@jbrowse/plugin-wiggle 1.7.11 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (446) hide show
  1. package/dist/BigWigAdapter/BigWigAdapter.d.ts +8 -7
  2. package/dist/BigWigAdapter/BigWigAdapter.js +205 -283
  3. package/dist/BigWigAdapter/BigWigAdapter.js.map +1 -0
  4. package/dist/BigWigAdapter/configSchema.js +17 -21
  5. package/dist/BigWigAdapter/configSchema.js.map +1 -0
  6. package/dist/BigWigAdapter/index.d.ts +3 -1
  7. package/dist/BigWigAdapter/index.js +42 -12
  8. package/dist/BigWigAdapter/index.js.map +1 -0
  9. package/dist/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
  10. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js +68 -0
  11. package/dist/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
  12. package/dist/CreateMultiWiggleExtension/index.d.ts +2 -0
  13. package/dist/CreateMultiWiggleExtension/index.js +111 -0
  14. package/dist/CreateMultiWiggleExtension/index.js.map +1 -0
  15. package/dist/DensityRenderer/DensityRenderer.d.ts +6 -0
  16. package/dist/DensityRenderer/DensityRenderer.js +74 -0
  17. package/dist/DensityRenderer/DensityRenderer.js.map +1 -0
  18. package/dist/DensityRenderer/configSchema.d.ts +2 -0
  19. package/dist/DensityRenderer/configSchema.js +10 -0
  20. package/dist/DensityRenderer/configSchema.js.map +1 -0
  21. package/dist/DensityRenderer/index.d.ts +3 -6
  22. package/dist/DensityRenderer/index.js +17 -135
  23. package/dist/DensityRenderer/index.js.map +1 -0
  24. package/dist/LinePlotRenderer/LinePlotRenderer.d.ts +4 -2
  25. package/dist/LinePlotRenderer/LinePlotRenderer.js +83 -168
  26. package/dist/LinePlotRenderer/LinePlotRenderer.js.map +1 -0
  27. package/dist/LinePlotRenderer/configSchema.d.ts +2 -2
  28. package/dist/LinePlotRenderer/configSchema.js +15 -69
  29. package/dist/LinePlotRenderer/configSchema.js.map +1 -0
  30. package/dist/LinePlotRenderer/index.d.ts +3 -3
  31. package/dist/LinePlotRenderer/index.js +17 -32
  32. package/dist/LinePlotRenderer/index.js.map +1 -0
  33. package/dist/LinearWiggleDisplay/components/SetColorDialog.d.ts +6 -2
  34. package/dist/LinearWiggleDisplay/components/SetColorDialog.js +88 -106
  35. package/dist/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  36. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js +86 -107
  37. package/dist/LinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  38. package/dist/LinearWiggleDisplay/components/Tooltip.d.ts +6 -11
  39. package/dist/LinearWiggleDisplay/components/Tooltip.js +47 -163
  40. package/dist/LinearWiggleDisplay/components/Tooltip.js.map +1 -0
  41. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js +44 -50
  42. package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  43. package/dist/LinearWiggleDisplay/components/YScaleBar.js +24 -31
  44. package/dist/LinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  45. package/dist/LinearWiggleDisplay/index.d.ts +7 -3
  46. package/dist/LinearWiggleDisplay/index.js +27 -41
  47. package/dist/LinearWiggleDisplay/index.js.map +1 -0
  48. package/dist/LinearWiggleDisplay/models/configSchema.js +65 -69
  49. package/dist/LinearWiggleDisplay/models/configSchema.js.map +1 -0
  50. package/dist/LinearWiggleDisplay/models/model.d.ts +39 -18
  51. package/dist/LinearWiggleDisplay/models/model.js +538 -696
  52. package/dist/LinearWiggleDisplay/models/model.js.map +1 -0
  53. package/dist/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
  54. package/dist/MultiDensityRenderer/MultiDensityRenderer.js +135 -0
  55. package/dist/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
  56. package/dist/MultiDensityRenderer/configSchema.d.ts +2 -0
  57. package/dist/MultiDensityRenderer/configSchema.js +10 -0
  58. package/dist/MultiDensityRenderer/configSchema.js.map +1 -0
  59. package/dist/MultiDensityRenderer/index.d.ts +3 -0
  60. package/dist/MultiDensityRenderer/index.js +19 -0
  61. package/dist/MultiDensityRenderer/index.js.map +1 -0
  62. package/dist/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
  63. package/dist/MultiLineRenderer/MultiLineRenderer.js +124 -0
  64. package/dist/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
  65. package/dist/MultiLineRenderer/configSchema.d.ts +2 -0
  66. package/dist/MultiLineRenderer/configSchema.js +23 -0
  67. package/dist/MultiLineRenderer/configSchema.js.map +1 -0
  68. package/dist/MultiLineRenderer/index.d.ts +3 -0
  69. package/dist/MultiLineRenderer/index.js +19 -0
  70. package/dist/MultiLineRenderer/index.js.map +1 -0
  71. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
  72. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +239 -0
  73. package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  74. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
  75. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +91 -0
  76. package/dist/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  77. package/dist/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
  78. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js +78 -0
  79. package/dist/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
  80. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
  81. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +144 -0
  82. package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  83. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
  84. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js +26 -0
  85. package/dist/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  86. package/dist/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
  87. package/dist/MultiLinearWiggleDisplay/components/util.js +38 -0
  88. package/dist/MultiLinearWiggleDisplay/components/util.js.map +1 -0
  89. package/dist/MultiLinearWiggleDisplay/index.d.ts +3 -0
  90. package/dist/MultiLinearWiggleDisplay/index.js +23 -0
  91. package/dist/MultiLinearWiggleDisplay/index.js.map +1 -0
  92. package/dist/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
  93. package/dist/MultiLinearWiggleDisplay/models/configSchema.js +77 -0
  94. package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
  95. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
  96. package/dist/MultiLinearWiggleDisplay/models/model.js +675 -0
  97. package/dist/MultiLinearWiggleDisplay/models/model.js.map +1 -0
  98. package/dist/MultiQuantitativeTrack/index.d.ts +3 -0
  99. package/dist/MultiQuantitativeTrack/index.js +19 -0
  100. package/dist/MultiQuantitativeTrack/index.js.map +1 -0
  101. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
  102. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js +131 -0
  103. package/dist/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
  104. package/dist/MultiRowLineRenderer/configSchema.d.ts +2 -0
  105. package/dist/MultiRowLineRenderer/configSchema.js +23 -0
  106. package/dist/MultiRowLineRenderer/configSchema.js.map +1 -0
  107. package/dist/MultiRowLineRenderer/index.d.ts +3 -0
  108. package/dist/MultiRowLineRenderer/index.js +19 -0
