@jbrowse/plugin-wiggle 1.7.11 → 2.1.0

package/dist/MultiLinearWiggleDisplay/models/model.js.map

@@ -0,0 +1 @@
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package/dist/MultiQuantitativeTrack/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/MultiQuantitativeTrack/index.js

@@ -0,0 +1,19 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var configuration_1 = require("@jbrowse/core/configuration");
+var models_1 = require("@jbrowse/core/pluggableElementTypes/models");
+var TrackType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/TrackType"));
+exports.default = (function (pluginManager) {
+    pluginManager.addTrackType(function () {
+        var configSchema = (0, configuration_1.ConfigurationSchema)('MultiQuantitativeTrack', {}, { baseConfiguration: (0, models_1.createBaseTrackConfig)(pluginManager) });
+        return new TrackType_1.default({
+            name: 'MultiQuantitativeTrack',
+            configSchema: configSchema,
+            stateModel: (0, models_1.createBaseTrackModel)(pluginManager, 'MultiQuantitativeTrack', configSchema),
+        });
+    });
+});
+//# sourceMappingURL=index.js.map

package/dist/MultiQuantitativeTrack/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiQuantitativeTrack/index.ts"],"names":[],"mappings":";;;;;AAAA,6DAAiE;AACjE,qEAGmD;AACnD,4FAAqE;AAGrE,mBAAe,UAAC,aAA4B;IAC1C,aAAa,CAAC,YAAY,CAAC;QACzB,IAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,wBAAwB,EACxB,EAAE,EACF,EAAE,iBAAiB,EAAE,IAAA,8BAAqB,EAAC,aAAa,CAAC,EAAE,CAC5D,CAAA;QACD,OAAO,IAAI,mBAAS,CAAC;YACnB,IAAI,EAAE,wBAAwB;YAC9B,YAAY,cAAA;YACZ,UAAU,EAAE,IAAA,6BAAoB,EAC9B,aAAa,EACb,wBAAwB,EACxB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,EAAA"}

package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts

@@ -0,0 +1,7 @@
+import { Feature } from '@jbrowse/core/util';
+import WiggleBaseRenderer, { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
+export default class MultiRowLineRenderer extends WiggleBaseRenderer {
+    draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
+        reducedFeatures: Feature[];
+    }>;
+}

package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js

@@ -0,0 +1,131 @@
+"use strict";
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
+    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
+        if (ar || !(i in from)) {
+            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
+            ar[i] = from[i];
+        }
+    }
+    return to.concat(ar || Array.prototype.slice.call(from));
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var util_1 = require("../util");
+var drawxy_1 = require("../drawxy");
+var WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
+var MultiRowLineRenderer = /** @class */ (function (_super) {
+    __extends(MultiRowLineRenderer, _super);
+    function MultiRowLineRenderer() {
+        return _super !== null && _super.apply(this, arguments) || this;
+    }
+    // @ts-ignore
+    MultiRowLineRenderer.prototype.draw = function (ctx, props) {
+        return __awaiter(this, void 0, void 0, function () {
+            var bpPerPx, sources, regions, features, _a, region, groups, height, width, feats;
+            return __generator(this, function (_b) {
+                bpPerPx = props.bpPerPx, sources = props.sources, regions = props.regions, features = props.features;
+                _a = __read(regions, 1), region = _a[0];
+                groups = (0, util_1.groupBy)(__spreadArray([], __read(features.values()), false), function (f) { return f.get('source'); });
+                height = props.height / Object.keys(groups).length;
+                width = (region.end - region.start) / bpPerPx;
+                feats = [];
+                ctx.save();
+                sources.forEach(function (source) {
+                    var reducedFeatures = (0, drawxy_1.drawLine)(ctx, __assign(__assign({}, props), { features: groups[source.name], height: height, colorCallback: function () { return source.color || 'blue'; } })).reducedFeatures;
+                    ctx.strokeStyle = 'rgba(200,200,200,0.8)';
+                    ctx.beginPath();
+                    ctx.moveTo(0, height);
+                    ctx.lineTo(width, height);
+                    ctx.stroke();
+                    ctx.translate(0, height);
+                    feats = feats.concat(reducedFeatures);
+                });
+                ctx.restore();
+                return [2 /*return*/, { reducedFeatures: feats }];
+            });
+        });
+    };
+    return MultiRowLineRenderer;
+}(WiggleBaseRenderer_1.default));
+exports.default = MultiRowLineRenderer;
+//# sourceMappingURL=MultiRowLineRenderer.js.map

