@jbrowse/plugin-wiggle 1.7.11 → 2.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BigWigAdapter/BigWigAdapter.d.ts +8 -7
- package/dist/BigWigAdapter/BigWigAdapter.js +205 -283
- package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -0
- package/dist/BigWigAdapter/configSchema.js +17 -21
- package/dist/BigWigAdapter/configSchema.js.map +1 -0
- package/dist/BigWigAdapter/index.d.ts +3 -1
- package/dist/BigWigAdapter/index.js +42 -12
- package/dist/BigWigAdapter/index.js.map +1 -0
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +68 -0
- package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
- package/dist/CreateMultiWiggleExtension/index.d.ts +2 -0
- package/dist/CreateMultiWiggleExtension/index.js +111 -0
- package/dist/CreateMultiWiggleExtension/index.js.map +1 -0
- package/dist/DensityRenderer/DensityRenderer.d.ts +6 -0
- package/dist/DensityRenderer/DensityRenderer.js +74 -0
- package/dist/DensityRenderer/DensityRenderer.js.map +1 -0
- package/dist/DensityRenderer/configSchema.d.ts +2 -0
- package/dist/DensityRenderer/configSchema.js +10 -0
- package/dist/DensityRenderer/configSchema.js.map +1 -0
- package/dist/DensityRenderer/index.d.ts +3 -6
- package/dist/DensityRenderer/index.js +17 -135
- package/dist/DensityRenderer/index.js.map +1 -0
- package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +4 -2
- package/dist/LinePlotRenderer/LinePlotRenderer.js +83 -168
- package/dist/LinePlotRenderer/LinePlotRenderer.js.map +1 -0
- package/dist/LinePlotRenderer/configSchema.d.ts +2 -2
- package/dist/LinePlotRenderer/configSchema.js +15 -69
- package/dist/LinePlotRenderer/configSchema.js.map +1 -0
- package/dist/LinePlotRenderer/index.d.ts +3 -3
- package/dist/LinePlotRenderer/index.js +17 -32
- package/dist/LinePlotRenderer/index.js.map +1 -0
- package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +6 -2
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js +88 -106
- package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +86 -107
- package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
- package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +6 -11
- package/dist/LinearWiggleDisplay/components/Tooltip.js +47 -163
- package/dist/LinearWiggleDisplay/components/Tooltip.js.map +1 -0
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +44 -50
- package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
- package/dist/LinearWiggleDisplay/components/YScaleBar.js +24 -31
- package/dist/LinearWiggleDisplay/components/YScaleBar.js.map +1 -0
- package/dist/LinearWiggleDisplay/index.d.ts +7 -3
- package/dist/LinearWiggleDisplay/index.js +27 -41
- package/dist/LinearWiggleDisplay/index.js.map +1 -0
- package/dist/LinearWiggleDisplay/models/configSchema.js +65 -69
- package/dist/LinearWiggleDisplay/models/configSchema.js.map +1 -0
- package/dist/LinearWiggleDisplay/models/model.d.ts +39 -18
- package/dist/LinearWiggleDisplay/models/model.js +538 -696
- package/dist/LinearWiggleDisplay/models/model.js.map +1 -0
- package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js +135 -0
- package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
- package/dist/MultiDensityRenderer/configSchema.d.ts +2 -0
- package/dist/MultiDensityRenderer/configSchema.js +10 -0
- package/dist/MultiDensityRenderer/configSchema.js.map +1 -0
- package/dist/MultiDensityRenderer/index.d.ts +3 -0
- package/dist/MultiDensityRenderer/index.js +19 -0
- package/dist/MultiDensityRenderer/index.js.map +1 -0
- package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
- package/dist/MultiLineRenderer/MultiLineRenderer.js +124 -0
- package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
- package/dist/MultiLineRenderer/configSchema.d.ts +2 -0
- package/dist/MultiLineRenderer/configSchema.js +23 -0
- package/dist/MultiLineRenderer/configSchema.js.map +1 -0
- package/dist/MultiLineRenderer/index.d.ts +3 -0
- package/dist/MultiLineRenderer/index.js +19 -0
- package/dist/MultiLineRenderer/index.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +239 -0
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
- package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +91 -0
- package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +78 -0
- package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +144 -0
- package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
- package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js +26 -0
- package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
- package/dist/MultiLinearWiggleDisplay/components/util.js +38 -0
- package/dist/MultiLinearWiggleDisplay/components/util.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/index.d.ts +3 -0
- package/dist/MultiLinearWiggleDisplay/index.js +23 -0
- package/dist/MultiLinearWiggleDisplay/index.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js +77 -0
- package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
- package/dist/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
- package/dist/MultiLinearWiggleDisplay/models/model.js +675 -0
- package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -0
- package/dist/MultiQuantitativeTrack/index.d.ts +3 -0
- package/dist/MultiQuantitativeTrack/index.js +19 -0
- package/dist/MultiQuantitativeTrack/index.js.map +1 -0
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +131 -0
- package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
- package/dist/MultiRowLineRenderer/configSchema.d.ts +2 -0
- package/dist/MultiRowLineRenderer/configSchema.js +23 -0
- package/dist/MultiRowLineRenderer/configSchema.js.map +1 -0
- package/dist/MultiRowLineRenderer/index.d.ts +3 -0
- package/dist/MultiRowLineRenderer/index.js +19 -0
- package/dist/MultiRowLineRenderer/index.js.map +1 -0
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +164 -0
- package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
- package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
- package/dist/MultiRowXYPlotRenderer/configSchema.js +31 -0
- package/dist/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
- package/dist/MultiRowXYPlotRenderer/index.d.ts +3 -0
- package/dist/MultiRowXYPlotRenderer/index.js +19 -0
- package/dist/MultiRowXYPlotRenderer/index.js.map +1 -0
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +28 -0
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +244 -0
- package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
- package/dist/MultiWiggleAdapter/configSchema.d.ts +2 -0
- package/dist/MultiWiggleAdapter/configSchema.js +14 -0
- package/dist/MultiWiggleAdapter/configSchema.js.map +1 -0
- package/dist/MultiWiggleAdapter/index.d.ts +3 -0
- package/dist/MultiWiggleAdapter/index.js +47 -0
- package/dist/MultiWiggleAdapter/index.js.map +1 -0
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +139 -0
- package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
- package/dist/MultiWiggleAddTrackWidget/index.d.ts +3 -0
- package/dist/MultiWiggleAddTrackWidget/index.js +19 -0
- package/dist/MultiWiggleAddTrackWidget/index.js.map +1 -0
- package/dist/MultiWiggleRendering.d.ts +21 -0
- package/dist/MultiWiggleRendering.js +164 -0
- package/dist/MultiWiggleRendering.js.map +1 -0
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +153 -0
- package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
- package/dist/MultiXYPlotRenderer/configSchema.d.ts +2 -0
- package/dist/MultiXYPlotRenderer/configSchema.js +31 -0
