@jbrowse/plugin-wiggle 1.7.11 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (446) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +8 -7
  2. package/dist/BigWigAdapter/BigWigAdapter.js +205 -283
  3. package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -0
  4. package/dist/BigWigAdapter/configSchema.js +17 -21
  5. package/dist/BigWigAdapter/configSchema.js.map +1 -0
  6. package/dist/BigWigAdapter/index.d.ts +3 -1
  7. package/dist/BigWigAdapter/index.js +42 -12
  8. package/dist/BigWigAdapter/index.js.map +1 -0
  9. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
  10. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +68 -0
  11. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
  12. package/dist/CreateMultiWiggleExtension/index.d.ts +2 -0
  13. package/dist/CreateMultiWiggleExtension/index.js +111 -0
  14. package/dist/CreateMultiWiggleExtension/index.js.map +1 -0
  15. package/dist/DensityRenderer/DensityRenderer.d.ts +6 -0
  16. package/dist/DensityRenderer/DensityRenderer.js +74 -0
  17. package/dist/DensityRenderer/DensityRenderer.js.map +1 -0
  18. package/dist/DensityRenderer/configSchema.d.ts +2 -0
  19. package/dist/DensityRenderer/configSchema.js +10 -0
  20. package/dist/DensityRenderer/configSchema.js.map +1 -0
  21. package/dist/DensityRenderer/index.d.ts +3 -6
  22. package/dist/DensityRenderer/index.js +17 -135
  23. package/dist/DensityRenderer/index.js.map +1 -0
  24. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +4 -2
  25. package/dist/LinePlotRenderer/LinePlotRenderer.js +83 -168
  26. package/dist/LinePlotRenderer/LinePlotRenderer.js.map +1 -0
  27. package/dist/LinePlotRenderer/configSchema.d.ts +2 -2
  28. package/dist/LinePlotRenderer/configSchema.js +15 -69
  29. package/dist/LinePlotRenderer/configSchema.js.map +1 -0
  30. package/dist/LinePlotRenderer/index.d.ts +3 -3
  31. package/dist/LinePlotRenderer/index.js +17 -32
  32. package/dist/LinePlotRenderer/index.js.map +1 -0
  33. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +6 -2
  34. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +88 -106
  35. package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  36. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +86 -107
  37. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  38. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +6 -11
  39. package/dist/LinearWiggleDisplay/components/Tooltip.js +47 -163
  40. package/dist/LinearWiggleDisplay/components/Tooltip.js.map +1 -0
  41. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +44 -50
  42. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  43. package/dist/LinearWiggleDisplay/components/YScaleBar.js +24 -31
  44. package/dist/LinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  45. package/dist/LinearWiggleDisplay/index.d.ts +7 -3
  46. package/dist/LinearWiggleDisplay/index.js +27 -41
  47. package/dist/LinearWiggleDisplay/index.js.map +1 -0
  48. package/dist/LinearWiggleDisplay/models/configSchema.js +65 -69
  49. package/dist/LinearWiggleDisplay/models/configSchema.js.map +1 -0
  50. package/dist/LinearWiggleDisplay/models/model.d.ts +39 -18
  51. package/dist/LinearWiggleDisplay/models/model.js +538 -696
  52. package/dist/LinearWiggleDisplay/models/model.js.map +1 -0
  53. package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
  54. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +135 -0
  55. package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
  56. package/dist/MultiDensityRenderer/configSchema.d.ts +2 -0
  57. package/dist/MultiDensityRenderer/configSchema.js +10 -0
  58. package/dist/MultiDensityRenderer/configSchema.js.map +1 -0
  59. package/dist/MultiDensityRenderer/index.d.ts +3 -0
  60. package/dist/MultiDensityRenderer/index.js +19 -0
  61. package/dist/MultiDensityRenderer/index.js.map +1 -0
  62. package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
  63. package/dist/MultiLineRenderer/MultiLineRenderer.js +124 -0
  64. package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
  65. package/dist/MultiLineRenderer/configSchema.d.ts +2 -0
  66. package/dist/MultiLineRenderer/configSchema.js +23 -0
  67. package/dist/MultiLineRenderer/configSchema.js.map +1 -0
  68. package/dist/MultiLineRenderer/index.d.ts +3 -0
  69. package/dist/MultiLineRenderer/index.js +19 -0
  70. package/dist/MultiLineRenderer/index.js.map +1 -0
  71. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
  72. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +239 -0
  73. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  74. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
  75. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +91 -0
  76. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  77. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
  78. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +78 -0
  79. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
  80. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
  81. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +144 -0
  82. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  83. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
  84. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js +26 -0
  85. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  86. package/dist/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
  87. package/dist/MultiLinearWiggleDisplay/components/util.js +38 -0
  88. package/dist/MultiLinearWiggleDisplay/components/util.js.map +1 -0
  89. package/dist/MultiLinearWiggleDisplay/index.d.ts +3 -0
  90. package/dist/MultiLinearWiggleDisplay/index.js +23 -0
  91. package/dist/MultiLinearWiggleDisplay/index.js.map +1 -0
  92. package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
  93. package/dist/MultiLinearWiggleDisplay/models/configSchema.js +77 -0
  94. package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
  95. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
  96. package/dist/MultiLinearWiggleDisplay/models/model.js +675 -0
  97. package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -0
