@jbrowse/plugin-wiggle 1.7.11 → 2.1.0

package/dist/util.js

@@ -1,18 +1,76 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.getNiceDomain = getNiceDomain;
-exports.getOrigin = getOrigin;
-exports.getScale = getScale;
-
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
-
-var _d3Scale = require("d3-scale");
-
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.round = exports.toP = exports.statsAutorun = exports.getStats = exports.groupBy = exports.getNiceDomain = exports.getOrigin = exports.getScale = exports.YSCALEBAR_LABEL_OFFSET = void 0;
+var d3_scale_1 = require("d3-scale");
+var mobx_1 = require("mobx");
+var util_1 = require("@jbrowse/core/util");
+var tracks_1 = require("@jbrowse/core/util/tracks");
+var mobx_state_tree_1 = require("mobx-state-tree");
+var configuration_1 = require("@jbrowse/core/configuration");
+exports.YSCALEBAR_LABEL_OFFSET = 5;
 /**
  * produces a d3-scale from arguments. applies a "nice domain" adjustment
  *
@@ -24,75 +82,60 @@ var _d3Scale = require("d3-scale");
  *   - pivotValue (number)
  *   - inverted (boolean)
  */
-function getScale(_ref) {
-  var _ref$domain = _ref.domain,
-      domain = _ref$domain === void 0 ? [] : _ref$domain,
-      _ref$range = _ref.range,
-      range = _ref$range === void 0 ? [] : _ref$range,
-      scaleType = _ref.scaleType,
-      pivotValue = _ref.pivotValue,
-      inverted = _ref.inverted;
-  var scale;
-
-  var _domain = (0, _slicedToArray2.default)(domain, 2),
-      min = _domain[0],
-      max = _domain[1];
-
-  if (min === undefined || max === undefined) {
-    throw new Error('invalid domain');
-  }
-
-  if (scaleType === 'linear') {
-    scale = (0, _d3Scale.scaleLinear)();
-  } else if (scaleType === 'log') {
-    scale = (0, _d3Scale.scaleLog)();
-    scale.base(2);
-  } else if (scaleType === 'quantize') {
-    scale = (0, _d3Scale.scaleQuantize)();
-  } else {
-    throw new Error('undefined scaleType');
-  }
-
-  scale.domain(pivotValue !== undefined ? [min, pivotValue, max] : [min, max]);
-  scale.nice();
-
-  var _range = (0, _slicedToArray2.default)(range, 2),
-      rangeMin = _range[0],
-      rangeMax = _range[1];
-
-  if (rangeMin === undefined || rangeMax === undefined) {
-    throw new Error('invalid range');
-  }
-
-  scale.range(inverted ? range.slice().reverse() : range);
-  return scale;
+function getScale(_a) {
+    var _b = _a.domain, domain = _b === void 0 ? [] : _b, _c = _a.range, range = _c === void 0 ? [] : _c, scaleType = _a.scaleType, pivotValue = _a.pivotValue, inverted = _a.inverted;
+    var scale;
+    var _d = __read(domain, 2), min = _d[0], max = _d[1];
+    if (min === undefined || max === undefined) {
+        throw new Error('invalid domain');
+    }
+    if (scaleType === 'linear') {
+        scale = (0, d3_scale_1.scaleLinear)();
+    }
+    else if (scaleType === 'log') {
+        scale = (0, d3_scale_1.scaleLog)();
+        scale.base(2);
+    }
+    else if (scaleType === 'quantize') {
+        scale = (0, d3_scale_1.scaleQuantize)();
+    }
+    else {
+        throw new Error('undefined scaleType');
+    }
+    scale.domain(pivotValue !== undefined ? [min, pivotValue, max] : [min, max]);
+    scale.nice();
+    var _e = __read(range, 2), rangeMin = _e[0], rangeMax = _e[1];
+    if (rangeMin === undefined || rangeMax === undefined) {
+        throw new Error('invalid range');
+    }
+    scale.range(inverted ? range.slice().reverse() : range);
+    return scale;
 }
+exports.getScale = getScale;
 /**
  * gets the origin for drawing the graph. for linear this is 0, for log this is arbitrarily set to log(1)==0
  *
  * @param scaleType -
  */
-
-
-function getOrigin(scaleType) {
-  // if (pivot) {
-  //   if (pivot === 'mean') {
-  //     return stats.scoreMean || 0
-  //   }
-  //   if (pivot === 'zero') {
-  //     return 0
-  //   }
-  //   return parseFloat()
-  // }
-  // if (scaleType === 'z_score') {
-  //   return stats.scoreMean || 0
-  // }
-  if (scaleType === 'log') {
-    return 1;
-  }
-
-  return 0;
+function getOrigin(scaleType /* , pivot, stats */) {
+    // if (pivot) {
+    //   if (pivot === 'mean') {
+    //     return stats.scoreMean || 0
+    //   }
+    //   if (pivot === 'zero') {
+    //     return 0
+    //   }
+    //   return parseFloat()
+    // }
+    // if (scaleType === 'z_score') {
+    //   return stats.scoreMean || 0
+    // }
+    if (scaleType === 'log') {
+        return 1;
+    }
+    return 0;
 }
+exports.getOrigin = getOrigin;
 /**
  * produces a "nice" domain that actually rounds down to 0 for the min
  * or 0 to the max depending on if all values are positive or negative
@@ -104,75 +147,159 @@ function getOrigin(scaleType) {