- package/dist/MultiXYPlotRenderer/configSchema.js.map +1 -0
- package/dist/MultiXYPlotRenderer/index.d.ts +3 -0
- package/dist/MultiXYPlotRenderer/index.js +19 -0
- package/dist/MultiXYPlotRenderer/index.js.map +1 -0
- package/dist/QuantitativeTrack/index.d.ts +3 -0
- package/dist/QuantitativeTrack/index.js +19 -0
- package/dist/QuantitativeTrack/index.js.map +1 -0
- package/dist/Tooltip.d.ts +20 -0
- package/dist/Tooltip.js +124 -0
- package/dist/Tooltip.js.map +1 -0
- package/dist/WiggleBaseRenderer.d.ts +11 -12
- package/dist/WiggleBaseRenderer.js +132 -129
- package/dist/WiggleBaseRenderer.js.map +1 -0
- package/dist/WiggleRPC/rpcMethods.d.ts +17 -1
- package/dist/WiggleRPC/rpcMethods.js +258 -289
- package/dist/WiggleRPC/rpcMethods.js.map +1 -0
- package/dist/WiggleRendering.d.ts +1 -1
- package/dist/WiggleRendering.js +103 -102
- package/dist/WiggleRendering.js.map +1 -0
- package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +4 -1
- package/dist/XYPlotRenderer/XYPlotRenderer.js +147 -194
- package/dist/XYPlotRenderer/XYPlotRenderer.js.map +1 -0
- package/dist/XYPlotRenderer/configSchema.d.ts +2 -0
- package/dist/XYPlotRenderer/configSchema.js +31 -0
- package/dist/XYPlotRenderer/configSchema.js.map +1 -0
- package/dist/XYPlotRenderer/index.d.ts +7 -3
- package/dist/XYPlotRenderer/index.js +21 -32
- package/dist/XYPlotRenderer/index.js.map +1 -0
- package/dist/configSchema.js +42 -74
- package/dist/configSchema.js.map +1 -0
- package/dist/drawxy.d.ts +50 -0
- package/dist/drawxy.js +411 -0
- package/dist/drawxy.js.map +1 -0
- package/dist/index.d.ts +194 -85
- package/dist/index.js +139 -247
- package/dist/index.js.map +1 -0
- package/dist/util.d.ts +34 -1
- package/dist/util.js +270 -143
- package/dist/util.js.map +1 -0
- package/esm/BigWigAdapter/BigWigAdapter.d.ts +25 -0
- package/esm/BigWigAdapter/BigWigAdapter.js +81 -0
- package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -0
- package/esm/BigWigAdapter/configSchema.d.ts +2 -0
- package/esm/BigWigAdapter/configSchema.js +16 -0
- package/esm/BigWigAdapter/configSchema.js.map +1 -0
- package/esm/BigWigAdapter/index.d.ts +3 -0
- package/esm/BigWigAdapter/index.js +15 -0
- package/esm/BigWigAdapter/index.js.map +1 -0
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +26 -0
- package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
- package/esm/CreateMultiWiggleExtension/index.d.ts +2 -0
- package/esm/CreateMultiWiggleExtension/index.js +51 -0
- package/esm/CreateMultiWiggleExtension/index.js.map +1 -0
- package/esm/DensityRenderer/DensityRenderer.d.ts +6 -0
- package/esm/DensityRenderer/DensityRenderer.js +8 -0
- package/esm/DensityRenderer/DensityRenderer.js.map +1 -0
- package/esm/DensityRenderer/configSchema.d.ts +2 -0
- package/esm/DensityRenderer/configSchema.js +5 -0
- package/esm/DensityRenderer/configSchema.js.map +1 -0
- package/esm/DensityRenderer/index.d.ts +3 -0
- package/esm/DensityRenderer/index.js +12 -0
- package/esm/DensityRenderer/index.js.map +1 -0
- package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +6 -0
- package/esm/LinePlotRenderer/LinePlotRenderer.js +13 -0
- package/esm/LinePlotRenderer/LinePlotRenderer.js.map +1 -0
- package/esm/LinePlotRenderer/configSchema.d.ts +2 -0
- package/esm/LinePlotRenderer/configSchema.js +11 -0
- package/esm/LinePlotRenderer/configSchema.js.map +1 -0
- package/esm/LinePlotRenderer/index.d.ts +3 -0
- package/esm/LinePlotRenderer/index.js +12 -0
- package/esm/LinePlotRenderer/index.js.map +1 -0
- package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +14 -0
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js +48 -0
- package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
- package/esm/LinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
- package/esm/LinearWiggleDisplay/components/SetMinMaxDialog.js +46 -0
- package/esm/LinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
- package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +19 -0
- package/esm/LinearWiggleDisplay/components/Tooltip.js +34 -0
- package/esm/LinearWiggleDisplay/components/Tooltip.js.map +1 -0
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +8 -0
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +29 -0
- package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
- package/esm/LinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
- package/esm/LinearWiggleDisplay/components/YScaleBar.js +9 -0
- package/esm/LinearWiggleDisplay/components/YScaleBar.js.map +1 -0
- package/esm/LinearWiggleDisplay/index.d.ts +7 -0
- package/esm/LinearWiggleDisplay/index.js +21 -0
- package/esm/LinearWiggleDisplay/index.js.map +1 -0
- package/esm/LinearWiggleDisplay/models/configSchema.d.ts +2 -0
- package/esm/LinearWiggleDisplay/models/configSchema.js +64 -0
- package/esm/LinearWiggleDisplay/models/configSchema.js.map +1 -0
- package/esm/LinearWiggleDisplay/models/model.d.ts +309 -0
- package/esm/LinearWiggleDisplay/models/model.js +449 -0
- package/esm/LinearWiggleDisplay/models/model.js.map +1 -0
- package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js +36 -0
- package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
- package/esm/MultiDensityRenderer/configSchema.d.ts +2 -0
- package/esm/MultiDensityRenderer/configSchema.js +5 -0
- package/esm/MultiDensityRenderer/configSchema.js.map +1 -0
- package/esm/MultiDensityRenderer/index.d.ts +3 -0
- package/esm/MultiDensityRenderer/index.js +12 -0
- package/esm/MultiDensityRenderer/index.js.map +1 -0
- package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
- package/esm/MultiLineRenderer/MultiLineRenderer.js +25 -0
- package/esm/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
- package/esm/MultiLineRenderer/configSchema.d.ts +2 -0
- package/esm/MultiLineRenderer/configSchema.js +18 -0
- package/esm/MultiLineRenderer/configSchema.js.map +1 -0
- package/esm/MultiLineRenderer/index.d.ts +3 -0
- package/esm/MultiLineRenderer/index.js +12 -0
- package/esm/MultiLineRenderer/index.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +162 -0
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
- package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +46 -0
- package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +43 -0
- package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +99 -0
- package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
- package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js +9 -0
- package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
- package/esm/MultiLinearWiggleDisplay/components/util.js +31 -0
- package/esm/MultiLinearWiggleDisplay/components/util.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/index.d.ts +3 -0
- package/esm/MultiLinearWiggleDisplay/index.js +18 -0
- package/esm/MultiLinearWiggleDisplay/index.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js +74 -0
- package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
- package/esm/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
- package/esm/MultiLinearWiggleDisplay/models/model.js +570 -0
- package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -0
- package/esm/MultiQuantitativeTrack/index.d.ts +3 -0
- package/esm/MultiQuantitativeTrack/index.js +14 -0
- package/esm/MultiQuantitativeTrack/index.js.map +1 -0
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +33 -0
- package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
- package/esm/MultiRowLineRenderer/configSchema.d.ts +2 -0