  98. package/dist/MultiQuantitativeTrack/index.d.ts +3 -0
  99. package/dist/MultiQuantitativeTrack/index.js +19 -0
  100. package/dist/MultiQuantitativeTrack/index.js.map +1 -0
  101. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
  102. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +131 -0
  103. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
  104. package/dist/MultiRowLineRenderer/configSchema.d.ts +2 -0
  105. package/dist/MultiRowLineRenderer/configSchema.js +23 -0
  106. package/dist/MultiRowLineRenderer/configSchema.js.map +1 -0
  107. package/dist/MultiRowLineRenderer/index.d.ts +3 -0
  108. package/dist/MultiRowLineRenderer/index.js +19 -0
  109. package/dist/MultiRowLineRenderer/index.js.map +1 -0
  110. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
  111. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +164 -0
  112. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
  113. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
  114. package/dist/MultiRowXYPlotRenderer/configSchema.js +31 -0
  115. package/dist/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
  116. package/dist/MultiRowXYPlotRenderer/index.d.ts +3 -0
  117. package/dist/MultiRowXYPlotRenderer/index.js +19 -0
  118. package/dist/MultiRowXYPlotRenderer/index.js.map +1 -0
  119. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +28 -0
  120. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +244 -0
  121. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
  122. package/dist/MultiWiggleAdapter/configSchema.d.ts +2 -0
  123. package/dist/MultiWiggleAdapter/configSchema.js +14 -0
  124. package/dist/MultiWiggleAdapter/configSchema.js.map +1 -0
  125. package/dist/MultiWiggleAdapter/index.d.ts +3 -0
  126. package/dist/MultiWiggleAdapter/index.js +47 -0
  127. package/dist/MultiWiggleAdapter/index.js.map +1 -0
  128. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
  129. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +139 -0
  130. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
  131. package/dist/MultiWiggleAddTrackWidget/index.d.ts +3 -0
  132. package/dist/MultiWiggleAddTrackWidget/index.js +19 -0
  133. package/dist/MultiWiggleAddTrackWidget/index.js.map +1 -0
  134. package/dist/MultiWiggleRendering.d.ts +21 -0
  135. package/dist/MultiWiggleRendering.js +164 -0
  136. package/dist/MultiWiggleRendering.js.map +1 -0
  137. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
  138. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +153 -0
  139. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
  140. package/dist/MultiXYPlotRenderer/configSchema.d.ts +2 -0
  141. package/dist/MultiXYPlotRenderer/configSchema.js +31 -0
  142. package/dist/MultiXYPlotRenderer/configSchema.js.map +1 -0
  143. package/dist/MultiXYPlotRenderer/index.d.ts +3 -0
  144. package/dist/MultiXYPlotRenderer/index.js +19 -0
  145. package/dist/MultiXYPlotRenderer/index.js.map +1 -0
  146. package/dist/QuantitativeTrack/index.d.ts +3 -0
  147. package/dist/QuantitativeTrack/index.js +19 -0
  148. package/dist/QuantitativeTrack/index.js.map +1 -0
  149. package/dist/Tooltip.d.ts +20 -0
  150. package/dist/Tooltip.js +124 -0
  151. package/dist/Tooltip.js.map +1 -0
  152. package/dist/WiggleBaseRenderer.d.ts +11 -12
  153. package/dist/WiggleBaseRenderer.js +132 -129
  154. package/dist/WiggleBaseRenderer.js.map +1 -0
  155. package/dist/WiggleRPC/rpcMethods.d.ts +17 -1
  156. package/dist/WiggleRPC/rpcMethods.js +258 -289
  157. package/dist/WiggleRPC/rpcMethods.js.map +1 -0
  158. package/dist/WiggleRendering.d.ts +1 -1
  159. package/dist/WiggleRendering.js +103 -102
  160. package/dist/WiggleRendering.js.map +1 -0
  161. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +4 -1
  162. package/dist/XYPlotRenderer/XYPlotRenderer.js +147 -194
  163. package/dist/XYPlotRenderer/XYPlotRenderer.js.map +1 -0
  164. package/dist/XYPlotRenderer/configSchema.d.ts +2 -0
  165. package/dist/XYPlotRenderer/configSchema.js +31 -0
  166. package/dist/XYPlotRenderer/configSchema.js.map +1 -0
  167. package/dist/XYPlotRenderer/index.d.ts +7 -3
  168. package/dist/XYPlotRenderer/index.js +21 -32
  169. package/dist/XYPlotRenderer/index.js.map +1 -0
  170. package/dist/configSchema.js +42 -74
  171. package/dist/configSchema.js.map +1 -0
  172. package/dist/drawxy.d.ts +50 -0
  173. package/dist/drawxy.js +411 -0
  174. package/dist/drawxy.js.map +1 -0
  175. package/dist/index.d.ts +194 -85
  176. package/dist/index.js +139 -247
  177. package/dist/index.js.map +1 -0
  178. package/dist/util.d.ts +34 -1
  179. package/dist/util.js +270 -143
  180. package/dist/util.js.map +1 -0
  181. package/esm/BigWigAdapter/BigWigAdapter.d.ts +25 -0
  182. package/esm/BigWigAdapter/BigWigAdapter.js +81 -0
  183. package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -0
  184. package/esm/BigWigAdapter/configSchema.d.ts +2 -0
  185. package/esm/BigWigAdapter/configSchema.js +16 -0
  186. package/esm/BigWigAdapter/configSchema.js.map +1 -0
  187. package/esm/BigWigAdapter/index.d.ts +3 -0
  188. package/esm/BigWigAdapter/index.js +15 -0
  189. package/esm/BigWigAdapter/index.js.map +1 -0
  190. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
  191. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +26 -0
  192. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
  193. package/esm/CreateMultiWiggleExtension/index.d.ts +2 -0
  194. package/esm/CreateMultiWiggleExtension/index.js +51 -0
  195. package/esm/CreateMultiWiggleExtension/index.js.map +1 -0
  196. package/esm/DensityRenderer/DensityRenderer.d.ts +6 -0
  197. package/esm/DensityRenderer/DensityRenderer.js +8 -0
  198. package/esm/DensityRenderer/DensityRenderer.js.map +1 -0
  199. package/esm/DensityRenderer/configSchema.d.ts +2 -0
  200. package/esm/DensityRenderer/configSchema.js +5 -0
  201. package/esm/DensityRenderer/configSchema.js.map +1 -0
  202. package/esm/DensityRenderer/index.d.ts +3 -0
  203. package/esm/DensityRenderer/index.js +12 -0
  204. package/esm/DensityRenderer/index.js.map +1 -0
  205. package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +6 -0
