@jbrowse/plugin-wiggle 1.7.11 → 2.1.0

package/esm/index.d.ts

@@ -0,0 +1,975 @@
+/// <reference types="react" />
+import Plugin from '@jbrowse/core/Plugin';
+import PluginManager from '@jbrowse/core/PluginManager';
+import WiggleBaseRenderer from './WiggleBaseRenderer';
+import WiggleRendering from './WiggleRendering';
+import * as utils from './util';
+import { ReactComponent as LinearWiggleDisplayReactComponent, modelFactory as linearWiggleDisplayModelFactory, Tooltip } from './LinearWiggleDisplay';
+import { TooltipContentsComponent } from './Tooltip';
+import { XYPlotRenderer } from './XYPlotRenderer';
+export default class WigglePlugin extends Plugin {
+    name: string;
+    install(pm: PluginManager): void;
+    exports: {
+        LinearWiggleDisplayReactComponent: (props: {
+            model: {
+                id: string;
+                type: "LinearWiggleDisplay";
+                rpcDriverName: string | undefined;
+                height: number;
+                blockState: import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IModelType<{
+                    key: import("mobx-state-tree").ISimpleType<string>;
+                    region: import("mobx-state-tree").IModelType<{
+                        refName: import("mobx-state-tree").ISimpleType<string>;
+                        start: import("mobx-state-tree").ISimpleType<number>;
+                        end: import("mobx-state-tree").ISimpleType<number>;
+                        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                    } & {
+                        assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                    }, {
+                        setRefName(newRefName: string): void;
+                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+                    reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+                    isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                    isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                }, {
+                    renderInProgress: AbortController | undefined;
+                    filled: boolean;
+                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+                    features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
+                    layout: any;
+                    status: string;
+                    error: unknown;
+                    message: string | undefined;
+                    maxHeightReached: boolean;
+                    ReactComponent: ({ model, }: {
+                        model: any;
+                    }) => any;
+                    renderProps: any;
+                } & {
+                    doReload(): void;
+                    afterAttach(): void;
+                    setStatus(message: string): void;
+                    setLoading(abortController: AbortController): void;
+                    setMessage(messageText: string): void;
+                    setRendered(props: {
+                        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
+                        features: Map<string, import("@jbrowse/core/util").Feature>;
+                        layout: any;
+                        maxHeightReached: boolean;
+                        renderProps: any;
+                    } | undefined): void;
+                    setError(error: unknown): void;
+                    reload(): void;
+                    beforeDestroy(): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+                    key: import("mobx-state-tree").ISimpleType<string>;
+                    region: import("mobx-state-tree").IModelType<{
+                        refName: import("mobx-state-tree").ISimpleType<string>;
+                        start: import("mobx-state-tree").ISimpleType<number>;
+                        end: import("mobx-state-tree").ISimpleType<number>;
+                        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                    } & {
+                        assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                    }, {
+                        setRefName(newRefName: string): void;
+                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+                    reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+                    isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                    isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                }, {
+                    renderInProgress: AbortController | undefined;
+                    filled: boolean;
+                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+                    features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
+                    layout: any;
+                    status: string;
+                    error: unknown;
+                    message: string | undefined;
+                    maxHeightReached: boolean;
+                    ReactComponent: ({ model, }: {
+                        model: any;
+                    }) => any;
+                    renderProps: any;
+                } & {
+                    doReload(): void;
+                    afterAttach(): void;
+                    setStatus(message: string): void;
+                    setLoading(abortController: AbortController): void;
+                    setMessage(messageText: string): void;
+                    setRendered(props: {
+                        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
+                        features: Map<string, import("@jbrowse/core/util").Feature>;
+                        layout: any;
+                        maxHeightReached: boolean;
+                        renderProps: any;
+                    } | undefined): void;
+                    setError(error: unknown): void;
+                    reload(): void;
+                    beforeDestroy(): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
+                userBpPerPxLimit: number | undefined;
+                userByteSizeLimit: number | undefined;
+                configuration: any;
+                selectedRendering: string;
+                resolution: number;
+                fill: boolean | undefined;
+                minSize: number | undefined;
+                color: string | undefined;
+                posColor: string | undefined;
+                negColor: string | undefined;
+                summaryScoreMode: string | undefined;
+                rendererTypeNameState: string | undefined;