- package/esm/MultiRowLineRenderer/configSchema.js +18 -0
- package/esm/MultiRowLineRenderer/configSchema.js.map +1 -0
- package/esm/MultiRowLineRenderer/index.d.ts +3 -0
- package/esm/MultiRowLineRenderer/index.js +12 -0
- package/esm/MultiRowLineRenderer/index.js.map +1 -0
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +39 -0
- package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
- package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
- package/esm/MultiRowXYPlotRenderer/configSchema.js +26 -0
- package/esm/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
- package/esm/MultiRowXYPlotRenderer/index.d.ts +3 -0
- package/esm/MultiRowXYPlotRenderer/index.js +12 -0
- package/esm/MultiRowXYPlotRenderer/index.js.map +1 -0
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +28 -0
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +87 -0
- package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
- package/esm/MultiWiggleAdapter/configSchema.d.ts +2 -0
- package/esm/MultiWiggleAdapter/configSchema.js +12 -0
- package/esm/MultiWiggleAdapter/configSchema.js.map +1 -0
- package/esm/MultiWiggleAdapter/index.d.ts +3 -0
- package/esm/MultiWiggleAdapter/index.js +15 -0
- package/esm/MultiWiggleAdapter/index.js.map +1 -0
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +87 -0
- package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
- package/esm/MultiWiggleAddTrackWidget/index.d.ts +3 -0
- package/esm/MultiWiggleAddTrackWidget/index.js +12 -0
- package/esm/MultiWiggleAddTrackWidget/index.js.map +1 -0
- package/esm/MultiWiggleRendering.d.ts +21 -0
- package/esm/MultiWiggleRendering.js +75 -0
- package/esm/MultiWiggleRendering.js.map +1 -0
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +28 -0
- package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
- package/esm/MultiXYPlotRenderer/configSchema.d.ts +2 -0
- package/esm/MultiXYPlotRenderer/configSchema.js +26 -0
- package/esm/MultiXYPlotRenderer/configSchema.js.map +1 -0
- package/esm/MultiXYPlotRenderer/index.d.ts +3 -0
- package/esm/MultiXYPlotRenderer/index.js +12 -0
- package/esm/MultiXYPlotRenderer/index.js.map +1 -0
- package/esm/QuantitativeTrack/index.d.ts +3 -0
- package/esm/QuantitativeTrack/index.js +14 -0
- package/esm/QuantitativeTrack/index.js.map +1 -0
- package/esm/Tooltip.d.ts +20 -0
- package/esm/Tooltip.js +71 -0
- package/esm/Tooltip.js.map +1 -0
- package/esm/WiggleBaseRenderer.d.ts +54 -0
- package/esm/WiggleBaseRenderer.js +36 -0
- package/esm/WiggleBaseRenderer.js.map +1 -0
- package/esm/WiggleRPC/rpcMethods.d.ts +47 -0
- package/esm/WiggleRPC/rpcMethods.js +112 -0
- package/esm/WiggleRPC/rpcMethods.js.map +1 -0
- package/esm/WiggleRendering.d.ts +16 -0
- package/esm/WiggleRendering.js +36 -0
- package/esm/WiggleRendering.js.map +1 -0
- package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +7 -0
- package/esm/XYPlotRenderer/XYPlotRenderer.js +26 -0
- package/esm/XYPlotRenderer/XYPlotRenderer.js.map +1 -0
- package/esm/XYPlotRenderer/configSchema.d.ts +2 -0
- package/esm/XYPlotRenderer/configSchema.js +26 -0
- package/esm/XYPlotRenderer/configSchema.js.map +1 -0
- package/esm/XYPlotRenderer/index.d.ts +7 -0
- package/esm/XYPlotRenderer/index.js +13 -0
- package/esm/XYPlotRenderer/index.js.map +1 -0
- package/esm/configSchema.d.ts +2 -0
- package/esm/configSchema.js +41 -0
- package/esm/configSchema.js.map +1 -0
- package/esm/drawxy.d.ts +50 -0
- package/esm/drawxy.js +286 -0
- package/esm/drawxy.js.map +1 -0
- package/esm/index.d.ts +975 -0
- package/esm/index.js +90 -0
- package/esm/index.js.map +1 -0
- package/esm/util.d.ts +74 -0
- package/esm/util.js +231 -0
- package/esm/util.js.map +1 -0
- package/package.json +32 -18
- package/src/BigWigAdapter/BigWigAdapter.ts +53 -35
- package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +10 -10
- package/src/BigWigAdapter/configSchema.ts +5 -0
- package/src/BigWigAdapter/index.ts +19 -1
- package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +66 -0
- package/src/CreateMultiWiggleExtension/index.ts +57 -0
- package/src/DensityRenderer/DensityRenderer.test.js +8 -2
- package/src/DensityRenderer/DensityRenderer.ts +14 -0
- package/src/DensityRenderer/__snapshots__/DensityRenderer.test.js.snap +8 -0
- package/src/{LinePlotRenderer/index.js → DensityRenderer/configSchema.ts} +5 -5
- package/src/DensityRenderer/index.ts +14 -53
- package/src/LinePlotRenderer/LinePlotRenderer.ts +19 -0
- package/src/LinePlotRenderer/configSchema.ts +16 -0
- package/src/LinePlotRenderer/index.ts +16 -0
- package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +26 -31
- package/src/LinearWiggleDisplay/components/SetMinMaxDialog.tsx +13 -11
- package/src/LinearWiggleDisplay/components/Tooltip.tsx +6 -121
- package/src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx +9 -4
- package/src/LinearWiggleDisplay/index.ts +24 -3
- package/src/LinearWiggleDisplay/models/model.tsx +139 -224
- package/src/MultiDensityRenderer/MultiDensityRenderer.ts +39 -0
- package/src/MultiDensityRenderer/configSchema.ts +10 -0
- package/src/MultiDensityRenderer/index.ts +16 -0
- package/src/MultiLineRenderer/MultiLineRenderer.ts +29 -0
- package/src/MultiLineRenderer/configSchema.ts +24 -0
- package/src/MultiLineRenderer/index.ts +17 -0
- package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +322 -0
- package/src/MultiLinearWiggleDisplay/components/SetMinMaxDialog.tsx +113 -0
- package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +76 -0
- package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +261 -0
- package/src/MultiLinearWiggleDisplay/components/YScaleBar.tsx +25 -0
- package/src/MultiLinearWiggleDisplay/components/declare.d.ts +1 -0
- package/src/MultiLinearWiggleDisplay/components/util.test.ts +69 -0
- package/src/MultiLinearWiggleDisplay/components/util.ts +33 -0
- package/src/MultiLinearWiggleDisplay/index.ts +20 -0
- package/src/MultiLinearWiggleDisplay/models/configSchema.ts +94 -0
- package/src/MultiLinearWiggleDisplay/models/model.tsx +721 -0
- package/src/MultiQuantitativeTrack/index.ts +26 -0
- package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +36 -0
- package/src/MultiRowLineRenderer/configSchema.ts +25 -0
- package/src/MultiRowLineRenderer/index.ts +16 -0
- package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +43 -0
- package/src/MultiRowXYPlotRenderer/configSchema.ts +33 -0
- package/src/MultiRowXYPlotRenderer/index.ts +16 -0
- package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +120 -0
- package/src/MultiWiggleAdapter/configSchema.ts +16 -0
- package/src/MultiWiggleAdapter/index.ts +20 -0
- package/src/MultiWiggleAdapter/test_data/volvox.bw +0 -0
- package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +130 -0
- package/src/MultiWiggleAddTrackWidget/index.ts +17 -0
- package/src/MultiWiggleRendering.tsx +125 -0
- package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +32 -0
- package/src/MultiXYPlotRenderer/configSchema.ts +31 -0
- package/src/MultiXYPlotRenderer/index.ts +17 -0
- package/src/QuantitativeTrack/index.ts +26 -0
- package/src/Tooltip.tsx +123 -0
- package/src/WiggleBaseRenderer.tsx +17 -11
- package/src/WiggleRPC/rpcMethods.ts +68 -17
- package/src/WiggleRendering.tsx +12 -18
- package/src/XYPlotRenderer/XYPlotRenderer.test.js +3 -1
- package/src/XYPlotRenderer/XYPlotRenderer.ts +19 -124
- package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.js.snap +8 -0