  206. package/esm/LinePlotRenderer/LinePlotRenderer.js +13 -0
  207. package/esm/LinePlotRenderer/LinePlotRenderer.js.map +1 -0
  208. package/esm/LinePlotRenderer/configSchema.d.ts +2 -0
  209. package/esm/LinePlotRenderer/configSchema.js +11 -0
  210. package/esm/LinePlotRenderer/configSchema.js.map +1 -0
  211. package/esm/LinePlotRenderer/index.d.ts +3 -0
  212. package/esm/LinePlotRenderer/index.js +12 -0
  213. package/esm/LinePlotRenderer/index.js.map +1 -0
  214. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +14 -0
  215. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +48 -0
  216. package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  217. package/esm/LinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
  218. package/esm/LinearWiggleDisplay/components/SetMinMaxDialog.js +46 -0
  219. package/esm/LinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  220. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +19 -0
  221. package/esm/LinearWiggleDisplay/components/Tooltip.js +34 -0
  222. package/esm/LinearWiggleDisplay/components/Tooltip.js.map +1 -0
  223. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +8 -0
  224. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +29 -0
  225. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  226. package/esm/LinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
  227. package/esm/LinearWiggleDisplay/components/YScaleBar.js +9 -0
  228. package/esm/LinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  229. package/esm/LinearWiggleDisplay/index.d.ts +7 -0
  230. package/esm/LinearWiggleDisplay/index.js +21 -0
  231. package/esm/LinearWiggleDisplay/index.js.map +1 -0
  232. package/esm/LinearWiggleDisplay/models/configSchema.d.ts +2 -0
  233. package/esm/LinearWiggleDisplay/models/configSchema.js +64 -0
  234. package/esm/LinearWiggleDisplay/models/configSchema.js.map +1 -0
  235. package/esm/LinearWiggleDisplay/models/model.d.ts +309 -0
  236. package/esm/LinearWiggleDisplay/models/model.js +449 -0
  237. package/esm/LinearWiggleDisplay/models/model.js.map +1 -0
  238. package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
  239. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +36 -0
  240. package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
  241. package/esm/MultiDensityRenderer/configSchema.d.ts +2 -0
  242. package/esm/MultiDensityRenderer/configSchema.js +5 -0
  243. package/esm/MultiDensityRenderer/configSchema.js.map +1 -0
  244. package/esm/MultiDensityRenderer/index.d.ts +3 -0
  245. package/esm/MultiDensityRenderer/index.js +12 -0
  246. package/esm/MultiDensityRenderer/index.js.map +1 -0
  247. package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
  248. package/esm/MultiLineRenderer/MultiLineRenderer.js +25 -0
  249. package/esm/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
  250. package/esm/MultiLineRenderer/configSchema.d.ts +2 -0
  251. package/esm/MultiLineRenderer/configSchema.js +18 -0
  252. package/esm/MultiLineRenderer/configSchema.js.map +1 -0
  253. package/esm/MultiLineRenderer/index.d.ts +3 -0
  254. package/esm/MultiLineRenderer/index.js +12 -0
  255. package/esm/MultiLineRenderer/index.js.map +1 -0
  256. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
  257. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +162 -0
  258. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  259. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
  260. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +46 -0
  261. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  262. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
  263. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +43 -0
  264. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
  265. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
  266. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +99 -0
  267. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  268. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
  269. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js +9 -0
  270. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  271. package/esm/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
  272. package/esm/MultiLinearWiggleDisplay/components/util.js +31 -0
  273. package/esm/MultiLinearWiggleDisplay/components/util.js.map +1 -0
  274. package/esm/MultiLinearWiggleDisplay/index.d.ts +3 -0
  275. package/esm/MultiLinearWiggleDisplay/index.js +18 -0
  276. package/esm/MultiLinearWiggleDisplay/index.js.map +1 -0
  277. package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
  278. package/esm/MultiLinearWiggleDisplay/models/configSchema.js +74 -0
  279. package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
  280. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
  281. package/esm/MultiLinearWiggleDisplay/models/model.js +570 -0
  282. package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -0
  283. package/esm/MultiQuantitativeTrack/index.d.ts +3 -0
  284. package/esm/MultiQuantitativeTrack/index.js +14 -0
  285. package/esm/MultiQuantitativeTrack/index.js.map +1 -0
  286. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
  287. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +33 -0
  288. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
  289. package/esm/MultiRowLineRenderer/configSchema.d.ts +2 -0
  290. package/esm/MultiRowLineRenderer/configSchema.js +18 -0
  291. package/esm/MultiRowLineRenderer/configSchema.js.map +1 -0
  292. package/esm/MultiRowLineRenderer/index.d.ts +3 -0
  293. package/esm/MultiRowLineRenderer/index.js +12 -0
  294. package/esm/MultiRowLineRenderer/index.js.map +1 -0
  295. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
  296. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +39 -0
  297. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
  298. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
  299. package/esm/MultiRowXYPlotRenderer/configSchema.js +26 -0
  300. package/esm/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
  301. package/esm/MultiRowXYPlotRenderer/index.d.ts +3 -0