+                scale: string | undefined;
+                autoscale: string | undefined;
+                displayCrossHatches: boolean | undefined;
+                constraints: {
+                    max: number | undefined;
+                    min: number | undefined;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
+                    max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                    min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                rendererTypeName: string;
+                error: unknown;
+            } & {
+                readonly RenderingComponent: import("react").FC<{
+                    model: {
+                        id: string;
+                        type: string;
+                        rpcDriverName: string | undefined;
+                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                        rendererTypeName: string;
+                        error: unknown;
+                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                        type: import("mobx-state-tree").ISimpleType<string>;
+                        rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+                    }, {
+                        rendererTypeName: string;
+                        error: unknown;
+                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                    onHorizontalScroll?: Function | undefined;
+                    blockState?: Record<string, any> | undefined;
+                }>;
+                readonly DisplayBlurb: import("react").FC<{
+                    model: {
+                        id: string;
+                        type: string;
+                        rpcDriverName: string | undefined;
+                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                        rendererTypeName: string;
+                        error: unknown;
+                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                        type: import("mobx-state-tree").ISimpleType<string>;
+                        rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+                    }, {
+                        rendererTypeName: string;
+                        error: unknown;
+                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                }> | null;
+                readonly adapterConfig: any;
+                readonly parentTrack: any;
+                renderProps(): any;
+                readonly rendererType: any;
+                readonly DisplayMessageComponent: import("react").FC<any> | undefined;
+                trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+                readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
+                regionCannotBeRendered(): undefined;
+            } & {
+                setError(error?: unknown): void;
+                setRpcDriverName(rpcDriverName: string): void;
+                reload(): void;
+            } & {
+                currBpPerPx: number;
+                message: string;
+                featureIdUnderMouse: string | undefined;
+                contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
+                scrollTop: number;
+                estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+                estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+            } & {
+                readonly blockType: "dynamicBlocks" | "staticBlocks";
+                readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
+            } & {
+                readonly renderDelay: number;
+                readonly TooltipComponent: import("react").FC<any>;
+                readonly selectedFeatureId: string | undefined;
+                readonly DisplayMessageComponent: import("react").FC<any> | undefined;
+            } & {
+                readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
+                readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
+                getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+                getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
+                searchFeatureByID(id: string): [number, number, number, number] | undefined;
+                readonly currentBytesRequested: number;
+                readonly currentFeatureScreenDensity: number;
+                readonly maxFeatureScreenDensity: any;
+                readonly estimatedStatsReady: boolean;
+                readonly maxAllowableBytes: number;
+            } & {
+                setMessage(message: string): void;
+                afterAttach(): void;
+                estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
+                    headers?: Record<string, string> | undefined;
+                    signal?: AbortSignal | undefined;
+                    filters?: string[] | undefined;
+                }): Promise<{}>;
+                setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
+                setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+                clearRegionStats(): void;
+                setHeight(displayHeight: number): number;
+                resizeHeight(distance: number): number;
+                setScrollTop(scrollTop: number): void;
+                updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+                addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
+                setCurrBpPerPx(n: number): void;
+                deleteBlock(key: string): void;
+                selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+                clearFeatureSelection(): void;
+                setFeatureIdUnderMouse(feature: string | undefined): void;
+                reload(): void;
+                setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
+            } & {
+                readonly regionTooLarge: boolean;
+                readonly regionTooLargeReason: string;
+            } & {
+                reload(): Promise<void>;
+                afterAttach(): void;
+            } & {
+                regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
+                regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
+                trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+                contextMenuItems(): {
+                    label: string;
+                    icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+                        muiName: string;
+                    };