- package/src/XYPlotRenderer/configSchema.ts +32 -0
- package/src/XYPlotRenderer/index.ts +16 -10
- package/src/__snapshots__/WiggleRendering.test.js.snap +0 -2
- package/src/configSchema.ts +0 -28
- package/src/declare.d.ts +0 -1
- package/src/drawxy.ts +387 -0
- package/src/index.ts +75 -129
- package/src/util.ts +174 -0
- package/dist/BigWigAdapter/BigWigAdapter.test.js +0 -157
- package/dist/DensityRenderer/DensityRenderer.test.js +0 -88
- package/dist/WiggleRendering.test.js +0 -52
- package/dist/XYPlotRenderer/XYPlotRenderer.test.js +0 -87
- package/dist/declare.d.js +0 -1
- package/dist/index.test.js +0 -24
- package/dist/util.test.js +0 -66
- package/src/LinePlotRenderer/LinePlotRenderer.js +0 -91
- package/src/LinePlotRenderer/configSchema.js +0 -68
|
@@ -0,0 +1,26 @@
|
|
|
1
|
+
import { ConfigurationSchema } from '@jbrowse/core/configuration';
|
|
2
|
+
import { types } from 'mobx-state-tree';
|
|
3
|
+
import ConfigSchema from '../configSchema';
|
|
4
|
+
const configSchema = ConfigurationSchema('MultiXYPlotRenderer', {
|
|
5
|
+
filled: {
|
|
6
|
+
type: 'boolean',
|
|
7
|
+
defaultValue: true,
|
|
8
|
+
},
|
|
9
|
+
displayCrossHatches: {
|
|
10
|
+
type: 'boolean',
|
|
11
|
+
description: 'choose to draw cross hatches (sideways lines)',
|
|
12
|
+
defaultValue: false,
|
|
13
|
+
},
|
|
14
|
+
summaryScoreMode: {
|
|
15
|
+
type: 'stringEnum',
|
|
16
|
+
model: types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
|
|
17
|
+
description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
|
|
18
|
+
defaultValue: 'avg',
|
|
19
|
+
},
|
|
20
|
+
minSize: {
|
|
21
|
+
type: 'number',
|
|
22
|
+
defaultValue: 0,
|
|
23
|
+
},
|
|
24
|
+
}, { baseConfiguration: ConfigSchema, explicitlyTyped: true });
|
|
25
|
+
export default configSchema;
|
|
26
|
+
//# sourceMappingURL=configSchema.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/MultiXYPlotRenderer/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AACvC,OAAO,YAAY,MAAM,iBAAiB,CAAA;AAE1C,MAAM,YAAY,GAAG,mBAAmB,CACtC,qBAAqB,EACrB;IACE,MAAM,EAAE;QACN,IAAI,EAAE,SAAS;QACf,YAAY,EAAE,IAAI;KACnB;IACD,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;IACD,gBAAgB,EAAE;QAChB,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,KAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;QACzE,WAAW,EACT,oGAAoG;QACtG,YAAY,EAAE,KAAK;KACpB;IACD,OAAO,EAAE;QACP,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;KAChB;CACF,EACD,EAAE,iBAAiB,EAAE,YAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AACD,eAAe,YAAY,CAAA"}
|
|
@@ -0,0 +1,12 @@
|
|
|
1
|
+
import ReactComponent from '../MultiWiggleRendering';
|
|
2
|
+
import MultiXYPlotRenderer from './MultiXYPlotRenderer';
|
|
3
|
+
import configSchema from './configSchema';
|
|
4
|
+
export default (pluginManager) => {
|
|
5
|
+
pluginManager.addRendererType(() => new MultiXYPlotRenderer({
|
|
6
|
+
name: 'MultiXYPlotRenderer',
|
|
7
|
+
ReactComponent,
|
|
8
|
+
configSchema,
|
|
9
|
+
pluginManager,
|
|
10
|
+
}));
|
|
11
|
+
};
|
|
12
|
+
//# sourceMappingURL=index.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiXYPlotRenderer/index.ts"],"names":[],"mappings":"AAEA,OAAO,cAAc,MAAM,yBAAyB,CAAA;AACpD,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,eAAe,CAC3B,GAAG,EAAE,CACH,IAAI,mBAAmB,CAAC;QACtB,IAAI,EAAE,qBAAqB;QAC3B,cAAc;QACd,YAAY;QACZ,aAAa;KACd,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
|
|
@@ -0,0 +1,14 @@
|
|
|
1
|
+
import { ConfigurationSchema } from '@jbrowse/core/configuration';
|
|
2
|
+
import { createBaseTrackConfig, createBaseTrackModel, } from '@jbrowse/core/pluggableElementTypes/models';
|
|
3
|
+
import TrackType from '@jbrowse/core/pluggableElementTypes/TrackType';
|
|
4
|
+
export default (pluginManager) => {
|
|
5
|
+
pluginManager.addTrackType(() => {
|
|
6
|
+
const configSchema = ConfigurationSchema('QuantitativeTrack', {}, { baseConfiguration: createBaseTrackConfig(pluginManager) });
|
|
7
|
+
return new TrackType({
|
|
8
|
+
name: 'QuantitativeTrack',
|
|
9
|
+
configSchema,
|
|
10
|
+
stateModel: createBaseTrackModel(pluginManager, 'QuantitativeTrack', configSchema),
|
|
11
|
+
});
|
|
12
|
+
});
|
|
13
|
+
};
|
|
14
|
+
//# sourceMappingURL=index.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/QuantitativeTrack/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,EACL,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,4CAA4C,CAAA;AACnD,OAAO,SAAS,MAAM,+CAA+C,CAAA;AAGrE,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,mBAAmB,CACtC,mBAAmB,EACnB,EAAE,EACF,EAAE,iBAAiB,EAAE,qBAAqB,CAAC,aAAa,CAAC,EAAE,CAC5D,CAAA;QACD,OAAO,IAAI,SAAS,CAAC;YACnB,IAAI,EAAE,mBAAmB;YACzB,YAAY;YACZ,UAAU,EAAE,oBAAoB,CAC9B,aAAa,EACb,mBAAmB,EACnB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
|
package/esm/Tooltip.d.ts
ADDED
|
@@ -0,0 +1,20 @@
|
|
|
1
|
+
import React from 'react';
|
|
2
|
+
import { Feature } from '@jbrowse/core/util';
|
|
3
|
+
declare type Coord = [number, number];
|
|
4
|
+
export declare type TooltipContentsComponent = React.ForwardRefExoticComponent<{
|
|
5
|
+
feature: Feature;
|
|
6
|
+
model: any;
|
|
7
|
+
} & React.RefAttributes<HTMLDivElement>>;
|
|
8
|
+
declare function Tooltip({ model, height, clientMouseCoord, offsetMouseCoord, clientRect, TooltipContents, useClientY, }: {
|
|
9
|
+
model: {
|
|
10
|
+
featureUnderMouse: Feature;
|
|
11
|
+
};
|
|
12
|
+
useClientY?: boolean;
|
|
13
|
+
height: number;
|
|
14
|
+
clientMouseCoord: Coord;
|
|
15
|
+
offsetMouseCoord: Coord;
|
|
16
|
+
clientRect?: DOMRect;
|
|
17
|
+
TooltipContents: TooltipContentsComponent;
|
|
18
|
+
}): JSX.Element | null;
|
|
19
|
+
declare const _default: typeof Tooltip;
|
|
20
|
+
export default _default;
|
package/esm/Tooltip.js
ADDED
|
@@ -0,0 +1,71 @@
|
|
|
1
|
+
import React, { useMemo, useState } from 'react';
|
|
2
|
+
import { observer } from 'mobx-react';
|
|
3
|
+
import { alpha, Portal } from '@mui/material';
|
|
4
|
+
import { makeStyles } from 'tss-react/mui';
|
|
5
|
+
// locals
|
|
6
|
+
import { YSCALEBAR_LABEL_OFFSET, round } from './util';
|
|
7
|
+
import { usePopper } from 'react-popper';
|
|
8
|
+
const useStyles = makeStyles()(theme => ({
|
|
9
|
+
// these styles come from
|
|
10
|
+
// https://github.com/mui-org/material-ui/blob/master/packages/material-ui/src/Tooltip/Tooltip.js
|
|
11
|
+
tooltip: {
|
|
12
|
+
position: 'absolute',
|
|
13
|
+
pointerEvents: 'none',
|
|
14
|
+
backgroundColor: alpha(theme.palette.grey[700], 0.9),
|
|
15
|
+
borderRadius: theme.shape.borderRadius,
|
|
16
|
+
color: theme.palette.common.white,
|
|
17
|
+
fontFamily: theme.typography.fontFamily,
|
|
18
|
+
padding: '4px 8px',
|
|
19
|
+
fontSize: theme.typography.pxToRem(12),
|
|
20
|
+
lineHeight: `${round(14 / 10)}em`,
|
|
21
|
+
maxWidth: 300,
|
|
22
|
+
wordWrap: 'break-word',
|
|
23
|
+
},
|
|
24
|
+
hoverVertical: {
|
|
25
|
+
background: '#333',
|
|
26
|
+
border: 'none',
|
|
27
|
+
width: 1,
|
|
28
|
+
height: '100%',
|
|
29
|
+
top: YSCALEBAR_LABEL_OFFSET,
|
|
30
|
+
cursor: 'default',
|
|
31
|
+
position: 'absolute',
|
|
32
|
+
pointerEvents: 'none',
|
|
33
|
+
},
|
|
34
|
+
}));
|
|
35
|
+
function Tooltip({ model, height, clientMouseCoord, offsetMouseCoord, clientRect, TooltipContents, useClientY, }) {
|
|
36
|
+
const { featureUnderMouse } = model;
|
|
37
|
+
const [width, setWidth] = useState(0);
|
|
38
|
+
const [anchorEl, setAnchorEl] = useState(null);
|
|
39
|
+
const { classes } = useStyles();
|
|
40
|
+