  302. package/esm/MultiRowXYPlotRenderer/index.js +12 -0
  303. package/esm/MultiRowXYPlotRenderer/index.js.map +1 -0
  304. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +28 -0
  305. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +87 -0
  306. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
  307. package/esm/MultiWiggleAdapter/configSchema.d.ts +2 -0
  308. package/esm/MultiWiggleAdapter/configSchema.js +12 -0
  309. package/esm/MultiWiggleAdapter/configSchema.js.map +1 -0
  310. package/esm/MultiWiggleAdapter/index.d.ts +3 -0
  311. package/esm/MultiWiggleAdapter/index.js +15 -0
  312. package/esm/MultiWiggleAdapter/index.js.map +1 -0
  313. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
  314. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +87 -0
  315. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
  316. package/esm/MultiWiggleAddTrackWidget/index.d.ts +3 -0
  317. package/esm/MultiWiggleAddTrackWidget/index.js +12 -0
  318. package/esm/MultiWiggleAddTrackWidget/index.js.map +1 -0
  319. package/esm/MultiWiggleRendering.d.ts +21 -0
  320. package/esm/MultiWiggleRendering.js +75 -0
  321. package/esm/MultiWiggleRendering.js.map +1 -0
  322. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
  323. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +28 -0
  324. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
  325. package/esm/MultiXYPlotRenderer/configSchema.d.ts +2 -0
  326. package/esm/MultiXYPlotRenderer/configSchema.js +26 -0
  327. package/esm/MultiXYPlotRenderer/configSchema.js.map +1 -0
  328. package/esm/MultiXYPlotRenderer/index.d.ts +3 -0
  329. package/esm/MultiXYPlotRenderer/index.js +12 -0
  330. package/esm/MultiXYPlotRenderer/index.js.map +1 -0
  331. package/esm/QuantitativeTrack/index.d.ts +3 -0
  332. package/esm/QuantitativeTrack/index.js +14 -0
  333. package/esm/QuantitativeTrack/index.js.map +1 -0
  334. package/esm/Tooltip.d.ts +20 -0
  335. package/esm/Tooltip.js +71 -0
  336. package/esm/Tooltip.js.map +1 -0
  337. package/esm/WiggleBaseRenderer.d.ts +54 -0
  338. package/esm/WiggleBaseRenderer.js +36 -0
  339. package/esm/WiggleBaseRenderer.js.map +1 -0
  340. package/esm/WiggleRPC/rpcMethods.d.ts +47 -0
  341. package/esm/WiggleRPC/rpcMethods.js +112 -0
  342. package/esm/WiggleRPC/rpcMethods.js.map +1 -0
  343. package/esm/WiggleRendering.d.ts +16 -0
  344. package/esm/WiggleRendering.js +36 -0
  345. package/esm/WiggleRendering.js.map +1 -0
  346. package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +7 -0
  347. package/esm/XYPlotRenderer/XYPlotRenderer.js +26 -0
  348. package/esm/XYPlotRenderer/XYPlotRenderer.js.map +1 -0
  349. package/esm/XYPlotRenderer/configSchema.d.ts +2 -0
  350. package/esm/XYPlotRenderer/configSchema.js +26 -0
  351. package/esm/XYPlotRenderer/configSchema.js.map +1 -0
  352. package/esm/XYPlotRenderer/index.d.ts +7 -0
  353. package/esm/XYPlotRenderer/index.js +13 -0
  354. package/esm/XYPlotRenderer/index.js.map +1 -0
  355. package/esm/configSchema.d.ts +2 -0
  356. package/esm/configSchema.js +41 -0
  357. package/esm/configSchema.js.map +1 -0
  358. package/esm/drawxy.d.ts +50 -0
  359. package/esm/drawxy.js +286 -0
  360. package/esm/drawxy.js.map +1 -0
  361. package/esm/index.d.ts +975 -0
  362. package/esm/index.js +90 -0
  363. package/esm/index.js.map +1 -0
  364. package/esm/util.d.ts +74 -0
  365. package/esm/util.js +231 -0
  366. package/esm/util.js.map +1 -0
  367. package/package.json +32 -18
  368. package/src/BigWigAdapter/BigWigAdapter.ts +53 -35
  369. package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +10 -10
  370. package/src/BigWigAdapter/configSchema.ts +5 -0
  371. package/src/BigWigAdapter/index.ts +19 -1
  372. package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +66 -0
  373. package/src/CreateMultiWiggleExtension/index.ts +57 -0
  374. package/src/DensityRenderer/DensityRenderer.test.js +8 -2
  375. package/src/DensityRenderer/DensityRenderer.ts +14 -0
  376. package/src/DensityRenderer/__snapshots__/DensityRenderer.test.js.snap +8 -0
  377. package/src/{LinePlotRenderer/index.js → DensityRenderer/configSchema.ts} +5 -5
  378. package/src/DensityRenderer/index.ts +14 -53
  379. package/src/LinePlotRenderer/LinePlotRenderer.ts +19 -0
  380. package/src/LinePlotRenderer/configSchema.ts +16 -0
  381. package/src/LinePlotRenderer/index.ts +16 -0
  382. package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +26 -31
  383. package/src/LinearWiggleDisplay/components/SetMinMaxDialog.tsx +13 -11
  384. package/src/LinearWiggleDisplay/components/Tooltip.tsx +6 -121
  385. package/src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx +9 -4
  386. package/src/LinearWiggleDisplay/index.ts +24 -3
  387. package/src/LinearWiggleDisplay/models/model.tsx +139 -224
  388. package/src/MultiDensityRenderer/MultiDensityRenderer.ts +39 -0
  389. package/src/MultiDensityRenderer/configSchema.ts +10 -0
  390. package/src/MultiDensityRenderer/index.ts +16 -0
  391. package/src/MultiLineRenderer/MultiLineRenderer.ts +29 -0
  392. package/src/MultiLineRenderer/configSchema.ts +24 -0
  393. package/src/MultiLineRenderer/index.ts +17 -0
  394. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +322 -0
  395. package/src/MultiLinearWiggleDisplay/components/SetMinMaxDialog.tsx +113 -0
  396. package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +76 -0
  397. package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +261 -0
  398. package/src/MultiLinearWiggleDisplay/components/YScaleBar.tsx +25 -0
  399. package/src/MultiLinearWiggleDisplay/components/declare.d.ts +1 -0
  400. package/src/MultiLinearWiggleDisplay/components/util.test.ts +69 -0
  401. package/src/MultiLinearWiggleDisplay/components/util.ts +33 -0
  402. package/src/MultiLinearWiggleDisplay/index.ts +20 -0
  403. package/src/MultiLinearWiggleDisplay/models/configSchema.ts +94 -0
  404. package/src/MultiLinearWiggleDisplay/models/model.tsx +721 -0
  405. package/src/MultiQuantitativeTrack/index.ts +26 -0
  406. package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +36 -0