package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MultiRowLineRenderer.js","sourceRoot":"","sources":["../../src/MultiRowLineRenderer/MultiRowLineRenderer.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,gCAAiC;AACjC,oCAAoC;AACpC,6EAE8B;AAE9B;IAAkD,wCAAkB;IAApE;;IA4BA,CAAC;IA3BC,aAAa;IACP,mCAAI,GAAV,UAAW,GAA6B,EAAE,KAAgB;;;;gBAChD,OAAO,GAAiC,KAAK,QAAtC,EAAE,OAAO,GAAwB,KAAK,QAA7B,EAAE,OAAO,GAAe,KAAK,QAApB,EAAE,QAAQ,GAAK,KAAK,SAAV,CAAU;gBAC/C,KAAA,OAAW,OAAO,IAAA,EAAjB,MAAM,QAAA,CAAW;gBAClB,MAAM,GAAG,IAAA,cAAO,2BAAK,QAAQ,CAAC,MAAM,EAAE,WAAG,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAf,CAAe,CAAC,CAAA;gBAC9D,MAAM,GAAG,KAAK,CAAC,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,MAAM,CAAA;gBAClD,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;gBAC/C,KAAK,GAAG,EAAe,CAAA;gBAC3B,GAAG,CAAC,IAAI,EAAE,CAAA;gBACV,OAAO,CAAC,OAAO,CAAC,UAAA,MAAM;oBACZ,IAAA,eAAe,GAAK,IAAA,iBAAQ,EAAC,GAAG,wBACnC,KAAK,KACR,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,EAC7B,MAAM,QAAA,EACN,aAAa,EAAE,cAAM,OAAA,MAAM,CAAC,KAAK,IAAI,MAAM,EAAtB,CAAsB,IAC3C,gBALqB,CAKrB;oBACF,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;oBACzC,GAAG,CAAC,SAAS,EAAE,CAAA;oBACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;oBACrB,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;oBACzB,GAAG,CAAC,MAAM,EAAE,CAAA;oBACZ,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;oBACxB,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,eAAe,CAAC,CAAA;gBACvC,CAAC,CAAC,CAAA;gBACF,GAAG,CAAC,OAAO,EAAE,CAAA;gBACb,sBAAO,EAAE,eAAe,EAAE,KAAK,EAAE,EAAA;;;KAClC;IACH,2BAAC;AAAD,CAAC,AA5BD,CAAkD,4BAAkB,GA4BnE"}

package/dist/MultiRowLineRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;

package/dist/MultiRowLineRenderer/configSchema.js

@@ -0,0 +1,23 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var mobx_state_tree_1 = require("mobx-state-tree");
+var configuration_1 = require("@jbrowse/core/configuration");
+var configSchema_1 = __importDefault(require("../configSchema"));
+var configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowLineRenderer', {
+    displayCrossHatches: {
+        type: 'boolean',
+        description: 'choose to draw cross hatches (sideways lines)',
+        defaultValue: false,
+    },
+    summaryScoreMode: {
+        type: 'stringEnum',
+        model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
+        description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
+        defaultValue: 'avg',
+    },
+}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
+exports.default = configSchema;
+//# sourceMappingURL=configSchema.js.map

package/dist/MultiRowLineRenderer/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/MultiRowLineRenderer/configSchema.ts"],"names":[],"mappings":";;;;;AAAA,mDAAuC;AAEvC,6DAAiE;AACjE,iEAA0C;AAE1C,IAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,sBAAsB,EACtB;IACE,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;IACD,gBAAgB,EAAE;QAChB,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,uBAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;QACzE,WAAW,EACT,oGAAoG;QACtG,YAAY,EAAE,KAAK;KACpB;CACF,EACD,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,kBAAe,YAAY,CAAA"}

package/dist/MultiRowLineRenderer/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/MultiRowLineRenderer/index.js

