonly ticks: {
+        range: number[];
+        values: number[];
+        format: (d: import("d3-scale").NumberValue) => string;
+        position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+    };
+    readonly colors: string[];
+    readonly adapterCapabilities: string[];
+} & {
+    renderProps(): any;
+    readonly hasResolution: boolean;
+    readonly hasGlobalStats: boolean;
+    readonly fillSetting: 2 | 1 | 0;
+} & {
+    trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+        label: string;
+        subMenu: {
+            label: string;
+            type: string;
+            checked: boolean;
+            onClick: () => void;
+        }[];
+        type?: undefined;
+        checked?: undefined;
+        onClick?: undefined;
+    } | {
+        type: string;
+        label: string;
+        checked: boolean;
+        onClick: () => void;
+        subMenu?: undefined;
+    })[];
+} & {
+    reload(): Promise<void>;
+    afterAttach(): void;
+    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
+        overrideHeight: number;
+    }): Promise<JSX.Element>;
+}, import("mobx-state-tree")._NotCustomized, {
+    type: string;
+    height: number;
+    id: string;
+    rpcDriverName: string | undefined;
+    userBpPerPxLimit: number | undefined;
+    userByteSizeLimit: number | undefined;
+} & import("mobx-state-tree")._NotCustomized>;
+export declare type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>;
+export declare type WiggleDisplayModel = Instance<WiggleDisplayStateModel>;
+export default stateModelFactory;