  407. package/src/MultiRowLineRenderer/configSchema.ts +25 -0
  408. package/src/MultiRowLineRenderer/index.ts +16 -0
  409. package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +43 -0
  410. package/src/MultiRowXYPlotRenderer/configSchema.ts +33 -0
  411. package/src/MultiRowXYPlotRenderer/index.ts +16 -0
  412. package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +120 -0
  413. package/src/MultiWiggleAdapter/configSchema.ts +16 -0
  414. package/src/MultiWiggleAdapter/index.ts +20 -0
  415. package/src/MultiWiggleAdapter/test_data/volvox.bw +0 -0
  416. package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +130 -0
  417. package/src/MultiWiggleAddTrackWidget/index.ts +17 -0
  418. package/src/MultiWiggleRendering.tsx +125 -0
  419. package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +32 -0
  420. package/src/MultiXYPlotRenderer/configSchema.ts +31 -0
  421. package/src/MultiXYPlotRenderer/index.ts +17 -0
  422. package/src/QuantitativeTrack/index.ts +26 -0
  423. package/src/Tooltip.tsx +123 -0
  424. package/src/WiggleBaseRenderer.tsx +17 -11
  425. package/src/WiggleRPC/rpcMethods.ts +68 -17
  426. package/src/WiggleRendering.tsx +12 -18
  427. package/src/XYPlotRenderer/XYPlotRenderer.test.js +3 -1
  428. package/src/XYPlotRenderer/XYPlotRenderer.ts +19 -124
  429. package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.js.snap +8 -0
  430. package/src/XYPlotRenderer/configSchema.ts +32 -0
  431. package/src/XYPlotRenderer/index.ts +16 -10
  432. package/src/__snapshots__/WiggleRendering.test.js.snap +0 -2
  433. package/src/configSchema.ts +0 -28
  434. package/src/declare.d.ts +0 -1
  435. package/src/drawxy.ts +387 -0
  436. package/src/index.ts +75 -129
  437. package/src/util.ts +174 -0
  438. package/dist/BigWigAdapter/BigWigAdapter.test.js +0 -157
  439. package/dist/DensityRenderer/DensityRenderer.test.js +0 -88
  440. package/dist/WiggleRendering.test.js +0 -52
  441. package/dist/XYPlotRenderer/XYPlotRenderer.test.js +0 -87
  442. package/dist/declare.d.js +0 -1
  443. package/dist/index.test.js +0 -24
  444. package/dist/util.test.js +0 -66
  445. package/src/LinePlotRenderer/LinePlotRenderer.js +0 -91
  446. package/src/LinePlotRenderer/configSchema.js +0 -68
@@ -0,0 +1,9 @@
1
+ /// <reference types="react" />
2
+ import { AnyConfigurationModel } from '@jbrowse/core/configuration';
3
+ declare const ConfirmDialog: ({ tracks, onClose, }: {
4
+ tracks: AnyConfigurationModel[];
5
+ onClose: (arg: boolean, arg1?: {
6
+ name: string;
7
+ }) => void;
8
+ }) => JSX.Element;
9
+ export default ConfirmDialog;
@@ -0,0 +1,68 @@
1
+ "use strict";
2
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
+ if (k2 === undefined) k2 = k;
4
+ var desc = Object.getOwnPropertyDescriptor(m, k);
5
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
+ desc = { enumerable: true, get: function() { return m[k]; } };
7
+ }
8
+ Object.defineProperty(o, k2, desc);
9
+ }) : (function(o, m, k, k2) {
10
+ if (k2 === undefined) k2 = k;
11
+ o[k2] = m[k];
12
+ }));
13
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
15
+ }) : function(o, v) {
16
+ o["default"] = v;
17
+ });
18
+ var __importStar = (this && this.__importStar) || function (mod) {
19
+ if (mod && mod.__esModule) return mod;
20
+ var result = {};
21
+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
+ __setModuleDefault(result, mod);
23
+ return result;
24
+ };
25
+ var __read = (this && this.__read) || function (o, n) {
26
+ var m = typeof Symbol === "function" && o[Symbol.iterator];
27
+ if (!m) return o;
28
+ var i = m.call(o), r, ar = [], e;
29
+ try {
30
+ while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
31
+ }
32
+ catch (error) { e = { error: error }; }
33
+ finally {
34
+ try {
35
+ if (r && !r.done && (m = i["return"])) m.call(i);
36
+ }
37
+ finally { if (e) throw e.error; }
38
+ }
39
+ return ar;
40
+ };
41
+ Object.defineProperty(exports, "__esModule", { value: true });
42
+ var react_1 = __importStar(require("react"));
43
+ var material_1 = require("@mui/material");
44
+ var configuration_1 = require("@jbrowse/core/configuration");
45
+ var ConfirmDialog = function (_a) {
46
+ var tracks = _a.tracks, onClose = _a.onClose;
47
+ var _b = __read((0, react_1.useState)('MultiWiggle ' + Date.now()), 2), val = _b[0], setVal = _b[1];
48
+ var allQuant = tracks.every(function (t) { return t.type === 'QuantitativeTrack'; });
49
+ return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: function () { return onClose(false); } },
50
+ react_1.default.createElement(material_1.DialogTitle, null, "Confirm multi-wiggle track create"),
51
+ react_1.default.createElement(material_1.DialogContent, null,
52
+ react_1.default.createElement(material_1.Typography, null,
53
+ !allQuant
54
+ ? 'Not every track looks like a QuantitativeTrack. This could have unexpected behavior, confirm if it looks ok.'
55
+ : null,
56
+ "Listing:"),
57
+ react_1.default.createElement("ul", null, tracks.map(function (track) { return (react_1.default.createElement("li", { key: track.trackId },
58
+ (0, configuration_1.readConfObject)(track, 'name'),
59
+ " - ",
60
+ track.type)); })),
61
+ react_1.default.createElement(material_1.TextField, { value: val, onChange: function (event) { return setVal(event.target.value); }, helperText: "Track name" }),
62
+ react_1.default.createElement(material_1.Typography, null, "Confirm creation of track?")),
63
+ react_1.default.createElement(material_1.DialogActions, null,
64
+ react_1.default.createElement(material_1.Button, { onClick: function () { return onClose(false); }, color: "primary" }, "Cancel"),
65
+ react_1.default.createElement(material_1.Button, { onClick: function () { return onClose(true, { name: val }); }, color: "primary", variant: "contained", autoFocus: true }, "Submit"))));
66
+ };
67
+ exports.default = ConfirmDialog;
68