+                    onClick: () => void;
+                }[];
+                renderProps(): any;
+            } & {
+                renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
+                    overrideHeight: number;
+                }): Promise<JSX.Element>;
+            } & {
+                statsReady: boolean;
+                message: string | undefined;
+                stats: {
+                    scoreMin: number;
+                    scoreMax: number;
+                };
+                statsFetchInProgress: AbortController | undefined;
+            } & {
+                updateStats(stats: {
+                    scoreMin: number;
+                    scoreMax: number;
+                }): void;
+                setColor(color: string): void;
+                setPosColor(color: string): void;
+                setNegColor(color: string): void;
+                setLoading(aborter: AbortController): void;
+                selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+                setResolution(res: number): void;
+                setFill(fill: number): void;
+                toggleLogScale(): void;
+                setScaleType(scale?: string | undefined): void;
+                setSummaryScoreMode(val: string): void;
+                setAutoscale(val: string): void;
+                setMaxScore(val?: number | undefined): void;
+                setRendererType(val: string): void;
+                setMinScore(val?: number | undefined): void;
+                toggleCrossHatches(): void;
+                setCrossHatches(cross: boolean): void;
+            } & {
+                readonly TooltipComponent: import("react").FC<{}>;
+                readonly adapterTypeName: any;
+                readonly rendererTypeNameSimple: any;
+                readonly rendererTypeName: string;
+                readonly filters: undefined;
+                readonly scaleType: any;
+                readonly maxScore: any;
+                readonly minScore: any;
+            } & {
+                readonly rendererConfig: any;
+            } & {
+                readonly filled: any;
+                readonly summaryScoreModeSetting: any;
+                readonly domain: number[];
+                readonly needsScalebar: boolean;
+                readonly scaleOpts: {
+                    domain: number[];
+                    stats: {
+                        scoreMin: number;
+                        scoreMax: number;
+                    };
+                    autoscaleType: any;
+                    scaleType: any;
+                    inverted: any;
+                };
+                readonly canHaveFill: boolean;
+                readonly autoscaleType: any;
+                readonly displayCrossHatchesSetting: any;
+            } & {
+                readonly ticks: {
+                    range: number[];
+                    values: number[];
+                    format: (d: import("d3-scale").NumberValue) => string;
+                    position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+                };
+                readonly adapterCapabilities: string[];
+            } & {
+                renderProps(): any;
+                readonly hasResolution: boolean;
+                readonly hasGlobalStats: boolean;
+                readonly fillSetting: 2 | 1 | 0;
+            } & {
+                trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+                    label: string;
+                    subMenu: {
+                        label: string;
+                        type: string;
+                        checked: boolean;
+                        onClick: () => void;
+                    }[];
+                    type?: undefined;
+                    checked?: undefined;
+                    onClick?: undefined;
+                } | {
+                    type: string;
+                    label: string;
+                    checked: any;
+                    onClick: () => void;
+                    subMenu?: undefined;
+                })[];
+            } & {
+                reload(): Promise<void>;
+                afterAttach(): void;
+                renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
+                    overrideHeight: number;
+                }): Promise<JSX.Element>;
+            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                type: import("mobx-state-tree").ISimpleType<string>;
+                rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            } & {
+                height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+                blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+                    key: import("mobx-state-tree").ISimpleType<string>;
+                    region: import("mobx-state-tree").IModelType<{
+                        refName: import("mobx-state-tree").ISimpleType<string>;
+                        start: import("mobx-state-tree").ISimpleType<number>;
+                        end: import("mobx-state-tree").ISimpleType<number>;
+                        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                    } & {
+                        assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                    }, {
+                        setRefName(newRefName: string): void;
+                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+                    reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+                    isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                    isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                }, {
+                    renderInProgress: AbortController | undefined;
+                    filled: boolean;
+                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+                    features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
+                    layout: any;
+                    status: string;
+                    error: unknown;
+                    message: string | undefined;
+                    maxHeightReached: boolean;
+                    ReactComponent: ({ model, }: {
+                        model: any;
+                    }) => any;
+                    renderProps: any;
+                } & {
+                    doReload(): void;
+                    afterAttach(): void;
+                    setStatus(message: string): void;
+                    setLoading(abortController: AbortController): void;