// must be memoized a la https://github.com/popperjs/react-popper/issues/391
|
|
41
|
+
const virtElement = useMemo(() => ({
|
|
42
|
+
getBoundingClientRect: () => {
|
|
43
|
+
const x = clientMouseCoord[0] + width / 2 + 20;
|
|
44
|
+
const y = useClientY ? clientMouseCoord[1] : (clientRect === null || clientRect === void 0 ? void 0 : clientRect.top) || 0;
|
|
45
|
+
return {
|
|
46
|
+
top: y,
|
|
47
|
+
left: x,
|
|
48
|
+
bottom: y,
|
|
49
|
+
right: x,
|
|
50
|
+
width: 0,
|
|
51
|
+
height: 0,
|
|
52
|
+
x,
|
|
53
|
+
y,
|
|
54
|
+
toJSON() { },
|
|
55
|
+
};
|
|
56
|
+
},
|
|
57
|
+
}), [clientRect === null || clientRect === void 0 ? void 0 : clientRect.top, clientMouseCoord, width, useClientY]);
|
|
58
|
+
const { styles, attributes } = usePopper(virtElement, anchorEl);
|
|
59
|
+
return featureUnderMouse ? (React.createElement(React.Fragment, null,
|
|
60
|
+
React.createElement(Portal, null,
|
|
61
|
+
React.createElement("div", { ref: setAnchorEl, className: classes.tooltip,
|
|
62
|
+
// zIndex needed to go over widget drawer
|
|
63
|
+
style: { ...styles.popper, zIndex: 100000 }, ...attributes.popper },
|
|
64
|
+
React.createElement(TooltipContents, { ref: elt => setWidth((elt === null || elt === void 0 ? void 0 : elt.getBoundingClientRect().width) || 0), model: model, feature: featureUnderMouse }))),
|
|
65
|
+
React.createElement("div", { className: classes.hoverVertical, style: {
|
|
66
|
+
left: offsetMouseCoord[0],
|
|
67
|
+
height: height - YSCALEBAR_LABEL_OFFSET * 2,
|
|
68
|
+
} }))) : null;
|
|
69
|
+
}
|
|
70
|
+
export default observer(Tooltip);
|
|
71
|
+
//# sourceMappingURL=Tooltip.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"Tooltip.js","sourceRoot":"","sources":["../src/Tooltip.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAChD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAG1C,SAAS;AACT,OAAO,EAAE,sBAAsB,EAAE,KAAK,EAAE,MAAM,QAAQ,CAAA;AACtD,OAAO,EAAE,SAAS,EAAE,MAAM,cAAc,CAAA;AAExC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,yBAAyB;IACzB,iGAAiG;IACjG,OAAO,EAAE;QACP,QAAQ,EAAE,UAAU;QACpB,aAAa,EAAE,MAAM;QACrB,eAAe,EAAE,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC;QACpD,YAAY,EAAE,KAAK,CAAC,KAAK,CAAC,YAAY;QACtC,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK;QACjC,UAAU,EAAE,KAAK,CAAC,UAAU,CAAC,UAAU;QACvC,OAAO,EAAE,SAAS;QAClB,QAAQ,EAAE,KAAK,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;QACtC,UAAU,EAAE,GAAG,KAAK,CAAC,EAAE,GAAG,EAAE,CAAC,IAAI;QACjC,QAAQ,EAAE,GAAG;QACb,QAAQ,EAAE,YAAY;KACvB;IAED,aAAa,EAAE;QACb,UAAU,EAAE,MAAM;QAClB,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,CAAC;QACR,MAAM,EAAE,MAAM;QACd,GAAG,EAAE,sBAAsB;QAC3B,MAAM,EAAE,SAAS;QACjB,QAAQ,EAAE,UAAU;QACpB,aAAa,EAAE,MAAM;KACtB;CACF,CAAC,CAAC,CAAA;AAWH,SAAS,OAAO,CAAC,EACf,KAAK,EACL,MAAM,EACN,gBAAgB,EAChB,gBAAgB,EAChB,UAAU,EACV,eAAe,EACf,UAAU,GASX;IACC,MAAM,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IACnC,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;IACrC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,CAAwB,IAAI,CAAC,CAAA;IACrE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,4EAA4E;IAC5E,MAAM,WAAW,GAAG,OAAO,CACzB,GAAG,EAAE,CAAC,CAAC;QACL,qBAAqB,EAAE,GAAG,EAAE;YAC1B,MAAM,CAAC,GAAG,gBAAgB,CAAC,CAAC,CAAC,GAAG,KAAK,GAAG,CAAC,GAAG,EAAE,CAAA;YAC9C,MAAM,CAAC,GAAG,UAAU,CAAC,CAAC,CAAC,gBAAgB,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,GAAG,KAAI,CAAC,CAAA;YACjE,OAAO;gBACL,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,CAAC;gBACP,MAAM,EAAE,CAAC;gBACT,KAAK,EAAE,CAAC;gBACR,KAAK,EAAE,CAAC;gBACR,MAAM,EAAE,CAAC;gBACT,CAAC;gBACD,CAAC;gBACD,MAAM,KAAI,CAAC;aACZ,CAAA;QACH,CAAC;KACF,CAAC,EACF,CAAC,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,GAAG,EAAE,gBAAgB,EAAE,KAAK,EAAE,UAAU,CAAC,CACvD,CAAA;IACD,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,GAAG,SAAS,CAAC,WAAW,EAAE,QAAQ,CAAC,CAAA;IAE/D,OAAO,iBAAiB,CAAC,CAAC,CAAC,CACzB;QACE,oBAAC,MAAM;YACL,6BACE,GAAG,EAAE,WAAW,EAChB,SAAS,EAAE,OAAO,CAAC,OAAO;gBAC1B,yCAAyC;gBACzC,KAAK,EAAE,EAAE,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,KACvC,UAAU,CAAC,MAAM;gBAErB,oBAAC,eAAe,IACd,GAAG,EAAE,GAAG,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAA,GAAG,aAAH,GAAG,uBAAH,GAAG,CAAE,qBAAqB,GAAG,KAAK,KAAI,CAAC,CAAC,EAC7D,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,iBAAiB,GAC1B,CACE,CACC;QAET,6BACE,SAAS,EAAE,OAAO,CAAC,aAAa,EAChC,KAAK,EAAE;gBACL,IAAI,EAAE,gBAAgB,CAAC,CAAC,CAAC;gBACzB,MAAM,EAAE,MAAM,GAAG,sBAAsB,GAAG,CAAC;aAC5C,GACD,CACD,CACJ,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC;AAED,eAAe,QAAQ,CAAC,OAAO,CAAC,CAAA"}
|
|
@@ -0,0 +1,54 @@
|
|
|
1
|
+
/// <reference types="react" />
|
|
2
|
+
import FeatureRendererType, { RenderArgs as FeatureRenderArgs, RenderArgsSerialized, RenderArgsDeserialized as FeatureRenderArgsDeserialized, RenderResults, ResultsSerialized, ResultsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
|
|
3
|
+
import { Feature } from '@jbrowse/core/util';
|
|
4
|
+
import { ThemeOptions } from '@mui/material';
|
|
5
|
+
import { ScaleOpts, Source } from './util';
|
|
6
|
+
export interface RenderArgs extends FeatureRenderArgs {
|
|
7
|
+
scaleOpts: ScaleOpts;
|
|
8
|
+
}
|
|
9
|
+
export interface RenderArgsDeserialized extends FeatureRenderArgsDeserialized {
|
|
10
|
+
bpPerPx: number;
|
|
11
|
+
height: number;
|
|
12
|
+
highResolutionScaling: number;
|
|
13
|
+
scaleOpts: ScaleOpts;
|
|
14
|
+
displayCrossHatches: boolean;
|
|
15
|
+
ticks: {
|
|
16
|
+
values: number[];
|
|
17
|
+
};
|
|
18
|
+
themeOptions: ThemeOptions;
|
|
19
|
+
}
|
|
20
|
+
export interface RenderArgsDeserializedWithFeatures extends RenderArgsDeserialized {
|
|
21
|
+
features: Map<string, Feature>;
|
|
22
|
+
}
|
|
23
|
+
export interface MultiRenderArgsDeserialized extends RenderArgsDeserializedWithFeatures {
|
|
24
|
+
sources: Source[];
|
|
25
|
+
}
|
|
26
|
+
export type { RenderArgsSerialized, RenderResults, ResultsSerialized, ResultsDeserialized, };
|
|
27
|
+
export default abstract class WiggleBaseRenderer extends FeatureRendererType {
|
|
28
|
+
supportsSVG: boolean;
|
|
29
|
+
render(renderProps: RenderArgsDeserialized): Promise<{
|
|
30
|
+
features: any;
|
|
31
|
+
containsNoTransferables: boolean;
|
|
32
|
+
height: number;
|
|
33
|
+
width: number;
|
|
34
|
+
canvasRecordedData: any;
|
|
35
|
+
reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
|
36
|
+
html?: string | undefined;
|
|
37
|
+
} | {
|
|
38
|
+
features: any;
|
|
39
|
+
containsNoTransferables: boolean;
|
|
40
|
+
height: number;
|
|
41
|
+
width: number;
|
|
42
|
+
reactElement: JSX.Element;
|
|
43
|
+
html?: string | undefined;
|
|
44
|
+
} | {
|
|
45
|
+
features: any;
|
|
46
|
+
containsNoTransferables: boolean;
|
|
47
|
+
height: number;
|
|
48
|
+
width: number;
|
|
49
|
+
imageData: any;
|
|
50
|
+
reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
|
51
|
+
html?: string | undefined;
|
|
52
|
+
}>;
|
|
53
|
+
abstract draw<T extends RenderArgsDeserializedWithFeatures>(ctx: CanvasRenderingContext2D, props: T): Promise<Record<string, unknown> | void>;
|
|
54
|
+
}
|
|
@@ -0,0 +1,36 @@
|
|
|
1
|
+
import FeatureRendererType from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
|
|
2
|
+
import { renderToAbstractCanvas } from '@jbrowse/core/util';
|
|
3
|
+
export default class WiggleBaseRenderer extends FeatureRendererType {
|
|
4
|
+
constructor() {
|
|
5
|
+
super(...arguments);
|
|
6
|
+
this.supportsSVG = true;
|
|
7
|
+
}
|
|
8
|
+
async render(renderProps) {
|
|
9
|
+