+ //# sourceMappingURL=ConfirmDialog.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"ConfirmDialog.js","sourceRoot":"","sources":["../../src/CreateMultiWiggleExtension/ConfirmDialog.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,6CAAuC;AACvC,0CAQsB;AACtB,6DAGoC;AAEpC,IAAM,aAAa,GAAG,UAAC,EAMtB;QALC,MAAM,YAAA,EACN,OAAO,aAAA;IAKD,IAAA,KAAA,OAAgB,IAAA,gBAAQ,EAAC,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,IAAA,EAApD,GAAG,QAAA,EAAE,MAAM,QAAyC,CAAA;IAC3D,IAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,KAAK,mBAAmB,EAA9B,CAA8B,CAAC,CAAA;IAClE,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,OAAO,EAAE,cAAM,OAAA,OAAO,CAAC,KAAK,CAAC,EAAd,CAAc;QACxC,8BAAC,sBAAW,4CAAgD;QAC5D,8BAAC,wBAAa;YACZ,8BAAC,qBAAU;gBACR,CAAC,QAAQ;oBACR,CAAC,CAAC,8GAA8G;oBAChH,CAAC,CAAC,IAAI;2BAEG;YACb,0CACG,MAAM,CAAC,GAAG,CAAC,UAAA,KAAK,IAAI,OAAA,CACnB,sCAAI,GAAG,EAAE,KAAK,CAAC,OAAO;gBACnB,IAAA,8BAAc,EAAC,KAAK,EAAE,MAAM,CAAC;;gBAAK,KAAK,CAAC,IAAI,CAC1C,CACN,EAJoB,CAIpB,CAAC,CACC;YACL,8BAAC,oBAAS,IACR,KAAK,EAAE,GAAG,EACV,QAAQ,EAAE,UAAA,KAAK,IAAI,OAAA,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAA1B,CAA0B,EAC7C,UAAU,EAAC,YAAY,GACvB;YACF,8BAAC,qBAAU,qCAAwC,CACrC;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAE,cAAM,OAAA,OAAO,CAAC,KAAK,CAAC,EAAd,CAAc,EAAE,KAAK,EAAC,SAAS,aAE7C;YACT,8BAAC,iBAAM,IACL,OAAO,EAAE,cAAM,OAAA,OAAO,CAAC,IAAI,EAAE,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,EAA5B,CAA4B,EAC3C,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,EACnB,SAAS,mBAGF,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAA;AAED,kBAAe,aAAa,CAAA"}
@@ -0,0 +1,2 @@
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ export default function (pm: PluginManager): void;
@@ -0,0 +1,111 @@
1
+ "use strict";
2
+ var __assign = (this && this.__assign) || function () {
3
+ __assign = Object.assign || function(t) {
4
+ for (var s, i = 1, n = arguments.length; i < n; i++) {
5
+ s = arguments[i];
6
+ for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
7
+ t[p] = s[p];
8
+ }
9
+ return t;
10
+ };
11
+ return __assign.apply(this, arguments);
12
+ };
13
+ var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
14
+ if (k2 === undefined) k2 = k;
15
+ var desc = Object.getOwnPropertyDescriptor(m, k);
16
+ if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
17
+ desc = { enumerable: true, get: function() { return m[k]; } };
18
+ }
19
+ Object.defineProperty(o, k2, desc);
20
+ }) : (function(o, m, k, k2) {
21
+ if (k2 === undefined) k2 = k;
22
+ o[k2] = m[k];
23
+ }));
24
+ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
25
+ Object.defineProperty(o, "default", { enumerable: true, value: v });
26
+ }) : function(o, v) {
27
+ o["default"] = v;
28
+ });
29
+ var __importStar = (this && this.__importStar) || function (mod) {
30
+ if (mod && mod.__esModule) return mod;
31
+ var result = {};
32
+ if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
33
+ __setModuleDefault(result, mod);
34
+ return result;
35
+ };
36
+ var __read = (this && this.__read) || function (o, n) {
37
+ var m = typeof Symbol === "function" && o[Symbol.iterator];
38
+ if (!m) return o;
39
+ var i = m.call(o), r, ar = [], e;
40
+ try {
41
+ while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
42
+ }
43
+ catch (error) { e = { error: error }; }
44
+ finally {
45
+ try {
46
+ if (r && !r.done && (m = i["return"])) m.call(i);
47
+ }
48
+ finally { if (e) throw e.error; }
49
+ }
50
+ return ar;
51
+ };
52
+ var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
53
+ if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
54
+ if (ar || !(i in from)) {
55
+ if (!ar) ar = Array.prototype.slice.call(from, 0, i);
56
+ ar[i] = from[i];
57
+ }
58
+ }
59
+ return to.concat(ar || Array.prototype.slice.call(from));
60
+ };
61
+ Object.defineProperty(exports, "__esModule", { value: true });
62
+ var react_1 = require("react");
63
+ var configuration_1 = require("@jbrowse/core/configuration");
64
+ var util_1 = require("@jbrowse/core/util");
65
+ var ConfirmDialog = (0, react_1.lazy)(function () { return Promise.resolve().then(function () { return __importStar(require('./ConfirmDialog')); }); });
66
+ function default_1(pm) {
67
+ pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', function () {
68
+ return [
69
+ {
70
+ label: 'Create multi-wiggle track',
71
+ onClick: function (model) {
72
+ var tracks = model.selection;
73
+ var trackIds = tracks.map(function (c) { return (0, configuration_1.readConfObject)(c, 'name'); });
74
+ function makeTrack(arg) {
75
+ var subadapters = tracks
76
+ .map(function (c) { return (0, configuration_1.readConfObject)(c, 'adapter'); })
77
+ .map(function (c, idx) { return (__assign(__assign({}, c), { source: trackIds[idx] })); });
78
+ var assemblyNames = __spreadArray([], __read(new Set(tracks.map(function (c) { return (0, configuration_1.readConfObject)(c, 'assemblyNames'); }).flat())), false);
79
+ var now = +Date.now();
80
+ var trackId = "multitrack-".concat(now, "-sessionTrack");
81
+ (0, util_1.getSession)(model).addTrackConf({
82
+ type: 'MultiQuantitativeTrack',
83
+ trackId: trackId,
84
+ name: arg.name,
85
+ assemblyNames: assemblyNames,
86
+ adapter: {
87
+ type: 'MultiWiggleAdapter',
88
+ subadapters: subadapters,
89
+ },
90
+ });
91
+ model.view.showTrack(trackId);
92
+ }
93
+ (0, util_1.getSession)(model).queueDialog(function (handleClose) { return [
94
+ ConfirmDialog,
95
+ {
96
+ tracks: tracks,
97
+ onClose: function (arg, arg1) {
98
+ if (arg) {
99
+ makeTrack(arg1);
100
+ }
101
+ handleClose();
102
+ },
103
+ },
104
+ ]; });
105
+ },
106
+ },
107
+ ];
108
+ });
109
+ }
110
+ exports.default = default_1;
111
