@jbrowse/plugin-wiggle 1.7.11 → 2.1.0

package/dist/BigWigAdapter/BigWigAdapter.d.ts

@@ -1,17 +1,18 @@
+import { BigWig } from '@gmod/bbi';
 import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
 import { AugmentedRegion as Region } from '@jbrowse/core/util/types';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
+import { Feature } from '@jbrowse/core/util';
 interface WiggleOptions extends BaseOptions {
     resolution?: number;
 }
 export default class BigWigAdapter extends BaseFeatureDataAdapter {
-    private bigwig;
+    private setupP?;
     static capabilities: string[];
-    constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    private setup;
+    private setupPre;
+    setup(opts?: BaseOptions): Promise<{
+        bigwig: BigWig;
+        header: any;
+    }>;
     getRefNames(opts?: BaseOptions): Promise<string[]>;
     refIdToName(refId: number): Promise<any>;
     getGlobalStats(opts?: BaseOptions): Promise<import("@jbrowse/core/util/stats").FeatureStats>;

package/dist/BigWigAdapter/BigWigAdapter.js

@@ -1,288 +1,210 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
-
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _bbi = require("@gmod/bbi");
-
-var _BaseAdapter = require("@jbrowse/core/data_adapters/BaseAdapter");
-
-var _io = require("@jbrowse/core/util/io");
-
-var _util = require("@jbrowse/core/util");
-
-var _rxjs = require("@jbrowse/core/util/rxjs");
-
-var _simpleFeature = _interopRequireDefault(require("@jbrowse/core/util/simpleFeature"));
-
-var _operators = require("rxjs/operators");
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _stats = require("@jbrowse/core/util/stats");
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-var BigWigAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
-  (0, _inherits2.default)(BigWigAdapter, _BaseFeatureDataAdapt);
-
-  var _super = _createSuper(BigWigAdapter);
-
-  function BigWigAdapter(config, getSubAdapter, pluginManager) {
-    var _this;
-
-    (0, _classCallCheck2.default)(this, BigWigAdapter);
-    _this = _super.call(this, config, getSubAdapter, pluginManager);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "bigwig", void 0);
-    _this.bigwig = new _bbi.BigWig({
-      filehandle: (0, _io.openLocation)((0, _configuration.readConfObject)(config, 'bigWigLocation'), _this.pluginManager)
+var __extends = (this && this.__extends) || (function () {
+    var extendStatics = function (d, b) {
+        extendStatics = Object.setPrototypeOf ||
+            ({ __proto__: [] } instanceof Array && function (d, b) { d.__proto__ = b; }) ||
+            function (d, b) { for (var p in b) if (Object.prototype.hasOwnProperty.call(b, p)) d[p] = b[p]; };
+        return extendStatics(d, b);
+    };
+    return function (d, b) {
+        if (typeof b !== "function" && b !== null)
+            throw new TypeError("Class extends value " + String(b) + " is not a constructor or null");
+        extendStatics(d, b);
+        function __() { this.constructor = d; }
+        d.prototype = b === null ? Object.create(b) : (__.prototype = b.prototype, new __());
+    };
+})();
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
     });
-    return _this;
-  }
-
-  (0, _createClass2.default)(BigWigAdapter, [{
-    key: "setup",
-    value: function () {
-      var _setup = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(opts) {
-        var _this2 = this;
-
-        var _ref, _ref$statusCallback, statusCallback;
-
-        return _regenerator.default.wrap(function _callee$(_context) {
-          while (1) {
-            switch (_context.prev = _context.next) {
-              case 0:
-                _ref = opts || {}, _ref$statusCallback = _ref.statusCallback, statusCallback = _ref$statusCallback === void 0 ? function () {} : _ref$statusCallback;
-                return _context.abrupt("return", (0, _util.updateStatus)('Downloading bigwig header', statusCallback, function () {
-                  return _this2.bigwig.getHeader(opts);
-                }));
-
-              case 2:
-              case "end":
-                return _context.stop();
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
             }
-          }
-        }, _callee);
-      }));
-
-      function setup(_x) {
-        return _setup.apply(this, arguments);
-      }
-
-      return setup;
-    }()
-  }, {
-    key: "getRefNames",
-    value: function () {