@@ -0,0 +1,19 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
+var MultiRowLineRenderer_1 = __importDefault(require("./MultiRowLineRenderer"));
+var configSchema_1 = __importDefault(require("./configSchema"));
+exports.default = (function (pluginManager) {
+    pluginManager.addRendererType(function () {
+        return new MultiRowLineRenderer_1.default({
+            name: 'MultiRowLineRenderer',
+            ReactComponent: MultiWiggleRendering_1.default,
+            configSchema: configSchema_1.default,
+            pluginManager: pluginManager,
+        });
+    });
+});
+//# sourceMappingURL=index.js.map

package/dist/MultiRowLineRenderer/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiRowLineRenderer/index.ts"],"names":[],"mappings":";;;;;AACA,iFAAoD;AACpD,gFAAyD;AACzD,gEAAyC;AAEzC,mBAAe,UAAC,aAA4B;IAC1C,aAAa,CAAC,eAAe,CAC3B;QACE,OAAA,IAAI,8BAAoB,CAAC;YACvB,IAAI,EAAE,sBAAsB;YAC5B,cAAc,gCAAA;YACd,YAAY,wBAAA;YACZ,aAAa,eAAA;SACd,CAAC;IALF,CAKE,CACL,CAAA;AACH,CAAC,EAAA"}

package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts

@@ -0,0 +1,7 @@
+import { Feature } from '@jbrowse/core/util';
+import WiggleBaseRenderer, { MultiRenderArgsDeserialized as MultiArgs } from '../WiggleBaseRenderer';
+export default class MultiXYPlotRenderer extends WiggleBaseRenderer {
+    draw(ctx: CanvasRenderingContext2D, props: MultiArgs): Promise<{
+        reducedFeatures: Feature[];
+    }>;
+}

package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js

@@ -0,0 +1,164 @@
+"use strict";
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
+    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
+        if (ar || !(i in from)) {
+            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
+            ar[i] = from[i];
+        }
+    }
+    return to.concat(ar || Array.prototype.slice.call(from));
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var util_1 = require("../util");
+var drawxy_1 = require("../drawxy");
+var WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
+var MultiXYPlotRenderer = /** @class */ (function (_super) {
+    __extends(MultiXYPlotRenderer, _super);
+    function MultiXYPlotRenderer() {
+        return _super !== null && _super.apply(this, arguments) || this;
+    }
+    // @ts-ignore
+    MultiXYPlotRenderer.prototype.draw = function (ctx, props) {
+        return __awaiter(this, void 0, void 0, function () {
+            var bpPerPx, sources, regions, features, _a, region, groups, height, width, Color, feats;
+            return __generator(this, function (_b) {
+                switch (_b.label) {
+                    case 0:
+                        bpPerPx = props.bpPerPx, sources = props.sources, regions = props.regions, features = props.features;
+                        _a = __read(regions, 1), region = _a[0];
+                        groups = (0, util_1.groupBy)(__spreadArray([], __read(features.values()), false), function (f) { return f.get('source'); });
+                        height = props.height / Object.keys(groups).length;
+                        width = (region.end - region.start) / bpPerPx;
+                        return [4 /*yield*/, Promise.resolve().then(function () { return __importStar(require('color')); }).then(function (f) { return f.default; })];
+                    case 1:
+                        Color = _b.sent();
+                        feats = [];
+                        ctx.save();
+                        sources.forEach(function (source) {
+                            var features = groups[source.name];
+                            if (!features) {
+                                return;
+                            }
+                            var reducedFeatures = (0, drawxy_1.drawXY)(ctx, __assign(__assign({}, props), { features: features, height: height, colorCallback: function () { return source.color || 'blue'; }, Color: Color })).reducedFeatures;
+                            ctx.strokeStyle = 'rgba(200,200,200,0.8)';
+                            ctx.beginPath();
+                            ctx.moveTo(0, height);
+                            ctx.lineTo(width, height);
+                            ctx.stroke();
+                            ctx.translate(0, height);
+                            feats = feats.concat(reducedFeatures);
+                        });
+                        ctx.restore();
+                        return [2 /*return*/, { reducedFeatures: feats }];
+                }
+            });
+        });
+    };
+    return MultiXYPlotRenderer;
+}(WiggleBaseRenderer_1.default));
+exports.default = MultiXYPlotRenderer;
+//# sourceMappingURL=MultiRowXYPlotRenderer.js.map