+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/CreateMultiWiggleExtension/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+BAA4B;AAE5B,6DAA4D;AAC5D,2CAA+C;AAG/C,IAAM,aAAa,GAAG,IAAA,YAAI,EAAC,cAAM,wEAAO,iBAAiB,QAAxB,CAAyB,CAAC,CAAA;AAE3D,mBAAyB,EAAiB;IACxC,EAAE,CAAC,mBAAmB,CAAC,mCAAmC,EAAE;QAC1D,OAAO;YACL;gBACE,KAAK,EAAE,2BAA2B;gBAClC,OAAO,EAAE,UAAC,KAAqC;oBAC7C,IAAM,MAAM,GAAG,KAAK,CAAC,SAAS,CAAA;oBAC9B,IAAM,QAAQ,GAAG,MAAM,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,IAAA,8BAAc,EAAC,CAAC,EAAE,MAAM,CAAC,EAAzB,CAAyB,CAAC,CAAA;oBAC3D,SAAS,SAAS,CAAC,GAAqB;wBACtC,IAAM,WAAW,GAAG,MAAM;6BACvB,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,IAAA,8BAAc,EAAC,CAAC,EAAE,SAAS,CAAC,EAA5B,CAA4B,CAAC;6BACtC,GAAG,CAAC,UAAC,CAAC,EAAE,GAAG,IAAK,OAAA,uBAAM,CAAC,KAAE,MAAM,EAAE,QAAQ,CAAC,GAAG,CAAC,IAAG,EAAjC,CAAiC,CAAC,CAAA;wBACrD,IAAM,aAAa,4BACd,IAAI,GAAG,CACR,MAAM,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,IAAA,8BAAc,EAAC,CAAC,EAAE,eAAe,CAAC,EAAlC,CAAkC,CAAC,CAAC,IAAI,EAAE,CAC3D,SACF,CAAA;wBACD,IAAM,GAAG,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,CAAA;wBACvB,IAAM,OAAO,GAAG,qBAAc,GAAG,kBAAe,CAAA;wBAEhD,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAC,YAAY,CAAC;4BAC7B,IAAI,EAAE,wBAAwB;4BAC9B,OAAO,SAAA;4BACP,IAAI,EAAE,GAAG,CAAC,IAAI;4BACd,aAAa,eAAA;4BACb,OAAO,EAAE;gCACP,IAAI,EAAE,oBAAoB;gCAC1B,WAAW,aAAA;6BACZ;yBACF,CAAC,CAAA;wBACF,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;oBAC/B,CAAC;oBACD,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAC,WAAW,CAAC,UAAA,WAAW,IAAI,OAAA;wBAC3C,aAAa;wBACb;4BACE,MAAM,QAAA;4BACN,OAAO,EAAE,UAAC,GAAY,EAAE,IAAsB;gCAC5C,IAAI,GAAG,EAAE;oCACP,SAAS,CAAC,IAAI,CAAC,CAAA;iCAChB;gCACD,WAAW,EAAE,CAAA;4BACf,CAAC;yBACF;qBACF,EAX4C,CAW5C,CAAC,CAAA;gBACJ,CAAC;aACF;SACF,CAAA;IACH,CAAC,CAAC,CAAA;AACJ,CAAC;AAhDD,4BAgDC"}
@@ -0,0 +1,6 @@
1
+ import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
2
+ export default class DensityRenderer extends WiggleBaseRenderer {
3
+ draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
4
+ reducedFeatures: import("@jbrowse/core/util").Feature[];
5
+ }>;
6
+ }
@@ -0,0 +1,74 @@
1
+ "use strict";
2
+ var __extends = (this && this.__extends) || (function () {
3
+ var extendStatics = function (d, b) {
4
+ extendStatics = Object.setPrototypeOf ||
5
+ ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
6
+ function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
7
+ return extendStatics(d, b);
8
+ };
9
+ return function (d, b) {
10
+ if (typeof b !== "function" && b !== null)
11
+ throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
12
+ extendStatics(d, b);
13
+ function __() { this.constructor = d; }
14
+ d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
15
+ };
16
+ })();
17
+ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
18
+ function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
19
+ return new (P || (P = Promise))(function (resolve, reject) {
20
+ function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
21
+ function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
22
+ function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
23
+ step((generator = generator.apply(thisArg, _arguments || [])).next());
24
+ });
25
+ };
26
+ var __generator = (this && this.__generator) || function (thisArg, body) {
27
+ var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
28
+ return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
29
+ function verb(n) { return function (v) { return step([n, v]); }; }
30
+ function step(op) {
31
+ if (f) throw new TypeError("Generator is already executing.");
32
+ while (_) try {
33
+ if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
34
+ if (y = 0, t) op = [op[0] & 2, t.value];
35
+ switch (op[0]) {
36
+ case 0: case 1: t = op; break;
37
+ case 4: _.label++; return { value: op[1], done: false };
38
+ case 5: _.label++; y = op[1]; op = [0]; continue;
39
+ case 7: op = _.ops.pop(); _.trys.pop(); continue;
40
+ default:
41
+ if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
42
+ if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
43
+ if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
44
+ if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
45
+ if (t[2]) _.ops.pop();
46
+ _.trys.pop(); continue;
47
+ }
48
+ op = body.call(thisArg, _);
49
+ } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
50
+ if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
51
+ }
52
+ };
53
+ var __importDefault = (this && this.__importDefault) || function (mod) {
54
+ return (mod && mod.__esModule) ? mod : { "default": mod };
55
+ };
56
+ Object.defineProperty(exports, "__esModule", { value: true });
57
+ var drawxy_1 = require("../drawxy");
58
+ var WiggleBaseRenderer_1 = __importDefault(require("../WiggleBaseRenderer"));
59
+ var DensityRenderer = /** @class */ (function (_super) {
60
+ __extends(DensityRenderer, _super);
61
+ function DensityRenderer() {
62
+ return _super !== null && _super.apply(this, arguments) || this;
63
+ }
64
+ DensityRenderer.prototype.draw = function (ctx, props) {
65
+ return __awaiter(this, void 0, void 0, function () {
66
+ return __generator(this, function (_a) {
67
+ return [2 /*return*/, (0, drawxy_1.drawDensity)(ctx, props)];
68
+ });
69
+ });
70
+ };
71
+ return DensityRenderer;
72
+ }(WiggleBaseRenderer_1.default));
73
+ exports.default = DensityRenderer;
74
+ //# sourceMappingURL=DensityRenderer.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"DensityRenderer.js","sourceRoot":"","sources":["../../src/DensityRenderer/DensityRenderer.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,oCAAuC;AAEvC,6EAE8B;AAE9B;IAA6C,mCAAkB;IAA/D;;IAOA,CAAC;IANO,8BAAI,GAAV,UACE,GAA6B,EAC7B,KAAyC;;;gBAEzC,sBAAO,IAAA,oBAAW,EAAC,GAAG,EAAE,KAAK,CAAC,EAAA;;;KAC/B;IACH,sBAAC;AAAD,CAAC,AAPD,CAA6C,4BAAkB,GAO9D"}
@@ -0,0 +1,2 @@
1
+ declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
+ export default configSchema;
@@ -0,0 +1,10 @@
1
+ "use strict";
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ var configuration_1 = require("@jbrowse/core/configuration");
7
+ var configSchema_1 = __importDefault(require("../configSchema"));
8
+ var configSchema = (0, configuration_1.ConfigurationSchema)('DensityRenderer', {}, { baseConfiguration: configSchema_1.default, explicitlyTyped: true });
9
+ exports.default = configSchema;
10
+ //# sourceMappingURL=configSchema.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/DensityRenderer/configSchema.ts"],"names":[],"mappings":";;;;;AAAA,6DAAiE;AAEjE,iEAA0C;AAE1C,IAAM,YAAY,GAAG,IAAA,mCAAmB,EACtC,iBAAiB,EACjB,EAAE,EACF,EAAE,iBAAiB,EAAE,sBAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,kBAAe,YAAY,CAAA"}
@@ -1,6 +1,3 @@
1
- import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
2
- export { default as ReactComponent } from '../WiggleRendering';
3
- export default class DensityRenderer extends WiggleBaseRenderer {