-      var _getRefNames = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(opts) {
-        var _yield$this$setup, refsByName;
-
-        return _regenerator.default.wrap(function _callee2$(_context2) {
-          while (1) {
-            switch (_context2.prev = _context2.next) {
-              case 0:
-                _context2.next = 2;
-                return this.setup(opts);
-
-              case 2:
-                _yield$this$setup = _context2.sent;
-                refsByName = _yield$this$setup.refsByName;
-                return _context2.abrupt("return", Object.keys(refsByName));
-
-              case 5:
-              case "end":
-                return _context2.stop();
-            }
-          }
-        }, _callee2, this);
-      }));
-
-      function getRefNames(_x2) {
-        return _getRefNames.apply(this, arguments);
-      }
-
-      return getRefNames;
-    }()
-  }, {
-    key: "refIdToName",
-    value: function () {
-      var _refIdToName = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(refId) {
-        var _refsByNumber$refId;
-
-        var _yield$this$setup2, refsByNumber;
-
-        return _regenerator.default.wrap(function _callee3$(_context3) {
-          while (1) {
-            switch (_context3.prev = _context3.next) {
-              case 0:
-                _context3.next = 2;
-                return this.setup();
-
-              case 2:
-                _yield$this$setup2 = _context3.sent;
-                refsByNumber = _yield$this$setup2.refsByNumber;
-                return _context3.abrupt("return", (_refsByNumber$refId = refsByNumber[refId]) === null || _refsByNumber$refId === void 0 ? void 0 : _refsByNumber$refId.name);
-
-              case 5:
-              case "end":
-                return _context3.stop();
-            }
-          }
-        }, _callee3, this);
-      }));
-
-      function refIdToName(_x3) {
-        return _refIdToName.apply(this, arguments);
-      }
-
-      return refIdToName;
-    }()
-  }, {
-    key: "getGlobalStats",
-    value: function () {
-      var _getGlobalStats = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(opts) {
-        var _yield$this$setup3, totalSummary;
-
-        return _regenerator.default.wrap(function _callee4$(_context4) {
-          while (1) {
-            switch (_context4.prev = _context4.next) {
-              case 0:
-                _context4.next = 2;
-                return this.setup(opts);
-
-              case 2:
-                _yield$this$setup3 = _context4.sent;
-                totalSummary = _yield$this$setup3.totalSummary;
-                return _context4.abrupt("return", (0, _stats.rectifyStats)(totalSummary));
-
-              case 5:
-              case "end":
-                return _context4.stop();
-            }
-          }
-        }, _callee4, this);
-      }));
-
-      function getGlobalStats(_x4) {
-        return _getGlobalStats.apply(this, arguments);
-      }
-
-      return getGlobalStats;
-    }()
-  }, {
-    key: "getFeatures",
-    value: function getFeatures(region) {
-      var _this3 = this;
-
-      var opts = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {};
-      var refName = region.refName,
-          start = region.start,
-          end = region.end;
-      var _opts$bpPerPx = opts.bpPerPx,
-          bpPerPx = _opts$bpPerPx === void 0 ? 0 : _opts$bpPerPx,
-          signal = opts.signal,
-          _opts$resolution = opts.resolution,
-          resolution = _opts$resolution === void 0 ? 1 : _opts$resolution,
-          _opts$statusCallback = opts.statusCallback,
-          statusCallback = _opts$statusCallback === void 0 ? function () {} : _opts$statusCallback;
-      return (0, _rxjs.ObservableCreate)( /*#__PURE__*/function () {
-        var _ref2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5(observer) {
-          var ob;
-          return _regenerator.default.wrap(function _callee5$(_context5) {
-            while (1) {
-              switch (_context5.prev = _context5.next) {
-                case 0:
-                  statusCallback('Downloading bigwig data');
-                  _context5.next = 3;
-                  return _this3.bigwig.getFeatureStream(refName, start, end, _objectSpread(_objectSpread({}, opts), {}, {
-                    basesPerSpan: bpPerPx / resolution
-                  }));
-
-                case 3:
-                  ob = _context5.sent;
-                  ob.pipe((0, _operators.mergeAll)(), (0, _operators.map)(function (record) {
-                    return new _simpleFeature.default({
-                      id: "".concat(refName, ":").concat(record.start, "-").concat(record.end),
-                      data: _objectSpread(_objectSpread({}, record), {}, {
-                        refName: refName
-                      })
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var bbi_1 = require("@gmod/bbi");
+var BaseAdapter_1 = require("@jbrowse/core/data_adapters/BaseAdapter");
+var io_1 = require("@jbrowse/core/util/io");
+var util_1 = require("@jbrowse/core/util");
+var rxjs_1 = require("@jbrowse/core/util/rxjs");
+var stats_1 = require("@jbrowse/core/util/stats");
+var BigWigAdapter = /** @class */ (function (_super) {
+    __extends(BigWigAdapter, _super);
+    function BigWigAdapter() {
+        return _super !== null && _super.apply(this, arguments) || this;
+    }
+    BigWigAdapter.prototype.setupPre = function (opts) {
+        return __awaiter(this, void 0, void 0, function () {
+            var _a, statusCallback, bigwig, header;
+            return __generator(this, function (_b) {
+                switch (_b.label) {
+                    case 0:
+                        _a = (opts || {}).statusCallback, statusCallback = _a === void 0 ? function () { } : _a;
+                        bigwig = new bbi_1.BigWig({
+                            filehandle: (0, io_1.openLocation)(this.getConf('bigWigLocation'), this.pluginManager),
+                        });
+                        return [4 /*yield*/, (0, util_1.updateStatus)('Downloading bigwig header', statusCallback, function () { return bigwig.getHeader(opts); })];
+                    case 1:
+                        header = _b.sent();
+                        return [2 /*return*/, { bigwig: bigwig, header: header }];
+                }
+            });
+        });
+    };
+    BigWigAdapter.prototype.setup = function (opts) {
+        return __awaiter(this, void 0, void 0, function () {
+            var _this = this;
+            return __generator(this, function (_a) {
+                if (!this.setupP) {
+                    this.setupP = this.setupPre(opts).catch(function (e) {
+                        _this.setupP = undefined;
+                        throw e;
                     });
-                  })).subscribe(observer);
-
-                case 5:
-                case "end":
-                  return _context5.stop();
-              }
-            }
-          }, _callee5);
-        }));
-
-        return function (_x5) {
-          return _ref2.apply(this, arguments);
-        };
-      }(), signal);
-    } // always render bigwig instead of calculating a feature density for it
-
-  }, {
-    key: "estimateRegionsStats",
-    value: function () {
-      var _estimateRegionsStats = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6(_regions) {
-        return _regenerator.default.wrap(function _callee6$(_context6) {
-          while (1) {
-            switch (_context6.prev = _context6.next) {
-              case 0:
-                return _context6.abrupt("return", {
-                  featureDensity: 0
-                });
-
-              case 1:
-              case "end":
-                return _context6.stop();
-            }
-          }
-        }, _callee6);
-      }));
-
-      function estimateRegionsStats(_x6) {
-        return _estimateRegionsStats.apply(this, arguments);
-      }
-
-      return estimateRegionsStats;
-    }()
-  }, {
-    key: "freeResources",
-    value: function freeResources() {}
-  }]);
-  return BigWigAdapter;
-}(_BaseAdapter.BaseFeatureDataAdapter);
-
+                }
+                return [2 /*return*/, this.setupP];
+            });
+        });
+    };
+    BigWigAdapter.prototype.getRefNames = function (opts) {
+        return __awaiter(this, void 0, void 0, function () {
+            var refsByName;
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0: return [4 /*yield*/, this.setup(opts)];
+                    case 1:
+                        refsByName = (_a.sent()).header.refsByName;
+                        return [2 /*return*/, Object.keys(refsByName)];
+                }
+            });
+        });
+    };
+    BigWigAdapter.prototype.refIdToName = function (refId) {