  *   - stddev
  *   - scaleType (linear or log)
  */
-
-
-function getNiceDomain(_ref2) {
-  var scaleType = _ref2.scaleType,
-      domain = _ref2.domain,
-      bounds = _ref2.bounds;
-
-  var _bounds = (0, _slicedToArray2.default)(bounds, 2),
-      minScore = _bounds[0],
-      maxScore = _bounds[1];
-
-  var _domain2 = (0, _slicedToArray2.default)(domain, 2),
-      min = _domain2[0],
-      max = _domain2[1];
-
-  if (scaleType === 'linear') {
-    if (max < 0) {
-      max = 0;
+function getNiceDomain(_a) {
+    var scaleType = _a.scaleType, domain = _a.domain, bounds = _a.bounds;
+    var _b = __read(bounds, 2), minScore = _b[0], maxScore = _b[1];
+    var _c = __read(domain, 2), min = _c[0], max = _c[1];
+    if (scaleType === 'linear') {
+        if (max < 0) {
+            max = 0;
+        }
+        if (min > 0) {
+            min = 0;
+        }
     }
-
-    if (min > 0) {
-      min = 0;
+    if (scaleType === 'log') {
+        // if the min is 0, assume that it's just something
+        // with no read coverage and that we should ignore it in calculations
+        // if it's greater than 1 pin to 1 for the full range also
+        // otherwise, we may see bigwigs with fractional values
+        if (min === 0 || min > 1) {
+            min = 1;
+        }
     }
-  }
-
-  if (scaleType === 'log') {
-    // if the min is 0, assume that it's just something
-    // with no read coverage and that we should ignore it in calculations
-    // if it's greater than 1 pin to 1 for the full range also
-    // otherwise, we may see bigwigs with fractional values
-    if (min === 0 || min > 1) {
-      min = 1;
+    if (min === undefined || max === undefined) {
+        throw new Error('invalid domain supplied to stats function');
     }
-  }
-
-  if (min === undefined || max === undefined) {
-    throw new Error('invalid domain supplied to stats function');
-  }
-
-  if (minScore !== undefined && minScore !== Number.MIN_VALUE) {
-    min = minScore;
-  }
-
-  if (maxScore !== undefined && maxScore !== Number.MAX_VALUE) {
-    max = maxScore;
-  }
-
-  var getScaleType = function getScaleType(type) {
-    if (type === 'linear') {
-      return (0, _d3Scale.scaleLinear)();
+    if (minScore !== undefined && minScore !== Number.MIN_VALUE) {
+        min = minScore;
     }
-
-    if (type === 'log') {
-      var _scale = (0, _d3Scale.scaleLog)();
-
-      _scale.base(2);
-
-      return _scale;
+    if (maxScore !== undefined && maxScore !== Number.MAX_VALUE) {
+        max = maxScore;
     }
-
-    if (type === 'quantize') {
-      return (0, _d3Scale.scaleQuantize)();
-    }
-
-    throw new Error("undefined scaleType ".concat(type));
-  };
-
-  var scale = getScaleType(scaleType);
-  scale.domain([min, max]);
-  scale.nice();
-  return scale.domain();
-}
+    var getScaleType = function (type) {
+        if (type === 'linear') {
+            return (0, d3_scale_1.scaleLinear)();
+        }
+        if (type === 'log') {
+            var scale_1 = (0, d3_scale_1.scaleLog)();
+            scale_1.base(2);
+            return scale_1;
+        }
+        if (type === 'quantize') {
+            return (0, d3_scale_1.scaleQuantize)();
+        }
+        throw new Error("undefined scaleType ".concat(type));
+    };
+    var scale = getScaleType(scaleType);
+    scale.domain([min, max]);
+    scale.nice();
+    return scale.domain();
+}
+exports.getNiceDomain = getNiceDomain;
+function groupBy(array, predicate) {
+    return array.reduce(function (acc, value) {
+        var _a;
+        var entry = (acc[_a = predicate(value)] || (acc[_a] = []));
+        entry.push(value);
+        return acc;
+    }, {});
+}
+exports.groupBy = groupBy;
+function getStats(self, opts) {
+    return __awaiter(this, void 0, void 0, function () {
+        var rpcManager, nd, adapterConfig, autoscaleType, sessionId, params, results, scoreMin, scoreMean, scoreStdDev, _a, dynamicBlocks, bpPerPx, results, scoreMin, scoreMean, scoreStdDev;
+        return __generator(this, function (_b) {
+            switch (_b.label) {
+                case 0:
+                    rpcManager = (0, util_1.getSession)(self).rpcManager;
+                    nd = (0, configuration_1.getConf)(self, 'numStdDev') || 3;
+                    adapterConfig = self.adapterConfig, autoscaleType = self.autoscaleType;
+                    sessionId = (0, tracks_1.getRpcSessionId)(self);
+                    params = __assign({ sessionId: sessionId, adapterConfig: adapterConfig, statusCallback: function (message) {
+                            if ((0, mobx_state_tree_1.isAlive)(self)) {
+                                self.setMessage(message);