+                    setMessage(messageText: string): void;
+                    setRendered(props: {
+                        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
+                        features: Map<string, import("@jbrowse/core/util").Feature>;
+                        layout: any;
+                        maxHeightReached: boolean;
+                        renderProps: any;
+                    } | undefined): void;
+                    setError(error: unknown): void;
+                    reload(): void;
+                    beforeDestroy(): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            } & {
+                type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
+                configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
+                selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+                fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+                minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+                posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+                negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+                summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+                rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+                scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+                autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+                displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+                constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
+                    max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                    min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
+            }, {
+                rendererTypeName: string;
+                error: unknown;
+            } & {
+                readonly RenderingComponent: import("react").FC<{
+                    model: {
+                        id: string;
+                        type: string;
+                        rpcDriverName: string | undefined;
+                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                        rendererTypeName: string;
+                        error: unknown;
+                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                        type: import("mobx-state-tree").ISimpleType<string>;
+                        rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+                    }, {
+                        rendererTypeName: string;
+                        error: unknown;
+                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                    onHorizontalScroll?: Function | undefined;
+                    blockState?: Record<string, any> | undefined;
+                }>;
+                readonly DisplayBlurb: import("react").FC<{
+                    model: {
+                        id: string;
+                        type: string;
+                        rpcDriverName: string | undefined;
+                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                        rendererTypeName: string;
+                        error: unknown;
+                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                        type: import("mobx-state-tree").ISimpleType<string>;
+                        rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+                    }, {
+                        rendererTypeName: string;
+                        error: unknown;
+                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                }> | null;
+                readonly adapterConfig: any;
+                readonly parentTrack: any;
+                renderProps(): any;
+                readonly rendererType: any;
+                readonly DisplayMessageComponent: import("react").FC<any> | undefined;
+                trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+                readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
+                regionCannotBeRendered(): undefined;
+            } & {
+                setError(error?: unknown): void;
+                setRpcDriverName(rpcDriverName: string): void;
+                reload(): void;
+            } & {
+                currBpPerPx: number;
+                message: string;
+                featureIdUnderMouse: string | undefined;
+                contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
+                scrollTop: number;
+                estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+                estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+            } & {
+                readonly blockType: "dynamicBlocks" | "staticBlocks";
+                readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
+            } & {
+                readonly renderDelay: number;
+                readonly TooltipComponent: import("react").FC<any>;
+                readonly selectedFeatureId: string | undefined;
+                readonly DisplayMessageComponent: import("react").FC<any> | undefined;
+            } & {
+                readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
+                readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
+                getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+                getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
+                searchFeatureByID(id: string): [number, number, number, number] | undefined;
+                readonly currentBytesRequested: number;
+                readonly currentFeatureScreenDensity: number;
+                readonly maxFeatureScreenDensity: any;
+                readonly estimatedStatsReady: boolean;
+                readonly maxAllowableBytes: number;
+            } & {
+                setMessage(message: string): void;
+                afterAttach(): void;
+                estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
+                    headers?: Record<string, string> | undefined;
+                    signal?: AbortSignal | undefined;
+                    filters?: string[] | undefined;
+                }): Promise<{}>;
+                setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
+                setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+                clearRegionStats(): void;
+                setHeight(displayHeight: number): number;
+                resizeHeight(distance: number): number;