+        var _a;
+        return __awaiter(this, void 0, void 0, function () {
+            var refsByNumber;
+            return __generator(this, function (_b) {
+                switch (_b.label) {
+                    case 0: return [4 /*yield*/, this.setup()];
+                    case 1:
+                        refsByNumber = (_b.sent()).header.refsByNumber;
+                        return [2 /*return*/, (_a = refsByNumber[refId]) === null || _a === void 0 ? void 0 : _a.name];
+                }
+            });
+        });
+    };
+    BigWigAdapter.prototype.getGlobalStats = function (opts) {
+        return __awaiter(this, void 0, void 0, function () {
+            var totalSummary;
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0: return [4 /*yield*/, this.setup(opts)];
+                    case 1:
+                        totalSummary = (_a.sent()).header.totalSummary;
+                        return [2 /*return*/, (0, stats_1.rectifyStats)(totalSummary)];
+                }
+            });
+        });
+    };
+    BigWigAdapter.prototype.getFeatures = function (region, opts) {
+        var _this = this;
+        if (opts === void 0) { opts = {}; }
+        var refName = region.refName, start = region.start, end = region.end;
+        var _a = opts.bpPerPx, bpPerPx = _a === void 0 ? 0 : _a, signal = opts.signal, _b = opts.resolution, resolution = _b === void 0 ? 1 : _b, _c = opts.statusCallback, statusCallback = _c === void 0 ? function () { } : _c;
+        return (0, rxjs_1.ObservableCreate)(function (observer) { return __awaiter(_this, void 0, void 0, function () {
+            var source, bigwig, feats, _loop_1, i;
+            return __generator(this, function (_a) {
+                switch (_a.label) {
+                    case 0:
+                        statusCallback('Downloading bigwig data');
+                        source = this.getConf('source');
+                        return [4 /*yield*/, this.setup(opts)];
+                    case 1:
+                        bigwig = (_a.sent()).bigwig;
+                        return [4 /*yield*/, bigwig.getFeatures(refName, start, end, __assign(__assign({}, opts), { basesPerSpan: bpPerPx / resolution }))];
+                    case 2:
+                        feats = _a.sent();
+                        _loop_1 = function (i) {
+                            var data = feats[i];
+                            if (source) {
+                                // @ts-ignore
+                                data.source = source;
+                            }
+                            var uniqueId = "".concat(source, ":").concat(region.refName, ":").concat(data.start, "-").concat(data.end);
+                            // @ts-ignore
+                            data.refName = refName;
+                            data.uniqueId = uniqueId;
+                            observer.next({
+                                // @ts-ignore
+                                get: function (str) { return data[str]; },
+                                id: function () { return uniqueId; },
+                                // @ts-ignore
+                                toJSON: function () { return data; },
+                            });
+                        };
+                        for (i = 0; i < feats.length; i++) {
+                            _loop_1(i);
+                        }
+                        observer.complete();
+                        return [2 /*return*/];
+                }
+            });
+        }); }, signal);
+    };
+    // always render bigwig instead of calculating a feature density for it
+    BigWigAdapter.prototype.estimateRegionsStats = function (_regions) {
+        return __awaiter(this, void 0, void 0, function () {
+            return __generator(this, function (_a) {
+                return [2 /*return*/, { featureDensity: 0 }];
+            });
+        });
+    };
+    BigWigAdapter.prototype.freeResources = function () { };
+    BigWigAdapter.capabilities = [
+        'hasResolution',
+        'hasLocalStats',
+        'hasGlobalStats',
+    ];
+    return BigWigAdapter;
+}(BaseAdapter_1.BaseFeatureDataAdapter));
 exports.default = BigWigAdapter;
-(0, _defineProperty2.default)(BigWigAdapter, "capabilities", ['hasResolution', 'hasLocalStats', 'hasGlobalStats']);
+//# sourceMappingURL=BigWigAdapter.js.map