const features = await this.getFeatures(renderProps);
|
|
10
|
+
const { height, regions, bpPerPx } = renderProps;
|
|
11
|
+
const [region] = regions;
|
|
12
|
+
const width = (region.end - region.start) / bpPerPx;
|
|
13
|
+
// @ts-ignore
|
|
14
|
+
const { reducedFeatures, ...rest } = await renderToAbstractCanvas(width, height, renderProps, ctx => this.draw(ctx, {
|
|
15
|
+
...renderProps,
|
|
16
|
+
features,
|
|
17
|
+
}));
|
|
18
|
+
const results = await super.render({
|
|
19
|
+
...renderProps,
|
|
20
|
+
...rest,
|
|
21
|
+
features,
|
|
22
|
+
height,
|
|
23
|
+
width,
|
|
24
|
+
});
|
|
25
|
+
return {
|
|
26
|
+
...results,
|
|
27
|
+
...rest,
|
|
28
|
+
// @ts-ignore
|
|
29
|
+
features: reducedFeatures || results.features,
|
|
30
|
+
containsNoTransferables: true,
|
|
31
|
+
height,
|
|
32
|
+
width,
|
|
33
|
+
};
|
|
34
|
+
}
|
|
35
|
+
}
|
|
36
|
+
//# sourceMappingURL=WiggleBaseRenderer.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"WiggleBaseRenderer.js","sourceRoot":"","sources":["../src/WiggleBaseRenderer.tsx"],"names":[],"mappings":"AAAA,OAAO,mBAON,MAAM,mEAAmE,CAAA;AAC1E,OAAO,EAAE,sBAAsB,EAAW,MAAM,oBAAoB,CAAA;AAmCpE,MAAM,CAAC,OAAO,OAAgB,kBAAmB,SAAQ,mBAAmB;IAA5E;;QACE,gBAAW,GAAG,IAAI,CAAA;IA+CpB,CAAC;IA7CC,KAAK,CAAC,MAAM,CAAC,WAAmC;QAC9C,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;QACpD,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,WAAW,CAAA;QAChD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QAEnD,aAAa;QACb,MAAM,EAAE,eAAe,EAAE,GAAG,IAAI,EAAE,GAAG,MAAM,sBAAsB,CAC/D,KAAK,EACL,MAAM,EACN,WAAW,EACX,GAAG,CAAC,EAAE,CACJ,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE;YACb,GAAG,WAAW;YACd,QAAQ;SACT,CAAC,CACL,CAAA;QAED,MAAM,OAAO,GAAG,MAAM,KAAK,CAAC,MAAM,CAAC;YACjC,GAAG,WAAW;YACd,GAAG,IAAI;YACP,QAAQ;YACR,MAAM;YACN,KAAK;SACN,CAAC,CAAA;QAEF,OAAO;YACL,GAAG,OAAO;YACV,GAAG,IAAI;YACP,aAAa;YACb,QAAQ,EAAE,eAAe,IAAI,OAAO,CAAC,QAAQ;YAC7C,uBAAuB,EAAE,IAAI;YAC7B,MAAM;YACN,KAAK;SACN,CAAA;IACH,CAAC;CAUF"}
|
|
@@ -0,0 +1,47 @@
|
|
|
1
|
+
import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
|
|
2
|
+
import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
|
|
3
|
+
import { Region } from '@jbrowse/core/util';
|
|
4
|
+
import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
|
|
5
|
+
import { FeatureStats } from '@jbrowse/core/util/stats';
|
|
6
|
+
export declare class WiggleGetGlobalStats extends RpcMethodType {
|
|
7
|
+
name: string;
|
|
8
|
+
deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
|
|
9
|
+
execute(args: {
|
|
10
|
+
adapterConfig: {};
|
|
11
|
+
signal?: RemoteAbortSignal;
|
|
12
|
+
headers?: Record<string, string>;
|
|
13
|
+
sessionId: string;
|
|
14
|
+
}, rpcDriverClassName: string): Promise<FeatureStats>;
|
|
15
|
+
}
|
|
16
|
+
export declare class WiggleGetMultiRegionStats extends RpcMethodType {
|
|
17
|
+
name: string;
|
|
18
|
+
deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
|
|
19
|
+
serializeArguments(args: RenderArgs & {
|
|
20
|
+
signal?: AbortSignal;
|
|
21
|
+
statusCallback?: Function;
|
|
22
|
+
}, rpcDriverClassName: string): Promise<{}>;
|
|
23
|
+
execute(args: {
|
|
24
|
+
adapterConfig: {};
|
|
25
|
+
signal?: RemoteAbortSignal;
|
|
26
|
+
sessionId: string;
|
|
27
|
+
headers?: Record<string, string>;
|
|
28
|
+
regions: Region[];
|
|
29
|
+
bpPerPx: number;
|
|
30
|
+
}, rpcDriverClassName: string): Promise<FeatureStats>;
|
|
31
|
+
}
|
|
32
|
+
export declare class MultiWiggleGetSources extends RpcMethodType {
|
|
33
|
+
name: string;
|
|
34
|
+
deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
|
|
35
|
+
serializeArguments(args: RenderArgs & {
|
|
36
|
+
signal?: AbortSignal;
|
|
37
|
+
statusCallback?: Function;
|
|
38
|
+
}, rpcDriverClassName: string): Promise<{}>;
|
|
39
|
+
execute(args: {
|
|
40
|
+
adapterConfig: {};
|
|
41
|
+
signal?: RemoteAbortSignal;
|
|
42
|
+
sessionId: string;
|
|
43
|
+
headers?: Record<string, string>;
|
|
44
|
+
regions: Region[];
|
|
45
|
+
bpPerPx: number;
|
|
46
|
+
}, rpcDriverClassName: string): Promise<any>;
|
|
47
|
+
}
|
|
@@ -0,0 +1,112 @@
|
|
|
1
|
+
import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
|
|
2
|
+
import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
|
|
3
|
+
import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
|
|
4
|
+
import { renameRegionsIfNeeded } from '@jbrowse/core/util';
|
|
5
|
+
import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
|
|
6
|
+
export class WiggleGetGlobalStats extends RpcMethodType {
|
|
7
|
+
constructor() {
|
|
8
|
+
super(...arguments);
|
|
9
|
+
this.name = 'WiggleGetGlobalStats';
|
|
10
|
+
}
|
|
11
|
+
// eslint-disable-next-line @typescript-eslint/no-explicit-any
|
|
12
|
+
async deserializeArguments(args, rpcDriverClassName) {
|
|
13
|
+
const l = await super.deserializeArguments(args, rpcDriverClassName);
|
|
14
|
+
return {
|
|
15
|
+
...l,
|
|
16
|
+
filters: args.filters
|
|
17
|
+
? new SerializableFilterChain({
|
|
18
|
+
filters: args.filters,
|
|
19
|
+
})
|
|
20
|
+
: undefined,
|
|
21
|
+
};
|
|
22
|
+
}
|
|
23
|
+
async execute(args, rpcDriverClassName) {
|
|
24
|
+
const pm = this.pluginManager;
|
|
25
|
+
const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
|
|
26
|
+
const { adapterConfig, sessionId } = deserializedArgs;
|
|
27
|
+
const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
|
|
28
|
+
// @ts-ignore
|
|
29
|
+
return dataAdapter.getGlobalStats(deserializedArgs);
|
|
30
|
+
}
|
|
31
|
+
}
|
|
32
|
+
export class WiggleGetMultiRegionStats extends RpcMethodType {
|
|
33
|
+
constructor() {
|
|
34
|
+
super(...arguments);
|
|
35
|
+
this.name = 'WiggleGetMultiRegionStats';
|
|
36
|
+
}
|
|
37
|
+
// eslint-disable-next-line @typescript-eslint/no-explicit-any
|
|
38
|
+
async deserializeArguments(args, rpcDriverClassName) {
|
|
39
|
+
const l = await super.deserializeArguments(args, rpcDriverClassName);
|
|
40
|
+
return {
|
|
41
|
+
...l,
|
|
42
|
+
filters: args.filters
|
|
43
|
+
? new SerializableFilterChain({
|
|
44
|
+
filters: args.filters,
|
|
45
|
+
})
|
|
46
|
+
: undefined,
|
|
47
|
+
};
|
|
48
|
+
}
|
|
49
|
+
async serializeArguments(args, rpcDriverClassName) {
|
|
50
|
+
var _a, _b, _c;
|
|
51
|
+
const pm = this.pluginManager;
|
|
52
|
+
const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
|
|
53
|
+
if (!assemblyManager) {
|
|
54
|
+
return args;
|
|
55
|
+
}
|
|
56
|
+
const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
|
|
57
|
+
...args,
|
|
58
|
+
filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
|
|
59
|
+
});
|
|
60
|
+
return super.serializeArguments(renamedArgs, rpcDriverClassName);
|
|
61
|
+
}
|
|
62
|
+
async execute(args, rpcDriverClassName) {
|
|
63
|
+
const pm = this.pluginManager;
|
|
64
|
+
const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
|
|
65
|
+
const { regions, adapterConfig, sessionId } = deserializedArgs;
|
|
66
|
+
const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
|
|
67
|
+
if (dataAdapter instanceof BaseFeatureDataAdapter) {
|
|
68
|
+
return dataAdapter.getMultiRegionStats(regions, deserializedArgs);
|
|
69
|
+
}
|
|
70
|
+
throw new Error('Data adapter not found');
|
|
71
|
+
}
|
|
72
|
+
}
|
|
73
|
+
export class MultiWiggleGetSources extends RpcMethodType {
|
|
74
|
+
constructor() {
|
|
75
|
+
super(...arguments);
|
|
76
|
+
this.name = 'MultiWiggleGetSources';
|
|
77
|
+
}
|
|
78
|
+
// eslint-disable-next-line @typescript-eslint/no-explicit-any