+                            }
+                        } }, opts);
+                    if (!(autoscaleType === 'global' || autoscaleType === 'globalsd')) return [3 /*break*/, 2];
+                    return [4 /*yield*/, rpcManager.call(sessionId, 'WiggleGetGlobalStats', params)];
+                case 1:
+                    results = (_b.sent());
+                    scoreMin = results.scoreMin, scoreMean = results.scoreMean, scoreStdDev = results.scoreStdDev;
+                    // globalsd uses heuristic to avoid unnecessary scoreMin<0
+                    // if the scoreMin is never less than 0
+                    // helps with most coverage bigwigs just being >0
+                    return [2 /*return*/, autoscaleType === 'globalsd'
+                            ? __assign(__assign({}, results), { scoreMin: scoreMin >= 0 ? 0 : scoreMean - nd * scoreStdDev, scoreMax: scoreMean + nd * scoreStdDev }) : results];
+                case 2:
+                    if (!(autoscaleType === 'local' || autoscaleType === 'localsd')) return [3 /*break*/, 4];
+                    _a = (0, util_1.getContainingView)(self), dynamicBlocks = _a.dynamicBlocks, bpPerPx = _a.bpPerPx;
+                    return [4 /*yield*/, rpcManager.call(sessionId, 'WiggleGetMultiRegionStats', __assign(__assign({}, params), { regions: dynamicBlocks.contentBlocks.map(function (region) {
+                                var start = region.start, end = region.end;
+                                return __assign(__assign({}, JSON.parse(JSON.stringify(region))), { start: Math.floor(start), end: Math.ceil(end) });
+                            }), bpPerPx: bpPerPx }))];
+                case 3:
+                    results = (_b.sent());
+                    scoreMin = results.scoreMin, scoreMean = results.scoreMean, scoreStdDev = results.scoreStdDev;
+                    // localsd uses heuristic to avoid unnecessary scoreMin<0 if the
+                    // scoreMin is never less than 0 helps with most coverage bigwigs
+                    // just being >0
+                    return [2 /*return*/, autoscaleType === 'localsd'
+                            ? __assign(__assign({}, results), { scoreMin: scoreMin >= 0 ? 0 : scoreMean - nd * scoreStdDev, scoreMax: scoreMean + nd * scoreStdDev }) : results];
+                case 4:
+                    if (autoscaleType === 'zscale') {
+                        return [2 /*return*/, rpcManager.call(sessionId, 'WiggleGetGlobalStats', params)];
+                    }
+                    throw new Error("invalid autoscaleType '".concat(autoscaleType, "'"));
+            }
+        });
+    });
+}
+exports.getStats = getStats;
+function statsAutorun(self) {
+    var _this = this;
+    (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(function () { return __awaiter(_this, void 0, void 0, function () {
+        var aborter, view, statsRegion, wiggleStats, e_1;
+        return __generator(this, function (_a) {
+            switch (_a.label) {
+                case 0:
+                    _a.trys.push([0, 2, , 3]);
+                    aborter = new AbortController();
+                    view = (0, util_1.getContainingView)(self);
+                    self.setLoading(aborter);
+                    if (!view.initialized ||
+                        !self.estimatedStatsReady ||
+                        self.regionTooLarge) {
+                        return [2 /*return*/];
+                    }
+                    statsRegion = JSON.stringify(view.dynamicBlocks);
+                    return [4 /*yield*/, getStats(self, __assign({ signal: aborter.signal }, self.renderProps()))];
+                case 1:
+                    wiggleStats = _a.sent();
+                    if ((0, mobx_state_tree_1.isAlive)(self)) {
+                        self.updateStats(wiggleStats, statsRegion);
+                    }
+                    return [3 /*break*/, 3];
+                case 2:
+                    e_1 = _a.sent();
+                    if (!(0, util_1.isAbortException)(e_1) && (0, mobx_state_tree_1.isAlive)(self)) {
+                        console.error(e_1);
+                        self.setError(e_1);
+                    }
+                    return [3 /*break*/, 3];
+                case 3: return [2 /*return*/];
+            }
+        });
+    }); }, { delay: 1000 }));
+}
+exports.statsAutorun = statsAutorun;
+function toP(s) {
+    if (s === void 0) { s = 0; }
+    return +(+s).toPrecision(6);
+}
+exports.toP = toP;
+function round(value) {
+    return Math.round(value * 1e5) / 1e5;
+}
+exports.round = round;
+//# sourceMappingURL=util.js.map