package/dist/BigWigAdapter/BigWigAdapter.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"BigWigAdapter.js","sourceRoot":"","sources":["../../src/BigWigAdapter/BigWigAdapter.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,iCAAkC;AAClC,uEAGgD;AAEhD,4CAAoD;AACpD,2CAA0D;AAC1D,gDAA0D;AAC1D,kDAAgF;AAMhF;IAA2C,iCAAsB;IAAjE;;IAsGA,CAAC;IA5Fe,gCAAQ,GAAtB,UAAuB,IAAkB;;;;;;wBAC/B,KAA8B,CAAA,IAAI,IAAI,EAAE,CAAA,eAAf,EAAzB,cAAc,mBAAG,cAAO,CAAC,KAAA,CAAe;wBAC1C,MAAM,GAAG,IAAI,YAAM,CAAC;4BACxB,UAAU,EAAE,IAAA,iBAAY,EACtB,IAAI,CAAC,OAAO,CAAC,gBAAgB,CAAC,EAC9B,IAAI,CAAC,aAAa,CACnB;yBACF,CAAC,CAAA;wBACa,qBAAM,IAAA,mBAAY,EAC/B,2BAA2B,EAC3B,cAAc,EACd,cAAM,OAAA,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,EAAtB,CAAsB,CAC7B,EAAA;;wBAJK,MAAM,GAAG,SAId;wBACD,sBAAO,EAAE,MAAM,QAAA,EAAE,MAAM,QAAA,EAAE,EAAA;;;;KAC1B;IAEK,6BAAK,GAAX,UAAY,IAAkB;;;;gBAC5B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;oBAChB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,UAAA,CAAC;wBACvC,KAAI,CAAC,MAAM,GAAG,SAAS,CAAA;wBACvB,MAAM,CAAC,CAAA;oBACT,CAAC,CAAC,CAAA;iBACH;gBACD,sBAAO,IAAI,CAAC,MAAM,EAAA;;;KACnB;IAEY,mCAAW,GAAxB,UAAyB,IAAkB;;;;;4BAGrC,qBAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAA;;wBADd,UAAU,GAClB,CAAA,SAAsB,CAAA,kBADJ;wBAEtB,sBAAO,MAAM,CAAC,IAAI,CAAC,UAAU,CAAC,EAAA;;;;KAC/B;IAEY,mCAAW,GAAxB,UAAyB,KAAa;;;;;;4BAGhC,qBAAM,IAAI,CAAC,KAAK,EAAE,EAAA;;wBADV,YAAY,GACpB,CAAA,SAAkB,CAAA,oBADE;wBAExB,sBAAO,MAAA,YAAY,CAAC,KAAK,CAAC,0CAAE,IAAI,EAAA;;;;KACjC;IAEY,sCAAc,GAA3B,UAA4B,IAAkB;;;;;4BAGxC,qBAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAA;;wBADd,YAAY,GACpB,CAAA,SAAsB,CAAA,oBADF;wBAExB,sBAAO,IAAA,oBAAY,EAAC,YAAuC,CAAC,EAAA;;;;KAC7D;IAEM,mCAAW,GAAlB,UAAmB,MAAc,EAAE,IAAwB;QAA3D,iBAqCC;QArCkC,qBAAA,EAAA,SAAwB;QACjD,IAAA,OAAO,GAAiB,MAAM,QAAvB,EAAE,KAAK,GAAU,MAAM,MAAhB,EAAE,GAAG,GAAK,MAAM,IAAX,CAAW;QAEpC,IAAA,KAIE,IAAI,QAJK,EAAX,OAAO,mBAAG,CAAC,KAAA,EACX,MAAM,GAGJ,IAAI,OAHA,EACN,KAEE,IAAI,WAFQ,EAAd,UAAU,mBAAG,CAAC,KAAA,EACd,KACE,IAAI,eADmB,EAAzB,cAAc,mBAAG,cAAO,CAAC,KAAA,CACnB;QACR,OAAO,IAAA,uBAAgB,EAAU,UAAM,QAAQ;;;;;wBAC7C,cAAc,CAAC,yBAAyB,CAAC,CAAA;wBACnC,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAA;wBAClB,qBAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAA;;wBAAjC,MAAM,GAAK,CAAA,SAAsB,CAAA,OAA3B;wBACA,qBAAM,MAAM,CAAC,WAAW,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,wBACrD,IAAI,KACP,YAAY,EAAE,OAAO,GAAG,UAAU,IAClC,EAAA;;wBAHI,KAAK,GAAG,SAGZ;4CAEO,CAAC;4BACR,IAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;4BACrB,IAAI,MAAM,EAAE;gCACV,aAAa;gCACb,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;6BACrB;4BACD,IAAM,QAAQ,GAAG,UAAG,MAAM,cAAI,MAAM,CAAC,OAAO,cAAI,IAAI,CAAC,KAAK,cAAI,IAAI,CAAC,GAAG,CAAE,CAAA;4BACxE,aAAa;4BACb,IAAI,CAAC,OAAO,GAAG,OAAO,CAAA;4BACtB,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAA;4BACxB,QAAQ,CAAC,IAAI,CAAC;gCACZ,aAAa;gCACb,GAAG,EAAE,UAAC,GAAW,IAAK,OAAC,IAAgC,CAAC,GAAG,CAAC,EAAtC,CAAsC;gCAC5D,EAAE,EAAE,cAAM,OAAA,QAAQ,EAAR,CAAQ;gCAClB,aAAa;gCACb,MAAM,EAAE,cAAM,OAAA,IAAI,EAAJ,CAAI;6BACnB,CAAC,CAAA;;wBAhBJ,KAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE;oCAA5B,CAAC;yBAiBT;wBACD,QAAQ,CAAC,QAAQ,EAAE,CAAA;;;;aACpB,EAAE,MAAM,CAAC,CAAA;IACZ,CAAC;IAED,uEAAuE;IACjE,4CAAoB,GAA1B,UAA2B,QAAkB;;;gBAC3C,sBAAO,EAAE,cAAc,EAAE,CAAC,EAAE,EAAA;;;KAC7B;IAEM,qCAAa,GAApB,cAA8B,CAAC;IAjGjB,0BAAY,GAAG;QAC3B,eAAe;QACf,eAAe;QACf,gBAAgB;KACjB,CAAA;IA8FH,oBAAC;CAAA,AAtGD,CAA2C,oCAAsB,GAsGhE;kBAtGoB,aAAa"}