  109. package/dist/MultiRowLineRenderer/index.js.map +1 -0
  110. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
  111. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +164 -0
  112. package/dist/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
  113. package/dist/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
  114. package/dist/MultiRowXYPlotRenderer/configSchema.js +31 -0
  115. package/dist/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
  116. package/dist/MultiRowXYPlotRenderer/index.d.ts +3 -0
  117. package/dist/MultiRowXYPlotRenderer/index.js +19 -0
  118. package/dist/MultiRowXYPlotRenderer/index.js.map +1 -0
  119. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +28 -0
  120. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js +244 -0
  121. package/dist/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
  122. package/dist/MultiWiggleAdapter/configSchema.d.ts +2 -0
  123. package/dist/MultiWiggleAdapter/configSchema.js +14 -0
  124. package/dist/MultiWiggleAdapter/configSchema.js.map +1 -0
  125. package/dist/MultiWiggleAdapter/index.d.ts +3 -0
  126. package/dist/MultiWiggleAdapter/index.js +47 -0
  127. package/dist/MultiWiggleAdapter/index.js.map +1 -0
  128. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
  129. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +139 -0
  130. package/dist/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
  131. package/dist/MultiWiggleAddTrackWidget/index.d.ts +3 -0
  132. package/dist/MultiWiggleAddTrackWidget/index.js +19 -0
  133. package/dist/MultiWiggleAddTrackWidget/index.js.map +1 -0
  134. package/dist/MultiWiggleRendering.d.ts +21 -0
  135. package/dist/MultiWiggleRendering.js +164 -0
  136. package/dist/MultiWiggleRendering.js.map +1 -0
  137. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
  138. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js +153 -0
  139. package/dist/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
  140. package/dist/MultiXYPlotRenderer/configSchema.d.ts +2 -0
  141. package/dist/MultiXYPlotRenderer/configSchema.js +31 -0
  142. package/dist/MultiXYPlotRenderer/configSchema.js.map +1 -0
  143. package/dist/MultiXYPlotRenderer/index.d.ts +3 -0
  144. package/dist/MultiXYPlotRenderer/index.js +19 -0
  145. package/dist/MultiXYPlotRenderer/index.js.map +1 -0
  146. package/dist/QuantitativeTrack/index.d.ts +3 -0
  147. package/dist/QuantitativeTrack/index.js +19 -0
  148. package/dist/QuantitativeTrack/index.js.map +1 -0
  149. package/dist/Tooltip.d.ts +20 -0
  150. package/dist/Tooltip.js +124 -0
  151. package/dist/Tooltip.js.map +1 -0
  152. package/dist/WiggleBaseRenderer.d.ts +11 -12
  153. package/dist/WiggleBaseRenderer.js +132 -129
  154. package/dist/WiggleBaseRenderer.js.map +1 -0
  155. package/dist/WiggleRPC/rpcMethods.d.ts +17 -1
  156. package/dist/WiggleRPC/rpcMethods.js +258 -289
  157. package/dist/WiggleRPC/rpcMethods.js.map +1 -0
  158. package/dist/WiggleRendering.d.ts +1 -1
  159. package/dist/WiggleRendering.js +103 -102
  160. package/dist/WiggleRendering.js.map +1 -0
  161. package/dist/XYPlotRenderer/XYPlotRenderer.d.ts +4 -1
  162. package/dist/XYPlotRenderer/XYPlotRenderer.js +147 -194
  163. package/dist/XYPlotRenderer/XYPlotRenderer.js.map +1 -0
  164. package/dist/XYPlotRenderer/configSchema.d.ts +2 -0
  165. package/dist/XYPlotRenderer/configSchema.js +31 -0
  166. package/dist/XYPlotRenderer/configSchema.js.map +1 -0
  167. package/dist/XYPlotRenderer/index.d.ts +7 -3
  168. package/dist/XYPlotRenderer/index.js +21 -32
  169. package/dist/XYPlotRenderer/index.js.map +1 -0
  170. package/dist/configSchema.js +42 -74
  171. package/dist/configSchema.js.map +1 -0
  172. package/dist/drawxy.d.ts +50 -0
  173. package/dist/drawxy.js +411 -0
  174. package/dist/drawxy.js.map +1 -0
  175. package/dist/index.d.ts +194 -85
  176. package/dist/index.js +139 -247
  177. package/dist/index.js.map +1 -0
  178. package/dist/util.d.ts +34 -1
  179. package/dist/util.js +270 -143
  180. package/dist/util.js.map +1 -0
  181. package/esm/BigWigAdapter/BigWigAdapter.d.ts +25 -0
  182. package/esm/BigWigAdapter/BigWigAdapter.js +81 -0
  183. package/esm/BigWigAdapter/BigWigAdapter.js.map +1 -0
  184. package/esm/BigWigAdapter/configSchema.d.ts +2 -0
  185. package/esm/BigWigAdapter/configSchema.js +16 -0
  186. package/esm/BigWigAdapter/configSchema.js.map +1 -0
  187. package/esm/BigWigAdapter/index.d.ts +3 -0
  188. package/esm/BigWigAdapter/index.js +15 -0
  189. package/esm/BigWigAdapter/index.js.map +1 -0
  190. package/esm/CreateMultiWiggleExtension/ConfirmDialog.d.ts +9 -0
  191. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js +26 -0
  192. package/esm/CreateMultiWiggleExtension/ConfirmDialog.js.map +1 -0
  193. package/esm/CreateMultiWiggleExtension/index.d.ts +2 -0
  194. package/esm/CreateMultiWiggleExtension/index.js +51 -0
  195. package/esm/CreateMultiWiggleExtension/index.js.map +1 -0
  196. package/esm/DensityRenderer/DensityRenderer.d.ts +6 -0
  197. package/esm/DensityRenderer/DensityRenderer.js +8 -0
  198. package/esm/DensityRenderer/DensityRenderer.js.map +1 -0
  199. package/esm/DensityRenderer/configSchema.d.ts +2 -0
  200. package/esm/DensityRenderer/configSchema.js +5 -0
  201. package/esm/DensityRenderer/configSchema.js.map +1 -0
  202. package/esm/DensityRenderer/index.d.ts +3 -0
  203. package/esm/DensityRenderer/index.js +12 -0
  204. package/esm/DensityRenderer/index.js.map +1 -0
  205. package/esm/LinePlotRenderer/LinePlotRenderer.d.ts +6 -0
  206. package/esm/LinePlotRenderer/LinePlotRenderer.js +13 -0
  207. package/esm/LinePlotRenderer/LinePlotRenderer.js.map +1 -0
  208. package/esm/LinePlotRenderer/configSchema.d.ts +2 -0
  209. package/esm/LinePlotRenderer/configSchema.js +11 -0
  210. package/esm/LinePlotRenderer/configSchema.js.map +1 -0
  211. package/esm/LinePlotRenderer/index.d.ts +3 -0
  212. package/esm/LinePlotRenderer/index.js +12 -0
  213. package/esm/LinePlotRenderer/index.js.map +1 -0
  214. package/esm/LinearWiggleDisplay/components/SetColorDialog.d.ts +14 -0
  215. package/esm/LinearWiggleDisplay/components/SetColorDialog.js +48 -0
  216. package/esm/LinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  217. package/esm/LinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
  218. package/esm/LinearWiggleDisplay/components/SetMinMaxDialog.js +46 -0
  219. package/esm/LinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  220. package/esm/LinearWiggleDisplay/components/Tooltip.d.ts +19 -0
  221. package/esm/LinearWiggleDisplay/components/Tooltip.js +34 -0
  222. package/esm/LinearWiggleDisplay/components/Tooltip.js.map +1 -0
  223. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +8 -0
  224. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js +29 -0
  225. package/esm/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  226. package/esm/LinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
  227. package/esm/LinearWiggleDisplay/components/YScaleBar.js +9 -0