package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MultiRowXYPlotRenderer.js","sourceRoot":"","sources":["../../src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,gCAAiC;AACjC,oCAAkC;AAElC,6EAE8B;AAE9B;IAAiD,uCAAkB;IAAnE;;IAkCA,CAAC;IAjCC,aAAa;IACP,kCAAI,GAAV,UAAW,GAA6B,EAAE,KAAgB;;;;;;wBAChD,OAAO,GAAiC,KAAK,QAAtC,EAAE,OAAO,GAAwB,KAAK,QAA7B,EAAE,OAAO,GAAe,KAAK,QAApB,EAAE,QAAQ,GAAK,KAAK,SAAV,CAAU;wBAC/C,KAAA,OAAW,OAAO,IAAA,EAAjB,MAAM,QAAA,CAAW;wBAClB,MAAM,GAAG,IAAA,cAAO,2BAAK,QAAQ,CAAC,MAAM,EAAE,WAAG,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAf,CAAe,CAAC,CAAA;wBAC9D,MAAM,GAAG,KAAK,CAAC,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,MAAM,CAAA;wBAClD,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;wBACrC,qBAAM,iEAAO,OAAO,OAAE,IAAI,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,OAAO,EAAT,CAAS,CAAC,EAAA;;wBAAlD,KAAK,GAAG,SAA0C;wBACpD,KAAK,GAAG,EAAe,CAAA;wBAC3B,GAAG,CAAC,IAAI,EAAE,CAAA;wBACV,OAAO,CAAC,OAAO,CAAC,UAAA,MAAM;4BACpB,IAAM,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAA;4BACpC,IAAI,CAAC,QAAQ,EAAE;gCACb,OAAM;6BACP;4BACO,IAAA,eAAe,GAAK,IAAA,eAAM,EAAC,GAAG,wBACjC,KAAK,KACR,QAAQ,UAAA,EACR,MAAM,QAAA,EACN,aAAa,EAAE,cAAM,OAAA,MAAM,CAAC,KAAK,IAAI,MAAM,EAAtB,CAAsB,EAC3C,KAAK,OAAA,IACL,gBANqB,CAMrB;4BACF,GAAG,CAAC,WAAW,GAAG,uBAAuB,CAAA;4BACzC,GAAG,CAAC,SAAS,EAAE,CAAA;4BACf,GAAG,CAAC,MAAM,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;4BACrB,GAAG,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;4BACzB,GAAG,CAAC,MAAM,EAAE,CAAA;4BACZ,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,MAAM,CAAC,CAAA;4BACxB,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,eAAe,CAAC,CAAA;wBACvC,CAAC,CAAC,CAAA;wBACF,GAAG,CAAC,OAAO,EAAE,CAAA;wBACb,sBAAO,EAAE,eAAe,EAAE,KAAK,EAAE,EAAA;;;;KAClC;IACH,0BAAC;AAAD,CAAC,AAlCD,CAAiD,4BAAkB,GAkClE"}