|
|
79
|
+
async deserializeArguments(args, rpcDriverClassName) {
|
|
80
|
+
const l = await super.deserializeArguments(args, rpcDriverClassName);
|
|
81
|
+
return {
|
|
82
|
+
...l,
|
|
83
|
+
filters: args.filters
|
|
84
|
+
? new SerializableFilterChain({
|
|
85
|
+
filters: args.filters,
|
|
86
|
+
})
|
|
87
|
+
: undefined,
|
|
88
|
+
};
|
|
89
|
+
}
|
|
90
|
+
async serializeArguments(args, rpcDriverClassName) {
|
|
91
|
+
var _a, _b, _c;
|
|
92
|
+
const pm = this.pluginManager;
|
|
93
|
+
const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
|
|
94
|
+
if (!assemblyManager) {
|
|
95
|
+
return args;
|
|
96
|
+
}
|
|
97
|
+
const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
|
|
98
|
+
...args,
|
|
99
|
+
filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
|
|
100
|
+
});
|
|
101
|
+
return super.serializeArguments(renamedArgs, rpcDriverClassName);
|
|
102
|
+
}
|
|
103
|
+
async execute(args, rpcDriverClassName) {
|
|
104
|
+
const pm = this.pluginManager;
|
|
105
|
+
const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
|
|
106
|
+
const { regions, adapterConfig, sessionId } = deserializedArgs;
|
|
107
|
+
const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
|
|
108
|
+
// @ts-ignore
|
|
109
|
+
return dataAdapter.getSources(regions, deserializedArgs);
|
|
110
|
+
}
|
|
111
|
+
}
|
|
112
|
+
//# sourceMappingURL=rpcMethods.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"rpcMethods.js","sourceRoot":"","sources":["../../src/WiggleRPC/rpcMethods.ts"],"names":[],"mappings":"AAAA,OAAO,aAAa,MAAM,mDAAmD,CAAA;AAC7E,OAAO,uBAAuB,MAAM,4EAA4E,CAAA;AAChH,OAAO,EAAE,UAAU,EAAE,MAAM,8CAA8C,CAAA;AAEzE,OAAO,EAAE,qBAAqB,EAAU,MAAM,oBAAoB,CAAA;AAElE,OAAO,EAAE,sBAAsB,EAAE,MAAM,yCAAyC,CAAA;AAGhF,MAAM,OAAO,oBAAqB,SAAQ,aAAa;IAAvD;;QACE,SAAI,GAAG,sBAAsB,CAAA;IAmC/B,CAAC;IAjCC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAKC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QACrD,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,aAAa;QACb,OAAO,WAAW,CAAC,cAAc,CAAC,gBAAgB,CAAC,CAAA;IACrD,CAAC;CACF;AAED,MAAM,OAAO,yBAA0B,SAAQ,aAAa;IAA5D;;QACE,SAAI,GAAG,2BAA2B,CAAA;IAyDpC,CAAC;IAvDC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,IAAsE,EACtE,kBAA0B;;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,eAAe,GAAG,MAAA,MAAA,EAAE,CAAC,SAAS,0CAAE,OAAO,0CAAE,eAAe,CAAA;QAC9D,IAAI,CAAC,eAAe,EAAE;YACpB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,WAAW,GAAG,MAAM,qBAAqB,CAAC,eAAe,EAAE;YAC/D,GAAG,IAAI;YACP,OAAO,EAAE,MAAA,IAAI,CAAC,OAAO,0CAAE,MAAM,GAAG,OAAO;SACxC,CAAC,CAAA;QAEF,OAAO,KAAK,CAAC,kBAAkB,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAA;IAClE,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAOC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,IAAI,WAAW,YAAY,sBAAsB,EAAE;YACjD,OAAO,WAAW,CAAC,mBAAmB,CAAC,OAAO,EAAE,gBAAgB,CAAC,CAAA;SAClE;QACD,MAAM,IAAI,KAAK,CAAC,wBAAwB,CAAC,CAAA;IAC3C,CAAC;CACF;AAED,MAAM,OAAO,qBAAsB,SAAQ,aAAa;IAAxD;;QACE,SAAI,GAAG,uBAAuB,CAAA;IAuDhC,CAAC;IArDC,8DAA8D;IAC9D,KAAK,CAAC,oBAAoB,CAAC,IAAS,EAAE,kBAA0B;QAC9D,MAAM,CAAC,GAAG,MAAM,KAAK,CAAC,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,CAAC,CAAA;QACpE,OAAO;YACL,GAAG,CAAC;YACJ,OAAO,EAAE,IAAI,CAAC,OAAO;gBACnB,CAAC,CAAC,IAAI,uBAAuB,CAAC;oBAC1B,OAAO,EAAE,IAAI,CAAC,OAAO;iBACtB,CAAC;gBACJ,CAAC,CAAC,SAAS;SACd,CAAA;IACH,CAAC;IAED,KAAK,CAAC,kBAAkB,CACtB,IAAsE,EACtE,kBAA0B;;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,eAAe,GAAG,MAAA,MAAA,EAAE,CAAC,SAAS,0CAAE,OAAO,0CAAE,eAAe,CAAA;QAC9D,IAAI,CAAC,eAAe,EAAE;YACpB,OAAO,IAAI,CAAA;SACZ;QAED,MAAM,WAAW,GAAG,MAAM,qBAAqB,CAAC,eAAe,EAAE;YAC/D,GAAG,IAAI;YACP,OAAO,EAAE,MAAA,IAAI,CAAC,OAAO,0CAAE,MAAM,GAAG,OAAO;SACxC,CAAC,CAAA;QAEF,OAAO,KAAK,CAAC,kBAAkB,CAAC,WAAW,EAAE,kBAAkB,CAAC,CAAA;IAClE,CAAC;IAED,KAAK,CAAC,OAAO,CACX,IAOC,EACD,kBAA0B;QAE1B,MAAM,EAAE,GAAG,IAAI,CAAC,aAAa,CAAA;QAC7B,MAAM,gBAAgB,GAAG,MAAM,IAAI,CAAC,oBAAoB,CACtD,IAAI,EACJ,kBAAkB,CACnB,CAAA;QACD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,GAAG,gBAAgB,CAAA;QAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,MAAM,UAAU,CAAC,EAAE,EAAE,SAAS,EAAE,aAAa,CAAC,CAAA;QAEtE,aAAa;QACb,OAAO,WAAW,CAAC,UAAU,CAAC,OAAO,EAAE,gBAAgB,CAAC,CAAA;IAC1D,CAAC;CACF"}
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
/// <reference types="react" />
|
|
2
|
+
import { Region } from '@jbrowse/core/util/types';
|
|
3
|
+
import { Feature } from '@jbrowse/core/util';
|
|
4
|
+
declare function WiggleRendering(props: {
|
|
5
|
+
regions: Region[];
|
|
6
|
+
features: Map<string, Feature>;
|
|
7
|
+
bpPerPx: number;
|
|
8
|
+
width: number;
|
|
9
|
+
height: number;
|
|
10
|
+
onMouseLeave: Function;
|
|
11
|
+
onMouseMove: Function;
|
|
12
|
+
onFeatureClick: Function;
|
|
13
|
+
blockKey: string;
|
|
14
|
+
}): JSX.Element;
|
|
15
|
+
declare const _default: typeof WiggleRendering;
|
|
16
|
+
export default _default;
|
|
@@ -0,0 +1,36 @@
|
|
|
1
|
+
import { observer } from 'mobx-react';
|
|
2
|
+
import React, { useRef } from 'react';
|
|
3
|
+
import { PrerenderedCanvas } from '@jbrowse/core/ui';
|
|
4
|
+
function WiggleRendering(props) {
|
|
5
|
+
const { regions, features, bpPerPx, width, height, onMouseLeave = () => { }, onMouseMove = () => { }, onFeatureClick = () => { }, } = props;
|
|
6
|
+
const [region] = regions;
|
|
7
|
+
const ref = useRef(null);
|
|
8
|
+
function getFeatureUnderMouse(eventClientX) {
|
|
9
|
+
// calculates feature under mouse
|
|
10
|
+
let offset = 0;
|
|
11
|
+
if (ref.current) {
|
|
12
|
+
offset = ref.current.getBoundingClientRect().left;
|
|
13
|
+
}
|
|
14
|
+
const offsetX = eventClientX - offset;
|
|
15
|
+
const px = region.reversed ? width - offsetX : offsetX;
|
|
16
|
+
const clientBp = region.start + bpPerPx * px;
|
|
17
|
+
let featureUnderMouse;
|
|
18
|
+
for (const feature of features.values()) {
|
|
19
|
+
// bpPerPx added to the end to accomodate "reduced features" (one feature per px)
|
|
20
|
+
if (clientBp <= feature.get('end') + bpPerPx &&
|
|
21
|
+
clientBp >= feature.get('start')) {
|
|
22
|
+
featureUnderMouse = feature;
|
|
23
|
+
break;
|
|
24
|
+
}
|
|
25
|
+
}
|
|
26
|
+
return featureUnderMouse;
|
|
27
|
+
}
|
|
28
|
+
return (React.createElement("div", { ref: ref, "data-testid": "wiggle-rendering-test", onMouseMove: event => { var _a; return onMouseMove(event, (_a = getFeatureUnderMouse(event.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onClick: event => { var _a; return onFeatureClick(event, (_a = getFeatureUnderMouse(event.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onMouseLeave: event => onMouseLeave(event), style: {
|
|
29
|
+
overflow: 'visible',
|
|
30
|
+
position: 'relative',
|
|
31
|
+
height,
|
|
32
|
+
} },
|
|
33
|
+
React.createElement(PrerenderedCanvas, { ...props })));
|
|
34
|
+
}
|
|
35
|
+
export default observer(WiggleRendering);
|
|
36
|
+