  228. package/esm/LinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  229. package/esm/LinearWiggleDisplay/index.d.ts +7 -0
  230. package/esm/LinearWiggleDisplay/index.js +21 -0
  231. package/esm/LinearWiggleDisplay/index.js.map +1 -0
  232. package/esm/LinearWiggleDisplay/models/configSchema.d.ts +2 -0
  233. package/esm/LinearWiggleDisplay/models/configSchema.js +64 -0
  234. package/esm/LinearWiggleDisplay/models/configSchema.js.map +1 -0
  235. package/esm/LinearWiggleDisplay/models/model.d.ts +309 -0
  236. package/esm/LinearWiggleDisplay/models/model.js +449 -0
  237. package/esm/LinearWiggleDisplay/models/model.js.map +1 -0
  238. package/esm/MultiDensityRenderer/MultiDensityRenderer.d.ts +7 -0
  239. package/esm/MultiDensityRenderer/MultiDensityRenderer.js +36 -0
  240. package/esm/MultiDensityRenderer/MultiDensityRenderer.js.map +1 -0
  241. package/esm/MultiDensityRenderer/configSchema.d.ts +2 -0
  242. package/esm/MultiDensityRenderer/configSchema.js +5 -0
  243. package/esm/MultiDensityRenderer/configSchema.js.map +1 -0
  244. package/esm/MultiDensityRenderer/index.d.ts +3 -0
  245. package/esm/MultiDensityRenderer/index.js +12 -0
  246. package/esm/MultiDensityRenderer/index.js.map +1 -0
  247. package/esm/MultiLineRenderer/MultiLineRenderer.d.ts +7 -0
  248. package/esm/MultiLineRenderer/MultiLineRenderer.js +25 -0
  249. package/esm/MultiLineRenderer/MultiLineRenderer.js.map +1 -0
  250. package/esm/MultiLineRenderer/configSchema.d.ts +2 -0
  251. package/esm/MultiLineRenderer/configSchema.js +18 -0
  252. package/esm/MultiLineRenderer/configSchema.js.map +1 -0
  253. package/esm/MultiLineRenderer/index.d.ts +3 -0
  254. package/esm/MultiLineRenderer/index.js +12 -0
  255. package/esm/MultiLineRenderer/index.js.map +1 -0
  256. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.d.ts +10 -0
  257. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +162 -0
  258. package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js.map +1 -0
  259. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.d.ts +11 -0
  260. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js +46 -0
  261. package/esm/MultiLinearWiggleDisplay/components/SetMinMaxDialog.js.map +1 -0
  262. package/esm/MultiLinearWiggleDisplay/components/Tooltip.d.ts +25 -0
  263. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js +43 -0
  264. package/esm/MultiLinearWiggleDisplay/components/Tooltip.js.map +1 -0
  265. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts +13 -0
  266. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js +99 -0
  267. package/esm/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map +1 -0
  268. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.d.ts +7 -0
  269. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js +9 -0
  270. package/esm/MultiLinearWiggleDisplay/components/YScaleBar.js.map +1 -0
  271. package/esm/MultiLinearWiggleDisplay/components/util.d.ts +10 -0
  272. package/esm/MultiLinearWiggleDisplay/components/util.js +31 -0
  273. package/esm/MultiLinearWiggleDisplay/components/util.js.map +1 -0
  274. package/esm/MultiLinearWiggleDisplay/index.d.ts +3 -0
  275. package/esm/MultiLinearWiggleDisplay/index.js +18 -0
  276. package/esm/MultiLinearWiggleDisplay/index.js.map +1 -0
  277. package/esm/MultiLinearWiggleDisplay/models/configSchema.d.ts +2 -0
  278. package/esm/MultiLinearWiggleDisplay/models/configSchema.js +74 -0
  279. package/esm/MultiLinearWiggleDisplay/models/configSchema.js.map +1 -0
  280. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +339 -0
  281. package/esm/MultiLinearWiggleDisplay/models/model.js +570 -0
  282. package/esm/MultiLinearWiggleDisplay/models/model.js.map +1 -0
  283. package/esm/MultiQuantitativeTrack/index.d.ts +3 -0
  284. package/esm/MultiQuantitativeTrack/index.js +14 -0
  285. package/esm/MultiQuantitativeTrack/index.js.map +1 -0
  286. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.d.ts +7 -0
  287. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js +33 -0
  288. package/esm/MultiRowLineRenderer/MultiRowLineRenderer.js.map +1 -0
  289. package/esm/MultiRowLineRenderer/configSchema.d.ts +2 -0
  290. package/esm/MultiRowLineRenderer/configSchema.js +18 -0
  291. package/esm/MultiRowLineRenderer/configSchema.js.map +1 -0
  292. package/esm/MultiRowLineRenderer/index.d.ts +3 -0
  293. package/esm/MultiRowLineRenderer/index.js +12 -0
  294. package/esm/MultiRowLineRenderer/index.js.map +1 -0
  295. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.d.ts +7 -0
  296. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js +39 -0
  297. package/esm/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.js.map +1 -0
  298. package/esm/MultiRowXYPlotRenderer/configSchema.d.ts +2 -0
  299. package/esm/MultiRowXYPlotRenderer/configSchema.js +26 -0
  300. package/esm/MultiRowXYPlotRenderer/configSchema.js.map +1 -0
  301. package/esm/MultiRowXYPlotRenderer/index.d.ts +3 -0
  302. package/esm/MultiRowXYPlotRenderer/index.js +12 -0
  303. package/esm/MultiRowXYPlotRenderer/index.js.map +1 -0
  304. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.d.ts +28 -0
  305. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js +87 -0
  306. package/esm/MultiWiggleAdapter/MultiWiggleAdapter.js.map +1 -0
  307. package/esm/MultiWiggleAdapter/configSchema.d.ts +2 -0
  308. package/esm/MultiWiggleAdapter/configSchema.js +12 -0
  309. package/esm/MultiWiggleAdapter/configSchema.js.map +1 -0
  310. package/esm/MultiWiggleAdapter/index.d.ts +3 -0
  311. package/esm/MultiWiggleAdapter/index.js +15 -0
  312. package/esm/MultiWiggleAdapter/index.js.map +1 -0
  313. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.d.ts +5 -0
  314. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js +87 -0
  315. package/esm/MultiWiggleAddTrackWidget/AddTrackWorkflow.js.map +1 -0
  316. package/esm/MultiWiggleAddTrackWidget/index.d.ts +3 -0
  317. package/esm/MultiWiggleAddTrackWidget/index.js +12 -0
  318. package/esm/MultiWiggleAddTrackWidget/index.js.map +1 -0
  319. package/esm/MultiWiggleRendering.d.ts +21 -0
  320. package/esm/MultiWiggleRendering.js +75 -0
  321. package/esm/MultiWiggleRendering.js.map +1 -0
  322. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.d.ts +7 -0
  323. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js +28 -0
  324. package/esm/MultiXYPlotRenderer/MultiXYPlotRenderer.js.map +1 -0
  325. package/esm/MultiXYPlotRenderer/configSchema.d.ts +2 -0
  326. package/esm/MultiXYPlotRenderer/configSchema.js +26 -0
  327. package/esm/MultiXYPlotRenderer/configSchema.js.map +1 -0
  328. package/esm/MultiXYPlotRenderer/index.d.ts +3 -0
  329. package/esm/MultiXYPlotRenderer/index.js +12 -0
  330. package/esm/MultiXYPlotRenderer/index.js.map +1 -0
  331. package/esm/QuantitativeTrack/index.d.ts +3 -0
  332. package/esm/QuantitativeTrack/index.js +14 -0
  333. package/esm/QuantitativeTrack/index.js.map +1 -0
  334. package/esm/Tooltip.d.ts +20 -0