package/dist/MultiRowXYPlotRenderer/configSchema.d.ts

@@ -0,0 +1,2 @@
+declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default configSchema;

package/dist/MultiRowXYPlotRenderer/configSchema.js

@@ -0,0 +1,31 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var mobx_state_tree_1 = require("mobx-state-tree");
+var configuration_1 = require("@jbrowse/core/configuration");
+var configSchema_1 = __importDefault(require("../configSchema"));
+var configSchema = (0, configuration_1.ConfigurationSchema)('MultiRowXYPlotRenderer', {
+    filled: {
+        type: 'boolean',
+        defaultValue: true,
+    },
+    displayCrossHatches: {
+        type: 'boolean',
+        description: 'choose to draw cross hatches (sideways lines)',
+        defaultValue: false,
+    },
+    summaryScoreMode: {
+        type: 'stringEnum',
+        model: mobx_state_tree_1.types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
+        description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
+        defaultValue: 'whiskers',
+    },
+    minSize: {
+        type: 'number',
+        defaultValue: 0,
+    },
+}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
+exports.default = configSchema;
+//# sourceMappingURL=configSchema.js.map

package/dist/MultiRowXYPlotRenderer/configSchema.js.map

@@ -0,0 +1 @@
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package/dist/MultiRowXYPlotRenderer/index.d.ts

@@ -0,0 +1,3 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/MultiRowXYPlotRenderer/index.js

@@ -0,0 +1,19 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var MultiWiggleRendering_1 = __importDefault(require("../MultiWiggleRendering"));
+var MultiRowXYPlotRenderer_1 = __importDefault(require("./MultiRowXYPlotRenderer"));
+var configSchema_1 = __importDefault(require("./configSchema"));
+exports.default = (function (pluginManager) {
+    pluginManager.addRendererType(function () {
+        return new MultiRowXYPlotRenderer_1.default({
+            name: 'MultiRowXYPlotRenderer',
+            ReactComponent: MultiWiggleRendering_1.default,
+            configSchema: configSchema_1.default,
+            pluginManager: pluginManager,
+        });
+    });
+});
+//# sourceMappingURL=index.js.map

package/dist/MultiRowXYPlotRenderer/index.js.map

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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiRowXYPlotRenderer/index.ts"],"names":[],"mappings":";;;;;AACA,iFAAoD;AACpD,oFAA6D;AAC7D,gEAAyC;AAEzC,mBAAe,UAAC,aAA4B;IAC1C,aAAa,CAAC,eAAe,CAC3B;QACE,OAAA,IAAI,gCAAsB,CAAC;YACzB,IAAI,EAAE,wBAAwB;YAC9B,cAAc,gCAAA;YACd,YAAY,wBAAA;YACZ,aAAa,eAAA;SACd,CAAC;IALF,CAKE,CACL,CAAA;AACH,CAAC,EAAA"}

package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts

@@ -0,0 +1,28 @@
+import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { AugmentedRegion as Region } from '@jbrowse/core/util/types';
+import { Feature } from '@jbrowse/core/util';
+interface WiggleOptions extends BaseOptions {
+    resolution?: number;
+}
+interface AdapterEntry {
+    dataAdapter: BaseFeatureDataAdapter;
+    [key: string]: unknown;
+}
+export default class MultiWiggleAdapter extends BaseFeatureDataAdapter {
+    static capabilities: string[];
+    getAdapters(): Promise<AdapterEntry[]>;
+    getRefNames(opts?: BaseOptions): Promise<string[]>;
+    getGlobalStats(opts?: BaseOptions): Promise<{
+        scoreMin: number;
+        scoreMax: number;
+    }>;
+    getFeatures(region: Region, opts?: WiggleOptions): import("rxjs").Observable<Feature>;
+    estimateRegionsStats(_regions: Region[]): Promise<{
+        featureDensity: number;
+    }>;
+    getSources(): Promise<{
+        name: unknown;
+    }[]>;
+    freeResources(): void;
+}
+export {};