//# sourceMappingURL=WiggleRendering.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"WiggleRendering.js","sourceRoot":"","sources":["../src/WiggleRendering.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAIrC,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAA;AAEpD,SAAS,eAAe,CAAC,KAUxB;IACC,MAAM,EACJ,OAAO,EACP,QAAQ,EACR,OAAO,EACP,KAAK,EACL,MAAM,EACN,YAAY,GAAG,GAAG,EAAE,GAAE,CAAC,EACvB,WAAW,GAAG,GAAG,EAAE,GAAE,CAAC,EACtB,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,GAC1B,GAAG,KAAK,CAAA;IACT,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;IACxB,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IAExC,SAAS,oBAAoB,CAAC,YAAoB;QAChD,iCAAiC;QACjC,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,IAAI,GAAG,CAAC,OAAO,EAAE;YACf,MAAM,GAAG,GAAG,CAAC,OAAO,CAAC,qBAAqB,EAAE,CAAC,IAAI,CAAA;SAClD;QACD,MAAM,OAAO,GAAG,YAAY,GAAG,MAAM,CAAA;QACrC,MAAM,EAAE,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,GAAG,OAAO,CAAC,CAAC,CAAC,OAAO,CAAA;QACtD,MAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,GAAG,OAAO,GAAG,EAAE,CAAA;QAC5C,IAAI,iBAAiB,CAAA;QACrB,KAAK,MAAM,OAAO,IAAI,QAAQ,CAAC,MAAM,EAAE,EAAE;YACvC,iFAAiF;YACjF,IACE,QAAQ,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,OAAO;gBACxC,QAAQ,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,EAChC;gBACA,iBAAiB,GAAG,OAAO,CAAA;gBAC3B,MAAK;aACN;SACF;QACD,OAAO,iBAAiB,CAAA;IAC1B,CAAC;IACD,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,iBACI,uBAAuB,EACnC,WAAW,EAAE,KAAK,CAAC,EAAE,WACnB,OAAA,WAAW,CAAC,KAAK,EAAE,MAAA,oBAAoB,CAAC,KAAK,CAAC,OAAO,CAAC,0CAAE,EAAE,EAAE,CAAC,CAAA,EAAA,EAE/D,OAAO,EAAE,KAAK,CAAC,EAAE,WACf,OAAA,cAAc,CAAC,KAAK,EAAE,MAAA,oBAAoB,CAAC,KAAK,CAAC,OAAO,CAAC,0CAAE,EAAE,EAAE,CAAC,CAAA,EAAA,EAElE,YAAY,EAAE,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,KAAK,CAAC,EAC1C,KAAK,EAAE;YACL,QAAQ,EAAE,SAAS;YACnB,QAAQ,EAAE,UAAU;YACpB,MAAM;SACP;QAED,oBAAC,iBAAiB,OAAK,KAAK,GAAI,CAC5B,CACP,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,eAAe,CAAC,CAAA"}
|
|
@@ -0,0 +1,7 @@
|
|
|
1
|
+
import { Feature } from '@jbrowse/core/util';
|
|
2
|
+
import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
|
|
3
|
+
export default class XYPlotRenderer extends WiggleBaseRenderer {
|
|
4
|
+
draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
|
|
5
|
+
reducedFeatures: Feature[];
|
|
6
|
+
}>;
|
|
7
|
+
}
|
|
@@ -0,0 +1,26 @@
|
|
|
1
|
+
import { readConfObject } from '@jbrowse/core/configuration';
|
|
2
|
+
import { drawXY } from '../drawxy';
|
|
3
|
+
import WiggleBaseRenderer from '../WiggleBaseRenderer';
|
|
4
|
+
import { YSCALEBAR_LABEL_OFFSET } from '../util';
|
|
5
|
+
export default class XYPlotRenderer extends WiggleBaseRenderer {
|
|
6
|
+
async draw(ctx, props) {
|
|
7
|
+
const { features, config } = props;
|
|
8
|
+
// the adjusted height takes into account YSCALEBAR_LABEL_OFFSET from the
|
|
9
|
+
// wiggle display, and makes the height of the actual drawn area add
|
|
10
|
+
// "padding" to the top and bottom of the display
|
|
11
|
+
const pivotValue = readConfObject(config, 'bicolorPivotValue');
|
|
12
|
+
const negColor = readConfObject(config, 'negColor');
|
|
13
|
+
const posColor = readConfObject(config, 'posColor');
|
|
14
|
+
const Color = await import('color').then(f => f.default);
|
|
15
|
+
return drawXY(ctx, {
|
|
16
|
+
...props,
|
|
17
|
+
colorCallback: readConfObject(config, 'color') === '#f0f'
|
|
18
|
+
? (_, score) => score < pivotValue ? negColor : posColor
|
|
19
|
+
: (feature, _score) => readConfObject(config, 'color', { feature }),
|
|
20
|
+
offset: YSCALEBAR_LABEL_OFFSET,
|
|
21
|
+
features: [...features.values()],
|
|
22
|
+
Color,
|
|
23
|
+
});
|
|
24
|
+
}
|
|
25
|
+
}
|
|
26
|
+
//# sourceMappingURL=XYPlotRenderer.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"XYPlotRenderer.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/XYPlotRenderer.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAE5D,OAAO,EAAE,MAAM,EAAE,MAAM,WAAW,CAAA;AAClC,OAAO,kBAEN,MAAM,uBAAuB,CAAA;AAC9B,OAAO,EAAE,sBAAsB,EAAE,MAAM,SAAS,CAAA;AAEhD,MAAM,CAAC,OAAO,OAAO,cAAe,SAAQ,kBAAkB;IAC5D,KAAK,CAAC,IAAI,CACR,GAA6B,EAC7B,KAAyC;QAEzC,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,GAAG,KAAK,CAAA;QAElC,yEAAyE;QACzE,oEAAoE;QACpE,iDAAiD;QACjD,MAAM,UAAU,GAAG,cAAc,CAAC,MAAM,EAAE,mBAAmB,CAAC,CAAA;QAC9D,MAAM,QAAQ,GAAG,cAAc,CAAC,MAAM,EAAE,UAAU,CAAC,CAAA;QACnD,MAAM,QAAQ,GAAG,cAAc,CAAC,MAAM,EAAE,UAAU,CAAC,CAAA;QACnD,MAAM,KAAK,GAAG,MAAM,MAAM,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAA;QAExD,OAAO,MAAM,CAAC,GAAG,EAAE;YACjB,GAAG,KAAK;YACR,aAAa,EACX,cAAc,CAAC,MAAM,EAAE,OAAO,CAAC,KAAK,MAAM;gBACxC,CAAC,CAAC,CAAC,CAAU,EAAE,KAAa,EAAE,EAAE,CAC5B,KAAK,GAAG,UAAU,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,QAAQ;gBAC5C,CAAC,CAAC,CAAC,OAAgB,EAAE,MAAc,EAAE,EAAE,CACnC,cAAc,CAAC,MAAM,EAAE,OAAO,EAAE,EAAE,OAAO,EAAE,CAAC;YACpD,MAAM,EAAE,sBAAsB;YAC9B,QAAQ,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC;YAChC,KAAK;SACN,CAAC,CAAA;IACJ,CAAC;CACF"}
|
|
@@ -0,0 +1,26 @@
|
|
|
1
|
+
import { ConfigurationSchema } from '@jbrowse/core/configuration';
|
|
2
|
+
import ConfigSchema from '../configSchema';
|
|
3
|
+
import { types } from 'mobx-state-tree';
|
|
4
|
+
const configSchema = ConfigurationSchema('XYPlotRenderer', {
|
|
5
|
+
filled: {
|
|
6
|
+
type: 'boolean',
|
|
7
|
+
defaultValue: true,
|
|
8
|
+
},
|
|
9
|
+
displayCrossHatches: {
|
|
10
|
+
type: 'boolean',
|
|
11
|
+
description: 'choose to draw cross hatches (sideways lines)',
|
|
12
|
+
defaultValue: false,
|
|
13
|
+
},
|
|
14
|
+
summaryScoreMode: {
|
|
15
|
+
type: 'stringEnum',
|
|
16
|
+
model: types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
|
|
17
|
+
description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
|
|
18
|
+
defaultValue: 'whiskers',
|
|
19
|
+
},
|
|
20
|
+
minSize: {
|
|
21
|
+
type: 'number',
|
|
22
|
+
defaultValue: 0,
|
|
23
|
+
},
|
|
24
|
+
}, { baseConfiguration: ConfigSchema, explicitlyTyped: true });
|
|
25
|
+
export default configSchema;
|
|
26
|
+
//# sourceMappingURL=configSchema.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,YAAY,MAAM,iBAAiB,CAAA;AAC1C,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAEvC,MAAM,YAAY,GAAG,mBAAmB,CACtC,gBAAgB,EAChB;IACE,MAAM,EAAE;QACN,IAAI,EAAE,SAAS;QACf,YAAY,EAAE,IAAI;KACnB;IACD,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;IACD,gBAAgB,EAAE;QAChB,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,KAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;QACzE,WAAW,EACT,oGAAoG;QACtG,YAAY,EAAE,UAAU;KACzB;IACD,OAAO,EAAE;QACP,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;KAChB;CACF,EACD,EAAE,iBAAiB,EAAE,YAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,eAAe,YAAY,CAAA"}
|
|
@@ -0,0 +1,7 @@
|
|
|
1
|
+
import ReactComponent from '../WiggleRendering';
|
|
2
|
+
import PluginManager from '@jbrowse/core/PluginManager';
|
|
3
|
+
import XYPlotRenderer from './XYPlotRenderer';
|
|
4
|
+
import configSchema from './configSchema';
|
|
5
|
+
export { XYPlotRenderer, configSchema, ReactComponent };
|
|
6
|
+
declare const _default: (pluginManager: PluginManager) => void;
|
|
7
|
+
export default _default;
|
|
@@ -0,0 +1,13 @@
|
|
|
1
|
+
import ReactComponent from '../WiggleRendering';
|
|
2
|
+
import XYPlotRenderer from './XYPlotRenderer';
|
|
3
|
+
import configSchema from './configSchema';
|
|
4
|
+
export { XYPlotRenderer, configSchema, ReactComponent };
|
|
5
|
+
export default (pluginManager) => {
|
|
6
|
+
pluginManager.addRendererType(() => new XYPlotRenderer({
|
|
7
|
+
name: 'XYPlotRenderer',
|
|
8
|
+
ReactComponent,
|
|
9
|
+
configSchema,
|
|
10
|
+
pluginManager,
|
|
11
|
+
}));
|
|
12
|
+
};
|
|
13
|
+
//# sourceMappingURL=index.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/index.ts"],"names":[],"mappings":"AAAA,OAAO,cAAc,MAAM,oBAAoB,CAAA;AAE/C,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,EAAE,cAAc,EAAE,YAAY,EAAE,cAAc,EAAE,CAAA;AAEvD,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,eAAe,CAC3B,GAAG,EAAE,CACH,IAAI,cAAc,CAAC;QACjB,IAAI,EAAE,gBAAgB;QACtB,cAAc;QACd,YAAY;QACZ,aAAa;KACd,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
|