  335. package/esm/Tooltip.js +71 -0
  336. package/esm/Tooltip.js.map +1 -0
  337. package/esm/WiggleBaseRenderer.d.ts +54 -0
  338. package/esm/WiggleBaseRenderer.js +36 -0
  339. package/esm/WiggleBaseRenderer.js.map +1 -0
  340. package/esm/WiggleRPC/rpcMethods.d.ts +47 -0
  341. package/esm/WiggleRPC/rpcMethods.js +112 -0
  342. package/esm/WiggleRPC/rpcMethods.js.map +1 -0
  343. package/esm/WiggleRendering.d.ts +16 -0
  344. package/esm/WiggleRendering.js +36 -0
  345. package/esm/WiggleRendering.js.map +1 -0
  346. package/esm/XYPlotRenderer/XYPlotRenderer.d.ts +7 -0
  347. package/esm/XYPlotRenderer/XYPlotRenderer.js +26 -0
  348. package/esm/XYPlotRenderer/XYPlotRenderer.js.map +1 -0
  349. package/esm/XYPlotRenderer/configSchema.d.ts +2 -0
  350. package/esm/XYPlotRenderer/configSchema.js +26 -0
  351. package/esm/XYPlotRenderer/configSchema.js.map +1 -0
  352. package/esm/XYPlotRenderer/index.d.ts +7 -0
  353. package/esm/XYPlotRenderer/index.js +13 -0
  354. package/esm/XYPlotRenderer/index.js.map +1 -0
  355. package/esm/configSchema.d.ts +2 -0
  356. package/esm/configSchema.js +41 -0
  357. package/esm/configSchema.js.map +1 -0
  358. package/esm/drawxy.d.ts +50 -0
  359. package/esm/drawxy.js +286 -0
  360. package/esm/drawxy.js.map +1 -0
  361. package/esm/index.d.ts +975 -0
  362. package/esm/index.js +90 -0
  363. package/esm/index.js.map +1 -0
  364. package/esm/util.d.ts +74 -0
  365. package/esm/util.js +231 -0
  366. package/esm/util.js.map +1 -0
  367. package/package.json +32 -18
  368. package/src/BigWigAdapter/BigWigAdapter.ts +53 -35
  369. package/src/BigWigAdapter/__snapshots__/BigWigAdapter.test.ts.snap +10 -10
  370. package/src/BigWigAdapter/configSchema.ts +5 -0
  371. package/src/BigWigAdapter/index.ts +19 -1
  372. package/src/CreateMultiWiggleExtension/ConfirmDialog.tsx +66 -0
  373. package/src/CreateMultiWiggleExtension/index.ts +57 -0
  374. package/src/DensityRenderer/DensityRenderer.test.js +8 -2
  375. package/src/DensityRenderer/DensityRenderer.ts +14 -0
  376. package/src/DensityRenderer/__snapshots__/DensityRenderer.test.js.snap +8 -0
  377. package/src/{LinePlotRenderer/index.js → DensityRenderer/configSchema.ts} +5 -5
  378. package/src/DensityRenderer/index.ts +14 -53
  379. package/src/LinePlotRenderer/LinePlotRenderer.ts +19 -0
  380. package/src/LinePlotRenderer/configSchema.ts +16 -0
  381. package/src/LinePlotRenderer/index.ts +16 -0
  382. package/src/LinearWiggleDisplay/components/SetColorDialog.tsx +26 -31
  383. package/src/LinearWiggleDisplay/components/SetMinMaxDialog.tsx +13 -11
  384. package/src/LinearWiggleDisplay/components/Tooltip.tsx +6 -121
  385. package/src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx +9 -4
  386. package/src/LinearWiggleDisplay/index.ts +24 -3
  387. package/src/LinearWiggleDisplay/models/model.tsx +139 -224
  388. package/src/MultiDensityRenderer/MultiDensityRenderer.ts +39 -0
  389. package/src/MultiDensityRenderer/configSchema.ts +10 -0
  390. package/src/MultiDensityRenderer/index.ts +16 -0
  391. package/src/MultiLineRenderer/MultiLineRenderer.ts +29 -0
  392. package/src/MultiLineRenderer/configSchema.ts +24 -0
  393. package/src/MultiLineRenderer/index.ts +17 -0
  394. package/src/MultiLinearWiggleDisplay/components/SetColorDialog.tsx +322 -0
  395. package/src/MultiLinearWiggleDisplay/components/SetMinMaxDialog.tsx +113 -0
  396. package/src/MultiLinearWiggleDisplay/components/Tooltip.tsx +76 -0
  397. package/src/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.tsx +261 -0
  398. package/src/MultiLinearWiggleDisplay/components/YScaleBar.tsx +25 -0
  399. package/src/MultiLinearWiggleDisplay/components/declare.d.ts +1 -0
  400. package/src/MultiLinearWiggleDisplay/components/util.test.ts +69 -0
  401. package/src/MultiLinearWiggleDisplay/components/util.ts +33 -0
  402. package/src/MultiLinearWiggleDisplay/index.ts +20 -0
  403. package/src/MultiLinearWiggleDisplay/models/configSchema.ts +94 -0
  404. package/src/MultiLinearWiggleDisplay/models/model.tsx +721 -0
  405. package/src/MultiQuantitativeTrack/index.ts +26 -0
  406. package/src/MultiRowLineRenderer/MultiRowLineRenderer.ts +36 -0
  407. package/src/MultiRowLineRenderer/configSchema.ts +25 -0
  408. package/src/MultiRowLineRenderer/index.ts +16 -0
  409. package/src/MultiRowXYPlotRenderer/MultiRowXYPlotRenderer.ts +43 -0
  410. package/src/MultiRowXYPlotRenderer/configSchema.ts +33 -0
  411. package/src/MultiRowXYPlotRenderer/index.ts +16 -0
  412. package/src/MultiWiggleAdapter/MultiWiggleAdapter.ts +120 -0
  413. package/src/MultiWiggleAdapter/configSchema.ts +16 -0
  414. package/src/MultiWiggleAdapter/index.ts +20 -0
  415. package/src/MultiWiggleAdapter/test_data/volvox.bw +0 -0
  416. package/src/MultiWiggleAddTrackWidget/AddTrackWorkflow.tsx +130 -0
  417. package/src/MultiWiggleAddTrackWidget/index.ts +17 -0
  418. package/src/MultiWiggleRendering.tsx +125 -0
  419. package/src/MultiXYPlotRenderer/MultiXYPlotRenderer.ts +32 -0
  420. package/src/MultiXYPlotRenderer/configSchema.ts +31 -0
  421. package/src/MultiXYPlotRenderer/index.ts +17 -0
  422. package/src/QuantitativeTrack/index.ts +26 -0
  423. package/src/Tooltip.tsx +123 -0
  424. package/src/WiggleBaseRenderer.tsx +17 -11
  425. package/src/WiggleRPC/rpcMethods.ts +68 -17
  426. package/src/WiggleRendering.tsx +12 -18
  427. package/src/XYPlotRenderer/XYPlotRenderer.test.js +3 -1
  428. package/src/XYPlotRenderer/XYPlotRenderer.ts +19 -124
  429. package/src/XYPlotRenderer/__snapshots__/XYPlotRenderer.test.js.snap +8 -0
  430. package/src/XYPlotRenderer/configSchema.ts +32 -0
  431. package/src/XYPlotRenderer/index.ts +16 -10
  432. package/src/__snapshots__/WiggleRendering.test.js.snap +0 -2
  433. package/src/configSchema.ts +0 -28
  434. package/src/declare.d.ts +0 -1
  435. package/src/drawxy.ts +387 -0
  436. package/src/index.ts +75 -129
  437. package/src/util.ts +174 -0
  438. package/dist/BigWigAdapter/BigWigAdapter.test.js +0 -157
  439. package/dist/DensityRenderer/DensityRenderer.test.js +0 -88
  440. package/dist/WiggleRendering.test.js +0 -52
  441. package/dist/XYPlotRenderer/XYPlotRenderer.test.js +0 -87
  442. package/dist/declare.d.js +0 -1
  443. package/dist/index.test.js +0 -24
  444. package/dist/util.test.js +0 -66
  445. package/src/LinePlotRenderer/LinePlotRenderer.js +0 -91
  446. package/src/LinePlotRenderer/configSchema.js +0 -68
@@ -0,0 +1,26 @@
1
+ import { ConfigurationSchema } from '@jbrowse/core/configuration';
2
+ import { types } from 'mobx-state-tree';
3
+ import ConfigSchema from '../configSchema';
4
+ const configSchema = ConfigurationSchema('MultiXYPlotRenderer', {
5
+ filled: {
6
+ type: 'boolean',
7
+ defaultValue: true,
8
+ },
9
+ displayCrossHatches: {
10
+ type: 'boolean',
11
+ description: 'choose to draw cross hatches (sideways lines)',
12
+ defaultValue: false,
13
+ },
14
+ summaryScoreMode: {
15
+ type: 'stringEnum',
16
+ model: types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
17