package/dist/util.js.map

@@ -0,0 +1 @@
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package/esm/BigWigAdapter/BigWigAdapter.d.ts

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+import { BigWig } from '@gmod/bbi';
+import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { AugmentedRegion as Region } from '@jbrowse/core/util/types';
+import { Feature } from '@jbrowse/core/util';
+interface WiggleOptions extends BaseOptions {
+    resolution?: number;
+}
+export default class BigWigAdapter extends BaseFeatureDataAdapter {
+    private setupP?;
+    static capabilities: string[];
+    private setupPre;
+    setup(opts?: BaseOptions): Promise<{
+        bigwig: BigWig;
+        header: any;
+    }>;
+    getRefNames(opts?: BaseOptions): Promise<string[]>;
+    refIdToName(refId: number): Promise<any>;
+    getGlobalStats(opts?: BaseOptions): Promise<import("@jbrowse/core/util/stats").FeatureStats>;
+    getFeatures(region: Region, opts?: WiggleOptions): import("rxjs").Observable<Feature>;
+    estimateRegionsStats(_regions: Region[]): Promise<{
+        featureDensity: number;
+    }>;
+    freeResources(): void;
+}
+export {};

package/esm/BigWigAdapter/BigWigAdapter.js

@@ -0,0 +1,81 @@
+import { BigWig } from '@gmod/bbi';
+import { BaseFeatureDataAdapter, } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { openLocation } from '@jbrowse/core/util/io';
+import { updateStatus } from '@jbrowse/core/util';
+import { ObservableCreate } from '@jbrowse/core/util/rxjs';
+import { rectifyStats } from '@jbrowse/core/util/stats';
+export default class BigWigAdapter extends BaseFeatureDataAdapter {
+    async setupPre(opts) {
+        const { statusCallback = () => { } } = opts || {};
+        const bigwig = new BigWig({
+            filehandle: openLocation(this.getConf('bigWigLocation'), this.pluginManager),
+        });
+        const header = await updateStatus('Downloading bigwig header', statusCallback, () => bigwig.getHeader(opts));
+        return { bigwig, header };
+    }
+    async setup(opts) {
+        if (!this.setupP) {
+            this.setupP = this.setupPre(opts).catch(e => {
+                this.setupP = undefined;
+                throw e;
+            });
+        }
+        return this.setupP;
+    }
+    async getRefNames(opts) {
+        const { header: { refsByName }, } = await this.setup(opts);
+        return Object.keys(refsByName);
+    }
+    async refIdToName(refId) {
+        var _a;
+        const { header: { refsByNumber }, } = await this.setup();
+        return (_a = refsByNumber[refId]) === null || _a === void 0 ? void 0 : _a.name;
+    }
+    async getGlobalStats(opts) {
+        const { header: { totalSummary }, } = await this.setup(opts);
+        return rectifyStats(totalSummary);
+    }
+    getFeatures(region, opts = {}) {
+        const { refName, start, end } = region;
+        const { bpPerPx = 0, signal, resolution = 1, statusCallback = () => { }, } = opts;
+        return ObservableCreate(async (observer) => {
+            statusCallback('Downloading bigwig data');
+            const source = this.getConf('source');
+            const { bigwig } = await this.setup(opts);
+            const feats = await bigwig.getFeatures(refName, start, end, {
+                ...opts,
+                basesPerSpan: bpPerPx / resolution,
+            });
+            for (let i = 0; i < feats.length; i++) {
+                const data = feats[i];
+                if (source) {
+                    // @ts-ignore
+                    data.source = source;
+                }