+                setScrollTop(scrollTop: number): void;
+                updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+                addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
+                setCurrBpPerPx(n: number): void;
+                deleteBlock(key: string): void;
+                selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+                clearFeatureSelection(): void;
+                setFeatureIdUnderMouse(feature: string | undefined): void;
+                reload(): void;
+                setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
+            } & {
+                readonly regionTooLarge: boolean;
+                readonly regionTooLargeReason: string;
+            } & {
+                reload(): Promise<void>;
+                afterAttach(): void;
+            } & {
+                regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
+                regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
+                trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+                contextMenuItems(): {
+                    label: string;
+                    icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+                        muiName: string;
+                    };
+                    onClick: () => void;
+                }[];
+                renderProps(): any;
+            } & {
+                renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
+                    overrideHeight: number;
+                }): Promise<JSX.Element>;
+            } & {
+                statsReady: boolean;
+                message: string | undefined;
+                stats: {
+                    scoreMin: number;
+                    scoreMax: number;
+                };
+                statsFetchInProgress: AbortController | undefined;
+            } & {
+                updateStats(stats: {
+                    scoreMin: number;
+                    scoreMax: number;
+                }): void;
+                setColor(color: string): void;
+                setPosColor(color: string): void;
+                setNegColor(color: string): void;
+                setLoading(aborter: AbortController): void;
+                selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+                setResolution(res: number): void;
+                setFill(fill: number): void;
+                toggleLogScale(): void;
+                setScaleType(scale?: string | undefined): void;
+                setSummaryScoreMode(val: string): void;
+                setAutoscale(val: string): void;
+                setMaxScore(val?: number | undefined): void;
+                setRendererType(val: string): void;
+                setMinScore(val?: number | undefined): void;
+                toggleCrossHatches(): void;
+                setCrossHatches(cross: boolean): void;
+            } & {
+                readonly TooltipComponent: import("react").FC<{}>;
+                readonly adapterTypeName: any;
+                readonly rendererTypeNameSimple: any;
+                readonly rendererTypeName: string;
+                readonly filters: undefined;
+                readonly scaleType: any;
+                readonly maxScore: any;
+                readonly minScore: any;
+            } & {
+                readonly rendererConfig: any;
+            } & {
+                readonly filled: any;
+                readonly summaryScoreModeSetting: any;
+                readonly domain: number[];
+                readonly needsScalebar: boolean;
+                readonly scaleOpts: {
+                    domain: number[];
+                    stats: {
+                        scoreMin: number;
+                        scoreMax: number;
+                    };
+                    autoscaleType: any;
+                    scaleType: any;
+                    inverted: any;
+                };
+                readonly canHaveFill: boolean;
+                readonly autoscaleType: any;
+                readonly displayCrossHatchesSetting: any;
+            } & {
+                readonly ticks: {
+                    range: number[];
+                    values: number[];
+                    format: (d: import("d3-scale").NumberValue) => string;
+                    position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+                };
+                readonly adapterCapabilities: string[];
+            } & {
+                renderProps(): any;
+                readonly hasResolution: boolean;
+                readonly hasGlobalStats: boolean;
+                readonly fillSetting: 2 | 1 | 0;
+            } & {
+                trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+                    label: string;
+                    subMenu: {
+                        label: string;
+                        type: string;
+                        checked: boolean;
+                        onClick: () => void;
+                    }[];
+                    type?: undefined;
+                    checked?: undefined;
+                    onClick?: undefined;
+                } | {
+                    type: string;
+                    label: string;
+                    checked: any;
+                    onClick: () => void;
+                    subMenu?: undefined;
+                })[];
+            } & {
+                reload(): Promise<void>;
+                afterAttach(): void;
+                renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
+                    overrideHeight: number;
+                }): Promise<JSX.Element>;
+            }, import("mobx-state-tree")._NotCustomized, {
+                type: string;
+                height: number;
+                id: string;
+                rpcDriverName: string | undefined;
+                userBpPerPxLimit: number | undefined;
+                userByteSizeLimit: number | undefined;
+            } & import("mobx-state-tree")._NotCustomized>>;
+        }) => JSX.Element;
+        XYPlotRendererReactComponent: (props: {
+            regions: import("@jbrowse/core/util/types").Region[];
+            features: Map<string, import("@jbrowse/core/util").Feature>;
+            bpPerPx: number;
+            width: number;
+            height: number;
+            onMouseLeave: Function;
+            onMouseMove: Function;
+            onFeatureClick: Function;
+            blockKey: string;
+        }) => JSX.Element;
+        XYPlotRenderer: typeof XYPlotRenderer;