+ description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
18
+ defaultValue: 'avg',
19
+ },
20
+ minSize: {
21
+ type: 'number',
22
+ defaultValue: 0,
23
+ },
24
+ }, { baseConfiguration: ConfigSchema, explicitlyTyped: true });
25
+ export default configSchema;
26
+ //# sourceMappingURL=configSchema.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/MultiXYPlotRenderer/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AACvC,OAAO,YAAY,MAAM,iBAAiB,CAAA;AAE1C,MAAM,YAAY,GAAG,mBAAmB,CACtC,qBAAqB,EACrB;IACE,MAAM,EAAE;QACN,IAAI,EAAE,SAAS;QACf,YAAY,EAAE,IAAI;KACnB;IACD,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;IACD,gBAAgB,EAAE;QAChB,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,KAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;QACzE,WAAW,EACT,oGAAoG;QACtG,YAAY,EAAE,KAAK;KACpB;IACD,OAAO,EAAE;QACP,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;KAChB;CACF,EACD,EAAE,iBAAiB,EAAE,YAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AACD,eAAe,YAAY,CAAA"}
@@ -0,0 +1,3 @@
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ declare const _default: (pluginManager: PluginManager) => void;
3
+ export default _default;
@@ -0,0 +1,12 @@
1
+ import ReactComponent from '../MultiWiggleRendering';
2
+ import MultiXYPlotRenderer from './MultiXYPlotRenderer';
3
+ import configSchema from './configSchema';
4
+ export default (pluginManager) => {
5
+ pluginManager.addRendererType(() => new MultiXYPlotRenderer({
6
+ name: 'MultiXYPlotRenderer',
7
+ ReactComponent,
8
+ configSchema,
9
+ pluginManager,
10
+ }));
11
+ };
12
+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/MultiXYPlotRenderer/index.ts"],"names":[],"mappings":"AAEA,OAAO,cAAc,MAAM,yBAAyB,CAAA;AACpD,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAEzC,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,eAAe,CAC3B,GAAG,EAAE,CACH,IAAI,mBAAmB,CAAC;QACtB,IAAI,EAAE,qBAAqB;QAC3B,cAAc;QACd,YAAY;QACZ,aAAa;KACd,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
@@ -0,0 +1,3 @@
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ declare const _default: (pluginManager: PluginManager) => void;
3
+ export default _default;
@@ -0,0 +1,14 @@
1
+ import { ConfigurationSchema } from '@jbrowse/core/configuration';
2
+ import { createBaseTrackConfig, createBaseTrackModel, } from '@jbrowse/core/pluggableElementTypes/models';
3
+ import TrackType from '@jbrowse/core/pluggableElementTypes/TrackType';
4
+ export default (pluginManager) => {
5
+ pluginManager.addTrackType(() => {
6
+ const configSchema = ConfigurationSchema('QuantitativeTrack', {}, { baseConfiguration: createBaseTrackConfig(pluginManager) });
7
+ return new TrackType({
8
+ name: 'QuantitativeTrack',
9
+ configSchema,
10
+ stateModel: createBaseTrackModel(pluginManager, 'QuantitativeTrack', configSchema),
11
+ });
12
+ });
13
+ };
14
+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/QuantitativeTrack/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,EACL,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,4CAA4C,CAAA;AACnD,OAAO,SAAS,MAAM,+CAA+C,CAAA;AAGrE,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,YAAY,CAAC,GAAG,EAAE;QAC9B,MAAM,YAAY,GAAG,mBAAmB,CACtC,mBAAmB,EACnB,EAAE,EACF,EAAE,iBAAiB,EAAE,qBAAqB,CAAC,aAAa,CAAC,EAAE,CAC5D,CAAA;QACD,OAAO,IAAI,SAAS,CAAC;YACnB,IAAI,EAAE,mBAAmB;YACzB,YAAY;YACZ,UAAU,EAAE,oBAAoB,CAC9B,aAAa,EACb,mBAAmB,EACnB,YAAY,CACb;SACF,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
@@ -0,0 +1,20 @@
1
+ import React from 'react';
2
+ import { Feature } from '@jbrowse/core/util';
3
+ declare type Coord = [number, number];
4
+ export declare type TooltipContentsComponent = React.ForwardRefExoticComponent<{
5
+ feature: Feature;
6
+ model: any;
7
+ } & React.RefAttributes<HTMLDivElement>>;
8
+ declare function Tooltip({ model, height, clientMouseCoord, offsetMouseCoord, clientRect, TooltipContents, useClientY, }: {
9
+ model: {
10
+ featureUnderMouse: Feature;
11
+ };
12
+ useClientY?: boolean;
13
+ height: number;
14
+ clientMouseCoord: Coord;
15
+ offsetMouseCoord: Coord;
16
+ clientRect?: DOMRect;
17
+ TooltipContents: TooltipContentsComponent;
18
+ }): JSX.Element | null;
19
+ declare const _default: typeof Tooltip;
20
+ export default _default;
package/esm/Tooltip.js ADDED
@@ -0,0 +1,71 @@
1
+ import React, { useMemo, useState } from 'react';
2
+ import { observer } from 'mobx-react';
3
+ import { alpha, Portal } from '@mui/material';
4
+ import { makeStyles } from 'tss-react/mui';
5
+ // locals
6
+ import { YSCALEBAR_LABEL_OFFSET, round } from './util';
7
+ import { usePopper } from 'react-popper';
8
+ const useStyles = makeStyles()(theme => ({
9
+ // these styles come from
10
+ // https://github.com/mui-org/material-ui/blob/master/packages/material-ui/src/Tooltip/Tooltip.js
11
+ tooltip: {
12
+ position: 'absolute',
13
+ pointerEvents: 'none',
14
+ backgroundColor: alpha(theme.palette.grey[700], 0.9),
15
+ borderRadius: theme.shape.borderRadius,
16
+ color: theme.palette.common.white,
17
+ fontFamily: theme.typography.fontFamily,
18
+ padding: '4px 8px',
19
+ fontSize: theme.typography.pxToRem(12),
20
+ lineHeight: `${round(14 / 10)}em`,
21
+ maxWidth: 300,
22
+ wordWrap: 'break-word',
23
+ },
24
+ hoverVertical: {
25
+ background: '#333',
26
+ border: 'none',
27
+ width: 1,
28
+ height: '100%',
29
+ top: YSCALEBAR_LABEL_OFFSET,
30
+ cursor: 'default',
31
+ position: 'absolute',
32
+ pointerEvents: 'none',
33
+ },
34
+ }));
35
+ function Tooltip({ model, height, clientMouseCoord, offsetMouseCoord, clientRect, TooltipContents, useClientY, }) {
36
+ const { featureUnderMouse } = model;
37
+ const [width, setWidth] = useState(0);
38
+ const [anchorEl, setAnchorEl] = useState(null);
39
+ const { classes } = useStyles();
40
+ // must be memoized a la https://github.com/popperjs/react-popper/issues/391
41
+ const virtElement = useMemo(() => ({
42
+ getBoundingClientRect: () => {
43
+ const x = clientMouseCoord[0] + width / 2 + 20;
44
+ const y = useClientY ? clientMouseCoord[1] : (clientRect === null || clientRect === void 0 ? void 0 : clientRect.top) || 0;
45
+ return {
46
+ top: y,
47
+ left: x,
48
+ bottom: y,
49
+ right: x,
50
+ width: 0,
51
+ height: 0,
52
+ x,
53
+ y,
54
+ toJSON() { },
55
+ };
56
+ },
57
+ }), [clientRect === null || clientRect === void 0 ? void 0 : clientRect.top, clientMouseCoord, width, useClientY]);
58
+ const { styles, attributes } = usePopper(virtElement, anchorEl);
59
+ return featureUnderMouse ? (React.createElement(React.Fragment, null,
60
+ React.createElement(Portal, null,
61
+ React.createElement("div", { ref: setAnchorEl, className: classes.tooltip,
62
+ // zIndex needed to go over widget drawer
63
+ style: { ...styles.popper, zIndex: 100000 }, ...attributes.popper },
64
+ React.createElement(TooltipContents, { ref: elt => setWidth((elt === null || elt === void 0 ? void 0 : elt.getBoundingClientRect().width) || 0), model: model, feature: featureUnderMouse }))),
65
+ React.createElement("div", { className: classes.hoverVertical, style: {
66
+ left: offsetMouseCoord[0],