4
- draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): void;
5
- }
6
- export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ declare const _default: (pluginManager: PluginManager) => void;
3
+ export default _default;
@@ -1,137 +1,19 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- Object.defineProperty(exports, "__esModule", {
6
- value: true
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ var configSchema_1 = __importDefault(require("./configSchema"));
7
+ var DensityRenderer_1 = __importDefault(require("./DensityRenderer"));
8
+ var WiggleRendering_1 = __importDefault(require("../WiggleRendering"));
9
+ exports.default = (function (pluginManager) {
10
+ pluginManager.addRendererType(function () {
11
+ return new DensityRenderer_1.default({
12
+ name: 'DensityRenderer',
13
+ ReactComponent: WiggleRendering_1.default,
14
+ configSchema: configSchema_1.default,
15
+ pluginManager: pluginManager,
16
+ });
17
+ });
7
18
  });
8
- Object.defineProperty(exports, "ReactComponent", {
9
- enumerable: true,
10
- get: function get() {
11
- return _WiggleRendering.default;
12
- }
13
- });
14
- exports.default = exports.configSchema = void 0;
15
-
16
- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
17
-
18
- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
19
-
20
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
21
-
22
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
23
-
24
- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
25
-
26
- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
27
-
28
- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
29
-
30
- var _configuration = require("@jbrowse/core/configuration");
31
-
32
- var _util = require("@jbrowse/core/util");
33
-
34
- var _util2 = require("../util");
35
-
36
- var _configSchema = _interopRequireDefault(require("../configSchema"));
37
-
38
- var _WiggleBaseRenderer2 = _interopRequireDefault(require("../WiggleBaseRenderer"));
39
-
40
- var _WiggleRendering = _interopRequireDefault(require("../WiggleRendering"));
41
-
42
- function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
43
-
44
- function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
45
-
46
- function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
47
-
48
- function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
49
-
50
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
51
-
52
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
53
-
54
- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
55
-
56
- var DensityRenderer = /*#__PURE__*/function (_WiggleBaseRenderer) {
57
- (0, _inherits2.default)(DensityRenderer, _WiggleBaseRenderer);
58
-
59
- var _super = _createSuper(DensityRenderer);
60
-
61
- function DensityRenderer() {
62
- (0, _classCallCheck2.default)(this, DensityRenderer);
63
- return _super.apply(this, arguments);
64
- }
65
-
66
- (0, _createClass2.default)(DensityRenderer, [{
67
- key: "draw",
68
- value: function draw(ctx, props) {
69
- var features = props.features,
70
- regions = props.regions,
71
- bpPerPx = props.bpPerPx,
72
- scaleOpts = props.scaleOpts,
73
- height = props.height,
74
- config = props.config;
75
-
76
- var _regions = (0, _slicedToArray2.default)(regions, 1),
77
- region = _regions[0];
78
-
79
- var pivot = (0, _configuration.readConfObject)(config, 'bicolorPivot');
80
- var pivotValue = (0, _configuration.readConfObject)(config, 'bicolorPivotValue');
81
- var negColor = (0, _configuration.readConfObject)(config, 'negColor');
82
- var posColor = (0, _configuration.readConfObject)(config, 'posColor');
83
- var color = (0, _configuration.readConfObject)(config, 'color');
84
- var colorCallback;
85
-
86
- if (color === '#f0f') {
87
- var colorScale = pivot !== 'none' ? (0, _util2.getScale)(_objectSpread(_objectSpread({}, scaleOpts), {}, {
88
- pivotValue: pivotValue,
89
- range: [negColor, 'white', posColor]
90
- })) : (0, _util2.getScale)(_objectSpread(_objectSpread({}, scaleOpts), {}, {
91
- range: ['white', posColor]
92
- }));
93
-
94
- colorCallback = function colorCallback(feature) {
95
- return colorScale(feature.get('score'));
96
- };
97
- } else {
98
- colorCallback = function colorCallback(feature) {
99
- return (0, _configuration.readConfObject)(config, 'color', {
100
- feature: feature
101
- });
102
- };
103
- }
104
-
105
- var _iterator = _createForOfIteratorHelper(features.values()),
106
- _step;
107
-
108
- try {
109
- for (_iterator.s(); !(_step = _iterator.n()).done;) {
110
- var feature = _step.value;
111
-
112
- var _featureSpanPx = (0, _util.featureSpanPx)(feature, region, bpPerPx),
113
- _featureSpanPx2 = (0, _slicedToArray2.default)(_featureSpanPx, 2),
114
- leftPx = _featureSpanPx2[0],
115
- rightPx = _featureSpanPx2[1];
116
-
117
- var w = rightPx - leftPx + 0.3; // fudge factor for subpixel rendering
118
-
119
- ctx.fillStyle = colorCallback(feature);
120
- ctx.fillRect(leftPx, 0, w, height);
121
- }
122
- } catch (err) {
123
- _iterator.e(err);
124
- } finally {
125
- _iterator.f();
126
- }
127
- }
128
- }]);
129
- return DensityRenderer;
130
- }(_WiggleBaseRenderer2.default);
131
-
132
- exports.default = DensityRenderer;
133
- var configSchema = (0, _configuration.ConfigurationSchema)('DensityRenderer', {}, {
134
- baseConfiguration: _configSchema.default,
135
- explicitlyTyped: true
136
- });
137
- exports.configSchema = configSchema;
19
+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/DensityRenderer/index.ts"],"names":[],"mappings":";;;;;AAAA,gEAAyC;AAGzC,sEAA+C;AAC/C,uEAA+C;AAE/C,mBAAe,UAAC,aAA4B;IAC1C,aAAa,CAAC,eAAe,CAC3B;QACE,OAAA,IAAI,yBAAe,CAAC;YAClB,IAAI,EAAE,iBAAiB;YACvB,cAAc,2BAAA;YACd,YAAY,wBAAA;YACZ,aAAa,eAAA;SACd,CAAC;IALF,CAKE,CACL,CAAA;AACH,CAAC,EAAA"}
@@ -1,4 +1,6 @@
1
+ import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
1
2
  export default class LinePlotRenderer extends WiggleBaseRenderer {
2
- draw(ctx: any, props: any): void;
3
+ draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
4
+ reducedFeatures: import("@jbrowse/core/util").Feature[];
5
+ }>;
3
6
  }
4
- import WiggleBaseRenderer from "../WiggleBaseRenderer";