+        WiggleBaseRenderer: typeof WiggleBaseRenderer;
+        xyPlotRendererConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+        utils: typeof utils;
+        linearWiggleDisplayModelFactory: (pluginManager: PluginManager, configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("mobx-state-tree").ISimpleType<string>;
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        } & {
+            height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+            blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+                key: import("mobx-state-tree").ISimpleType<string>;
+                region: import("mobx-state-tree").IModelType<{
+                    refName: import("mobx-state-tree").ISimpleType<string>;
+                    start: import("mobx-state-tree").ISimpleType<number>;
+                    end: import("mobx-state-tree").ISimpleType<number>;
+                    reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+                } & {
+                    assemblyName: import("mobx-state-tree").ISimpleType<string>;
+                }, {
+                    setRefName(newRefName: string): void;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+                reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+                isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+                isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+            }, {
+                renderInProgress: AbortController | undefined;
+                filled: boolean;
+                reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+                features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
+                layout: any;
+                status: string;
+                error: unknown;
+                message: string | undefined;
+                maxHeightReached: boolean;
+                ReactComponent: ({ model, }: {
+                    model: any;
+                }) => any;
+                renderProps: any;
+            } & {
+                doReload(): void;
+                afterAttach(): void;
+                setStatus(message: string): void;
+                setLoading(abortController: AbortController): void;
+                setMessage(messageText: string): void;
+                setRendered(props: {
+                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
+                    features: Map<string, import("@jbrowse/core/util").Feature>;
+                    layout: any;
+                    maxHeightReached: boolean;
+                    renderProps: any;
+                } | undefined): void;
+                setError(error: unknown): void;
+                reload(): void;
+                beforeDestroy(): void;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+            userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+        } & {
+            type: import("mobx-state-tree").ISimpleType<"LinearWiggleDisplay">;
+            configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
+            selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+            resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+            fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+            minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+            constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
+                max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+                min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+            }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
+        }, {
+            rendererTypeName: string;
+            error: unknown;
+        } & {
+            readonly RenderingComponent: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                onHorizontalScroll?: Function | undefined;
+                blockState?: Record<string, any> | undefined;
+            }>;
+            readonly DisplayBlurb: import("react").FC<{
+                model: {
+                    id: string;
+                    type: string;
+                    rpcDriverName: string | undefined;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                    rendererTypeName: string;
+                    error: unknown;
+                } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    type: import("mobx-state-tree").ISimpleType<string>;
+                    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+                }, {
+                    rendererTypeName: string;
+                    error: unknown;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+            }> | null;
+            readonly adapterConfig: any;
+            readonly parentTrack: any;
+            renderProps(): any;
+            readonly rendererType: any;
+            readonly DisplayMessageComponent: import("react").FC<any> | undefined;
+            trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+            readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
+            regionCannotBeRendered(): undefined;
+        } & {
+            setError(error?: unknown): void;
+            setRpcDriverName(rpcDriverName: string): void;
+            reload(): void;
+        } & {
+            currBpPerPx: number;
+            message: string;
+            featureIdUnderMouse: string | undefined;
+            contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
+            scrollTop: number;
+            estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
+            estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
+        } & {
+            readonly blockType: "dynamicBlocks" | "staticBlocks";
+            readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
+        } & {
+            readonly renderDelay: number;
+            readonly TooltipComponent: import("react").FC<any>;
+            readonly selectedFeatureId: string | undefined;
+            readonly DisplayMessageComponent: import("react").FC<any> | undefined;
+        } & {
+            readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
+            readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
+            getFeatureOverlapping(blockKey: string, x: number, y: number): any;
+            getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
+            searchFeatureByID(id: string): [number, number, number, number] | undefined;
+            readonly currentBytesRequested: number;