67
+ height: height - YSCALEBAR_LABEL_OFFSET * 2,
68
+ } }))) : null;
69
+ }
70
+ export default observer(Tooltip);
71
+ //# sourceMappingURL=Tooltip.js.map
@@ -0,0 +1 @@
1
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@@ -0,0 +1,54 @@
1
+ /// <reference types="react" />
2
+ import FeatureRendererType, { RenderArgs as FeatureRenderArgs, RenderArgsSerialized, RenderArgsDeserialized as FeatureRenderArgsDeserialized, RenderResults, ResultsSerialized, ResultsDeserialized } from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
3
+ import { Feature } from '@jbrowse/core/util';
4
+ import { ThemeOptions } from '@mui/material';
5
+ import { ScaleOpts, Source } from './util';
6
+ export interface RenderArgs extends FeatureRenderArgs {
7
+ scaleOpts: ScaleOpts;
8
+ }
9
+ export interface RenderArgsDeserialized extends FeatureRenderArgsDeserialized {
10
+ bpPerPx: number;
11
+ height: number;
12
+ highResolutionScaling: number;
13
+ scaleOpts: ScaleOpts;
14
+ displayCrossHatches: boolean;
15
+ ticks: {
16
+ values: number[];
17
+ };
18
+ themeOptions: ThemeOptions;
19
+ }
20
+ export interface RenderArgsDeserializedWithFeatures extends RenderArgsDeserialized {
21
+ features: Map<string, Feature>;
22
+ }
23
+ export interface MultiRenderArgsDeserialized extends RenderArgsDeserializedWithFeatures {
24
+ sources: Source[];
25
+ }
26
+ export type { RenderArgsSerialized, RenderResults, ResultsSerialized, ResultsDeserialized, };
27
+ export default abstract class WiggleBaseRenderer extends FeatureRendererType {
28
+ supportsSVG: boolean;
29
+ render(renderProps: RenderArgsDeserialized): Promise<{
30
+ features: any;
31
+ containsNoTransferables: boolean;
32
+ height: number;
33
+ width: number;
34
+ canvasRecordedData: any;
35
+ reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
36
+ html?: string | undefined;
37
+ } | {
38
+ features: any;
39
+ containsNoTransferables: boolean;
40
+ height: number;
41
+ width: number;
42
+ reactElement: JSX.Element;
43
+ html?: string | undefined;
44
+ } | {
45
+ features: any;
46
+ containsNoTransferables: boolean;
47
+ height: number;
48
+ width: number;
49
+ imageData: any;
50
+ reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
51
+ html?: string | undefined;
52
+ }>;
53
+ abstract draw<T extends RenderArgsDeserializedWithFeatures>(ctx: CanvasRenderingContext2D, props: T): Promise<Record<string, unknown> | void>;
54
+ }
@@ -0,0 +1,36 @@
1
+ import FeatureRendererType from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
2
+ import { renderToAbstractCanvas } from '@jbrowse/core/util';
3
+ export default class WiggleBaseRenderer extends FeatureRendererType {
4
+ constructor() {
5
+ super(...arguments);
6
+ this.supportsSVG = true;
7
+ }
8
+ async render(renderProps) {
9
+ const features = await this.getFeatures(renderProps);
10
+ const { height, regions, bpPerPx } = renderProps;
11
+ const [region] = regions;
12
+ const width = (region.end - region.start) / bpPerPx;
13
+ // @ts-ignore
14
+ const { reducedFeatures, ...rest } = await renderToAbstractCanvas(width, height, renderProps, ctx => this.draw(ctx, {
15
+ ...renderProps,
16
+ features,
17
+ }));
18
+ const results = await super.render({
19
+ ...renderProps,
20
+ ...rest,
21
+ features,
22
+ height,
23
+ width,
24
+ });
25
+ return {
26
+ ...results,
27
+ ...rest,
28
+ // @ts-ignore
29
+ features: reducedFeatures || results.features,
30
+ containsNoTransferables: true,
31
+ height,
32
+ width,
33
+ };
34
+ }
35
+ }
36
+ //# sourceMappingURL=WiggleBaseRenderer.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"WiggleBaseRenderer.js","sourceRoot":"","sources":["../src/WiggleBaseRenderer.tsx"],"names":[],"mappings":"AAAA,OAAO,mBAON,MAAM,mEAAmE,CAAA;AAC1E,OAAO,EAAE,sBAAsB,EAAW,MAAM,oBAAoB,CAAA;AAmCpE,MAAM,CAAC,OAAO,OAAgB,kBAAmB,SAAQ,mBAAmB;IAA5E;;QACE,gBAAW,GAAG,IAAI,CAAA;IA+CpB,CAAC;IA7CC,KAAK,CAAC,MAAM,CAAC,WAAmC;QAC9C,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;QACpD,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,WAAW,CAAA;QAChD,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;QACxB,MAAM,KAAK,GAAG,CAAC,MAAM,CAAC,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,GAAG,OAAO,CAAA;QAEnD,aAAa;QACb,MAAM,EAAE,eAAe,EAAE,GAAG,IAAI,EAAE,GAAG,MAAM,sBAAsB,CAC/D,KAAK,EACL,MAAM,EACN,WAAW,EACX,GAAG,CAAC,EAAE,CACJ,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE;YACb,GAAG,WAAW;YACd,QAAQ;SACT,CAAC,CACL,CAAA;QAED,MAAM,OAAO,GAAG,MAAM,KAAK,CAAC,MAAM,CAAC;YACjC,GAAG,WAAW;YACd,GAAG,IAAI;YACP,QAAQ;YACR,MAAM;YACN,KAAK;SACN,CAAC,CAAA;QAEF,OAAO;YACL,GAAG,OAAO;YACV,GAAG,IAAI;YACP,aAAa;YACb,QAAQ,EAAE,eAAe,IAAI,OAAO,CAAC,QAAQ;YAC7C,uBAAuB,EAAE,IAAI;YAC7B,MAAM;YACN,KAAK;SACN,CAAA;IACH,CAAC;CAUF"}
@@ -0,0 +1,47 @@
1
+ import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
2
+ import { RenderArgs } from '@jbrowse/core/rpc/coreRpcMethods';
3
+ import { Region } from '@jbrowse/core/util';
4
+ import { RemoteAbortSignal } from '@jbrowse/core/rpc/remoteAbortSignals';
5
+ import { FeatureStats } from '@jbrowse/core/util/stats';
6
+ export declare class WiggleGetGlobalStats extends RpcMethodType {
7
+ name: string;
8
+ deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
9
+ execute(args: {
10
+ adapterConfig: {};
11
+ signal?: RemoteAbortSignal;
12
+ headers?: Record<string, string>;
13
+ sessionId: string;
14
+ }, rpcDriverClassName: string): Promise<FeatureStats>;
15
+ }
16
+ export declare class WiggleGetMultiRegionStats extends RpcMethodType {
17
+ name: string;
18
+ deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
19
+ serializeArguments(args: RenderArgs & {
20
+ signal?: AbortSignal;
21
+ statusCallback?: Function;
22
+ }, rpcDriverClassName: string): Promise<{}>;
23
+ execute(args: {
24
+ adapterConfig: {};
25
+ signal?: RemoteAbortSignal;
26
+ sessionId: string;
27
+ headers?: Record<string, string>;
28
+ regions: Region[];
29
+ bpPerPx: number;
30
+ }, rpcDriverClassName: string): Promise<FeatureStats>;
31
+ }
32
+ export declare class MultiWiggleGetSources extends RpcMethodType {
33
+ name: string;
34
+ deserializeArguments(args: any, rpcDriverClassName: string): Promise<any>;
35
+ serializeArguments(args: RenderArgs & {
36
+ signal?: AbortSignal;
37
+ statusCallback?: Function;
38
+ }, rpcDriverClassName: string): Promise<{}>;
39
+ execute(args: {
40
+ adapterConfig: {};
41
+ signal?: RemoteAbortSignal;
42
+ sessionId: string;
43
+ headers?: Record<string, string>;
44
+ regions: Region[];
45
+ bpPerPx: number;
46
+ }, rpcDriverClassName: string): Promise<any>;
47
+ }
@@ -0,0 +1,112 @@
1
+ import RpcMethodType from '@jbrowse/core/pluggableElementTypes/RpcMethodType';
2
+ import SerializableFilterChain from '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain';
3
+ import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
4
+ import { renameRegionsIfNeeded } from '@jbrowse/core/util';
5
+ import { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
6
+ export class WiggleGetGlobalStats extends RpcMethodType {
7
+ constructor() {
8