package/dist/BigWigAdapter/configSchema.js

@@ -1,22 +1,18 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _default = (0, _configuration.ConfigurationSchema)('BigWigAdapter', {
-  bigWigLocation: {
-    type: 'fileLocation',
-    defaultValue: {
-      uri: '/path/to/my.bw',
-      locationType: 'UriLocation'
-    }
-  }
-}, {
-  explicitlyTyped: true
-});
-
-exports.default = _default;
+Object.defineProperty(exports, "__esModule", { value: true });
+var configuration_1 = require("@jbrowse/core/configuration");
+exports.default = (0, configuration_1.ConfigurationSchema)('BigWigAdapter', {
+    bigWigLocation: {
+        type: 'fileLocation',
+        defaultValue: {
+            uri: '/path/to/my.bw',
+            locationType: 'UriLocation',
+        },
+    },
+    source: {
+        type: 'string',
+        defaultValue: '',
+        description: 'Used for multiwiggle',
+    },
+}, { explicitlyTyped: true });
+//# sourceMappingURL=configSchema.js.map

package/dist/BigWigAdapter/configSchema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/BigWigAdapter/configSchema.ts"],"names":[],"mappings":";;AAAA,6DAAiE;AAEjE,kBAAe,IAAA,mCAAmB,EAChC,eAAe,EACf;IACE,cAAc,EAAE;QACd,IAAI,EAAE,cAAc;QACpB,YAAY,EAAE;YACZ,GAAG,EAAE,gBAAgB;YACrB,YAAY,EAAE,aAAa;SAC5B;KACF;IACD,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,EAAE;QAChB,WAAW,EAAE,sBAAsB;KACpC;CACF,EACD,EAAE,eAAe,EAAE,IAAI,EAAE,CAC1B,CAAA"}

package/dist/BigWigAdapter/index.d.ts

@@ -1 +1,3 @@
-export { default as configSchema } from './configSchema';
+import PluginManager from '@jbrowse/core/PluginManager';
+declare const _default: (pluginManager: PluginManager) => void;
+export default _default;

package/dist/BigWigAdapter/index.js

@@ -1,15 +1,45 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
 });
-Object.defineProperty(exports, "configSchema", {
-  enumerable: true,
-  get: function get() {
-    return _configSchema.default;
-  }
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var AdapterType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/AdapterType"));
+var configSchema_1 = __importDefault(require("./configSchema"));
+exports.default = (function (pluginManager) {
+    pluginManager.addAdapterType(function () {
+        return new AdapterType_1.default({
+            name: 'BigWigAdapter',
+            configSchema: configSchema_1.default,
+            adapterCapabilities: [
+                'hasResolution',
+                'hasLocalStats',
+                'hasGlobalStats',
+            ],
+            getAdapterClass: function () { return Promise.resolve().then(function () { return __importStar(require('./BigWigAdapter')); }).then(function (r) { return r.default; }); },
+        });
+    });
 });
-
-var _configSchema = _interopRequireDefault(require("./configSchema"));
+//# sourceMappingURL=index.js.map

package/dist/BigWigAdapter/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BigWigAdapter/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AACA,gGAAyE;AACzE,gEAAyC;AAEzC,mBAAe,UAAC,aAA4B;IAC1C,aAAa,CAAC,cAAc,CAC1B;QACE,OAAA,IAAI,qBAAW,CAAC;YACd,IAAI,EAAE,eAAe;YACrB,YAAY,wBAAA;YACZ,mBAAmB,EAAE;gBACnB,eAAe;gBACf,eAAe;gBACf,gBAAgB;aACjB;YACD,eAAe,EAAE,cAAM,OAAA,iEAAO,iBAAiB,OAAE,IAAI,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,OAAO,EAAT,CAAS,CAAC,EAA9C,CAA8C;SACtE,CAAC;IATF,CASE,CACL,CAAA;AACH,CAAC,EAAA"}