+            readonly currentFeatureScreenDensity: number;
+            readonly maxFeatureScreenDensity: any;
+            readonly estimatedStatsReady: boolean;
+            readonly maxAllowableBytes: number;
+        } & {
+            setMessage(message: string): void;
+            afterAttach(): void;
+            estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
+                headers?: Record<string, string> | undefined;
+                signal?: AbortSignal | undefined;
+                filters?: string[] | undefined;
+            }): Promise<{}>;
+            setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
+            setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
+            clearRegionStats(): void;
+            setHeight(displayHeight: number): number;
+            resizeHeight(distance: number): number;
+            setScrollTop(scrollTop: number): void;
+            updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
+            addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
+            setCurrBpPerPx(n: number): void;
+            deleteBlock(key: string): void;
+            selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+            clearFeatureSelection(): void;
+            setFeatureIdUnderMouse(feature: string | undefined): void;
+            reload(): void;
+            setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
+        } & {
+            readonly regionTooLarge: boolean;
+            readonly regionTooLargeReason: string;
+        } & {
+            reload(): Promise<void>;
+            afterAttach(): void;
+        } & {
+            regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
+            regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | undefined;
+            trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
+            contextMenuItems(): {
+                label: string;
+                icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+                    muiName: string;
+                };
+                onClick: () => void;
+            }[];
+            renderProps(): any;
+        } & {
+            renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
+                overrideHeight: number;
+            }): Promise<JSX.Element>;
+        } & {
+            statsReady: boolean;
+            message: string | undefined;
+            stats: {
+                scoreMin: number;
+                scoreMax: number;
+            };
+            statsFetchInProgress: AbortController | undefined;
+        } & {
+            updateStats(stats: {
+                scoreMin: number;
+                scoreMax: number;
+            }): void;
+            setColor(color: string): void;
+            setPosColor(color: string): void;
+            setNegColor(color: string): void;
+            setLoading(aborter: AbortController): void;
+            selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+            setResolution(res: number): void;
+            setFill(fill: number): void;
+            toggleLogScale(): void;
+            setScaleType(scale?: string | undefined): void;
+            setSummaryScoreMode(val: string): void;
+            setAutoscale(val: string): void;
+            setMaxScore(val?: number | undefined): void;
+            setRendererType(val: string): void;
+            setMinScore(val?: number | undefined): void;
+            toggleCrossHatches(): void;
+            setCrossHatches(cross: boolean): void;
+        } & {
+            readonly TooltipComponent: import("react").FC<{}>;
+            readonly adapterTypeName: any;
+            readonly rendererTypeNameSimple: any;
+            readonly rendererTypeName: string;
+            readonly filters: undefined;
+            readonly scaleType: any;
+            readonly maxScore: any;
+            readonly minScore: any;
+        } & {
+            readonly rendererConfig: any;
+        } & {
+            readonly filled: any;
+            readonly summaryScoreModeSetting: any;
+            readonly domain: number[];
+            readonly needsScalebar: boolean;
+            readonly scaleOpts: {
+                domain: number[];
+                stats: {
+                    scoreMin: number;
+                    scoreMax: number;
+                };
+                autoscaleType: any;
+                scaleType: any;
+                inverted: any;
+            };
+            readonly canHaveFill: boolean;
+            readonly autoscaleType: any;
+            readonly displayCrossHatchesSetting: any;
+        } & {
+            readonly ticks: {
+                range: number[];
+                values: number[];
+                format: (d: import("d3-scale").NumberValue) => string;
+                position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+            };
+            readonly adapterCapabilities: string[];
+        } & {
+            renderProps(): any;
+            readonly hasResolution: boolean;
+            readonly hasGlobalStats: boolean;
+            readonly fillSetting: 2 | 1 | 0;
+        } & {
+            trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+                label: string;
+                subMenu: {
+                    label: string;
+                    type: string;
+                    checked: boolean;
+                    onClick: () => void;
+                }[];
+                type?: undefined;
+                checked?: undefined;
+                onClick?: undefined;
+            } | {
+                type: string;
+                label: string;
+                checked: any;
+                onClick: () => void;
+                subMenu?: undefined;
+            })[];
+        } & {
+            reload(): Promise<void>;
+            afterAttach(): void;
+            renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
+                overrideHeight: number;
+            }): Promise<JSX.Element>;
+        }, import("mobx-state-tree")._NotCustomized, {
+            type: string;
+            height: number;
+            id: string;
+            rpcDriverName: string | undefined;
+            userBpPerPxLimit: number | undefined;
+            userByteSizeLimit: number | undefined;
+        } & import("mobx-state-tree")._NotCustomized>;
+    };
+}
+export * from './util';
+export { LinearWiggleDisplayReactComponent, Tooltip, WiggleRendering, WiggleBaseRenderer, linearWiggleDisplayModelFactory, };
+export type { TooltipContentsComponent };