+ super(...arguments);
9
+ this.name = 'WiggleGetGlobalStats';
10
+ }
11
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
12
+ async deserializeArguments(args, rpcDriverClassName) {
13
+ const l = await super.deserializeArguments(args, rpcDriverClassName);
14
+ return {
15
+ ...l,
16
+ filters: args.filters
17
+ ? new SerializableFilterChain({
18
+ filters: args.filters,
19
+ })
20
+ : undefined,
21
+ };
22
+ }
23
+ async execute(args, rpcDriverClassName) {
24
+ const pm = this.pluginManager;
25
+ const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
26
+ const { adapterConfig, sessionId } = deserializedArgs;
27
+ const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
28
+ // @ts-ignore
29
+ return dataAdapter.getGlobalStats(deserializedArgs);
30
+ }
31
+ }
32
+ export class WiggleGetMultiRegionStats extends RpcMethodType {
33
+ constructor() {
34
+ super(...arguments);
35
+ this.name = 'WiggleGetMultiRegionStats';
36
+ }
37
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
38
+ async deserializeArguments(args, rpcDriverClassName) {
39
+ const l = await super.deserializeArguments(args, rpcDriverClassName);
40
+ return {
41
+ ...l,
42
+ filters: args.filters
43
+ ? new SerializableFilterChain({
44
+ filters: args.filters,
45
+ })
46
+ : undefined,
47
+ };
48
+ }
49
+ async serializeArguments(args, rpcDriverClassName) {
50
+ var _a, _b, _c;
51
+ const pm = this.pluginManager;
52
+ const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
53
+ if (!assemblyManager) {
54
+ return args;
55
+ }
56
+ const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
57
+ ...args,
58
+ filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
59
+ });
60
+ return super.serializeArguments(renamedArgs, rpcDriverClassName);
61
+ }
62
+ async execute(args, rpcDriverClassName) {
63
+ const pm = this.pluginManager;
64
+ const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
65
+ const { regions, adapterConfig, sessionId } = deserializedArgs;
66
+ const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
67
+ if (dataAdapter instanceof BaseFeatureDataAdapter) {
68
+ return dataAdapter.getMultiRegionStats(regions, deserializedArgs);
69
+ }
70
+ throw new Error('Data adapter not found');
71
+ }
72
+ }
73
+ export class MultiWiggleGetSources extends RpcMethodType {
74
+ constructor() {
75
+ super(...arguments);
76
+ this.name = 'MultiWiggleGetSources';
77
+ }
78
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
79
+ async deserializeArguments(args, rpcDriverClassName) {
80
+ const l = await super.deserializeArguments(args, rpcDriverClassName);
81
+ return {
82
+ ...l,
83
+ filters: args.filters
84
+ ? new SerializableFilterChain({
85
+ filters: args.filters,
86
+ })
87
+ : undefined,
88
+ };
89
+ }
90
+ async serializeArguments(args, rpcDriverClassName) {
91
+ var _a, _b, _c;
92
+ const pm = this.pluginManager;
93
+ const assemblyManager = (_b = (_a = pm.rootModel) === null || _a === void 0 ? void 0 : _a.session) === null || _b === void 0 ? void 0 : _b.assemblyManager;
94
+ if (!assemblyManager) {
95
+ return args;
96
+ }
97
+ const renamedArgs = await renameRegionsIfNeeded(assemblyManager, {
98
+ ...args,
99
+ filters: (_c = args.filters) === null || _c === void 0 ? void 0 : _c.toJSON().filters,
100
+ });
101
+ return super.serializeArguments(renamedArgs, rpcDriverClassName);
102
+ }
103
+ async execute(args, rpcDriverClassName) {
104
+ const pm = this.pluginManager;
105
+ const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
106
+ const { regions, adapterConfig, sessionId } = deserializedArgs;
107
+ const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
108
+ // @ts-ignore
109
+ return dataAdapter.getSources(regions, deserializedArgs);
110
+ }
111
+ }
112
+ //# sourceMappingURL=rpcMethods.js.map
@@ -0,0 +1 @@
1
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@@ -0,0 +1,16 @@
1
+ /// <reference types="react" />
2
+ import { Region } from '@jbrowse/core/util/types';
3
+ import { Feature } from '@jbrowse/core/util';
4
+ declare function WiggleRendering(props: {
5
+ regions: Region[];
6
+ features: Map<string, Feature>;
7
+ bpPerPx: number;
8
+ width: number;
9
+ height: number;
10
+ onMouseLeave: Function;
11
+ onMouseMove: Function;
12
+ onFeatureClick: Function;
13
+ blockKey: string;
14
+ }): JSX.Element;
15
+ declare const _default: typeof WiggleRendering;
16
+ export default _default;
@@ -0,0 +1,36 @@
1
+ import { observer } from 'mobx-react';
2
+ import React, { useRef } from 'react';
3
+ import { PrerenderedCanvas } from '@jbrowse/core/ui';
4
+ function WiggleRendering(props) {
5
+ const { regions, features, bpPerPx, width, height, onMouseLeave = () => { }, onMouseMove = () => { }, onFeatureClick = () => { }, } = props;
6
+ const [region] = regions;
7
+ const ref = useRef(null);
8
+ function getFeatureUnderMouse(eventClientX) {
9
+ // calculates feature under mouse
10
+ let offset = 0;
11
+ if (ref.current) {
12
+ offset = ref.current.getBoundingClientRect().left;
13
+ }
14
+ const offsetX = eventClientX - offset;
15
+ const px = region.reversed ? width - offsetX : offsetX;
16
+ const clientBp = region.start + bpPerPx * px;
17
+ let featureUnderMouse;
18
+ for (const feature of features.values()) {
19
+ // bpPerPx added to the end to accomodate "reduced features" (one feature per px)
20
+ if (clientBp <= feature.get('end') + bpPerPx &&
21
+ clientBp >= feature.get('start')) {
22
+ featureUnderMouse = feature;
23
+ break;
24
+ }
25
+ }
26
+ return featureUnderMouse;
27
+ }
28
+ return (React.createElement("div", { ref: ref, "data-testid": "wiggle-rendering-test", onMouseMove: event => { var _a; return onMouseMove(event, (_a = getFeatureUnderMouse(event.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onClick: event => { var _a; return onFeatureClick(event, (_a = getFeatureUnderMouse(event.clientX)) === null || _a === void 0 ? void 0 : _a.id()); }, onMouseLeave: event => onMouseLeave(event), style: {
29
+ overflow: 'visible',
30
+ position: 'relative',
31
+ height,
32
+ } },
33
+ React.createElement(PrerenderedCanvas, { ...props })));
34
+ }
35
+ export default observer(WiggleRendering);
36