+                const uniqueId = `${source}:${region.refName}:${data.start}-${data.end}`;
+                // @ts-ignore
+                data.refName = refName;
+                data.uniqueId = uniqueId;
+                observer.next({
+                    // @ts-ignore
+                    get: (str) => data[str],
+                    id: () => uniqueId,
+                    // @ts-ignore
+                    toJSON: () => data,
+                });
+            }
+            observer.complete();
+        }, signal);
+    }
+    // always render bigwig instead of calculating a feature density for it
+    async estimateRegionsStats(_regions) {
+        return { featureDensity: 0 };
+    }
+    freeResources() { }
+}
+BigWigAdapter.capabilities = [
+    'hasResolution',
+    'hasLocalStats',
+    'hasGlobalStats',
+];
+//# sourceMappingURL=BigWigAdapter.js.map

package/esm/BigWigAdapter/BigWigAdapter.js.map

@@ -0,0 +1 @@
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package/esm/BigWigAdapter/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/esm/BigWigAdapter/configSchema.js

@@ -0,0 +1,16 @@
+import { ConfigurationSchema } from '@jbrowse/core/configuration';
+export default ConfigurationSchema('BigWigAdapter', {
+    bigWigLocation: {
+        type: 'fileLocation',
+        defaultValue: {
+            uri: '/path/to/my.bw',
+            locationType: 'UriLocation',
+        },
+    },
+    source: {
+        type: 'string',
+        defaultValue: '',
+        description: 'Used for multiwiggle',
+    },
+}, { explicitlyTyped: true });
+//# sourceMappingURL=configSchema.js.map

package/esm/BigWigAdapter/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/BigWigAdapter/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,eAAe,mBAAmB,CAChC,eAAe,EACf;IACE,cAAc,EAAE;QACd,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,gBAAgB;YACrB,YAAY,EAAE,aAAa;SAC5B;KACF;IACD,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,sBAAsB;KACpC;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}

package/esm/BigWigAdapter/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/esm/BigWigAdapter/index.js

@@ -0,0 +1,15 @@
+import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType';
+import configSchema from './configSchema';
+export default (pluginManager) => {
+    pluginManager.addAdapterType(() => new AdapterType({
+        name: 'BigWigAdapter',
+        configSchema,
+        adapterCapabilities: [
+            'hasResolution',
+            'hasLocalStats',
+            'hasGlobalStats',
+        ],
+        getAdapterClass: () => import('./BigWigAdapter').then(r => r.default),
+    }));
+};
+//# sourceMappingURL=index.js.map

package/esm/BigWigAdapter/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":"AACA,OAAO,WAAW,MAAM,iDAAiD,CAAA;AACzE,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,cAAc,CAC1B,GAAG,EAAE,CACH,IAAI,WAAW,CAAC;QACd,IAAI,EAAE,eAAe;QACrB,YAAY;QACZ,mBAAmB,EAAE;YACnB,eAAe;YACf,eAAe;YACf,gBAAgB;SACjB;QACD,eAAe,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,iBAAiB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC;KACtE,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}

package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts

@@ -0,0 +1,9 @@
+/// <reference types="react" />
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+declare const ConfirmDialog: ({ tracks, onClose, }: {
+    tracks: AnyConfigurationModel[];
+    onClose: (arg: boolean, arg1?: {
+        name: string;
+    }) => void;
+}) => JSX.Element;
+export default ConfirmDialog;