+ //# sourceMappingURL=WiggleRendering.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"WiggleRendering.js","sourceRoot":"","sources":["../src/WiggleRendering.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAIrC,OAAO,EAAE,iBAAiB,EAAE,MAAM,kBAAkB,CAAA;AAEpD,SAAS,eAAe,CAAC,KAUxB;IACC,MAAM,EACJ,OAAO,EACP,QAAQ,EACR,OAAO,EACP,KAAK,EACL,MAAM,EACN,YAAY,GAAG,GAAG,EAAE,GAAE,CAAC,EACvB,WAAW,GAAG,GAAG,EAAE,GAAE,CAAC,EACtB,cAAc,GAAG,GAAG,EAAE,GAAE,CAAC,GAC1B,GAAG,KAAK,CAAA;IACT,MAAM,CAAC,MAAM,CAAC,GAAG,OAAO,CAAA;IACxB,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IAExC,SAAS,oBAAoB,CAAC,YAAoB;QAChD,iCAAiC;QACjC,IAAI,MAAM,GAAG,CAAC,CAAA;QACd,IAAI,GAAG,CAAC,OAAO,EAAE;YACf,MAAM,GAAG,GAAG,CAAC,OAAO,CAAC,qBAAqB,EAAE,CAAC,IAAI,CAAA;SAClD;QACD,MAAM,OAAO,GAAG,YAAY,GAAG,MAAM,CAAA;QACrC,MAAM,EAAE,GAAG,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,GAAG,OAAO,CAAC,CAAC,CAAC,OAAO,CAAA;QACtD,MAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,GAAG,OAAO,GAAG,EAAE,CAAA;QAC5C,IAAI,iBAAiB,CAAA;QACrB,KAAK,MAAM,OAAO,IAAI,QAAQ,CAAC,MAAM,EAAE,EAAE;YACvC,iFAAiF;YACjF,IACE,QAAQ,IAAI,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,OAAO;gBACxC,QAAQ,IAAI,OAAO,CAAC,GAAG,CAAC,OAAO,CAAC,EAChC;gBACA,iBAAiB,GAAG,OAAO,CAAA;gBAC3B,MAAK;aACN;SACF;QACD,OAAO,iBAAiB,CAAA;IAC1B,CAAC;IACD,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,iBACI,uBAAuB,EACnC,WAAW,EAAE,KAAK,CAAC,EAAE,WACnB,OAAA,WAAW,CAAC,KAAK,EAAE,MAAA,oBAAoB,CAAC,KAAK,CAAC,OAAO,CAAC,0CAAE,EAAE,EAAE,CAAC,CAAA,EAAA,EAE/D,OAAO,EAAE,KAAK,CAAC,EAAE,WACf,OAAA,cAAc,CAAC,KAAK,EAAE,MAAA,oBAAoB,CAAC,KAAK,CAAC,OAAO,CAAC,0CAAE,EAAE,EAAE,CAAC,CAAA,EAAA,EAElE,YAAY,EAAE,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,KAAK,CAAC,EAC1C,KAAK,EAAE;YACL,QAAQ,EAAE,SAAS;YACnB,QAAQ,EAAE,UAAU;YACpB,MAAM;SACP;QAED,oBAAC,iBAAiB,OAAK,KAAK,GAAI,CAC5B,CACP,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,eAAe,CAAC,CAAA"}
@@ -0,0 +1,7 @@
1
+ import { Feature } from '@jbrowse/core/util';
2
+ import WiggleBaseRenderer, { RenderArgsDeserializedWithFeatures } from '../WiggleBaseRenderer';
3
+ export default class XYPlotRenderer extends WiggleBaseRenderer {
4
+ draw(ctx: CanvasRenderingContext2D, props: RenderArgsDeserializedWithFeatures): Promise<{
5
+ reducedFeatures: Feature[];
6
+ }>;
7
+ }
@@ -0,0 +1,26 @@
1
+ import { readConfObject } from '@jbrowse/core/configuration';
2
+ import { drawXY } from '../drawxy';
3
+ import WiggleBaseRenderer from '../WiggleBaseRenderer';
4
+ import { YSCALEBAR_LABEL_OFFSET } from '../util';
5
+ export default class XYPlotRenderer extends WiggleBaseRenderer {
6
+ async draw(ctx, props) {
7
+ const { features, config } = props;
8
+ // the adjusted height takes into account YSCALEBAR_LABEL_OFFSET from the
9
+ // wiggle display, and makes the height of the actual drawn area add
10
+ // "padding" to the top and bottom of the display
11
+ const pivotValue = readConfObject(config, 'bicolorPivotValue');
12
+ const negColor = readConfObject(config, 'negColor');
13
+ const posColor = readConfObject(config, 'posColor');
14
+ const Color = await import('color').then(f => f.default);
15
+ return drawXY(ctx, {
16
+ ...props,
17
+ colorCallback: readConfObject(config, 'color') === '#f0f'
18
+ ? (_, score) => score < pivotValue ? negColor : posColor
19
+ : (feature, _score) => readConfObject(config, 'color', { feature }),
20
+ offset: YSCALEBAR_LABEL_OFFSET,
21
+ features: [...features.values()],
22
+ Color,
23
+ });
24
+ }
25
+ }
26
+ //# sourceMappingURL=XYPlotRenderer.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"XYPlotRenderer.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/XYPlotRenderer.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAE5D,OAAO,EAAE,MAAM,EAAE,MAAM,WAAW,CAAA;AAClC,OAAO,kBAEN,MAAM,uBAAuB,CAAA;AAC9B,OAAO,EAAE,sBAAsB,EAAE,MAAM,SAAS,CAAA;AAEhD,MAAM,CAAC,OAAO,OAAO,cAAe,SAAQ,kBAAkB;IAC5D,KAAK,CAAC,IAAI,CACR,GAA6B,EAC7B,KAAyC;QAEzC,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,GAAG,KAAK,CAAA;QAElC,yEAAyE;QACzE,oEAAoE;QACpE,iDAAiD;QACjD,MAAM,UAAU,GAAG,cAAc,CAAC,MAAM,EAAE,mBAAmB,CAAC,CAAA;QAC9D,MAAM,QAAQ,GAAG,cAAc,CAAC,MAAM,EAAE,UAAU,CAAC,CAAA;QACnD,MAAM,QAAQ,GAAG,cAAc,CAAC,MAAM,EAAE,UAAU,CAAC,CAAA;QACnD,MAAM,KAAK,GAAG,MAAM,MAAM,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,OAAO,CAAC,CAAA;QAExD,OAAO,MAAM,CAAC,GAAG,EAAE;YACjB,GAAG,KAAK;YACR,aAAa,EACX,cAAc,CAAC,MAAM,EAAE,OAAO,CAAC,KAAK,MAAM;gBACxC,CAAC,CAAC,CAAC,CAAU,EAAE,KAAa,EAAE,EAAE,CAC5B,KAAK,GAAG,UAAU,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,QAAQ;gBAC5C,CAAC,CAAC,CAAC,OAAgB,EAAE,MAAc,EAAE,EAAE,CACnC,cAAc,CAAC,MAAM,EAAE,OAAO,EAAE,EAAE,OAAO,EAAE,CAAC;YACpD,MAAM,EAAE,sBAAsB;YAC9B,QAAQ,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC;YAChC,KAAK;SACN,CAAC,CAAA;IACJ,CAAC;CACF"}
@@ -0,0 +1,2 @@
1
+ declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
+ export default configSchema;
@@ -0,0 +1,26 @@
1
+ import { ConfigurationSchema } from '@jbrowse/core/configuration';
2
+ import ConfigSchema from '../configSchema';
3
+ import { types } from 'mobx-state-tree';
4
+ const configSchema = ConfigurationSchema('XYPlotRenderer', {
5
+ filled: {
6
+ type: 'boolean',
7
+ defaultValue: true,
8
+ },
9
+ displayCrossHatches: {
10
+ type: 'boolean',
11
+ description: 'choose to draw cross hatches (sideways lines)',
12
+ defaultValue: false,
13
+ },
14
+ summaryScoreMode: {
15
+ type: 'stringEnum',
16
+ model: types.enumeration('Score type', ['max', 'min', 'avg', 'whiskers']),
17
+ description: 'choose whether to use max/min/average or whiskers which combines all three into the same rendering',
18
+ defaultValue: 'whiskers',
19
+ },
20
+ minSize: {
21
+ type: 'number',
22
+ defaultValue: 0,
23
+ },
24
+ }, { baseConfiguration: ConfigSchema, explicitlyTyped: true });
25
+ export default configSchema;
26
+ //# sourceMappingURL=configSchema.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AACjE,OAAO,YAAY,MAAM,iBAAiB,CAAA;AAC1C,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAEvC,MAAM,YAAY,GAAG,mBAAmB,CACtC,gBAAgB,EAChB;IACE,MAAM,EAAE;QACN,IAAI,EAAE,SAAS;QACf,YAAY,EAAE,IAAI;KACnB;IACD,mBAAmB,EAAE;QACnB,IAAI,EAAE,SAAS;QACf,WAAW,EAAE,+CAA+C;QAC5D,YAAY,EAAE,KAAK;KACpB;IACD,gBAAgB,EAAE;QAChB,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,KAAK,CAAC,WAAW,CAAC,YAAY,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;QACzE,WAAW,EACT,oGAAoG;QACtG,YAAY,EAAE,UAAU;KACzB;IACD,OAAO,EAAE;QACP,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,CAAC;KAChB;CACF,EACD,EAAE,iBAAiB,EAAE,YAAY,EAAE,eAAe,EAAE,IAAI,EAAE,CAC3D,CAAA;AAED,eAAe,YAAY,CAAA"}
@@ -0,0 +1,7 @@
1
+ import ReactComponent from '../WiggleRendering';
2
+ import PluginManager from '@jbrowse/core/PluginManager';
3
+ import XYPlotRenderer from './XYPlotRenderer';
4
+ import configSchema from './configSchema';
5
+ export { XYPlotRenderer, configSchema, ReactComponent };
6
+ declare const _default: (pluginManager: PluginManager) => void;
7
+ export default _default;
@@ -0,0 +1,13 @@
1
+ import ReactComponent from '../WiggleRendering';
2
+ import XYPlotRenderer from './XYPlotRenderer';
3
+ import configSchema from './configSchema';
4
+ export { XYPlotRenderer, configSchema, ReactComponent };
5
+ export default (pluginManager) => {
6
+ pluginManager.addRendererType(() => new XYPlotRenderer({
7
+ name: 'XYPlotRenderer',
8
+ ReactComponent,
9
+ configSchema,
10
+ pluginManager,
11
+ }));
12
+ };
13
+ //# sourceMappingURL=index.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/XYPlotRenderer/index.ts"],"names":[],"mappings":"AAAA,OAAO,cAAc,MAAM,oBAAoB,CAAA;AAE/C,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,EAAE,cAAc,EAAE,YAAY,EAAE,cAAc,EAAE,CAAA;AAEvD,eAAe,CAAC,aAA4B,EAAE,EAAE;IAC9C,aAAa,CAAC,eAAe,CAC3B,GAAG,EAAE,CACH,IAAI,cAAc,CAAC;QACjB,IAAI,EAAE,gBAAgB;QACtB,cAAc;QACd,YAAY;QACZ,aAAa;KACd,CAAC,CACL,CAAA;AACH,CAAC,CAAA"}
@@ -0,0 +1,2 @@
1
+ declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
+ export default _default;